Will elevated carbon dioxide concentration amplify the benefits of nitrogen fixation in legumes?

Warming increased the promotion of atmospheric CO2 concentration on biological nitrogen fixation by changing the nifH gene community

Understanding the nitrogen (N) fixation process in rice paddies under anticipated climate change is vital for regulating the soil N cycle, solving N pollution, and improving agricultural productivity in the agricultural system. To clarify the changes in nitrogen fixation under elevated carbon dioxide (CO2) concentration and temperature in rice paddies, we constructed an automated platform consisting of Open-Top Chamber. We set up four treatments: CK (ambient CO2 concentration + ambient temperature), EC (increase in CO2 concentration by 200 μmol mol-1 + ambient temperature), ET (ambient CO2 concentration + increase in temperature by 2 °C), and ECT (increase in CO2 concentration by 200 μmol mol-1 + increase in temperature by 2 °C), to analyze nitrogen fixation potential (NFP) and the abundance, diversity, and composition of the nifH gene of nitrogen-fixing bacteria communities in paddy soils. The results showed that EC, ET, and ECT increased NFP and the abundance of nifH gene in paddy soils to different degrees. ET significantly increased NFP in the paddy soils at the tillering, elongation, and flowering stages. ECT significantly increased nifH gene abundance at the tillering, elongation, and maturity stages compared to CK. EC, ET, and ECT affected the community structures of nitrogen-fixing microorganisms to a certain extent, especially at maturity, where the community structure of EC, ET, and ECT treatments changed considerably. NFP increased with increasing nifH gene abundance and soil NH4+-N content and decreased with increasing soil pH and DOC content. In summary, ET promotes nitrogen cycling in paddy soils by directly promoting soil MBN and NH4+-N content, increasing soil temperature, and suppressing soil DOC content and pH, thus indirectly influencing the community structures and nifH gene abundance in paddy soils, which further contributes to the positive effect of EC on biological nitrogen fixation in rice fields.

Plant Nitrogen Assimilation: A Climate Change Perspective

Of all the essential macronutrients necessary for plant growth and development, nitrogen is required in the greatest amounts. Nitrogen is a key component of important biomolecules like proteins and has high nutritive importance for humans and other animals. Climate change factors, such as increasing levels of carbon dioxide, increasing temperatures, and increasing watering regime, directly or indirectly influence plant nitrogen uptake and assimilation dynamics. The impacts of these stressors can directly threaten our primary source of nitrogen as obtained from the soil by plants. In this review, we discuss how climate change factors can influence nitrogen uptake and assimilation in cultivated plants. We examine the effects of these factors alone and in combination with species of both C3 and C4 plants. Elevated carbon dioxide, e[CO2], causes the dilution of nitrogen in tissues of non-leguminous C3 and C4 plants but can increase nitrogen in legumes. The impact of high-temperature (HT) stress varies depending on whether a species is leguminous or not. Water stress (WS) tends to result in a decrease in nitrogen assimilation. Under some, though not all, conditions, e[CO2] can have a buffering effect against the detrimental impacts of other climate change stressors, having an ameliorating effect on the adverse impacts of HT or WS. Together, HT and WS are seen to cause significant reductions in biomass production and nitrogen uptake in non-leguminous C3 and C4 crops. With a steadily rising population and rapidly changing climate, consideration must be given to the morphological and physiological effects that climate change will have on future crop health and nutritional quality of N.

A Comprehensive Transcriptome Atlas Reveals the Crucial Role of LncRNAs in Maintaining Nodulation Homeostasis in Soybean

Symbiotic nitrogen fixation (SNF) provides nitrogen for soybean. A primary challenge in enhancing yield through efficient SNF lies in striking a balance between its high energy consumption and plant growth. However, the systemic transcriptional reprogramming during nodulation remains limited. Here, this work conducts a comprehensive RNA-seq of the roots, cotyledons and leaves of inoculated-soybean. This work finds 88,814 mRNAs and 6,156 noncoding RNAs (ncRNAs) across various organs. Notably, this work identifies 6,679 nodulation-regulated mRNAs (NR-mRNAs), 1,681 long noncoding RNAs (lncRNAs) (NR-lncRNAs), and 59 miRNAs (NR-miRNAs). The majority of these NR-RNAs are associated with plant-microbial interaction and exhibit high organ specificity. Roots display the highest abundance of NR-ncRNAs and the most dynamic crosstalk between NR-lncRNAs and NR-miRNAs in a GmNARK-dependent manner. This indicates that while each tissue responds uniquely, GmNARK serves as a primary regulator of the transcriptional control of nodulated-plants. Furthermore, this work proves that lnc-NNR6788 and lnc-NNR7059 promote nodulation by regulating their target genes. This work also shows that the nodulation- and GmNARK-regulated (NNR) lnc-NNR4481 negatively regulates nodulation through miR172c within a competing endogenous RNA (ceRNA) network. The spatial organ-type transcriptomic atlas establishes a benchmark and provides a valuable resource for integrative analyses of the mechanism underlying of nodulation and plant growth balance.

