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Fan P, Yu H, Lv T, Wang H, Li D, Tong C, Wu Z, Yu D, Liu C. Alien emergent aquatic plants develop better ciprofloxacin tolerance and metabolic capacity than one native submerged species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 932:173030. [PMID: 38719043 DOI: 10.1016/j.scitotenv.2024.173030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2024] [Revised: 05/02/2024] [Accepted: 05/05/2024] [Indexed: 05/12/2024]
Abstract
Antibiotic pollution and biological invasion pose significant risks to freshwater biodiversity and ecosystem health. However, few studies have compared the ecological adaptability and ciprofloxacin (CIPR) degradation potential between alien and native macrophytes. We examined growth, physiological response, and CIPR accumulation, translocation and metabolic abilities of two alien plants (Eichhornia crassipes and Myriophyllum aquaticum) and one native submerged species (Vallisneria natans) exposed to CIPR at 0, 1 and 10 mg/L. We found that E. crassipes and M. aquaticum's growth were unaffected by CIPR while V. natans was significantly hindered under the 10 mg/L treatment. CIPR significantly decreased the maximal quantum yield of PSII, actual quantum yield of PSII and relative electron transfer rate in E. crassipes and V. natans but didn't impact these photosynthetic characteristics in M. aquaticum. All the plants can accumulate, translocate and metabolize CIPR. M. aquaticum and E. crassipes in the 10 mg/L treatment group showed greater CIPR accumulation potential than V. natans indicated by higher CIPR contents in their roots. The oxidative cleavage of the piperazine ring acts as a key pathway for these aquatic plants to metabolize CIPR and the metabolites mainly distributed in plant roots. M. aquaticum and E. crassipes showed a higher production of CIPR metabolites compared to V. natans, with M. aquaticum exhibiting the strongest CIPR metabolic ability, as indicated by the most extensive structural breakdown of CIPR and the largest number of potential metabolic pathways. Taken together, alien species outperformed the native species in ecological adaptability, CIPR accumulation and metabolic capacity. These findings may shed light on the successful invasion mechanisms of alien aquatic species under antibiotic pressure and highlight the potential ecological impacts of alien species, particularly M. aquaticum. Additionally, the interaction of antibiotic contamination and invasion might further challenge the native submerged macrophytes and pose greater risks to freshwater ecosystems.
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Affiliation(s)
- Pei Fan
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Haihao Yu
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Tian Lv
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Huiyuan Wang
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Dexiang Li
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Chao Tong
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Zhonghua Wu
- Water Pollution Ecology Laboratory, College of Life Sciences, Wuhan University, Wuhan 430072, PR China
| | - Dan Yu
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China
| | - Chunhua Liu
- The National Field Station of Freshwater Ecosystem of Liangzi Lake, College of Life Science, Wuhan University, Wuhan 430072, PR China.
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Xie M, Wang X, Zeng Q, Shen J, Huang B. Growth physiology and chlorophyll fluorescence analysis of two moss species under different LED light qualities. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 212:108777. [PMID: 38820915 DOI: 10.1016/j.plaphy.2024.108777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 05/05/2024] [Accepted: 05/26/2024] [Indexed: 06/02/2024]
Abstract
This study investigated the responses of Didymodon constrictus and Hypnum plumaeforme to different light qualities emitted by light-emitting diodes (LEDs), including white light (WL), red light (RL), blue light (BL), yellow light (YL), green light (GL), and a combination of red and blue light (R1B1L). The research analyzed the fluorescence imaging, photosynthetic pigments, coloration, and growth characteristics related to antioxidant enzymes in these two moss species. The results indicated that R1B1L significantly enhanced the content of photosynthetic pigments, maximum relative electron transport rate (rETRmax), saturation light intensity (IK), and the greenness of the moss. RL improved the maximum quantum yield (Fv/Fm), the light energy efficiency of H. plumaeforme and effective quantum yield in both moss species. In contrast, BL notably increased non-photochemical quenching (NPQ), photochemical quenching (qp), and the steady-state fluorescence decrease ratio (RFD) in H. plumaeforme. The application of GL significantly increases the maximum photon yield (Fv/Fm) in D. constrictus, as well as the light energy efficiency and elongation length, resulting in a shift in the color composition of both moss species towards yellow. Among the light treatments, R1B1L had the highest induction rate and promotional effect on the growth of both moss species. These mosses absorbed GL and RL effectively, while BL played a crucial role in the dissipation of heat and electron transfer in H. plumaeforme. This research provides valuable insights for the regulation of LED light environments and the physiological adaptability of moss in artificial cultivation.
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Affiliation(s)
- Meixuan Xie
- College of Forestry, Guizhou University, Guiyang, Guizhou, China
| | - Xiurong Wang
- College of Forestry, Guizhou University, Guiyang, Guizhou, China.
| | - Qingying Zeng
- College of Forestry, Guizhou University, Guiyang, Guizhou, China
| | - Junjie Shen
- College of Forestry, Guizhou University, Guiyang, Guizhou, China
| | - Bufang Huang
- College of Forestry, Guizhou University, Guiyang, Guizhou, China
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Lauterberg M, Tschiersch H, Zhao Y, Kuhlmann M, Mücke I, Papa R, Bitocchi E, Neumann K. Implementation of theoretical non-photochemical quenching (NPQ (T)) to investigate NPQ of chickpea under drought stress with High-throughput Phenotyping. Sci Rep 2024; 14:13970. [PMID: 38886488 PMCID: PMC11183218 DOI: 10.1038/s41598-024-63372-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 05/27/2024] [Indexed: 06/20/2024] Open
Abstract
Non-photochemical quenching (NPQ) is a protective mechanism for dissipating excess energy generated during photosynthesis in the form of heat. The accelerated relaxation of the NPQ in fluctuating light can lead to an increase in the yield and dry matter productivity of crops. Since the measurement of NPQ is time-consuming and requires specific light conditions, theoretical NPQ (NPQ(T)) was introduced for rapid estimation, which could be suitable for High-throughput Phenotyping. We investigated the potential of NPQ(T) to be used for testing plant genetic resources of chickpea under drought stress with non-invasive High-throughput Phenotyping complemented with yield traits. Besides a high correlation between the hundred-seed-weight and the Estimated Biovolume, significant differences were observed between the two types of chickpea desi and kabuli for Estimated Biovolume and NPQ(T). Desi was able to maintain the Estimated Biovolume significantly better under drought stress. One reason could be the effective dissipation of excess excitation energy in photosystem II, which can be efficiently measured as NPQ(T). Screening of plant genetic resources for photosynthetic performance could take pre-breeding to a higher level and can be implemented in a variety of studies, such as here with drought stress or under fluctuating light in a High-throughput Phenotyping manner using NPQ(T).
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Affiliation(s)
- Madita Lauterberg
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Henning Tschiersch
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Yusheng Zhao
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Markus Kuhlmann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Ingo Mücke
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany
| | - Roberto Papa
- Marche Polytechnic University (UNIVPM), Ancona, Italy
| | | | - Kerstin Neumann
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Seeland, Germany.
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Yu J, Chen J, Li Q, Ren P, Tang Y, Huang R, Lu Y, Chen K. Toxicity and fate of cadmium in hydroponically cultivated lettuce (Lactuca sativa L.) influenced by microplastics. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 278:116422. [PMID: 38705040 DOI: 10.1016/j.ecoenv.2024.116422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 04/02/2024] [Accepted: 04/30/2024] [Indexed: 05/07/2024]
Abstract
Although more attention has been paid to microplastics (MPs) pollution in environment, research on the synthetic influence of microplastic and heavy metals remains limited. To help fill this information gap, we investigated the adsorption behavior of virgin polyvinyl chloride microplastics (PVCMPs) (≤450 µm white spherical powder) on cadmium (II). The effects on seed germination, seedling growth, photosynthetic system, oxidative stress indicators of lettuce, and changes in Cd bioavailability were evaluated under Cd2+ (25 μmol/L), PVCMPs (200 mg/L), and PVCMP-Cd combined (200 mg/L + 25 μmol/L) exposures in hydroponic system. The results demonstrated that the PVCMPs effectively adsorbed Cd ions, which validated by the pseudo-second-order kinetic and the Langmuir isotherm models, indicating the sorption of Cd2+ on the PVCMPs was primary chemisorption and approximates monomolecular layer sorption. Compared to MPs, Cd significantly inhibits plant seed germination and seedling growth and development. However, Surprising improvement in seed germination under PVCMPs-Cd exposure was observed. Moreover, Cd2+ and MPs alone or combined stress caused oxidative stress with reactive oxygen species (ROS) including H2O2, O2- and Malondialdehyde (MDA) accumulation in plants, and substantially damaged to photosynthesis. With the addition of PVCMPs, the content of Cd in the leaves significantly (P<0.01) decreased by 1.76-fold, and the translocation factor and Cd2+removal rate in the water substantially (P<0.01) decreased by 6.73-fold and 1.67-fold, respectively in contrast to Cd2+ stress alone. Therefore, it is concluded the PVCMP was capable of reducing Cd contents in leaves, alleviating Cd toxicity in lettuce. Notably, this study provides a scientific foundation and reference for comprehending the toxicological interactions between microplastics and heavy metals in the environment.
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Affiliation(s)
- Jiadie Yu
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China
| | - Juelin Chen
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China
| | - Qiong Li
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China
| | - Peng Ren
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China
| | - Yunlai Tang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China
| | - Renhua Huang
- College of Biological Engineering, Jingchu University of Technology, Jingmen, Hubei 448000, PR China
| | - Yunmei Lu
- College of Biological Engineering, Jingchu University of Technology, Jingmen, Hubei 448000, PR China.
| | - Ke Chen
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, PR China.
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Osyczka P, Myśliwa-Kurdziel B. Do the expected heatwaves pose a threat to lichens?: Linkage between a passive decline in water content in thalli and response to heat stress. PLANT, CELL & ENVIRONMENT 2024. [PMID: 38874284 DOI: 10.1111/pce.14999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 05/25/2024] [Accepted: 05/30/2024] [Indexed: 06/15/2024]
Abstract
Being poikilohydric, lichens are inherently exposed to alternating desiccation and hydration cycles. They can exhibit extraordinary resistance to extreme temperatures in a dehydrated state but thermal thresholds for hydrated lichens are lower. The ability of the lichen Cetraria aculeata to recovery after high temperature treatment (40°C, 60°C) at different air humidity levels (relative humidity [RH]: <15%, 25%, 50%, 75%, ≅100%) was examined to find a linkage between passive dehydration of the lichen and its physiological resistance to heat stress. The response to heating was determined by measuring parameters related to photosynthesis and respiration after 2- and 24-h recovery. A higher RH level resulted in a slower decline in relative water content (RWC) in hydrated thalli. In turn, the stress resistance of active thalli depended on the ambient humidity and associated RWC reduction. Elevated temperature had a negative impact on bioenergetic processes, but only an unnatural state of permanent full hydration during heat stress resulted in a lethal effect. Hydrated lichen thalli heated at 40°C and 50% relative humidity (RH) tended to be least susceptible to stress-induced damage. Although atypical climatic conditions may lead lichens to lethal thresholds, the actual likelihood of deadly threat to lichens due to heat events per se is debatable.
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Affiliation(s)
- Piotr Osyczka
- Institute of Botany, Faculty of Biology, Jagiellonian University, Krakow, Poland
| | - Beata Myśliwa-Kurdziel
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland
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Orzechowska A, Czaderna-Lekka A, Trtílek M, Szymańska R, Trela-Makowej A, Wątor K. Novel technique for the ultra-sensitive detection of hazardous contaminants using an innovative sensor integrated with a bioreactor. Sci Rep 2024; 14:12836. [PMID: 38834660 DOI: 10.1038/s41598-024-63631-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 05/30/2024] [Indexed: 06/06/2024] Open
Abstract
This study introduces an evaluation methodology tailored for bioreactors, with the aim of assessing the stress experienced by algae due to harmful contaminants released from antifouling (AF) paints. We present an online monitoring system equipped with an ultra-sensitive sensor that conducts non-invasive measurements of algal culture's optical density and physiological stage through chlorophyll fluorescence signals. By coupling the ultra-sensitive sensor with flash-induced chlorophyll fluorescence, we examined the dynamic fluorescence changes in the green microalga Chlamydomonas reinhardtii when exposed to biocides. Over a 24-h observation period, increasing concentrations of biocides led to a decrease in photosynthetic activity. Notably, a substantial reduction in the maximum quantum yield of primary photochemistry (FV/FM) was observed within the first hour of exposure. Subsequently, we detected a partial recovery in FV/FM; however, this recovery remained 50% lower than that of the controls. Integrating the advanced submersible sensor with fluorescence decay kinetics offered a comprehensive perspective on the dynamic alterations in algal cells under the exposure to biocides released from antifouling coatings. The analysis of fluorescence relaxation kinetics revealed a significant shortening of the fast and middle phases, along with an increase in the duration of the slow phase, for the coating with the highest levels of biocides. Combining automated culturing and measuring methods, this approach has demonstrated its effectiveness as an ultrasensitive and non-invasive tool for monitoring the physiology of photosynthetic cultures. This is particularly valuable in the context of studying microalgae and their early responses to various environmental conditions, as well as the potential to develop an AF system with minimal harm to the environment.
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Affiliation(s)
- Aleksandra Orzechowska
- Faculty of Physics and Applied Computer Science, AGH University of Krakow, al. A. Mickiewicza 30, 30-059, Kraków, Poland.
| | - Anna Czaderna-Lekka
- Department of Machine Learning, Faculty of Informatics and Communication, University of Economics in Katowice, 1 Maja 50, 40-287, Katowice, Poland
| | - Martin Trtílek
- Photon Systems Instruments, Průmyslová 470, 664 24, Drásov, Czech Republic
| | - Renata Szymańska
- Faculty of Physics and Applied Computer Science, AGH University of Krakow, al. A. Mickiewicza 30, 30-059, Kraków, Poland
| | - Agnieszka Trela-Makowej
- Faculty of Physics and Applied Computer Science, AGH University of Krakow, al. A. Mickiewicza 30, 30-059, Kraków, Poland
| | - Katarzyna Wątor
- Faculty of Geology, Geophysics and Environmental Protection, AGH University of Krakow, al. A. Mickiewicza 30, 30-059, Kraków, Poland
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Saewong C, Ow YX, Nualla-Ong A, Buapet P. Comparative effects of heat stress on photosynthesis and oxidative stress in Halophila ovalis and Thalassia hemprichii under different light conditions. MARINE ENVIRONMENTAL RESEARCH 2024; 199:106589. [PMID: 38852494 DOI: 10.1016/j.marenvres.2024.106589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 04/19/2024] [Accepted: 06/03/2024] [Indexed: 06/11/2024]
Abstract
This study investigated the physiological responses of two tropical seagrass species, Halophila ovalis and Thalassia hemprichii, to heat stress under varying light conditions in a controlled 5-day experiment. The experimental design included four treatments: control, saturating light, heat stress under sub-saturating light, and heat stress under saturating light (combined stress). We assessed various parameters, including chlorophyll fluorescence, levels of reactive oxygen species (ROS), antioxidant enzyme activities, and growth rates. In H. ovalis, heat stress resulted in a significant reduction in the maximum quantum yield of photosystem II (Fv/Fm) regardless of the light condition. However, the effects of heat stress on the effective quantum yield of photosystem II (ɸPSII) were more pronounced under saturating light conditions. In T. hemprichii, saturating irradiance exacerbated the heat stress effects on Fv/Fm and ɸPSII, although the overall photoinhibition was less severe than in H. ovalis. Heat stress led to ROS accumulation in H. ovalis and reduced the activity of superoxide dismutase (SOD) and ascorbate peroxidase in the sub-saturating light condition. Conversely, T. hemprichii exhibited elevated SOD activity under saturating light. Heat stress suppressed the growth of both seagrass species, regardless of the light environment. The Biomarker Response Index indicated that H. ovalis displayed severe effects in the heat stress treatment under both light conditions, while T. hemprichii exhibited moderate effects in sub-saturating light and major effects in saturating light conditions. However, the Effect Addition Index revealed an antagonistic interaction between heat stress and high light in both seagrass species. This study underscores the intricate responses of seagrasses, emphasizing the importance of considering both local and global stressors when assessing their vulnerability.
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Affiliation(s)
- Chanida Saewong
- Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand; Coastal Oceanography and Climate Change Research Center, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand
| | - Yan Xiang Ow
- St John's Island National Marine Laboratory, Tropical Marine Science Institute, National University of Singapore, 14 Kent Ridge Road, 119227, Singapore
| | - Aekkaraj Nualla-Ong
- Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand; Center for Genomics and Bioinformatics Research, Faculty of Science, Prince of Songkla University, Songkhla, 90110, Thailand
| | - Pimchanok Buapet
- Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand; Coastal Oceanography and Climate Change Research Center, Prince of Songkla University, Hat Yai, Songkhla, 90110, Thailand.
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Wilhelm de Almeida L, Pastenes C, Ojeda H, Torregrosa L, Pellegrino A. Water deficit differentially modulates leaf photosynthesis and transpiration of fungus-tolerant Muscadinia x Vitis hybrids. FRONTIERS IN PLANT SCIENCE 2024; 15:1405343. [PMID: 38817935 PMCID: PMC11137165 DOI: 10.3389/fpls.2024.1405343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Accepted: 04/30/2024] [Indexed: 06/01/2024]
Abstract
Screening for drought performance among novel fungi-tolerant grapevine genotypes is a key point to consider in semiarid regions where water scarcity is a common problem during fruit ripening period. It is therefore important to evaluate the genotypes' responses at the level of carbon metabolism and water demand, under water deficit conditions. This study aimed to characterize leaf and plant water use efficiency (respectively named WUEi and WUEpl) of novel INRAE fungi-tolerant genotypes (including LowSugarBerry (LSB) genotypes), under mild and high-water deficit (WD) and to decipher the photosynthetic parameters leading to higher WUEi. For this purpose, experiments were conducted on potted plants during one season using a phenotyping platform. Two stabilized soil moisture capacity (SMC) conditions, corresponding to mild (SMC 0.6) and high (SMC 0.3) WD, were imposed from the onset of berry ripening until the physiological ripeness stage, which was defined as the point at which fruits reach their maximum solutes and water content. At the whole plant level, all genotypes increased WUEpl under high WD. The highest WUEpl was reached for 3176N, which displayed both a high rate of non-structural carbon accumulation in fruits due to high fruit-to-leaf ratio and low plant transpiration because of low total leaf area. However, when normalizing the fruit-to-leaf ratio among the genotypes, G14 reached the highest normalized WUEpl_n under high WD. At the leaf level, WUEi also increased under high WD, with the highest value attained for G14 and 3176N and the lowest value for Syrah. The higher WUEi values for all genotypes compared to Syrah were associated to higher levels of photosynthesis and changes in light-harvesting efficiency parameters (ΦCO2, qP and qN), while no clear trend was apparent when considering the photosynthetic biochemical parameters (Vcmax, Jmax). Finally, a positive correlation between leaf and plant WUE was observed regardless of genotypes. This study allowed us to classify grapevine genotypes based on their grapes primary metabolite accumulation and water consumption during the critical sugar-loading period. Additionally, the study highlighted the potential drought adaptation mechanism of the LSB genotypes.
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Affiliation(s)
- Luciana Wilhelm de Almeida
- UE Pech Rouge, Univ Montpellier, INRAE, Gruissan, France
- UMR LEPSE, Univ Montpellier, INRAE, CIRAD, Institut Agro Montpellier, Montpellier, France
| | - Claudio Pastenes
- Departamento de Producción Agrícola, Facultad de Ciencias Agronómicas, Universidad de Chile, Santiago, Chile
| | - Hernán Ojeda
- UE Pech Rouge, Univ Montpellier, INRAE, Gruissan, France
| | - Laurent Torregrosa
- UE Pech Rouge, Univ Montpellier, INRAE, Gruissan, France
- UMR LEPSE, Univ Montpellier, INRAE, CIRAD, Institut Agro Montpellier, Montpellier, France
| | - Anne Pellegrino
- UMR LEPSE, Univ Montpellier, INRAE, CIRAD, Institut Agro Montpellier, Montpellier, France
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Kolomeichuk LV, Murgan OK, Danilova ED, Serafimovich MV, Khripach VA, Litvinovskaya RP, Sauchuk AL, Denisiuk DV, Zhabinskii VN, Kuznetsov VV, Efimova MV. Effects of Lactone- and Ketone-Brassinosteroids of the 28-Homobrassinolide Series on Barley Plants under Water Deficit. PLANTS (BASEL, SWITZERLAND) 2024; 13:1345. [PMID: 38794416 PMCID: PMC11124923 DOI: 10.3390/plants13101345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Revised: 05/08/2024] [Accepted: 05/10/2024] [Indexed: 05/26/2024]
Abstract
The aim of this work was to study the ability of 28-homobrassinolide (HBL) and 28-homocastasterone (HCS) to increase the resistance of barley (Hordeum vulgare L.) plants to drought and to alter their endogenous brassinosteroid status. Germinated barley seeds were treated with 0.1 nM HBL or HCS solutions for two hours. A water deficit was created by stopping the watering of 7-day-old plants for the next two weeks. Plants responded to drought through growth inhibition, impaired water status, increased lipid peroxidation, differential effects on antioxidant enzymes, intense proline accumulation, altered expression of genes involved in metabolism, and decreased endogenous contents of hormones (28-homobrassinolide, B-ketones, and B-lactones). Pretreatment of plants with HBL reduced the inhibitory effect of drought on fresh and dry biomass accumulation and relative water content, whereas HCS partially reversed the negative effect of drought on fresh biomass accumulation, reduced the intensity of lipid peroxidation, and increased the osmotic potential. Compared with drought stress alone, pretreatment of plants with HCS or HBL followed by drought increased superoxide dismutase activity sevenfold or threefold and catalase activity (by 36%). The short-term action of HBL and HCS in subsequent drought conditions partially restored the endogenous B-ketone and B-lactone contents. Thus, the steroidal phytohormones HBL and HCS increased barley plant resistance to subsequent drought, showing some specificity of action.
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Affiliation(s)
- Liliya V. Kolomeichuk
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia; (L.V.K.); (O.K.M.); (E.D.D.); (M.V.S.)
| | - Ol’ga K. Murgan
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia; (L.V.K.); (O.K.M.); (E.D.D.); (M.V.S.)
| | - Elena D. Danilova
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia; (L.V.K.); (O.K.M.); (E.D.D.); (M.V.S.)
| | - Mariya V. Serafimovich
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia; (L.V.K.); (O.K.M.); (E.D.D.); (M.V.S.)
| | - Vladimir A. Khripach
- Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Kuprevich Street 5/2, 220084 Minsk, Belarus; (V.A.K.); (A.L.S.); (V.N.Z.)
| | - Raisa P. Litvinovskaya
- Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Kuprevich Street 5/2, 220084 Minsk, Belarus; (V.A.K.); (A.L.S.); (V.N.Z.)
| | - Alina L. Sauchuk
- Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Kuprevich Street 5/2, 220084 Minsk, Belarus; (V.A.K.); (A.L.S.); (V.N.Z.)
| | - Daria V. Denisiuk
- Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Kuprevich Street 5/2, 220084 Minsk, Belarus; (V.A.K.); (A.L.S.); (V.N.Z.)
| | - Vladimir N. Zhabinskii
- Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Kuprevich Street 5/2, 220084 Minsk, Belarus; (V.A.K.); (A.L.S.); (V.N.Z.)
| | - Vladimir V. Kuznetsov
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia; (L.V.K.); (O.K.M.); (E.D.D.); (M.V.S.)
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow 127276, Russia;
| | - Marina V. Efimova
- Department of Plant Physiology, Biotechnology and Bioinformatics, Biological Institute, National Research Tomsk State University, Lenin Avenue 36, Tomsk 634050, Russia; (L.V.K.); (O.K.M.); (E.D.D.); (M.V.S.)
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10
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Nanes Sarfati D, Xue Y, Song ES, Byrne A, Le D, Darmanis S, Quake SR, Burlacot A, Sikes J, Wang B. Coordinated wound responses in a regenerative animal-algal holobiont. Nat Commun 2024; 15:4032. [PMID: 38740753 DOI: 10.1038/s41467-024-48366-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 04/24/2024] [Indexed: 05/16/2024] Open
Abstract
Animal regeneration involves coordinated responses across cell types throughout the animal body. In endosymbiotic animals, whether and how symbionts react to host injury and how cellular responses are integrated across species remain unexplored. Here, we study the acoel Convolutriloba longifissura, which hosts symbiotic Tetraselmis sp. green algae and can regenerate entire bodies from tissue fragments. We show that animal injury causes a decline in the photosynthetic efficiency of the symbiotic algae, alongside two distinct, sequential waves of transcriptional responses in acoel and algal cells. The initial algal response is characterized by the upregulation of a cohort of photosynthesis-related genes, though photosynthesis is not necessary for regeneration. A conserved animal transcription factor, runt, is induced after injury and required for acoel regeneration. Knockdown of Cl-runt dampens transcriptional responses in both species and further reduces algal photosynthetic efficiency post-injury. Our results suggest that the holobiont functions as an integrated unit of biological organization by coordinating molecular networks across species through the runt-dependent animal regeneration program.
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Affiliation(s)
| | - Yuan Xue
- Department of Bioengineering, Stanford University, Stanford, CA, USA
| | - Eun Sun Song
- Department of Applied Physics, Stanford University, Stanford, CA, USA
| | | | - Daniel Le
- Chan Zuckerberg Biohub, San Francisco, CA, USA
| | | | - Stephen R Quake
- Department of Bioengineering, Stanford University, Stanford, CA, USA
- Department of Applied Physics, Stanford University, Stanford, CA, USA
| | - Adrien Burlacot
- Department of Biology, Stanford University, Stanford, CA, USA
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - James Sikes
- Department of Biology, University of San Francisco, San Francisco, CA, USA.
| | - Bo Wang
- Department of Bioengineering, Stanford University, Stanford, CA, USA.
- Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA, USA.
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11
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Cunningham N, Crestani G, Csepregi K, Coughlan NE, Jansen MAK. Exploring the complexities of plant UV responses; distinct effects of UV-A and UV-B wavelengths on Arabidopsis rosette morphology. Photochem Photobiol Sci 2024:10.1007/s43630-024-00591-w. [PMID: 38736023 DOI: 10.1007/s43630-024-00591-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Accepted: 04/29/2024] [Indexed: 05/14/2024]
Abstract
UV-B radiation can substantially impact plant growth. To study UV-B effects, broadband UV-B tubes are commonly used. Apart from UV-B, such tubes also emit UV-A wavelengths. This study aimed to distinguish effects of different UV-B intensities on Arabidopsis thaliana wildtype and UVR8 mutant rosette morphology, from those by accompanying UV-A. UV-A promotes leaf-blade expansion along the proximal-distal, but not the medio-lateral, axis. Consequent increases in blade length: width ratio are associated with increased light capture. However, petiole length is not affected by UV-A exposure. This scenario is distinct from the shade avoidance driven by low red to far-red ratios, whereby leaf blade elongation is impeded but petiole elongation is promoted. Thus, the UV-A mediated elongation response is phenotypically distinct from classical shade avoidance. UV-B exerts inhibitory effects on petiole length, blade length and leaf area, and these effects are mediated by UVR8. Thus, UV-B antagonises aspects of both UV-A mediated elongation and classical shade avoidance. Indeed, this study shows that accompanying UV-A wavelengths can mask effects of UV-B. This may lead to potential underestimates of the magnitude of the UV-B induced morphological response using broadband UV-B tubes.
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Affiliation(s)
- Natalie Cunningham
- School of Biological, Earth and Environmental Sciences, Environmental Research Institute, University College Cork, North Mall, Cork, Ireland
| | - Gaia Crestani
- School of Biological, Earth and Environmental Sciences, Environmental Research Institute, University College Cork, North Mall, Cork, Ireland
| | - Kristóf Csepregi
- Department of Plant Biology, Institute of Biology, University of Pécs, Ifjúság u. 6, 7624, Pecs, Hungary
| | - Neil E Coughlan
- School of Biological, Earth and Environmental Sciences, Environmental Research Institute, University College Cork, North Mall, Cork, Ireland
| | - Marcel A K Jansen
- School of Biological, Earth and Environmental Sciences, Environmental Research Institute, University College Cork, North Mall, Cork, Ireland.
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12
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Sakashita Y, Kurashima H, Fukuda M, Hirano H, Lamsal S, Katayama N, Fukao T. Possible Roles of Carbohydrate Management and Cytokinin in the Process of Defoliation-Regrowth Cycles in Rice. Int J Mol Sci 2024; 25:5070. [PMID: 38791109 PMCID: PMC11120658 DOI: 10.3390/ijms25105070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 04/30/2024] [Accepted: 05/03/2024] [Indexed: 05/26/2024] Open
Abstract
Defoliation is an inevitable abiotic stress for forage and turf grasses because harvesting, grazing, and mowing are general processes for their production and management. Vegetative regrowth occurs upon defoliation, a crucial trait determining the productivity and persistence of these grasses. However, the information about the molecular regulation of this trait is limited because it is still challenging to perform molecular analyses in forage and turf grasses. Here, we used rice as a model to investigate vegetative regrowth upon defoliation at physiological and molecular levels. This study analyzed stubble and regrown leaves following periodic defoliation using two rice varieties with contrasting regrowth vigor. Vigorous regrowth was associated with maintained chlorophyll content and photosystem II performance; a restricted and promoted mRNA accumulation of sucrose synthase (SUS) I and III subfamilies, respectively; and reduced enzymatic activity of SUS. These results suggest that critical factors affecting vegetative regrowth upon defoliation are de novo carbohydrate synthesis by newly emerged leaves and proper carbohydrate management in leaves and stubble. Physiological and genetic analyses have demonstrated that the reduced sensitivity to and inhibited biosynthesis of cytokinin enhance regrowth vigor. Proper regulation of these metabolic and hormonal pathways identified in this study can lead to the development of new grass varieties with enhanced regrowth vigor following defoliation.