Does the response of Rubisco and photosynthesis to elevated [CO2] change with unfavourable environmental conditions?

Climate change due to anthropogenic CO2 emissions affects plant performance globally. To improve crop resilience, we need to understand the effects of elevated CO2 concentration (e[CO2]) on CO2 assimilation and Rubisco biochemistry. However, the interactive effects of e[CO2] and abiotic stress are especially unclear. This study examined the CO2 effect on photosynthetic capacity under different water availability and temperature conditions in 42 different crop species, varying in functional group, photosynthetic pathway, and phenological stage. We analysed close to 3000 data points extracted from 120 published papers. For C3 species, e[CO2] increased net photosynthesis and intercellular [CO2], while reducing stomatal conductance and transpiration. Maximum carboxylation rate and Rubisco in vitro extractable maximal activity and content also decreased with e[CO2] in C3 species, while C4 crops are less responsive to e[CO2]. The interaction with drought and/or heat stress did not significantly alter these photosynthetic responses, indicating that the photosynthetic capacity of stressed plants responded to e[CO2]. Moreover, e[CO2] had a strong effect on the photosynthetic capacity of grasses mainly in the final stages of development. This study provides insight into the intricate interactions within the plant photosynthetic apparatus under the influence of climate change, enhancing the understanding of mechanisms governing plant responses to environmental parameters.

Biomass and nitrogen fixation dataset of Pisum sativum L. and Vicia faba L. cultivated under elevated CO2 and nitrogen addition

It is expected that CO2 concentration will increase in the air, thereby stimulating the photosynthesis process and, hence, plant biomass production. In the case of legumes, increased biomass due to higher CO2 concentration can stimulate atmospheric nitrogen (N2) fixation in the nodules. However, N2 fixation is inhibited by external N supply. Thus, biomass production and N2 fixation were analysed in two legumes (Pisum sativum L. and Vicia faba L.) grown at two levels of CO2 and three N levels. P. sativum reduces fixation with high soil N (facultative), while V. faba maintains high fixation regardless of soil N levels (obligate). The N2 fixation and plant and nodule biomass of the two species were evaluated in a pot experiment under controlled conditions using growth chambers with artificial CO2 supply and N addition. The proportion of N derived from the air (%Ndfa) present in the plants' biomass was calculated from the natural abundance of 15N and the N concentration of plant tissues using nonlegumes reference plants. Additionally, N content data are presented for both species growing at two levels of air CO2. The data may be useful for plant physiologists, especially those working on biological N2 fixation with non-model legumes at elevated CO2.

Elevated CO2 concentration enhance carbon and nitrogen metabolism and biomass accumulation of Ormosiahosiei

Elevated CO2 concentrations may inhibit photosynthesis due to nitrogen deficiency, but legumes may be able to overcome this limitation and continue to grow. Our study confirms this conjecture well. First, we placed the two-year-old potted saplings of Ormosia hosiei (O. hosiei) (a leguminous tree species) in the open-top chamber (OTC) with three CO2 concentrations of 400 (CK), 600 (E1), and 800 μmol·mol-1 (E2) to simulate the elevated CO2 concentration environment. After 146 days, the light saturation point (LSP), light compensation point (LCP), apparent quantum efficiency (AQE), and dark respiration rate (Rd) of O. hosiei were increased under increasing CO2 concentration and obtain the maximum ribulose diphosphate (RuBP) carboxylation rate (Vc max) and RuBP regenerated photosynthetic electron transfer rate (Jmax) were also significantly increased under E2 treatment (P < 0.05). This results in a significant increase of the maximum assimilation rate (Amax) under elevated CO2 concentrations. Sucrose phosphate synthase (SPS) activity in sucrose metabolism increased in the leaves, more soluble sugars, starches, and sucrose was produced, but sucrose content only in leaves increased at E2, and more carbon flows to the roots. The activity of the NH4+ assimilating enzymes glutamine synthetase (GS), glutamate synthetase (GOGAT), and glutamate dehydrogenase (GDH) in the leaves of O. hosiei increases under elevated CO2 concentrations to promote nitrogen synthesis that reduces the content of ammonium nitrogen and increases the content of nitrate nitrogen. In addition, under E1 conditions, sucrose synthase (SS), direction of synthesis activity was highest and sucrose invertase (INV) activity was lowest, this means that the balance of C and N metabolism is maintained. While under E2 conditions SS activity decreased and INV activity increased, this increased C/N and nitrogen use efficiency. So, the elevated CO2 concentration promotes the accumulation of O. hosiei biomass, especially in the aboveground part, but did not have a significant effect on the accumulation of root biomass. This means that O. hosiei is able to cope under the elevated CO2 concentration without showing photosynthetic adaptation during the experimental period.

Elevated atmospheric CO2 has small, species-specific effects on pollen chemistry and plant growth across flowering plant species

Elevated atmospheric carbon dioxide (eCO2) can affect plant growth and physiology, which can, in turn, impact herbivorous insects, including by altering pollen or plant tissue nutrition. Previous research suggests that eCO2 can reduce pollen nutrition in some species, but it is unknown whether this effect is consistent across flowering plant species. We experimentally quantified the effects of eCO2 across multiple flowering plant species on plant growth in 9 species and pollen chemistry (%N an estimate for protein content and nutrition in 12 species; secondary chemistry in 5 species) in greenhouses. For pollen nutrition, only buckwheat significantly responded to eCO2, with %N increasing in eCO2; CO2 treatment did not affect pollen amino acid composition but altered secondary metabolites in buckwheat and sunflower. Plant growth under eCO2 exhibited two trends across species: plant height was taller in 44% of species and flower number was affected for 63% of species (3 species with fewer and 2 species with more flowers). The remaining growth metrics (leaf number, above-ground biomass, flower size, and flowering initiation) showed divergent, species-specific responses, if any. Our results indicate that future eCO2 is unlikely to uniformly change pollen chemistry or plant growth across flowering species but may have the potential to alter ecological interactions, or have particularly important effects on specialized pollinators.

Biological nitrogen fixation maintains carbon/nitrogen balance and photosynthesis at elevated CO2

Understanding crop responses to elevated CO2 is necessary to meet increasing agricultural demands. Crops may not achieve maximum potential yields at high CO2 due to photosynthetic downregulation, often associated with nitrogen limitation. Legumes have been proposed to have an advantage at elevated CO2 due to their ability to exchange carbon for nitrogen. Here, the effects of biological nitrogen fixation (BNF) on the physiological and gene expression responses to elevated CO2 were examined at multiple nitrogen levels by comparing alfalfa mutants incapable of nitrogen fixation to wild-type. Elemental analysis revealed a role for BNF in maintaining shoot carbon/nitrogen (C/N) balance under all nitrogen treatments at elevated CO2, whereas the effect of BNF on biomass was only observed at elevated CO2 and the lowest nitrogen dose. Lower photosynthetic rates at were associated with the imbalance in shoot C/N. Genome-wide transcriptional responses were used to identify carbon and nitrogen metabolism genes underlying the traits. Transcription factors important to C/N signalling were identified from inferred regulatory networks. This work supports the hypothesis that maintenance of C/N homoeostasis at elevated CO2 can be achieved in plants capable of BNF and revealed important regulators in the underlying networks including an alfalfa (Golden2-like) GLK ortholog.

Enigmatic evolution of microbial nitrogen fixation: insights from Earth's past

The evolution of nitrogen fixation undoubtedly altered nearly all corners of the biosphere, given the essential role of nitrogen in the synthesis of biomass. To date, there is no unified view on what planetary conditions gave rise to nitrogen fixation or how these conditions have sustained it evolutionarily. Intriguingly, the concentrations of metals that nitrogenases require to function have changed throughout Earth's history. In this review, we describe the interconnection of the metal and nitrogen cycles with nitrogenase evolution and the importance of ancient ecology in the formation of the modern nitrogen cycle. We argue that exploration of the nitrogen cycle's deep past will provide insights into humanity's immediate environmental challenges centered on nitrogen availability.

Flowering onset time is regulated by microRNA-mediated trehalose-6-phosphate signaling in Cajanus cajan L. under elevated CO2

CO2 levels are known to have an impact on plant development and physiology. In the current study, we have investigated the effect of elevated CO2 on flowering and its regulation through miRNA mediated sugar signaling. We also unraveled small RNA transcriptome of pigeonpea under ambient and elevated CO2 conditions and predicted the targets for crucial miRNAs through computational methods. The results have shown that the delayed flowering in pigeonpea under elevated CO2 was due to an imbalance in C:N stoichiometry and differential expression pattern of aging pathway genes, including SQUAMOSA PROMOTER BINDING PROTEIN-LIKE. Furthermore, qRT PCR analysis has revealed the role of miR156 and miR172 in mediating trehalose-6-phosphate dependent flowering regulation. The current study is crucial in understanding the responses of flowering patterns in a legume crop to elevated CO2 which showed a significant impact on its final yields. Also, these findings are crucial in devising effective crop improvement strategies for developing climate resilient crops, including pigeonpea.

Supplementary Information

The online version contains supplementary material available at 10.1007/s12298-024-01434-9.