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Affiliation(s)
| | | | | | | | | | | | - Takeshi Fukao
- Department of Bioscience and Biotechnology, Fukui Prefectural University, Fukui 910-1195, Japan
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13
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Danzey LM, Briceño VF, Cook AM, Nicotra AB, Peyre G, Rossetto M, Yap JYS, Leigh A. Environmental and Biogeographic Drivers behind Alpine Plant Thermal Tolerance and Genetic Variation. PLANTS (BASEL, SWITZERLAND) 2024; 13:1271. [PMID: 38732486 PMCID: PMC11085172 DOI: 10.3390/plants13091271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/26/2024] [Accepted: 04/30/2024] [Indexed: 05/13/2024]
Abstract
In alpine ecosystems, elevation broadly functions as a steep thermal gradient, with plant communities exposed to regular fluctuations in hot and cold temperatures. These conditions lead to selective filtering, potentially contributing to species-level variation in thermal tolerance and population-level genetic divergence. Few studies have explored the breadth of alpine plant thermal tolerances across a thermal gradient or the underlying genetic variation thereof. We measured photosystem heat (Tcrit-hot) and cold (Tcrit-cold) thresholds of ten Australian alpine species across elevation gradients and characterised their neutral genetic variation. To reveal the biogeographical drivers of present-day genetic signatures, we also reconstructed temporal changes in habitat suitability across potential distributional ranges. We found intraspecific variation in thermal thresholds, but this was not associated with elevation, nor underpinned by genetic differentiation on a local scale. Instead, regional population differentiation and considerable homozygosity within populations may, in part, be driven by distributional contractions, long-term persistence, and migrations following habitat suitability. Our habitat suitability models suggest that cool-climate-distributed alpine plants may be threatened by a warming climate. Yet, the observed wide thermal tolerances did not reflect this vulnerability. Conservation efforts should seek to understand variations in species-level thermal tolerance across alpine microclimates.
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Affiliation(s)
- Lisa M. Danzey
- School of Life Sciences, Faculty of Science, University of Technology Sydney, Broadway, NSW 2007, Australia;
| | - Verónica F. Briceño
- Research School of Biology, Australian National University, Canberra, ACT 2601, Australia; (V.F.B.); (A.B.N.)
| | - Alicia M. Cook
- School of Life Sciences, Faculty of Science, University of Technology Sydney, Broadway, NSW 2007, Australia;
| | - Adrienne B. Nicotra
- Research School of Biology, Australian National University, Canberra, ACT 2601, Australia; (V.F.B.); (A.B.N.)
| | - Gwendolyn Peyre
- Department of Civil and Environmental Engineering, University of the Andes, Bogota 111711, Colombia;
| | - Maurizio Rossetto
- Research Centre for Ecosystem Resilience, Australian Institute of Botanical Science, Royal Botanic Gardens Sydney, Sydney, NSW 2000, Australia; (M.R.); (J.-Y.S.Y.)
- Queensland Alliance of Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072, Australia
| | - Jia-Yee S. Yap
- Research Centre for Ecosystem Resilience, Australian Institute of Botanical Science, Royal Botanic Gardens Sydney, Sydney, NSW 2000, Australia; (M.R.); (J.-Y.S.Y.)
- Queensland Alliance of Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072, Australia
| | - Andrea Leigh
- Research School of Biology, Australian National University, Canberra, ACT 2601, Australia; (V.F.B.); (A.B.N.)
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14
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Thuraga V, Ghadamgahi F, Dadi FA, Vetukuri RR, Chawade A. A new bacterial consortia for management of Fusarium head blight in wheat. Sci Rep 2024; 14:10131. [PMID: 38698085 PMCID: PMC11066059 DOI: 10.1038/s41598-024-60356-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 04/22/2024] [Indexed: 05/05/2024] Open
Abstract
Fusarium head blight (FHB) is a significantly important disease in cereals primarily caused by Fusarium species. FHB control is largely executed through chemical strategies, which are costlier to sustainable wheat production, resulting in leaning towards sustainable sources such as resistance breeding and biological control methods for FHB. The present investigation was aimed at evaluating newly identified bacterial consortium (BCM) as biocontrol agents for FHB and understanding the morpho-physiological traits associated with the disease resistance of spring wheat. Preliminary evaluation through antagonistic plate assay and in vivo assessment indicated that BCM effectively inhibited Fusarium growth in spring wheat, reducing area under disease progress curve (AUDPC) and deoxynivalenol (DON), potentially causing type II and V resistance, and improving single spike yield (SSPY). Endurance to FHB infection with the application of BCM is associated with better sustenance of spike photosynthetic performance by improving the light energy harvesting and its utilization. Correlation and path-coefficient analysis indicated that maximum quantum yield (QY_max) is directly influencing the improvement of SSPY and reduction of grain DON accumulation, which is corroborated by principal component analysis. The chlorophyll fluorescence traits identified in the present investigation might be applied as a phenotyping tool for the large-scale identification of wheat sensitivity to FHB.
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Affiliation(s)
- Vishnukiran Thuraga
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Växtförädling, Box 190, 234 22, Lomma, Sweden
| | - Farideh Ghadamgahi
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Växtförädling, Box 190, 234 22, Lomma, Sweden
| | - Fantaye Ayele Dadi
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Växtförädling, Box 190, 234 22, Lomma, Sweden
| | - Ramesh Raju Vetukuri
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Växtförädling, Box 190, 234 22, Lomma, Sweden
| | - Aakash Chawade
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Växtförädling, Box 190, 234 22, Lomma, Sweden.
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15
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John A, Krämer M, Lehmann M, Kunz HH, Aarabi F, Alseekh S, Fernie A, Sommer F, Schroda M, Zimmer D, Mühlhaus T, Peisker H, Gutbrod K, Dörmann P, Neunzig J, Philippar K, Neuhaus HE. Degradation of FATTY ACID EXPORT PROTEIN1 by RHOMBOID-LIKE PROTEASE11 contributes to cold tolerance in Arabidopsis. THE PLANT CELL 2024; 36:1937-1962. [PMID: 38242838 PMCID: PMC11062452 DOI: 10.1093/plcell/koae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 12/14/2023] [Accepted: 12/15/2023] [Indexed: 01/21/2024]
Abstract
Plants need to acclimate to different stresses to optimize growth under unfavorable conditions. In Arabidopsis (Arabidopsis thaliana), the abundance of the chloroplast envelope protein FATTY ACID EXPORT PROTEIN1 (FAX1) decreases after the onset of low temperatures. However, how FAX1 degradation occurs and whether altered FAX1 abundance contributes to cold tolerance in plants remains unclear. The rapid cold-induced increase in RHOMBOID-LIKE PROTEASE11 (RBL11) transcript levels, the physical interaction of RBL11 with FAX1, the specific FAX1 degradation after RBL11 expression, and the absence of cold-induced FAX1 degradation in rbl11 loss-of-function mutants suggest that this enzyme is responsible for FAX1 degradation. Proteomic analyses showed that rbl11 mutants have higher levels of FAX1 and other proteins involved in membrane lipid homeostasis, suggesting that RBL11 is a key element in the remodeling of membrane properties during cold conditions. Consequently, in the cold, rbl11 mutants show a shift in lipid biosynthesis toward the eukaryotic pathway, which coincides with impaired cold tolerance. To test whether cold sensitivity is due to increased FAX1 levels, we analyzed FAX1 overexpressors. The rbl11 mutants and FAX1 overexpressor lines show superimposable phenotypic defects upon exposure to cold temperatures. Our re-sults show that the cold-induced degradation of FAX1 by RBL11 is critical for Arabidop-sis to survive cold and freezing periods.
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Affiliation(s)
- Annalisa John
- Plant Physiology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Moritz Krämer
- Plant Biochemistry, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinsried 82152, Germany
| | - Martin Lehmann
- Plant Biochemistry, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinsried 82152, Germany
| | - Hans-Henning Kunz
- Plant Biochemistry, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinsried 82152, Germany
| | - Fayezeh Aarabi
- Max Planck Institut for Molecular Plant Physiology, Central Metabolism, Potsdam D-14476, Germany
| | - Saleh Alseekh
- Max Planck Institut for Molecular Plant Physiology, Central Metabolism, Potsdam D-14476, Germany
| | - Alisdair Fernie
- Max Planck Institut for Molecular Plant Physiology, Central Metabolism, Potsdam D-14476, Germany
| | - Frederik Sommer
- Molecular Biotechnology and Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Michael Schroda
- Molecular Biotechnology and Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - David Zimmer
- Computational Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Timo Mühlhaus
- Computational Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Helga Peisker
- Institute for Molecular Physiology and Biotechnology of Plants, IMBIO, University of Bonn, Bonn D-53115, Germany
| | - Katharina Gutbrod
- Institute for Molecular Physiology and Biotechnology of Plants, IMBIO, University of Bonn, Bonn D-53115, Germany
| | - Peter Dörmann
- Institute for Molecular Physiology and Biotechnology of Plants, IMBIO, University of Bonn, Bonn D-53115, Germany
| | - Jens Neunzig
- Plant Biology, Center for Human and Molecular Biology (ZHMB), Saarland University, Saarbrücken D-66123, Germany
| | - Katrin Philippar
- Plant Biology, Center for Human and Molecular Biology (ZHMB), Saarland University, Saarbrücken D-66123, Germany
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16
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Riaz A, Thomas J, Ali HH, Zaheer MS, Ahmad N, Pereira A. High night temperature stress on rice ( Oryza sativa) - insights from phenomics to physiology. A review. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP24057. [PMID: 38815128 DOI: 10.1071/fp24057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 05/12/2024] [Indexed: 06/01/2024]
Abstract
Rice (Oryza sativa ) faces challenges to yield and quality due to urbanisation, deforestation and climate change, which has exacerbated high night temperature (HNT). This review explores the impacts of HNT on the physiological, molecular and agronomic aspects of rice growth. Rise in minimum temperature threatens a potential 41% reduction in rice yield by 2100. HNT disrupts rice growth stages, causing reduced seed germination, biomass, spikelet sterility and poor grain development. Recent findings indicate a 4.4% yield decline for every 1°C increase beyond 27°C, with japonica ecotypes exhibiting higher sensitivity than indica. We examine the relationships between elevated CO2 , nitrogen regimes and HNT, showing that the complexity of balancing positive CO2 effects on biomass with HNT challenges. Nitrogen enrichment proves crucial during the vegetative stage but causes disruption to reproductive stages, affecting grain yield and starch synthesis. Additionally, we elucidate the impact of HNT on plant respiration, emphasising mitochondrial respiration, photorespiration and antioxidant responses. Genomic techniques, including CRISPR-Cas9, offer potential for manipulating genes for HNT tolerance. Plant hormones and carbohydrate enzymatic activities are explored, revealing their intricate roles in spikelet fertility, grain size and starch metabolism under HNT. Gaps in understanding genetic factors influencing heat tolerance and potential trade-offs associated with hormone applications remain. The importance of interdisciplinary collaboration is needed to provide a holistic approach. Research priorities include the study of regulatory mechanisms, post-anthesis effects, cumulative HNT exposure and the interaction between climate variability and HNT impact to provide a research direction to enhance rice resilience in a changing climate.
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Affiliation(s)
- Awais Riaz
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | - Julie Thomas
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
| | - Hafiz Haider Ali
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA; and Department of Agriculture, Government College University Lahore, Lahore 54000, Pakistan; and Department of Plant Sciences, Aberdeen Research & Extension Center, University of Idaho, Aberdeen, ID, USA
| | - Muhammad Saqlain Zaheer
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Naushad Ahmad
- Department of Chemistry, College of Science, King Saud University, Riyadh11451, Saudi Arabia
| | - Andy Pereira
- Department of Crop, Soil, and Environmental Sciences, Faculty of Agriculture Food and Life Sciences, University of Arkansas System Division of Agriculture, Fayetteville, AR 72701, USA
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17
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Das Choudhury S, Guadagno CR, Bashyam S, Mazis A, Ewers BE, Samal A, Awada T. Stress phenotyping analysis leveraging autofluorescence image sequences with machine learning. FRONTIERS IN PLANT SCIENCE 2024; 15:1353110. [PMID: 38708393 PMCID: PMC11066247 DOI: 10.3389/fpls.2024.1353110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 03/14/2024] [Indexed: 05/07/2024]
Abstract
Background Autofluorescence-based imaging has the potential to non-destructively characterize the biochemical and physiological properties of plants regulated by genotypes using optical properties of the tissue. A comparative study of stress tolerant and stress susceptible genotypes of Brassica rapa with respect to newly introduced stress-based phenotypes using machine learning techniques will contribute to the significant advancement of autofluorescence-based plant phenotyping research. Methods Autofluorescence spectral images have been used to design a stress detection classifier with two classes, stressed and non-stressed, using machine learning algorithms. The benchmark dataset consisted of time-series image sequences from three Brassica rapa genotypes (CC, R500, and VT), extreme in their morphological and physiological traits captured at the high-throughput plant phenotyping facility at the University of Nebraska-Lincoln, USA. We developed a set of machine learning-based classification models to detect the percentage of stressed tissue derived from plant images and identified the best classifier. From the analysis of the autofluorescence images, two novel stress-based image phenotypes were computed to determine the temporal variation in stressed tissue under progressive drought across different genotypes, i.e., the average percentage stress and the moving average percentage stress. Results The study demonstrated that both the computed phenotypes consistently discriminated against stressed versus non-stressed tissue, with oilseed type (R500) being less prone to drought stress relative to the other two Brassica rapa genotypes (CC and VT). Conclusion Autofluorescence signals from the 365/400 nm excitation/emission combination were able to segregate genotypic variation during a progressive drought treatment under a controlled greenhouse environment, allowing for the exploration of other meaningful phenotypes using autofluorescence image sequences with significance in the context of plant science.
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Affiliation(s)
- Sruti Das Choudhury
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, United States
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE, United States
| | | | - Srinidhi Bashyam
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Anastasios Mazis
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Brent E. Ewers
- Department of Botany, University of Wyoming, Laramie, WY, United States
| | - Ashok Samal
- School of Computing, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Tala Awada
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, United States
- Agricultural Research Division, University of Nebraska-Lincoln, Lincoln, NE, United States
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18
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Boonpeng C, Pischom M, Butrid P, Noikrad S, Boonpragob K. Laboratory and field measurements of water relations, photosynthetic parameters, and hydration traits in macrolichens in a tropical lower montane rainforest in Thailand. JOURNAL OF PLANT RESEARCH 2024:10.1007/s10265-024-01542-3. [PMID: 38619624 DOI: 10.1007/s10265-024-01542-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Accepted: 04/07/2024] [Indexed: 04/16/2024]
Abstract
Ecophysiological studies of lichens in tropical Asia are rare, and additional studies can increase the understanding of lichen life in this region. The main aim of this study was to observe the relationships between water availability and photosynthetic parameters, as well as hydration trait parameters, in macrolichens during the rainy and dry seasons in a tropical forest. A total of 11 lichen species growing in a lower montane rainforest in Thailand were collected and studied. The results clearly showed that the specific thallus mass (STM), net photosynthetic rate (Pn), the potential quantum yield of primary photochemistry (Fv/Fm), chlorophyll content, and carotenoid content of almost all lichens were lower in the dry season than in the rainy season. Field measurements in the dry season revealed that only the foliose chlorolichen Parmotrema tinctorum was metabolically active and exhibited slight carbon assimilation. In the rainy season, all lichens started their photosynthesis in the early morning, reached maximal values, declined, and ceased when the thalli desiccated. The photosynthetically active period of the lichens was approximately 2-3 h in the morning, and the activities of the cyanolichens ended approximately 30 min after the chlorolichens. The hydration trait parameters, including the STM, maximal water content (WCmax), and water holding capacity (WHC), were greater in the cyanolichens. In addition, the maximal Pn (Pnmax) and optimal water content (WCopt) for Pn were also greater in the cyanolichens, but the maximal Fv/Fm (Fv/Fmmax) was lower. The cyanolichens compensated for their inability to use humid air to restore photosynthesis by having higher water content and storage, higher photosynthetic rates, and longer photosynthetically active periods. This study provides additional insights into lichen ecophysiology in tropical forests that can be useful for lichen conservation.
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Affiliation(s)
- Chaiwat Boonpeng
- Department of Biology, Faculty of Science, Ramkhamhaeng University, Hua Mark, Bang Kapi, Bangkok, 10240, Thailand.
- Lichen Research Unit, Department of Biology, Faculty of Science, Ramkhamhaeng University, Hua Mark, Bang Kapi, Bangkok, 10240, Thailand.
| | - Marisa Pischom
- Lichen Research Unit, Department of Biology, Faculty of Science, Ramkhamhaeng University, Hua Mark, Bang Kapi, Bangkok, 10240, Thailand
| | - Pawanrat Butrid
- Lichen Research Unit, Department of Biology, Faculty of Science, Ramkhamhaeng University, Hua Mark, Bang Kapi, Bangkok, 10240, Thailand
| | - Sutatip Noikrad
- Lichen Research Unit, Department of Biology, Faculty of Science, Ramkhamhaeng University, Hua Mark, Bang Kapi, Bangkok, 10240, Thailand
| | - Kansri Boonpragob
- Lichen Research Unit, Department of Biology, Faculty of Science, Ramkhamhaeng University, Hua Mark, Bang Kapi, Bangkok, 10240, Thailand
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19
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Wirojsirasak W, Songsri P, Jongrungklang N, Tangphatsornruang S, Klomsa-ard P, Ukoskit K. Determination of Morpho-Physiological Traits for Assessing Drought Tolerance in Sugarcane. PLANTS (BASEL, SWITZERLAND) 2024; 13:1072. [PMID: 38674481 PMCID: PMC11054708 DOI: 10.3390/plants13081072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 04/07/2024] [Accepted: 04/09/2024] [Indexed: 04/28/2024]
Abstract
Drought is a significant constraint to sugarcane productivity. Therefore, understanding how different varieties of sugarcane respond to drought stress can facilitate breeding programs and set up criteria for selecting drought-tolerant varieties. In the present study, we examined eight morpho-physiological traits to distinguish 40 sugarcane genotypes categorized into four groups based on significant differences in cane yield under non-stressed conditions and reduction of cane yield under drought-stressed conditions. The study was conducted during the formative stage in a greenhouse, encompassing both control and drought conditions. Drought treatments resulted in significant changes and differences in the mean values of various morpho-physiological traits. The hierarchical clustering analysis, utilizing stay-green traits such as higher chlorophyll fluorescence ratio (Fv/Fm), leaf chlorophyll content (SPAD), leaf relative water content (RWC), and lower leaf rolling score (LR), leaf drying score (LD), and drought recovery score (DR), successfully grouped 40 sugarcane genotypes into four major clusters, similar to the previously categorized groups. Correlation analysis showed significant relationships among cane yield, reduction of cane yield under drought conditions, and the stay-green traits. Our results demonstrated that morpho-physiological traits contributing to the "stay-green" phenotypes could be useful as selection criteria for drought tolerance in sugarcane.
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Affiliation(s)
- Warodom Wirojsirasak
- Department of Biotechnology, Faculty of Science and Technology, Rangsit Campus, Thammasat University, Pathum Thani 12120, Thailand;
- Mitr Phol Innovation and Research Center, Chaiyaphum 36110, Thailand;
| | - Patcharin Songsri
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand;
- Northeast Thailand Cane and Sugar Research Center, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Nakorn Jongrungklang
- Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand;
- Northeast Thailand Cane and Sugar Research Center, Faculty of Agriculture, Khon Kaen University, Khon Kaen 40002, Thailand
| | - Sithichoke Tangphatsornruang
- National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani 12120, Thailand;
| | | | - Kittipat Ukoskit
- Department of Biotechnology, Faculty of Science and Technology, Rangsit Campus, Thammasat University, Pathum Thani 12120, Thailand;
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20
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Zhan D, Liu Y, Yu N, Hao C. Photosynthetic response of Chlamydomonas reinhardtii and Chlamydomonas sp. 1710 to zinc toxicity. Front Microbiol 2024; 15:1383360. [PMID: 38650883 PMCID: PMC11033396 DOI: 10.3389/fmicb.2024.1383360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Accepted: 03/25/2024] [Indexed: 04/25/2024] Open
Abstract
Zinc (Zn) is an essential trace element but can lead to water contamination and ecological deterioration when present in excessive amounts. Therefore, investigating the photosynthetic response of microalgae to Zn stress is of great significance. In this study, we assessed the photosynthetic responses of neutrophilic Chlamydomonas reinhardtii and acidophilic Chlamydomonas sp. 1710 to Zn exposure for 96 h. The specific growth rate (μ), chlorophyll-a (Chl-a) content, and chlorophyll fluorescence parameters were determined. The results demonstrated that Chlamydomonas sp. 1710 was much more tolerant to Zn than C. reinhardtii, with the half-maximal inhibitory concentration (IC50) values of 225.4 mg/L and 23.4 mg/L, respectively. The μ and Chl-a content of C. reinhardtii decreased in the presence of 15 mg/L Zn, whereas those of Chlamydomonas sp. 1710 were unaffected by as high as 100 mg/L Zn. Chlorophyll fluorescence parameters indicated that the regulation of energy dissipation, including non-photochemical quenching, played a crucial role in Zn stress resistance for both Chlamydomonas strains. However, in the case of C. reinhardtii, non-photochemical quenching was inhibited by 5 mg/L Zn in the first 48 h, whereas for Chlamydomonas sp. 1710, it remained unaffected under 100 mg/L Zn. Chlamydomonas sp. 1710 also exhibited a 20 times stronger capacity for regulating the electron transfer rate than C. reinhardtii under Zn stress. The light energy utilization efficiency (α) of Chlamydomonas sp. 1710 had the most highly non-linear correlation with μ, indicating the energy utilization and regulation process of Chlamydomonas sp. 1710 was well protected under Zn stress. Collectively, our findings demonstrate that the photosystem of Chlamydomonas sp. 1710 is much more resilient and tolerant than that of C. reinhardtii under Zn stress.
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Affiliation(s)
- Di Zhan
- Center for Geomicrobiology and Biogeochemistry Research, State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, China
- School of Earth Sciences and Resources, China University of Geosciences, Beijing, China
| | - Yue Liu
- Center for Geomicrobiology and Biogeochemistry Research, State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, China
- School of Water Resources and Environment, China University of Geosciences, Beijing, China
| | - Na Yu
- Center for Geomicrobiology and Biogeochemistry Research, State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, China
- School of Water Resources and Environment, China University of Geosciences, Beijing, China
| | - Chunbo Hao
- Center for Geomicrobiology and Biogeochemistry Research, State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, China
- School of Water Resources and Environment, China University of Geosciences, Beijing, China
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21
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Almeida-Saá AC, Umanzor S, Zertuche-González JA, Cruz-López R, Muñiz-Salazar R, Ferreira-Arrieta A, Bonet Melià P, García-Pantoja JA, Rangel-Mendoza LK, Vivanco-Bercovich M, Ruiz-Montoya L, Guzmán-Calderón JM, Sandoval-Gil JM. Bathymetric origin shapes the physiological responses of Pterygophora californica (Laminariales, Phaeophyceae) to deep marine heatwaves. JOURNAL OF PHYCOLOGY 2024; 60:483-502. [PMID: 38264946 DOI: 10.1111/jpy.13433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 12/19/2023] [Accepted: 01/09/2024] [Indexed: 01/25/2024]
Abstract
Kelp communities are experiencing exacerbated heat-related impacts from more intense, frequent, and deeper marine heatwaves (MHWs), imperiling the long-term survival of kelp forests in the climate change scenario. The occurrence of deep thermal anomalies is of critical importance, as elevated temperatures can impact kelp populations across their entire bathymetric range. This study evaluates the impact of MHWs on mature sporophytes of Pterygophora californica (walking kelp) from the bathymetric extremes (8-10 vs. 25-27 m) of a population situated in Baja California (Mexico). The location is near the southernmost point of the species's broad distribution (from Alaska to Mexico). The study investigated the ecophysiological responses (e.g., photobiology, nitrate uptake, oxidative stress) and growth of adult sporophytes through a two-phase experiment: warming simulating a MHW and a post-MHW phase without warming. Generally, the effects of warming differed depending on the bathymetric origin of the sporophytes. The MHW facilitated essential metabolic functions of deep-water sporophytes, including photosynthesis, and promoted their growth. In contrast, shallow-water sporophytes displayed metabolic stress, reduced growth, and oxidative damage. Upon the cessation of warming, certain responses, such as a decline in nitrate uptake and net productivity, became evident in shallow-water sporophytes, implying a delay in heat-stress response. This indicates that variation in temperatures can result in more prominent effects than warming alone. The greater heat tolerance of sporophytes in deeper waters shows convincing evidence that deep portions of P. californica populations have the potential to serve as refuges from the harmful impacts of MHWs on shallow reefs.
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Affiliation(s)
- Antonella C Almeida-Saá
- Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California, Ensenada, Mexico
| | - Schery Umanzor
- College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Juneau, Alaska, USA
| | | | - Ricardo Cruz-López
- Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California, Ensenada, Mexico
| | - Raquel Muñiz-Salazar
- Escuela de Ciencias de la Salud, Universidad Autónoma de Baja California, Ensenada, Mexico
| | | | - Paula Bonet Melià
- Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California, Ensenada, Mexico
| | | | - Laura K Rangel-Mendoza
- Centro de Investigación Científica y de Educación Superior de Ensenada, Ensenada, Mexico
| | - Manuel Vivanco-Bercovich
- Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California, Ensenada, Mexico
| | - Leonardo Ruiz-Montoya
- Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California, Ensenada, Mexico
| | | | - Jose Miguel Sandoval-Gil
- Instituto de Investigaciones Oceanológicas, Universidad Autónoma de Baja California, Ensenada, Mexico
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22
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Kim D, Guadagno CR, Ewers BE, Mackay DS. Combining PSII photochemistry and hydraulics improves predictions of photosynthesis and water use from mild to lethal drought. PLANT, CELL & ENVIRONMENT 2024; 47:1255-1268. [PMID: 38178610 DOI: 10.1111/pce.14806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 12/10/2023] [Accepted: 12/20/2023] [Indexed: 01/06/2024]
Abstract
Rising temperatures and increases in drought negatively impact the efficiency and sustainability of both agricultural and forest ecosystems. Although hydraulic limitations on photosynthesis have been extensively studied, a solid understanding of the links between whole plant hydraulics and photosynthetic processes at the cellular level under changing environmental conditions is still missing, hampering our predictive power for plant mortality. Here, we examined plant hydraulic traits and CO2 assimilation rate under progressive water limitation by implementing Photosystem II (PSII) dynamics with a whole plant process model (TREES). The photosynthetic responses to plant water status were parameterized based on measurements of chlorophyll a fluorescence, gas exchange and water potential for Brassica rapa (R500) grown in a greenhouse under fully watered to lethal drought conditions. The updated model significantly improved predictions of photosynthesis, stomatal conductance and leaf water potential. TREES with PSII knowledge predicted a larger hydraulic safety margin and a decrease in percent loss of conductivity. TREES predicted a slower decrease in leaf water potential, which agreed with measurements. Our results highlight the pressing need for incorporating PSII drought photochemistry into current process models to capture cross-scale plant water dynamics from cell to whole plant level.
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Affiliation(s)
- Dohyoung Kim
- Department of Geography, State University of New York at Buffalo, Buffalo, New York, USA
| | | | - Brent E Ewers
- Department of Botany, University of Wyoming, Laramie, Wyoming, USA
| | - D Scott Mackay
- Department of Geography, State University of New York at Buffalo, Buffalo, New York, USA
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23
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Ofori S, Abebrese DK, Klement A, Provazník D, Tomášková I, Růžičková I, Wanner J. Impact of treated wastewater on plant growth: leaf fluorescence, reflectance, and biomass-based assessment. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2024; 89:1647-1664. [PMID: 38619895 DOI: 10.2166/wst.2024.097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 03/15/2024] [Indexed: 04/17/2024]
Abstract
The study evaluated the impact of treated wastewater on plant growth through the use of hyperspectral and fluorescence-based techniques coupled with classical biomass analyses, and assessed the potential of reusing treated wastewater for irrigation without fertilizer application. Cherry tomato (Solanum lycopersicum) and cabbage (Brassica oleracea L.) were irrigated with tap water (Tap), secondary effluent (SE), and membrane effluent (ME). Maximum quantum yield of photosystem II (Fv/Fm) of tomato and cabbage was between 0.78 to 0.80 and 0.81 to 0.82, respectively, for all treatments. The performance index (PI) of Tap/SE/ME was 2.73, 2.85, and 2.48 for tomatoes and 4.25, 3.79, and 3.70 for cabbage, respectively. Both Fv/Fm and PI indicated that the treated wastewater did not have a significant adverse effect on the photosynthetic efficiency and plant vitality of the crops. Hyperspectral analysis showed higher chlorophyll and nitrogen content in leaves of recycled water-irrigated crops than tap water-irrigated crops. SE had 10.5% dry matter composition (tomato) and Tap had 10.7% (cabbage). Total leaf count of Tap/SE/ME was 86, 111, and 102 for tomato and 37, 40, and 42 for cabbage, respectively. In this study, the use of treated wastewater did not induce any photosynthetic-related or abiotic stress on the crops; instead, it promoted crop growth.