Localized osmotic stress activates systemic responses to N limitation in Medicago truncatula-Sinorhizobium symbiotic plants

In mature symbiotic root nodules, differentiated rhizobia fix atmospheric dinitrogen and provide ammonium to fulfill the plant nitrogen (N) demand. The plant enables this process by providing photosynthates to the nodules. The symbiosis is adjusted to the whole plant N demand thanks to systemic N signaling controlling nodule development. Symbiotic plants under N deficit stimulate nodule expansion and activate nodule senescence under N satiety. Besides, nodules are highly sensitive to drought. Here, we used split-root systems to characterize the systemic responses of symbiotic plants to a localized osmotic stress. We showed that polyéthylène glycol (PEG) application rapidly inhibited the symbiotic dinitrogen fixation activity of nodules locally exposed to the treatment, resulting to the N limitation of the plant supplied exclusively by symbiotic dinitrogen fixation. The localized PEG treatment triggered systemic signaling stimulating nodule development in the distant untreated roots. This response was associated with an enhancement of the sucrose allocation. Our analyses showed that transcriptomic reprogramming associated with PEG and N deficit systemic signaling(s) shared many targets transcripts. Altogether, our study suggests that systemic N signaling is a component of the adaptation of the symbiotic plant to the local variations of its edaphic environment.

A genome-scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost-benefit of nitrogen fixation

Nitrogen-fixing symbioses allow legumes to thrive in nitrogen-poor soils at the cost of diverting some photoassimilate to their microsymbionts. Effort is being made to bioengineer nitrogen fixation into nonleguminous crops. This requires a quantitative understanding of its energetic costs and the links between metabolic variations and symbiotic efficiency. A whole-plant metabolic model for soybean (Glycine max) with its associated microsymbiont Bradyrhizobium diazoefficiens was developed and applied to predict the cost-benefit of nitrogen fixation with varying soil nitrogen availability. The model predicted a nitrogen-fixation cost of c. 4.13 g C g-1 N, which when implemented into a crop scale model, translated to a grain yield reduction of 27% compared with a non-nodulating plant receiving its nitrogen from the soil. Considering the lower nitrogen content of cereals, the yield cost to a hypothetical N-fixing cereal is predicted to be less than half that of soybean. Soybean growth was predicted to be c. 5% greater when the nodule nitrogen export products were amides versus ureides. This is the first metabolic reconstruction in a tropical crop species that simulates the entire plant and nodule metabolism. Going forward, this model will serve as a tool to investigate carbon use efficiency and key mechanisms within N-fixing symbiosis in a tropical species forming determinate nodules.

Elevated CO2 differentially attenuates beryllium-induced oxidative stress in oat and alfalfa

Elevated CO2 (eCO2 ) is one of the climate changes that may benefit plant growth under emerging soil contaminants such as heavy metals. In this regard, the morpho-physiological mechanisms underlying the mitigating impact of eCO2 on beryllium (Be) phytotoxicity are poorly known. Hence, we investigated eCO2 and Be interactive effects on the growth and metabolism of two species from different groups: cereal (oat) and legume (alfalfa). Be stress significantly reduced the growth and photosynthetic attributes in both species, but alfalfa was more susceptible to Be toxicity. Be stress induced reactive oxygen species (ROS) accumulation by increasing photorespiration, subsequently resulting in increased lipid and protein oxidation. However, the growth inhibition and oxidative stress induced by Be stress were mitigated by eCO2 . This could be explained, at least partially, by the increase in organic acids (e.g., citric acid) released into the soil, which subsequently reduced Be uptake. Additionally, eCO2 reduced cellular oxidative damage by reducing photorespiration, which was more significant in alfalfa plants. Furthermore, eCO2 improved the redox status and detoxification processes, including phytochelatins, total glutathione and metallothioneins levels, and glutathione-S-transferase activity in both species, but to a greater extend in alfalfa. In this context, eCO2 also stimulated anthocyanin biosynthesis by accumulating its precursors (phenylalanine, coumaric acid, cinnamic acid, and naringenin) and key biosynthetic enzymes (phenylalanine ammonia-lyase, cinnamate hydroxylase, and coumarate:CoA ligase) mainly in alfalfa plants. Overall, this study explored the mechanistic approach by which eCO2 alleviates the harmful effects of Be. Alfalfa was more sensitive to Be stress than oats; however, the alleviating impact of eCO2 on Be stress was more pronounced in alfalfa.

Responses in Nodulated Bean (Phaseolus vulgaris L.) Plants Grown at Elevated Atmospheric CO2

The increase in the concentration of CO₂ in the atmosphere is currently causing metabolomic and physiological changes in living beings and especially in plants. Future climate change may affect crop productivity by limiting the uptake of soil resources such as nitrogen (N) and water. The contribution of legume-rhizobia symbioses to N₂ fixation increases the available biological N reserve. Elevated CO₂ (eCO₂) has been shown to enhance the amount of fixed N₂ primarily by increasing biomass. Greater leaf biomass under eCO₂ levels increases N demand, which can stimulate and increase N₂ fixation. For this reason, bean plants (Phaseolus vulgaris L.) were used in this work to investigate how, in a CO₂-enriched atmosphere, inoculation with rhizobia (Rhizobium leguminosarum) affects different growth parameters and metabolites of carbon and nitrogen metabolism, as well as enzymatic activities of nitrogen metabolism and the oxidative state of the plant, with a view to future scenarios, where the concentration of CO₂ in the atmosphere will increase. The results showed that bean symbiosis with R. leguminosarum improved N₂ fixation, while also decreasing the plant's oxidative stress, and provided the plant with a greater defense system against eCO₂ conditions. In conclusion, the nodulation with rhizobia potentially replaced the chemical fertilization of bean plants (P. vulgaris L.), resulting in more environmentally friendly agricultural practices. However, further optimization of symbiotic activities is needed to improve the efficiency and to also develop strategies to improve the response of legume yields to eCO_2, particularly due to the climate change scenario in which there is predicted to be a large increase in the atmospheric CO₂ concentration.

Control of the rhizobium-legume symbiosis by the plant nitrogen demand is tightly integrated at the whole plant level and requires inter-organ systemic signaling

Symbiotic nodules formed on legume roots with rhizobia fix atmospheric N₂. Bacteria reduce N₂ to NH₄ ⁺ that is assimilated into amino acids by the plant. In return, the plant provides photosynthates to fuel the symbiotic nitrogen fixation. Symbiosis is tightly adjusted to the whole plant nutritional demand and to the plant photosynthetic capacities, but regulatory circuits behind this control remain poorly understood. The use of split-root systems combined with biochemical, physiological, metabolomic, transcriptomic, and genetic approaches revealed that multiple pathways are acting in parallel. Systemic signaling mechanisms of the plant N demand are required for the control of nodule organogenesis, mature nodule functioning, and nodule senescence. N-satiety/N-deficit systemic signaling correlates with rapid variations of the nodules' sugar levels, tuning symbiosis by C resources allocation. These mechanisms are responsible for the adjustment of plant symbiotic capacities to the mineral N resources. On the one hand, if mineral N can satisfy the plant N demand, nodule formation is inhibited, and nodule senescence is activated. On the other hand, local conditions (abiotic stresses) may impair symbiotic activity resulting in plant N limitation. In these conditions, systemic signaling may compensate the N deficit by stimulating symbiotic root N foraging. In the past decade, several molecular components of the systemic signaling pathways controlling nodule formation have been identified, but a major challenge remains, that is, to understand their specificity as compared to the mechanisms of non-symbiotic plants that control root development and how they contribute to the whole plant phenotypes. Less is known about the control of mature nodule development and functioning by N and C nutritional status of the plant, but a hypothetical model involving the sucrose allocation to the nodule as a systemic signaling process, the oxidative pentose phosphate pathway, and the redox status as potential effectors of this signaling is emerging. This work highlights the importance of organism integration in plant biology.

Spatiotemporal variability and key factors of evergreen forest encroachment in the southern Great Plains

Woody plant encroachment has been long observed in the southern Great Plains (SGP) of the United States. However, our understanding of its spatiotemporal variability, which is the basis for informed and targeted management strategy, is still poor. This study investigates the encroachment of evergreen forest, which is the most important encroachment component in the SGP. A validated evergreen forest map of the SGP (30 m resolution, for the time period 2015 to 2017) from our previous study was utilized (referred to as evergreen_base). Sample plots of evergreen forest (as of 2017) were collected across the study area, based on which a threshold of winter season (January and February) mean normalized difference vegetation index (NDVI_winter) was derived for each of the 5 sub-regions, using Landsat 7 surface reflectance data from 2015 to 2017. Then a NDVI_winter layer was created for each year within the four time periods of 1985-1989, 1995-1999, 2005-2009, and 2015-2017, with winter season surface reflectance data from Landsat 4, 5, and 7. By applying the sub-region specific NDVI_winter thresholds to the annual NDVI_winter layers and the evergreen_base, a SGP evergreen forest map was generated for each of those years. The annual evergreen forest maps within each time period were composited into one. According to the resulting four composite evergreen forest maps, mean annual encroachment rate (km²/year) was calculated at sub-region and ecoregion scales, over each of the three temporal stages 1990-1999, 2000-2009, and 2010-2017, respectively. To understand the spatiotemporal variability of the encroachment, the encroachment rate at each temporal stage was related to the corresponding initial evergreen forest area, mean annual precipitation (MAP), and mean annual burned area (MABA) through linear regression and pairwise comparison. Results suggest that most of the ecoregions have seen a slowing trend of evergreen forest encroachment since 1990. The temporal trend of encroachment rate tends to be consistent with that of MAP, but opposite to that of MABA. The spatial variability of the encroachment rate among ecoregions can be largely (>68%) explained by initial evergreen forest area but shows no significant relationship with MAP or MABA. These findings provide pertinent guidance for the combat of woody plant encroachment in the SGP under the context of climate change.