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Affiliation(s)
- Solomon Ofori
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Prague 6 - Dejvice, Prague, Czech Republic E-mail:
| | - David Kwesi Abebrese
- Department of Water Resources, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, 165 00 Prague 6 - Suchdol, Prague, Czech Republic
| | - Aleš Klement
- Department of Soil Science and Soil Protection, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, 165 00 Prague 6 - Suchdol, Prague, Czech Republic
| | - Daniel Provazník
- Department of Genetics and Physiology of Forest Trees, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 129, 165 21 Prague 6 - Suchdol, Prague, Czech Republic
| | - Ivana Tomášková
- Department of Genetics and Physiology of Forest Trees, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Kamýcká 129, 165 21 Prague 6 - Suchdol, Prague, Czech Republic
| | - Iveta Růžičková
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Prague 6 - Dejvice, Prague, Czech Republic
| | - Jiří Wanner
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Prague 6 - Dejvice, Prague, Czech Republic
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24
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Smith KE, Cowan L, Taylor B, McAusland L, Heatley M, Yant L, Murchie EH. Physiological adaptation to irradiance in duckweeds is species and accession specific and depends on light habitat niche. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:2046-2063. [PMID: 38217537 DOI: 10.1093/jxb/erad499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 01/09/2024] [Indexed: 01/15/2024]
Abstract
Duckweeds span 36 species of free-floating aquatic organisms with body sizes ranging from 2 mm to 10 mm, where each plant body plan is reduced to a largely leaf-like structure. As an emerging crop, their fast growth rates offer potential for cultivation in closed systems. We describe a novel UK collection derived from low light (dLL) or high light (dHL) habitats, profiled for growth, photosynthesis, and photoprotection (non-photochemical quenching, NPQ) responses. Twenty-three accessions of three Lemna species and one Spirodela polyrhiza were grown under relatively low light (LL: 100 μmol m-2 s-1) and high light (HL: 350 μmol m-2 s-1) intensities. We observed broad within- and between-species level variation in photosynthesis acclimation. Duckweeds grown under HL exhibited a lower growth rate, biomass, chlorophyll, and quantum yield of photosynthesis. In HL compared with LL, carotenoid de-epoxidation state and NPQ were higher, whilst PSII efficiency (φPSII) and Chl a:b ratios were unchanged. The dLL plants showed relatively stronger acclimation to HL compared with dHL plants, especially Lemna japonica accessions. These achieved faster growth in HL with concurrent higher carotenoid levels and NPQ, and less degradation of chlorophyll. We conclude that these data support local adaptation to the light environment in duckweed affecting acclimation in controlled conditions.
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Affiliation(s)
- Kellie E Smith
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
- School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Laura Cowan
- School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Beth Taylor
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Lorna McAusland
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Matthew Heatley
- School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Levi Yant
- School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK
| | - Erik H Murchie
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
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25
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Zhang X, Xu H, She Y, Hu C, Zhu T, Wang L, Wu L, You C, Ke J, Zhang Q, He H. Improving the prediction performance of leaf water content by coupling multi-source data with machine learning in rice (Oryza sativa L.). PLANT METHODS 2024; 20:48. [PMID: 38521920 PMCID: PMC10960999 DOI: 10.1186/s13007-024-01168-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 02/28/2024] [Indexed: 03/25/2024]
Abstract
BACKGROUND Leaf water content (LWC) significantly affects rice growth and development. Real-time monitoring of rice leaf water status is essential to obtain high yield and water use efficiency of rice plants with precise irrigation regimes in rice fields. Hyperspectral remote sensing technology is widely used in monitoring crop water status because of its rapid, nondestructive, and real-time characteristics. Recently, multi-source data have been attempted to integrate into a monitored model of crop water status based on spectral indices. However, there are fewer studies using spectral index model coupled with multi-source data for monitoring LWC in rice plants. Therefore, 2-year field experiments were conducted with three irrigation regimes using four rice cultivars in this study. The multi-source data, including canopy ecological factors and physiological parameters, were incorporated into the vegetation index to accurately predict LWC in rice plants. RESULTS The results presented that the model accuracy of rice LWC estimation after combining data from multiple sources improved by 6-44% compared to the accuracy of a single spectral index normalized difference index (ND). Additionally, the optimal prediction accuracy of rice LWC was produced using a machine algorithm of gradient boosted decision tree (GBDT) based on the combination of ND(1287,1673) and crop water stress index (CWSI) (R2 = 0.86, RMSE = 0.01). CONCLUSIONS The machine learning estimation model constructed based on multi-source data fully utilizes the spectral information and considers the environmental changes in the crop canopy after introducing multi-source data parameters, thus improving the performance of spectral technology for monitoring rice LWC. The findings may be helpful to the water status diagnosis and accurate irrigation management of rice plants.
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Affiliation(s)
- Xuenan Zhang
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Haocong Xu
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Yehong She
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Chao Hu
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Tiezhong Zhu
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Lele Wang
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Liquan Wu
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China.
- Collaborative Innovation Center for Modern Crop Production Co-Sponsored by Province and Ministry (CIC-MCP), Nanjing, 210095, Jiangsu, People's Republic of China.
| | - Cuicui You
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
- Yingshang Agricultural Green Development Promotion Center, Fuyang, 236200, Anhui, People's Republic of China
| | - Jian Ke
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
- Yingshang Agricultural Green Development Promotion Center, Fuyang, 236200, Anhui, People's Republic of China
| | - Qiangqiang Zhang
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China
| | - Haibing He
- Agricultural College, Anhui Agricultural University, Hefei, 230036, Anhui, People's Republic of China.
- Yingshang Agricultural Green Development Promotion Center, Fuyang, 236200, Anhui, People's Republic of China.
- Germplasm Creation and Application Laboratory of Grain and Oil Crops in Wanjiang Plain, Enterprise Key Laboratory of Ministry of Agriculture and Rural Affairs, Tongling, 244002, China.
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26
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Sengupta A, Bandyopadhyay A, Sarkar D, Hendry JI, Schubert MG, Liu D, Church GM, Maranas CD, Pakrasi HB. Genome streamlining to improve performance of a fast-growing cyanobacterium Synechococcus elongatus UTEX 2973. mBio 2024; 15:e0353023. [PMID: 38358263 PMCID: PMC10936165 DOI: 10.1128/mbio.03530-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 01/22/2024] [Indexed: 02/16/2024] Open
Abstract
Cyanobacteria are photosynthetic organisms that have garnered significant recognition as potential hosts for sustainable bioproduction. However, their complex regulatory networks pose significant challenges to major metabolic engineering efforts, thereby limiting their feasibility as production hosts. Genome streamlining has been demonstrated to be a successful approach for improving productivity and fitness in heterotrophs but is yet to be explored to its full potential in phototrophs. Here, we present the systematic reduction of the genome of the cyanobacterium exhibiting the fastest exponential growth, Synechococcus elongatus UTEX 2973. This work, the first of its kind in a photoautotroph, involved an iterative process using state-of-the-art genome-editing technology guided by experimental analysis and computational tools. CRISPR-Cas3 enabled large, progressive deletions of predicted dispensable regions and aided in the identification of essential genes. The large deletions were combined to obtain a strain with 55-kb genome reduction. The strains with streamlined genome showed improvement in growth (up to 23%) and productivity (by 22.7%) as compared to the wild type (WT). This streamlining strategy not only has the potential to develop cyanobacterial strains with improved growth and productivity traits but can also facilitate a better understanding of their genome-to-phenome relationships.IMPORTANCEGenome streamlining is an evolutionary strategy used by natural living systems to dispense unnecessary genes from their genome as a mechanism to adapt and evolve. While this strategy has been successfully borrowed to develop synthetic heterotrophic microbial systems with desired phenotype, it has not been extensively explored in photoautotrophs. Genome streamlining strategy incorporates both computational predictions to identify the dispensable regions and experimental validation using genome-editing tool, and in this study, we have employed a modified strategy with the goal to minimize the genome size to an extent that allows optimal cellular fitness under specified conditions. Our strategy has explored a novel genome-editing tool in photoautotrophs, which, unlike other existing tools, enables large, spontaneous optimal deletions from the genome. Our findings demonstrate the effectiveness of this modified strategy in obtaining strains with streamlined genome, exhibiting improved fitness and productivity.
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Affiliation(s)
- Annesha Sengupta
- Department of Biology, Washington University, St. Louis, Missouri, USA
| | | | - Debolina Sarkar
- Department of Chemical Engineering, Pennsylvania State University, State College, Pennsylvania, USA
| | - John I. Hendry
- Department of Chemical Engineering, Pennsylvania State University, State College, Pennsylvania, USA
| | - Max G. Schubert
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, Massachusetts, USA
| | - Deng Liu
- Department of Biology, Washington University, St. Louis, Missouri, USA
| | - George M. Church
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Cambridge, Massachusetts, USA
- Department of Genetics, Harvard Medical School, Boston, Massachusetts, USA
| | - Costas D. Maranas
- Department of Chemical Engineering, Pennsylvania State University, State College, Pennsylvania, USA
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27
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Zhang DJ, Tong CL, Wang QS, Bie S. Mycorrhizas Affect Physiological Performance, Antioxidant System, Photosynthesis, Endogenous Hormones, and Water Content in Cotton under Salt Stress. PLANTS (BASEL, SWITZERLAND) 2024; 13:805. [PMID: 38592780 PMCID: PMC10975513 DOI: 10.3390/plants13060805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 02/15/2024] [Accepted: 02/21/2024] [Indexed: 04/11/2024]
Abstract
Saline-alkali stress seriously endangers the normal growth of cotton (Gossypium hirsutum). Arbuscular mycorrhizal fungi (AMF) could enhance salt tolerance by establishing symbiotic relationships with plants. Based on it, a pot experiment was conducted to simulate a salt environment in which cotton was inoculated with Paraglomus occultum to explore its effects on the saline-alkali tolerance of cotton. Our results showed that salt stress noticeably decreased cotton seedling growth parameters (such as plant height, number of leaves, dry weight, root system architecture, etc.), while AMF exhibited a remarkable effect on promoting growth. It was noteworthy that AMF significantly mitigated the inhibitory effect of salt on cotton seedlings. However, AMF colonization in root and soil hyphal length were collectively descended via salt stress. With regard to osmotic regulating substances, Pro and MDA values in roots were significantly increased when seedlings were exposed to salt stress, while AMF only partially mitigated these reactions. Salt stress increased ROS levels in the roots of cotton seedlings and enhanced antioxidant enzyme activity (SOD, POD, and CAT), while AMF mitigated the increases in ROS levels but further strengthened antioxidant enzyme activity. AMF inoculation increased the photosynthesis parameters of cotton seedling leaves to varying degrees, while salt stress decreased them dramatically. When inoculated with AMF under a salt stress environment, only partial mitigation of these photosynthesis values was observed. Under saline-alkali stress, AMF improved the leaf fluorescence parameters (φPSII, Fv'/Fm', and qP) of cotton seedlings, leaf chlorophyll levels, and root endogenous hormones (IAA and BR); promoted the absorption of water; and maintained nitrogen balance, thus alleviating the damage from salt stress on the growth of cotton plants to some extent. In summary, mycorrhizal cotton seedlings may exhibit mechanisms involving root system architecture, the antioxidant system, photosynthesis, leaf fluorescence, endogenous hormones, water content, and nitrogen balance that increase their resistance to saline-alkali environments. This study provide a theoretical basis for further exploring the application of AMF to enhance the salt tolerance of cotton.
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Affiliation(s)
- De-Jian Zhang
- Key Laboratory of Cotton Biology and Breeding in the Middle Reaches of the Yangtze River, Ministry of Agriculture, Industrial Crops Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China;
- Hubei Key Laboratory of Waterlogging Disaster and Agricultural Use of Wetland, College of Horticulture and Gardening, Yangtze University, Jingzhou 434023, China
| | - Cui-Ling Tong
- Jingzhou Institute of Technology, Jingzhou 434020, China
| | - Qiong-Shan Wang
- Key Laboratory of Cotton Biology and Breeding in the Middle Reaches of the Yangtze River, Ministry of Agriculture, Industrial Crops Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China;
| | - Shu Bie
- Key Laboratory of Cotton Biology and Breeding in the Middle Reaches of the Yangtze River, Ministry of Agriculture, Industrial Crops Institute, Hubei Academy of Agricultural Sciences, Wuhan 430064, China;
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28
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Katuuramu DN, Levi A, Wechter WP. Mapping the genetic architecture of low-temperature stress tolerance in citron watermelon. THE PLANT GENOME 2024:e20443. [PMID: 38462711 DOI: 10.1002/tpg2.20443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 12/02/2023] [Accepted: 02/07/2024] [Indexed: 03/12/2024]
Abstract
Sweet-fleshed watermelon (Citrullus lanatus) is an important vegetable crop of the tropical origin. It is widely grown and consumed around the world for its hydration and nutritional quality values. Low-temperature stress can affect early planting, seedling establishment, and expansion of crop production to new areas. A collection of 122 citron watermelon (Citrullus amarus) accessions were obtained from the USDA's National Plant Germplasm Repository System gene bank in Griffin, GA. The accessions were genotyped using whole genome resequencing to generate single nucleotide polymorphisms (SNPs) molecular markers and screened under cold-stressed and non-stressed control conditions. Four low-temperature stress tolerance related traits including shoot biomass, vine length, maximum quantum efficiency of photosystem II, and chlorophyll content were measured under cold-stressed and non-stressed control treatment conditions. Correlation analysis revealed the presence of positive relationships among traits. Broad-sense heritability for all traits ranged from 0.35 to 0.73, implying the presence of genetic contributions to the observed phenotypic variation. Genomic regions underlying these traits across several citron watermelon chromosomes were identified. Four low-temperature stress tolerance related putative candidate genes co-located with the peak SNPs from genome-wide association study. These genomic regions and marker information could potentially be used in molecular breeding to accelerate genetic improvements for low-temperature stress tolerance in watermelon.
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Affiliation(s)
| | - Amnon Levi
- USDS-ARS, U.S. Vegetable Laboratory, Charleston, South Carolina, USA
| | - William P Wechter
- USDS-ARS, U.S. Vegetable Laboratory, Charleston, South Carolina, USA
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29
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Candido-Ribeiro R, Aitken SN. Weak local adaptation to drought in seedlings of a widespread conifer. THE NEW PHYTOLOGIST 2024; 241:2395-2409. [PMID: 38247230 DOI: 10.1111/nph.19543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 01/02/2024] [Indexed: 01/23/2024]
Abstract
Tree seedlings from populations native to drier regions are often assumed to be more drought tolerant than those from wetter provenances. However, intraspecific variation in drought tolerance has not been well-characterized despite being critical for developing climate change mitigation and adaptation strategies, and for predicting the effects of drought on forests. We used a large-scale common garden drought-to-death experiment to assess range-wide variation in drought tolerance, measured by decline of photosynthetic efficiency, growth, and plastic responses to extreme summer drought in seedlings of 73 natural populations of the two main varieties of Douglas-fir (Pseudotsuga menziesii var. menziesii and var. glauca). Local adaptation to drought was weak in var. glauca and nearly absent in menziesii. Var. glauca showed higher tolerance to drought but slower growth than var. menziesii. Clinal variation in drought tolerance and growth species-wide was mainly associated with temperature rather than precipitation. A higher degree of plasticity for growth was observed in var. menziesii in response to extreme drought. Genetic variation for drought tolerance in seedlings within varieties is maintained primarily within populations. Selective breeding within populations may facilitate adaptation to drought more than assisted gene flow.
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Affiliation(s)
- Rafael Candido-Ribeiro
- Department of Forest and Conservation Sciences, Centre for Forest Conservation Genetics, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Sally N Aitken
- Department of Forest and Conservation Sciences, Centre for Forest Conservation Genetics, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
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Basavaraj PS, Jangid KK, Babar R, Rane J, Boraiah KM, Harisha CB, Halli H, Pradhan A, Tripathi K, Sammi Reddy K, Prabhakar M. Non-invasive measurements to identify mungbean genotypes for waterlogging tolerance. PeerJ 2024; 12:e16872. [PMID: 38410803 PMCID: PMC10896077 DOI: 10.7717/peerj.16872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 01/10/2024] [Indexed: 02/28/2024] Open
Abstract
As the best-fit leguminous crop for intercropping across time and space, mungbean promises to sustain soil health, carbon sequestration, and nutritional security across the globe. However, it is susceptible to waterlogging, a significant constraint that persists during heavy rains. Since the predicted climate change scenario features fewer but more intense rainy days. Hence, waterlogging tolerance in mungbean has been one of the major breeding objectives. The present experiment aimed to employ non-destructive tools to phenotype stress tolerance traits in mungbean genotypes exposed to waterlogging and estimate the association among the traits. A total of 12 mungbean genotypes were used in the present study to assess waterlogging tolerance at the seedling stage. Plant responses to stress were determined non-destructively using normalized difference vegetation index (NDVI) and chlorophyll fluorescence parameters at different time intervals. NDVI and grain yield were positively associated with control (r = 0.64) and stress (r = 0.59). Similarly, chlorophyll fluorescence (quantum yield of PS-II) also had a significant positive association with grain yield under both control (r = 0.52) and stress (r = 0.66) conditions. Hence, it is suggested that NDVI and chlorophyll fluorescence promise to serve as traits for non-destructive phenotyping waterlogging tolerance in mungbean genotypes. With the methods proposed in our study, it is possible to phenotype hundreds of plants for waterlogging tolerance efficiently.
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Affiliation(s)
- P S Basavaraj
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | | | - Rohit Babar
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | - Jagadish Rane
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
- ICAR-Central Institute for Arid Horticulture, Bikaner, India
| | - K M Boraiah
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | - C B Harisha
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | - Hanamanth Halli
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | - Aliza Pradhan
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | - Kuldeep Tripathi
- ICAR-National Bureau of Plant Genetic Resources, New Delhi, India
| | - K Sammi Reddy
- ICAR-National Institute of Abiotic Stress Management, Baramati, Baramati, India
| | - M Prabhakar
- ICAR-Central Research Institute for Dryland Agriculture, Hyderabad, India
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Wu G, Guan K, Kimm H, Miao G, Yang X, Jiang C. Ground far-red sun-induced chlorophyll fluorescence and vegetation indices in the US Midwestern agroecosystems. Sci Data 2024; 11:228. [PMID: 38388559 PMCID: PMC10883924 DOI: 10.1038/s41597-024-03004-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 01/26/2024] [Indexed: 02/24/2024] Open
Abstract
Sun-induced chlorophyll fluorescence (SIF) provides an opportunity to study terrestrial ecosystem photosynthesis dynamics. However, the current coarse spatiotemporal satellite SIF products are challenging for mechanistic interpretations of SIF signals. Long-term ground SIF and vegetation indices (VIs) are important for satellite SIF validation and mechanistic understanding of the relationship between SIF and photosynthesis when combined with leaf- and canopy-level auxiliary measurements. In this study, we present and analyze a total of 15 site-years of ground far-red SIF (SIF at 760 nm, SIF760) and VIs datasets from soybean, corn, and miscanthus grown in the U.S. Corn Belt from 2016 to 2021. We introduce a comprehensive data processing protocol, including different retrieval methods, calibration coefficient adjustment, and nadir SIF footprint upscaling to match the eddy covariance footprint. This long-term ground far-red SIF and VIs dataset provides important and first-hand data for far-red SIF interpretation and understanding the mechanistic relationship between far-red SIF and canopy photosynthesis across various crop species and environmental conditions.
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Affiliation(s)
- Genghong Wu
- Agroecosystem Sustainability Center, Institute for Sustainability, Energy, and Environment, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Natural Resources and Environmental Sciences, College of Agricultural, Consumers, and Environmental Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, IL, 61801, USA
| | - Kaiyu Guan
- Agroecosystem Sustainability Center, Institute for Sustainability, Energy, and Environment, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Department of Natural Resources and Environmental Sciences, College of Agricultural, Consumers, and Environmental Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, IL, 61801, USA.
- National Center of Supercomputing Applications, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
| | - Hyungsuk Kimm
- Department of Natural Resources and Environmental Sciences, College of Agricultural, Consumers, and Environmental Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea
| | - Guofang Miao
- Department of Natural Resources and Environmental Sciences, College of Agricultural, Consumers, and Environmental Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Xi Yang
- Department of Environmental Sciences, University of Virginia, Charlottesville, VA, 22903, USA
| | - Chongya Jiang
- Agroecosystem Sustainability Center, Institute for Sustainability, Energy, and Environment, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Natural Resources and Environmental Sciences, College of Agricultural, Consumers, and Environmental Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- DOE Center for Advanced Bioenergy and Bioproducts Innovation, Urbana, IL, 61801, USA
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Rys M, Miastkowska M, Łętocha A, Wajs-Bonikowska A, Lorenzo P, Synowiec A. The effect of caraway oil-loaded bio-nanoemulsions on the growth and performance of barnyard grass and maize. Sci Rep 2024; 14:4313. [PMID: 38383733 PMCID: PMC10881981 DOI: 10.1038/s41598-024-54721-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 02/15/2024] [Indexed: 02/23/2024] Open
Abstract
A proper formulation is crucial to improve the herbicidal effects of essential oils and their selectivity. In this study, we investigated the physicochemical properties of bio-based nanoemulsions (CNs) containing several concentrations of caraway (Carum carvi) essential oil stabilized with Eco Tween 80, as a surfactant, maintaining 1:1 proportions. Detailed physicochemical characteristics of the CNs revealed that their properties were most desired at 2% of the oil and surfactant, i.e., the smallest droplet size, polydispersity index, and viscosity. The CNs caused biochemical changes in maize and barnyard grass (Echinochloa crus-galli) seedlings, however, to a different extent. Barnyard grass has overall metabolism (measured as a thermal power) decreased by 39-82% when exposed to the CNs. The CNs triggered changes in the content and composition of carbohydrates in the endosperm of both species' seedlings in a dose-response manner. The foliar application of CNs caused significant damage to tissues of young maize and barnyard grass plants. The effective dose of the CN (ED50, causing a 50% damage) was 5% and 17.5% oil in CN for barnyard grass and maize tissues, respectively. Spraying CNs also decreased relative water content in leaves and affected the efficiency of photosynthesis by disturbing the electron transport chain. We found that barnyard grass was significantly more susceptible to the foliar application of CNs than maize, which could be used to selectively control this species in maize crops. However, further studies are needed to verify this hypothesis under field conditions.
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Affiliation(s)
- Magdalena Rys
- The Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Niezapominajek 21, 30-239, Krakow, Poland
| | - Małgorzata Miastkowska
- Faculty of Chemical Engineering and Technology, Department of Organic Chemistry and Technology, Cracow University of Technology, 31-155, Krakow, Poland
| | - Anna Łętocha
- Faculty of Chemical Engineering and Technology, Department of Organic Chemistry and Technology, Cracow University of Technology, 31-155, Krakow, Poland
| | - Anna Wajs-Bonikowska
- Department of Biotechnology and Food Science, Lodz University of Technology, 90-530, Lodz, Poland
| | - Paula Lorenzo
- Department of Life Sciences, Centre for Functional Ecology (CFE)-Science for People & the Planet, Associate Laboratory TERRA, University of Coimbra, 3000-456, Coimbra, Portugal
| | - Agnieszka Synowiec
- Department of Agroecology and Plant Production, The University of Agriculture in Krakow, 31-120, Krakow, Poland.
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Renó V, Cardellicchio A, Romanjenko BC, Guadagno CR. AI-assisted image analysis and physiological validation for progressive drought detection in a diverse panel of Gossypium hirsutum L. FRONTIERS IN PLANT SCIENCE 2024; 14:1305292. [PMID: 38449576 PMCID: PMC10915054 DOI: 10.3389/fpls.2023.1305292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Accepted: 12/21/2023] [Indexed: 03/08/2024]
Abstract
Introduction Drought detection, spanning from early stress to severe conditions, plays a crucial role in maintaining productivity, facilitating recovery, and preventing plant mortality. While handheld thermal cameras have been widely employed to track changes in leaf water content and stomatal conductance, research on thermal image classification remains limited due mainly to low resolution and blurry images produced by handheld cameras. Methods In this study, we introduce a computer vision pipeline to enhance the significance of leaf-level thermal images across 27 distinct cotton genotypes cultivated in a greenhouse under progressive drought conditions. Our approach involved employing a customized software pipeline to process raw thermal images, generating leaf masks, and extracting a range of statistically relevant thermal features (e.g., min and max temperature, median value, quartiles, etc.). These features were then utilized to develop machine learning algorithms capable of assessing leaf hydration status and distinguishing between well-watered (WW) and dry-down (DD) conditions. Results Two different classifiers were trained to predict the plant treatment-random forest and multilayer perceptron neural networks-finding 75% and 78% accuracy in the treatment prediction, respectively. Furthermore, we evaluated the predicted versus true labels based on classic physiological indicators of drought in plants, including volumetric soil water content, leaf water potential, and chlorophyll a fluorescence, to provide more insights and possible explanations about the classification outputs. Discussion Interestingly, mislabeled leaves mostly exhibited notable responses in fluorescence, water uptake from the soil, and/or leaf hydration status. Our findings emphasize the potential of AI-assisted thermal image analysis in enhancing the informative value of common heterogeneous datasets for drought detection. This application suggests widening the experimental settings to be used with deep learning models, designing future investigations into the genotypic variation in plant drought response and potential optimization of water management in agricultural settings.
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Affiliation(s)
- Vito Renó
- Institute of Intelligent Industrial Technologies and Systems for Advanced Manufacturing, National Research Council of Italy (CNR STIIMA), Bari, Italy
| | - Angelo Cardellicchio
- Institute of Intelligent Industrial Technologies and Systems for Advanced Manufacturing, National Research Council of Italy (CNR STIIMA), Bari, Italy
| | | | - Carmela Rosaria Guadagno
- Department of Botany, University of Wyoming, Laramie, WY, United States
- Science Initiative, University of Wyoming, Laramie, WY, United States
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Stefanatou A, Markoulatou E, Koukmenidis I, Vouzi L, Petousi I, Stasinakis AS, Rizzo A, Masi F, Akriotis T, Fountoulakis MS. Use of ornamental plants in floating treatment wetlands for greywater treatment in urban areas. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169448. [PMID: 38135068 DOI: 10.1016/j.scitotenv.2023.169448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 09/27/2023] [Accepted: 12/15/2023] [Indexed: 12/24/2023]
Abstract
Floating treatment wetlands are considered a promising and low-cost technology for the treatment of polluted water and wastewater. However, their functionality and efficiency in different types of wastewater are not fully understood. In this study, several ornamental plant species (monocultures: Canna sp., Iris sp., polyculture: Iris orientalis, Cyperus sp., Acorus gramineus) were tested in two different types of floating mats, including a media supported floating mat (MSFM) or a simple plastic grid, and evaluated for optimal removal of the studied pollutants. The results regarding pollutant removal revealed that planted systems grown in MSFM achieved significantly higher removal rates (up to 90 %) compared to the plastic grid (up to 80 %). Statistically significant higher removal rates were obtained for the planted systems compared to the unplanted systems either grown in MSFM (for turbidity (planted: 82-90 %; unplanted: 44 %), COD (planted: 74-84 %; unplanted: 32 %) and BOD5 (planted: 76-85 %; unplanted: 51 %), respectively) or grown in the plastic grid (for turbidity (planted: 64-78 %; unplanted: 44 %) and COD (planted: 43-75 %; unplanted: 32 %), respectively). During the experimental period (7 months), all plants managed to survive and withstand the weather variations. The plants in polyculture followed by Iris sp. plants in plastic grid floating mats were better adapted, as indicated by maximum quantum efficiency of PSII values and chlorophyll content index, while all the plants were considered well adapted in the MSFM. Overall, the implementation of floating treatment wetlands with ornamental vegetation for greywater treatment in urban areas seems to be a sustainable and efficient approach.
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Affiliation(s)
- Aimilia Stefanatou
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece.
| | | | - Ilias Koukmenidis
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
| | - Lydia Vouzi
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
| | - Ioanna Petousi
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
| | | | | | - Fabio Masi
- IRIDRA Srl, via La Marmora 51, 50121 Florence, Italy
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Chen J, Guo Y, Tan J. Dynamic Analysis of Chlorophyll a Fluorescence in Response to Time-Variant Excitations during Strong Actinic Illumination and Application in Probing Plant Water Loss. PLANT PHENOMICS (WASHINGTON, D.C.) 2024; 6:0151. [PMID: 38370572 PMCID: PMC10870241 DOI: 10.34133/plantphenomics.0151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2023] [Accepted: 01/16/2024] [Indexed: 02/20/2024]
Abstract
Magnitude measurement of chlorophyll a fluorescence (ChlF) involves challenges, and dynamic responses to variable excitations may offer an alternative. In this research, ChlF was measured during strong actinic light by using a pseudo-random binary sequence as a time-variant multiple-frequency illumination excitation. The responses were observed in the time domain but were primarily analyzed in the frequency domain in terms of amplitude gain variations. The excitation amplitude was varied, and moisture loss was used to induce changes in the plant samples for further analysis. The results show that when nonphotochemical quenching (NPQ) activities start, the amplitude of ChlF responses vary, making the ChlF responses to illumination excitations nonlinear and nonstationary. NPQ influences the ChlF responses in low frequencies, most notably below 0.03 rad/s. The low-frequency gain is linearly correlated with NPQ and can thus be used as a reference to compensate for the variations in ChlF measurements. The high-frequency amplitude gain showed a stronger correlation with moisture loss after correction with the low-frequency gain. This work demonstrates the usefulness of dynamic characteristics in broadening the applications of ChlF measurements in plant analysis and offers a way to mitigate variabilities in ChlF measurements during strong actinic illumination.