Are legumes different? Origins and consequences of evolving nitrogen fixing symbioses

Nitrogen fixing symbioses between plants and bacteria are ancient and, while not numerous, are formed in diverse lineages of plants ranging from microalgae to angiosperms. One symbiosis stands out as the most widespread one is that between legumes and rhizobia, leading to the formation of nitrogen-fixing nodules. The legume family is one of the largest and most diverse group of plants and legumes have been used by humans since the beginning of agriculture, both as high nitrogen food, as well as pastures and rotation crops. One open question is whether their ability to form a nitrogen-fixing symbiosis has contributed to legumes' success, and whether legumes have any unique characteristics that have made them more diverse and widespread than other groups of plants. This review examines the evolutionary journey that has led to the diversification of legumes, in particular its nitrogen-fixing symbiosis, and asks four questions to investigate which legume traits might have contributed to their success: 1. In what ways do legumes differ from other plant groups that have evolved nitrogen-fixing symbioses? In order to answer this question, the characteristics of the symbioses, and efficiencies of nitrogen fixation are compared between different groups of nitrogen fixing plants. 2. Could certain unique features of legumes be a reason for their success? This section examines the manifestations and possible benefits of a nitrogen-rich 'lifestyle' in legumes. 3. If nitrogen fixation was a reason for such a success, why have some species lost the symbiosis? Formation of symbioses has trade-offs, and while these are less well known for non-legumes, there are known energetic and ecological reasons for loss of symbiotic potential in legumes. 4. What can we learn from the unique traits of legumes for future crop improvements? While exploiting some of the physiological properties of legumes could be used to improve legume breeding, our increasing molecular understanding of the essential regulators of root nodule symbioses raise hope of creating new nitrogen fixing symbioses in other crop species.

The innovation of the symbiosome has enhanced the evolutionary stability of nitrogen fixation in legumes

Nitrogen-fixing symbiosis is globally important in ecosystem functioning and agriculture, yet the evolutionary history of nodulation remains the focus of considerable debate. Recent evidence suggesting a single origin of nodulation followed by massive parallel evolutionary losses raises questions about why a few lineages in the N2 -fixing clade retained nodulation and diversified as stable nodulators, while most did not. Within legumes, nodulation is restricted to the two most diverse subfamilies, Papilionoideae and Caesalpinioideae, which show stable retention of nodulation across their core clades. We characterize two nodule anatomy types across 128 species in 56 of the 152 genera of the legume subfamily Caesalpinioideae: fixation thread nodules (FTs), where nitrogen-fixing bacteroids are retained within the apoplast in modified infection threads, and symbiosomes, where rhizobia are symplastically internalized in the host cell cytoplasm within membrane-bound symbiosomes (SYMs). Using a robust phylogenomic tree based on 997 genes from 147 Caesalpinioideae genera, we show that losses of nodulation are more prevalent in lineages with FTs than those with SYMs. We propose that evolution of the symbiosome allows for a more intimate and enduring symbiosis through tighter compartmentalization of their rhizobial microsymbionts, resulting in greater evolutionary stability of nodulation across this species-rich pantropical legume clade.

Altering ureide transport in nodulated soybean results in whole-plant adjustments of metabolism, assimilate partitioning, and sink strength

Legumes develop a symbiotic relationship with bacteria that are housed in root nodules and fix atmospheric di-nitrogen (N2) to ammonia. In soybean (Glycine max (L.) Merr.) nodules, the final products of nitrogen (N) fixation are amino acids, and the ureides allantoin and allantoic acid that also serve as the major long-distance N transport forms. Recently, we have shown that increased expression of UPS1 (ureide permease 1) in soybean nodules results in enhanced ureide export from nodules with positive effects on N fixation and seed yield. Here, we demonstrate that changes in the ureide transport processes trigger alterations in allantoin and allantoic acid pools and partitioning throughout the transgenic plants. They further result in adjustments in amino acid availability in, and translocation to, root and shoot sinks. In addition, leaf carbon (C) capture, assimilation and allocation to sinks are improved, accommodating the increased nodule function, and root and shoot growth. Overall, we demonstrate that enhanced ureide partitioning in nodulated soybean leads to a complex rebalancing of N and C acquisition, metabolism, and transport processes with positive consequences for above- and below-ground vegetative biomass, and whole-plant N and C gains.