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Affiliation(s)
- Junqing Chen
- Department of Chemical and Biomedical Engineering,
University of Missouri, Columbia, MO, USA
| | - Ya Guo
- School of IOT,
Jiangnan University, Wuxi, Jiangsu, China
| | - Jinglu Tan
- Department of Chemical and Biomedical Engineering,
University of Missouri, Columbia, MO, USA
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Li T, Shen T, Shi K, Zhang Y. Transcriptome analysis reveals the effect of propyl gallate on kiwifruit callus formation. PLANT CELL REPORTS 2024; 43:60. [PMID: 38334781 DOI: 10.1007/s00299-024-03140-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Accepted: 12/31/2023] [Indexed: 02/10/2024]
Abstract
KEY MESSAGE Exploring the potential action mechanisms of reactive oxygen species during the callus inducing, they can activate specific metabolic pathways in explants to regulate callus development. Reactive oxygen species (ROS) play an important role in the regulation of plant growth and development, but the mechanism of their action on plant callus formation remains to be elucidated. To address this question, kiwifruit was selected as the explant for callus induction, and the influence of ROS on callus formation was investigated by introducing propyl gallate (PG) as an antioxidant into the medium used for inducing callus. The results have unveiled that the inclusion of PG in the medium has disturbed the equilibrium of ROS during the formation of the kiwifruit callus. We selected the callus that was induced by the addition of 0.05 mmol/L PG to the MS medium. The callus exhibited a significant difference in the amount compared to the control medium without PG. The callus induced by the MS medium without PG was used as the control for comparison. KEGG enrichment indicated that PG exposure resulted in significant differences in gene expression in related pathways, such as phytohormone signaling and glutathione in kiwifruit callus. Weighted gene co-expression analysis indicated that the pertinent regulatory networks of both ROS and phytohormone signaling were critical for the establishment of callus in kiwifruit leaves. In addition, during the process of callus establishment, the ROS level of the explants was also closely related to the genes for transmembrane transport of substances, cell wall formation, and plant organ establishment. This investigation expands the theory of ROS-regulated callus formation and presents a new concept for the expeditious propagation of callus in kiwifruit.
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Affiliation(s)
- Tianyuan Li
- School of Life Sciences, Yunnan Normal University, Kunming, 650500, China
| | - Tin Shen
- School of Life Sciences, Yunnan Normal University, Kunming, 650500, China
| | - Kai Shi
- School of Life Sciences, Yunnan Normal University, Kunming, 650500, China
| | - Yunfeng Zhang
- School of Life Sciences, Yunnan Normal University, Kunming, 650500, China.
- Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Kunming, 650500, China.
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Yip LX, Wang J, Xue Y, Xing K, Sevencan C, Ariga K, Leong DT. Cell-derived nanomaterials for biomedical applications. SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS 2024; 25:2315013. [PMID: 38476511 PMCID: PMC10930141 DOI: 10.1080/14686996.2024.2315013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 01/29/2024] [Indexed: 03/14/2024]
Abstract
The ever-growing use of nature-derived materials creates exciting opportunities for novel development in various therapeutic biomedical applications. Living cells, serving as the foundation of nanoarchitectonics, exhibit remarkable capabilities that enable the development of bioinspired and biomimetic systems, which will be explored in this review. To understand the foundation of this development, we first revisited the anatomy of cells to explore the characteristics of the building blocks of life that is relevant. Interestingly, animal cells have amazing capabilities due to the inherent functionalities in each specialized cell type. Notably, the versatility of cell membranes allows red blood cells and neutrophils' membranes to cloak inorganic nanoparticles that would naturally be eliminated by the immune system. This underscores how cell membranes facilitate interactions with the surroundings through recognition, targeting, signalling, exchange, and cargo attachment. The functionality of cell membrane-coated nanoparticles can be tailored and improved by strategically engineering the membrane, selecting from a variety of cell membranes with known distinct inherent properties. On the other hand, plant cells exhibit remarkable capabilities for synthesizing various nanoparticles. They play a role in the synthesis of metal, carbon-based, and polymer nanoparticles, used for applications such as antimicrobials or antioxidants. One of the versatile components in plant cells is found in the photosynthetic system, particularly the thylakoid, and the pigment chlorophyll. While there are challenges in consistently synthesizing these remarkable nanoparticles derived from nature, this exploration begins to unveil the endless possibilities in nanoarchitectonics research.
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Affiliation(s)
- Li Xian Yip
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Jinping Wang
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
- School of Biological Science and Technology, University of Jinan, Jinan, China
| | - Yuling Xue
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Kuoran Xing
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
- NUS Graduate School for Integrative Sciences & Engineering Programme, National University of Singapore, Singapore
| | - Cansu Sevencan
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Katsuhiko Ariga
- International Center for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), Tsukuba, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Science, The University of Tokyo, Kashiwa, Chiba, Japan
| | - David Tai Leong
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
- NUS Graduate School for Integrative Sciences & Engineering Programme, National University of Singapore, Singapore
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Taylor SH. Phenotyping photosynthesis: yes we can. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:659-662. [PMID: 38307516 PMCID: PMC10837009 DOI: 10.1093/jxb/erad496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2024]
Abstract
This article comments on:
Keller B, Soto J, Steier A, Portilla-Benavides AE, Raatz B, Studer B, Walter A, Muller O, Urban MO. 2024. Linking photosynthesis and yield reveals a strategy to improve light use efficiency in a climbing bean breeding population. Journal of Experimental Botany 75, 901–916.
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Affiliation(s)
- Samuel H Taylor
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
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39
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Gao T, Liu X, Xu S, Yu X, Zhang D, Tan K, Zhou Y, Jia X, Zhang Z, Ma F, Li C. Melatonin confers tolerance to nitrogen deficiency through regulating MdHY5 in apple plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:1115-1129. [PMID: 37966861 DOI: 10.1111/tpj.16542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 10/29/2023] [Indexed: 11/16/2023]
Abstract
Nitrogen (N) is an essential nutrient for crop growth and development, significantly influencing both yield and quality. Melatonin (MT), a known enhancer of abiotic stress tolerance, has been extensively studied. However, its relationship with nutrient stress, particularly N deficiency, and the underlying regulatory mechanisms of MT on N absorption remain unclear. In this study, exogenous MT treatment was found to improve the tolerance of apple plants to N deficiency. Apple plants overexpressing the MT biosynthetic gene N-acetylserotonin methyltransferase 9 (MdASMT9) were used to further investigate the effects of endogenous MT on low-N stress. Overexpression of MdASMT9 improved the light harvesting and heat transfer capability of apple plants, thereby mitigating the detrimental effects of N deficiency on the photosynthetic system. Proteomic and physiological data analyses indicated that MdASMT9 overexpression enhanced the trichloroacetic acid cycle and positively modulated amino acid metabolism to counteract N-deficiency stress. Additionally, both exogenous and endogenous MT promoted the transcription of MdHY5, which in turn bound to the MdNRT2.1 and MdNRT2.4 promoters and activated their expression. Notably, MT-mediated promotion of MdNRT2.1 and MdNRT2.4 expression through regulating MdHY5, ultimately enhancing N absorption. Taken together, these findings shed light on the association between MdASMT9-mediated MT biosynthesis and N absorption in apple plants under N-deficiency conditions.
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Affiliation(s)
- Tengteng Gao
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Xiaomin Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Shuo Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Xi Yu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Danni Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Kexin Tan
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Yi Zhou
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Xumei Jia
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Zhijun Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Fengwang Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Chao Li
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
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Songserm R, Nishiyama Y, Sanevas N. Light Influences the Growth, Pigment Synthesis, Photosynthesis Capacity, and Antioxidant Activities in Scenedesmus falcatus. SCIENTIFICA 2024; 2024:1898624. [PMID: 38293704 PMCID: PMC10827371 DOI: 10.1155/2024/1898624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 12/29/2023] [Accepted: 01/09/2024] [Indexed: 02/01/2024]
Abstract
Light plays a significant role in microalgae cultivation, significantly influencing critical parameters, including biomass production, pigment content, and the accumulation of metabolic compounds. This study was intricately designed to optimize light intensities, explicitly targeting enhancing growth, pigmentation, and antioxidative properties in the green microalga, Scenedesmus falcatus (KU.B1). Additionally, the study delved into the photosynthetic efficiency in light responses of S. falcatus. The cultivation of S. falcatus was conducted in TRIS-acetate-phosphate medium (TAP medium) under different light intensities of 100, 500, and 1000 μmol photons m-2·s-1 within a photoperiodic cycle of 12 h of light and 12 h of dark. Results indicated a gradual increase in the growth of S. falcatus under high light conditions at 1000 μmol photons m-2·s-1, reaching a maximum optical density of 1.33 ± 0.03 and a total chlorophyll content of 22.67 ± 0.2 μg/ml at 120 h. Conversely, a slower growth rate was observed under low light at 100 μmol photons m-2·s-1. However, noteworthy reductions in the maximum quantum yield (Fv/Fm) and actual quantum yield (Y(II)) were observed under 1000 μmol photons m-2·s-1, reflecting a decline in algal photosynthetic efficiency. Interestingly, these changes under 1000 μmol photons m-2·s-1 were concurrent with a significant accumulation of a high amount of beta-carotene (919.83 ± 26.33 mg/g sample), lutein (34.56 ± 0.19 mg/g sample), and canthaxanthin (24.00 ± 0.38 mg/g sample) within algal cells. Nevertheless, it was noted that antioxidant activities and levels of total phenolic compounds (TPCs) decreased under high light at 1000 μmol photons m-2·s-1, with IC50 of DPPH assay recorded at 218.00 ± 4.24 and TPC at 230.83 ± 86.75 mg of GAE/g. The findings suggested that the elevated light intensity at 1000 μmol photons m-2·s-1 enhanced the growth and facilitated the accumulation of valuable carotenoid pigment in S. falcatus, presenting potential applications in the functional food and carotenoid industry.
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Affiliation(s)
- Rattanaporn Songserm
- Department of Botany, Faculty of Science, Kasetsart University, Bangkean, Bangkok 10900, Thailand
| | - Yoshitaka Nishiyama
- Department of Biochemistry and Molecular Biology, Graduate School of Science and Engineering, Saitama University, Shimo-Okubo 255, Sakura-ku, Saitama 338-8570, Japan
| | - Nuttha Sanevas
- Department of Botany, Faculty of Science, Kasetsart University, Bangkean, Bangkok 10900, Thailand
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41
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Jurado-Ruiz F, Nguyen TP, Peller J, Aranzana MJ, Polder G, Aarts MGM. LeTra: a leaf tracking workflow based on convolutional neural networks and intersection over union. PLANT METHODS 2024; 20:11. [PMID: 38233879 PMCID: PMC10795293 DOI: 10.1186/s13007-024-01138-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 01/08/2024] [Indexed: 01/19/2024]
Abstract
BACKGROUND The study of plant photosynthesis is essential for productivity and yield. Thanks to the development of high-throughput phenotyping (HTP) facilities, based on chlorophyll fluorescence imaging, photosynthetic traits can be measured in a reliable, reproducible and efficient manner. In most state-of-the-art HTP platforms, these traits are automatedly analyzed at individual plant level, but information at leaf level is often restricted by the use of manual annotation. Automated leaf tracking over time is therefore highly desired. Methods for tracking individual leaves are still uncommon, convoluted, or require large datasets. Hence, applications and libraries with different techniques are required. New phenotyping platforms are initiated now more frequently than ever; however, the application of advanced computer vision techniques, such as convolutional neural networks, is still growing at a slow pace. Here, we provide a method for leaf segmentation and tracking through the fine-tuning of Mask R-CNN and intersection over union as a solution for leaf tracking on top-down images of plants. We also provide datasets and code for training and testing on both detection and tracking of individual leaves, aiming to stimulate the community to expand the current methodologies on this topic. RESULTS We tested the results for detection and segmentation on 523 Arabidopsis thaliana leaves at three different stages of development from which we obtained a mean F-score of 0.956 on detection and 0.844 on segmentation overlap through the intersection over union (IoU). On the tracking side, we tested nine different plants with 191 leaves. A total of 161 leaves were tracked without issues, accounting to a total of 84.29% correct tracking, and a Higher Order Tracking Accuracy (HOTA) of 0.846. In our case study, leaf age and leaf order influenced photosynthetic capacity and photosynthetic response to light treatments. Leaf-dependent photosynthesis varies according to the genetic background. CONCLUSION The method provided is robust for leaf tracking on top-down images. Although one of the strong components of the method is the low requirement in training data to achieve a good base result (based on fine-tuning), most of the tracking issues found could be solved by expanding the training dataset for the Mask R-CNN model.
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Affiliation(s)
- Federico Jurado-Ruiz
- Center for Research in Agricultural Genomics (CRAG), Cerdanyola, 08193, Barcelona, Spain
| | - Thu-Phuong Nguyen
- Laboratory of Genetics, Wageningen University and Research (WUR), Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - Joseph Peller
- Greenhouse Horticulture, Wageningen University and Research (WUR), Wageningen, The Netherlands
| | - María José Aranzana
- Center for Research in Agricultural Genomics (CRAG), Cerdanyola, 08193, Barcelona, Spain
- Institut de Recerca i Tecnologia Agroalimentàries (IRTA), Barcelona, Spain
| | - Gerrit Polder
- Greenhouse Horticulture, Wageningen University and Research (WUR), Wageningen, The Netherlands
| | - Mark G M Aarts
- Laboratory of Genetics, Wageningen University and Research (WUR), Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands.
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Ajigboye OO, Ray RV, Murchie EH. Chlorophyll Fluorescence on the Fast Timescale. Methods Mol Biol 2024; 2790:257-267. [PMID: 38649575 DOI: 10.1007/978-1-0716-3790-6_13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Chlorophyll fluorescence is a rapid and noninvasive tool used for probing the activity of photosynthesis that can be used in vivo and in the field. It is highly relevant to the demands of high-throughput crop phenotyping and can be automated or manually applied. In this chapter, we describe protocols and advice for making fast timescale fluorescence measurements using handheld equipment in the laboratory or in the field in the context of phenotyping. While interpretation of some measured parameters requires caution for the purpose of identifying underlying mechanisms, we demonstrate this technique is appropriate for some applications where convenience, rapidity, and sensitivity are required.
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Affiliation(s)
- Olubukola O Ajigboye
- Division of Plant and Crop Sciences, School of Biosciences, The University of Nottingham, Loughborough, Leicestershire, UK
| | - Rumiana V Ray
- Division of Plant and Crop Sciences, School of Biosciences, The University of Nottingham, Loughborough, Leicestershire, UK
| | - Erik H Murchie
- Division of Plant and Crop Sciences, School of Biosciences, The University of Nottingham, Loughborough, Leicestershire, UK.
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Gelsomino A, Petrovičovà B, Panuccio MR. Exhausted fire-extinguishing powders: A potential source of mineral nutrients for reuse and valorisation in compost enrichment for soilless cultivation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167633. [PMID: 37806572 DOI: 10.1016/j.scitotenv.2023.167633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 09/20/2023] [Accepted: 10/05/2023] [Indexed: 10/10/2023]
Abstract
Fire-extinguishing powders (FEPs) are constituted by an inner mineral core of (NH4)H2PO4 and (NH4)2SO4 salts (>95 %, by weight) externally coated with Si-based additives, which make problematic reuse after their service life has expired (36 months). This study aimed to assess the feasibility of using the composting process as an environmentally friendly strategy to lyse the external coating and recycle this nutrient-rich solid waste for replacement of inorganic fertilization in soilless cultivation of horticultural crops. A microcosm-scale experiment with lettuce plants grown into a soil/quartz sand mixture under controlled conditions for 28 days was used to investigate plant responses (fresh and dry biomass, chlorophyll fluorescence parameters, root morphology, ash and nutrients content) to amendment with increasing dosages (equivalent at 0, 10, 20 and 30 t ha-1) of an exhausted FEPs-enriched compost. Chemical properties (pH, EC, TOC, TN) and content of soluble nutrients (Na+, K+, Mg2+, Ca2+, NH4+, H2PO4-, SO42-, NO3-, Cl-) released into the growing substrate were also monitored. Non-amended microcosms and non-enriched compost treatments were taken as controls. Results showed, beside the expected rise of phosphate, sulphate and ammonium ions, exhausted FEPs contributed Ca2+, Mg2+ and Na+ content. Whereas compost determined a dose-dependent release of K+, which was particularly useful in maintaining the K/Na ratio in a range not harmful to plant physiology. It was also found that the compost enriched with 5 % (w/w) exhausted FEPs was no phytotoxic to lettuce. On the contrary, it stimulated the plant growth, increased the photosynthetic efficiency and the shoot biomass accumulation, thus incrementing the shoot/root ratio. Moreover, it oriented the root morphology development and promoted the plant uptake of both water and solutes. To sum up, composting represents a suitable alternative to chemical treatment to recover readily available nutrients contained in exhausted FEPs and produce an enriched compost for use in soilless cultivation.
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Affiliation(s)
- Antonio Gelsomino
- Department of Agricultural Sciences, Mediterranean University of Reggio Calabria, Feo di Vito, 89124 Reggio Calabria, Italy.
| | - Beatrix Petrovičovà
- Department of Agricultural Sciences, Mediterranean University of Reggio Calabria, Feo di Vito, 89124 Reggio Calabria, Italy
| | - Maria Rosaria Panuccio
- Department of Agricultural Sciences, Mediterranean University of Reggio Calabria, Feo di Vito, 89124 Reggio Calabria, Italy
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Dasgupta A, Urquidi Camacho RA, Enganti R, Cho SK, Tucker LL, Torreverde JS, Abraham PE, von Arnim AG. A phosphorylation-deficient ribosomal protein eS6 is largely functional in Arabidopsis thaliana, rescuing mutant defects from global translation and gene expression to photosynthesis and growth. PLANT DIRECT 2024; 8:e566. [PMID: 38250458 PMCID: PMC10799217 DOI: 10.1002/pld3.566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 11/04/2023] [Accepted: 12/20/2023] [Indexed: 01/23/2024]
Abstract
The eukaryote-specific ribosomal protein of the small subunit eS6 is phosphorylated through the target of rapamycin (TOR) kinase pathway. Although this phosphorylation event responds dynamically to environmental conditions and has been studied for over 50 years, its biochemical and physiological significance remains controversial and poorly understood. Here, we report data from Arabidopsis thaliana, which indicate that plants expressing only a phospho-deficient isoform of eS6 grow essentially normally under laboratory conditions. The eS6z (RPS6A) paralog of eS6 functionally rescued a double mutant in both rps6a and rps6b genes when expressed at approximately twice the wild-type dosage. A mutant isoform of eS6z lacking the major six phosphorylatable serine and threonine residues in its carboxyl-terminal tail also rescued the lethality, rosette growth, and polyribosome loading of the double mutant. This isoform also complemented many mutant phenotypes of rps6 that were newly characterized here, including photosynthetic efficiency, and most of the gene expression defects that were measured by transcriptomics and proteomics. However, compared with plants rescued with a phospho-enabled version of eS6z, the phospho-deficient seedlings retained a mild pointed-leaf phenotype, root growth was reduced, and certain cell cycle-related mRNAs and ribosome biogenesis proteins were misexpressed. The residual defects of the phospho-deficient seedlings could be understood as an incomplete rescue of the rps6 mutant defects. There was little or no evidence for gain-of-function defects. As previously published, the phospho-deficient eS6z also rescued the rps6a and rps6b single mutants; however, phosphorylation of the eS6y (RPS6B) paralog remained lower than predicted, further underscoring that plants can tolerate phospho-deficiency of eS6 well. Our data also yield new insights into how plants cope with mutations in essential, duplicated ribosomal protein isoforms.
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Affiliation(s)
- Anwesha Dasgupta
- Department of Biochemistry & Cellular and Molecular BiologyThe University of TennesseeKnoxvilleTennesseeUSA
| | | | - Ramya Enganti
- Department of Biochemistry & Cellular and Molecular BiologyThe University of TennesseeKnoxvilleTennesseeUSA
| | - Sung Ki Cho
- Department of Biochemistry & Cellular and Molecular BiologyThe University of TennesseeKnoxvilleTennesseeUSA
| | - Lindsey L. Tucker
- Department of Biochemistry & Cellular and Molecular BiologyThe University of TennesseeKnoxvilleTennesseeUSA
| | - John S. Torreverde
- Department of Biochemistry & Cellular and Molecular BiologyThe University of TennesseeKnoxvilleTennesseeUSA
| | - Paul E. Abraham
- Graduate School of Genome Science and TechnologyThe University of TennesseeKnoxvilleTennesseeUSA
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
| | - Albrecht G. von Arnim
- Department of Biochemistry & Cellular and Molecular BiologyThe University of TennesseeKnoxvilleTennesseeUSA
- Graduate School of Genome Science and TechnologyThe University of TennesseeKnoxvilleTennesseeUSA
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Milliken AL, Fan M, Mathan J, Davey P, Lawson T. Measuring Nonfoliar Photosynthesis. Methods Mol Biol 2024; 2790:77-94. [PMID: 38649567 DOI: 10.1007/978-1-0716-3790-6_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Nonfoliar gas exchange provides a noninvasive way to measure photosynthesis and other gas exchange parameters, enabling the assessment of their potential contribution to yield. Photosynthesis in nonfoliar material has been gaining increasing attention due to its contribution to yield, especially under conditions when leaf photosynthesis is compromised. Here, we provide methods and approaches along with examples of measuring gas exchange in nonfoliar material using a specialized chamber.
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Affiliation(s)
| | - Mengjie Fan
- School of Life Sciences, University of Essex, Colchester, UK
| | | | - Phillip Davey
- School of Life Sciences, University of Essex, Colchester, UK
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, UK.
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46
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Lawson T, Vialet-Chabrand S. Imaging Spatial and Temporal Variation in Photosynthesis Using Chlorophyll Fluorescence. Methods Mol Biol 2024; 2790:293-316. [PMID: 38649577 DOI: 10.1007/978-1-0716-3790-6_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Chlorophyll fluorescence imaging provides a noninvasive rapid screen to assess the physiological status of a number of leaves or plants simultaneously. Although there are no standard protocols for chlorophyll fluorescence imaging, here we provide an example of routines for some of the typical measurements.
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Affiliation(s)
- Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, UK.
| | - Silvere Vialet-Chabrand
- Horticulture and Product Physiology, Department of Plant Sciences, Wageningen University & Research, Wageningen, The Netherlands
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47
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Walker BJ, Driever SM, Kromdijk J, Lawson T, Busch FA. Tools for Measuring Photosynthesis at Different Scales. Methods Mol Biol 2024; 2790:1-26. [PMID: 38649563 DOI: 10.1007/978-1-0716-3790-6_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Measurements of in vivo photosynthesis are powerful tools that probe the largest fluxes of carbon and energy in an illuminated leaf, but often the specific techniques used are so varied and specialized that it is difficult for researchers outside the field to select and perform the most useful assays for their research questions. The goal of this chapter is to provide a broad overview of the current tools available for the study of photosynthesis, both in vivo and in vitro, so as to provide a foundation for selecting appropriate techniques, many of which are presented in detail in subsequent chapters. This chapter will also organize current methods into a comparative framework and provide examples of how they have been applied to research questions of broad agronomical, ecological, or biological importance. This chapter closes with an argument that the future of in vivo measurements of photosynthesis lies in the ability to use multiple methods simultaneously and discusses the benefits of this approach to currently open physiological questions. This chapter, combined with the relevant methods chapters, could serve as a laboratory course in methods in photosynthesis research or as part of a more comprehensive laboratory course in general plant physiology methods.
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Affiliation(s)
- Berkley J Walker
- Plant Research Laboratory, Michigan State University, East Lansing, MI, USA
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Steven M Driever
- Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen, The Netherlands
| | - Johannes Kromdijk
- Department of Plant Sciences, University of Cambridge, Cambridge, UK
- Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, IL, USA
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, UK
| | - Florian A Busch
- School of Biosciences and The Birmingham Institute of Forest Research, University of Birmingham, Birmingham, UK.
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48
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Vaghar M, Eshghizadeh HR, Ehsanzadeh P. Elevated atmospheric CO 2 concentration mitigates salt damages to safflower: Evidence from physiological and biochemical examinations. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 206:108242. [PMID: 38070243 DOI: 10.1016/j.plaphy.2023.108242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 10/05/2023] [Accepted: 11/26/2023] [Indexed: 02/15/2024]
Abstract
The physiological and biochemical responses of salt-stressed safflower to elevated CO2 remain inadequately known. This study investigated the interactive effects of high CO2 concentration (700 ± 50 vs. 400 ± 50 μmol mol-1) and salinity stress levels (0.4, 6, and 12 dS m-1, NaCl) on growth and physiological properties of four safflower (Carthamus tinctorius L.) genotypes, under open chamber conditions. Results showed that the effects of CO2 on biomass of shoot and grains depend on salt stress and plant genotype. Elevated CO2 conditions increased shoot dry weight under moderate salinity stress and decreased it under severe stress. The increased CO2 concentration also increased the safflower genotypes' relative water content and their K+/Na + concentrations. Also enriched CO2 increased total carotenoid levels in safflower genotypes and improved membrane stability index by reducing H2O2 levels. In addition, increased CO2 level led to an increase in seed oil content, under both saline and non-saline conditions. This effect was particularly pronounced under severe saline conditions. Under conditions of high CO2 and salinity, the Koseh genotype exhibited higher grain weight and seed oil content than other genotypes. This advantage is due to the higher relative water content, maximum quantum efficiency of photosystem II (Fv/Fm), and K+/Na+, as well as the lower Na+ and H2O2 concentrations. Results indicate that the high CO2 level mitigated the destructive effect of salinity on safflower growth by reducing Na + uptake and increasing the Fv/Fm, total soluble carbohydrates, and membrane stability index. This finding can be used in safflower breeding programs to develop cultivars that can thrive in arid regions with changing climatic conditions.
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Affiliation(s)
- M Vaghar
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, Iran.
| | - H R Eshghizadeh
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, Iran.
| | - P Ehsanzadeh
- Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Isfahan, 84156-83111, Iran.
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49
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Bengoa Luoni SA, Garassino F, Aarts MGM. A High-Throughput Approach for Photosynthesis Studies in a Brassicaceae Panel. Methods Mol Biol 2024; 2787:39-53. [PMID: 38656480 DOI: 10.1007/978-1-0716-3778-4_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
The study of natural variations in photosynthesis in the Brassicaceae family offers the possibility of identifying mechanisms to enhance photosynthetic efficiency in crop plants. Indeed, this family, and particularly its tribe Brassiceae, has been shown to harbor species that have a higher-than-expected photosynthetic efficiency, possibly as a result of a complex evolutionary history. Over the past two decades, methods have been developed to measure photosynthetic efficiency based on chlorophyll fluorescence. Chlorophyll fluorescence measurements are performed with special cameras, such as the FluorCams, which can be included in robotic systems to create high-throughput phenotyping platforms. While these platforms have so far demonstrated high efficiency in measuring small model species like Arabidopsis thaliana, they have the drawback of limited adaptability to accommodate different plant sizes. As a result, the range of species that can be analyzed is restricted. This chapter presents our approach to analyze the photosynthetic parameters: ϕPSII and Fv/Fm for a panel of Brassicaceae species, including a high-photosynthesis species, Hirschfeldia incana, and the adaptations to the phenotyping platform that are required to accommodate this varied group of plants.
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Affiliation(s)
- Sofia A Bengoa Luoni
- Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands.
| | - Francesco Garassino
- Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands
| | - Mark G M Aarts
- Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands
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50
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Stefanatou A, Lagkadas M, Petousi I, Schiza S, Stasinakis AS, Fyllas N, Fountoulakis MS. Vertical flow constructed wetlands as green facades and gardens for on-site greywater treatment in buildings: Two-year mesocosm study on removal performance. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167362. [PMID: 37769734 DOI: 10.1016/j.scitotenv.2023.167362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2023] [Revised: 09/21/2023] [Accepted: 09/24/2023] [Indexed: 10/03/2023]
Abstract
This study focuses on the performance and clogging of vertical flow constructed wetlands (VFCWs) planted with climbing ornamentals and ornamental plants for greywater treatment, after two years of operation at mesocosm level. Different substrate (sand, vermiculite) and vegetation (Trachelospermum jasminoides, Lonicera japonica, Callistemon laevis) types were evaluated to determine the optimal removal of pollutants. Results revealed that, during the second year of operation, removal efficiencies of turbidity and COD were significantly higher (1st year: 54-94 %; 71-89 %, 2nd year: 82-98 %; 86-95 %, respectively) for both studied planted substrates, compared to the first year. Moreover, it was found that sand systems from each studied plant as well as from the unplanted systems, were more effective compared to vermiculite for most of the studied parameters (turbidity, TSS, COD, anionic surfactants, pathogens). Sand systems were also quite effective in removing total coliforms (5 log reduction) and Escherichia coli (4 log reduction). At the end of the two-year experiment, all planted systems with sand had significantly higher hydraulic conductivity than the unplanted ones. With reference to evapotranspiration, even though planted systems had significantly higher losses, C. laevis systems demonstrated less water losses than the other vegetated systems. According to the findings, the studied plants managed to continue growing without facing added stress. Therefore, the application of climbing and ornamental plants in VFCWs for greywater treatment in buildings seems a promising option for developing green infrastructures in urban areas and enhancing the removal efficiency of such systems.
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Affiliation(s)
- Aimilia Stefanatou
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece.
| | - Michail Lagkadas
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
| | - Ioanna Petousi
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
| | - Spyridoula Schiza
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
| | | | - Nikolaos Fyllas
- Department of Environment, University of the Aegean, 81100 Mytilene, Greece
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