Growth and Nutritional Quality of Lemnaceae Viewed Comparatively in an Ecological and Evolutionary Context

This review focuses on recently characterized traits of the aquatic floating plant Lemna with an emphasis on its capacity to combine rapid growth with the accumulation of high levels of the essential human micronutrient zeaxanthin due to an unusual pigment composition not seen in other fast-growing plants. In addition, Lemna's response to elevated CO₂ was evaluated in the context of the source-sink balance between plant sugar production and consumption. These and other traits of Lemnaceae are compared with those of other floating aquatic plants as well as terrestrial plants adapted to different environments. It was concluded that the unique features of aquatic plants reflect adaptations to the freshwater environment, including rapid growth, high productivity, and exceptionally strong accumulation of high-quality vegetative storage protein and human antioxidant micronutrients. It was further concluded that the insensitivity of growth rate to environmental conditions and plant source-sink imbalance may allow duckweeds to take advantage of elevated atmospheric CO₂ levels via particularly strong stimulation of biomass production and only minor declines in the growth of new tissue. It is proposed that declines in nutritional quality under elevated CO₂ (due to regulatory adjustments in photosynthetic metabolism) may be mitigated by plant-microbe interaction, for which duckweeds have a high propensity.

Plant Functional Types Differ in Their Long-term Nutrient Response to eCO2 in an Extensive Grassland

Increasing atmospheric CO2 enhances plant biomass production and may thereby change nutrient concentrations in plant tissues. The objective of this study was to identify the effect of elevated atmospheric CO2 concentrations on nutrient concentrations of grassland biomass that have been grown for 16 years (1998–2013). The grassland biomass grown at the extensively managed Giessen FACE experiment, fumigated with ambient and elevated CO2 (aCO2; eCO2; +20%) was harvested twice annually. Concentrations of C, N, P, K, Ca, Mg, Mn, Fe, Cu and Zn were determined separately for grasses, forbs and legumes. Under eCO2, the concentration of N was reduced in grasses, Ca was reduced in grasses and forbs, P was reduced in grasses but increased in legumes, Mg concentration was reduced in grasses, forbs and legumes and K was reduced in grasses but increased in forbs. The nutrient yield (in g nutrient yield of an element per m−2) of most elements indicated negative yield responses at a zero biomass response to eCO2 for grasses. K and Zn nutrient yields responded positively to eCO2 in forbs and Mn and Fe responded positively in forbs and legumes. The results suggest that under eCO2 the nutrient concentrations were not diluted by the CO2 fertilization effect. Rather, altered plant nutrient acquisitions via changed physiological mechanisms prevail for increased C assimilation under eCO2. Furthermore, other factors such as water or nutrient availability affected plant nutrient concentrations under eCO2.

Differential responses of the sunn4 and rdn1-1 super-nodulation mutants of Medicago truncatula to elevated atmospheric CO2

BACKGROUND AND AIMS

Nitrogen fixation in legumes requires tight control of carbon and nitrogen balance. Thus, legumes control nodule numbers via an autoregulation mechanism. 'Autoregulation of nodulation' mutants super-nodulate are thought to be carbon-limited due to the high carbon-sink strength of excessive nodules. This study aimed to examine the effect of increasing carbon supply on the performance of super-nodulation mutants.

METHODS

We compared the responses of Medicago truncatula super-nodulation mutants (sunn-4 and rdn1-1) and wild type to five CO2 levels (300-850 μmol mol-1). Nodule formation and nitrogen fixation were assessed in soil-grown plants at 18 and 42 d after sowing.

KEY RESULTS

Shoot and root biomass, nodule number and biomass, nitrogenase activity and fixed nitrogen per plant of all genotypes increased with increasing CO2 concentration and reached a maximum at 700 μmol mol-1. While the sunn-4 mutant showed strong growth retardation compared with wild-type plants, elevated CO2 increased shoot biomass and total nitrogen content of the rdn1-1 mutant up to 2-fold. This was accompanied by a 4-fold increase in nitrogen fixation capacity in the rdn1-1 mutant.

CONCLUSIONS

These results suggest that the super-nodulation phenotype per se did not limit growth. The additional nitrogen fixation capacity of the rdn1-1 mutant may enhance the benefit of elevated CO2 for plant growth and N2 fixation.

A meta-analysis of the combined effects of elevated carbon dioxide and chronic warming on plant %N, protein content and N-uptake rate

Elevated CO₂ (eCO₂) and high temperatures are known to affect plant nitrogen (N) metabolism. Though the combined effects of eCO₂ and chronic warming on plant N relations have been studied in some detail, a comprehensive statistical review on this topic is lacking. This meta-analysis examined the effects of eCO₂ plus warming on shoot and root %N, tissue protein concentration (root, shoot and grain) and N-uptake rate. In the analyses, the eCO₂ treatment was categorized into two classes (<300 or ≥300 ppm above ambient or control), the temperature treatment was categorized into three classes (<1.5, 1.5-5 and >5 °C above ambient or control), plant species were categorized based on growth form and functional group and CO₂ treatment technique was also investigated. Elevated CO₂ alone or in combination with warming reduced shoot %N (more so at ≥300 vs. <300 ppm above ambient CO₂), while root %N was significantly reduced only by eCO₂; warming alone often increased shoot %N, but mostly did not affect root %N. Decreased shoot %N with eCO₂ alone or eCO₂ plus warming was greater for woody and non-woody dicots than for grasses, and for legumes than non-legumes. Though root N-uptake rate was unaffected by eCO₂, eCO₂ plus warming decreased N-uptake rate, while warming alone increased it. Similar to %N, protein concentration decreased with eCO₂ in shoots and grain (but not roots), increased with warming in grain and decreased with eCO₂ and warming in grain. In summary, any benefits of warming to plant N status and root N-uptake rate will generally be offset by negative effects of eCO₂. Hence, concomitant increases in CO₂ and temperature are likely to negate or decrease the nutritional quality of plant tissue consumed as food by decreasing shoot %N and shoot and/or grain protein concentration, caused, at least in part, by decreased root N-uptake rate.

Rice inter-subspecies hybridization can improve nitrogen use efficiency

This article comments on:

Sun Y, Wu Y, Wang YZ, Wang S, Wang X, Li G, Zhang X, Liang Z, Li J, Gong L, Wendel JF, Wang D, Liu B. 2021. Homoploid F1 hybrids and segmental allotetraploids of japonica and indica rice subspecies show similar and enhanced tolerance to nitrogen deficiency than parental lines. Journal of Experimental Botany 72, 5612–5624.

Elevated Atmospheric CO2 and Nitrogen Fertilization Affect the Abundance and Community Structure of Rice Root-Associated Nitrogen-Fixing Bacteria

Elevated atmospheric CO2 (eCO2) results in plant growth and N limitation, yet how root-associated nitrogen-fixing bacterial communities respond to increasing atmospheric CO2 and nitrogen fertilization (eN) during the growth stages of rice is unclear. Using the nifH gene as a molecular marker, we studied the combined effect of eCO2 and eN on the diazotrophic community and abundance at two growth stages in rice (tillering, TI and heading, HI). Quantitative polymerase chain reaction (qPCR) showed that eN had no obvious effect on nifH abundance in rice roots under either ambient CO2 (aCO2) or eCO2 treatment at the TI stage; in contrast, at the HI, nifH copy numbers were increased under eCO2 and decreased under aCO2. For rhizosphere soils, eN significantly reduced the abundance of nifH under both aCO2 and eCO2 treatment at the HI stage. Elevated CO2 significantly increased the nifH abundance in rice roots and rhizosphere soils with nitrogen fertilization, but had no obvious effect without N addition at the HI stage. There was a significant interaction [CO2 × N fertilization] effect on nifH abundance in root zone at the HI stage. In addition, the nifH copy numbers in rice roots were significantly higher at the HI stage than at the TI stage. Sequencing analysis indicated that the root-associated diazotrophic community structure tended to cluster according to the nitrogen fertilization treatment and that Rhizobiales were the dominant diazotrophs in all root samples at the HI stage. Additionally, nitrogen fertilization significantly increased the relative abundance of Methylosinus (Methylocystaceae) under eCO2 treatment, but significantly decreased the relative abundance of Rhizobium (Rhizobiaceae) under aCO2 treatment. Overall, the combined effect of eN and eCO2 stimulates root-associated diazotrophic methane-oxidizing bacteria while inhibits heterotrophic diazotrophs.

The Interactive Effect of Elevated CO2 and Herbivores on the Nitrogen-Fixing Plant Alnus incana ssp. rugosa

Many studies have found that future predicted CO2 levels can increase plant mass but dilute N content in leaves, impacting antiherbivore compounds. Nitrogen-fixing plants may balance their leaf C:N ratio under elevated CO2, counteracting this dilution effect. However, we know little of how plants respond to herbivores at the higher CO2 levels that occurred when nitrogen-fixing plants first evolved. We grew Alnus incana ssp. rugosa was grown at 400, 800, or 1600 ppm CO2 in soil collected from the field, inoculated with Frankia and exposed to herbivores (Orgyia leucostigma). Elevated CO2 increased nodulated plant biomass and stimulated the nitrogen fixation rate in the early growth stage. However, nitrogen-fixing plants were not able to balance their C:N ratio under elevated CO2 after growing for 19 weeks. When plants were grown at 400 and 1600 ppm CO2, herbivores preferred to feed on leaves of nodulated plants. At 800 ppm CO2, nodulated plants accumulated more total phenolic compounds in response to herbivore damage than plants in the non-Frankia and non-herbivore treatments. Our results suggest that plant leaf defence, not leaf nutritional content, is the dominant driver of herbivory and nitrogen-fixing plants have limited ability to balance C:N ratios at elevated CO2 in natural soil.

Ancient CO2 levels favor nitrogen fixing plants over a broader range of soil N compared to present

Small inreases in CO₂ stimulate nitrogen fixation and plant growth. Increasing soil N can inhibit nitrogen fixation. However, no studies to date have tested how nitrogen fixing plants perform under ancient CO₂ levels (100 MYA), when nitrogen fixing plants evolved, with different levels of N additions. The aim of this study was to assess if ancient CO₂, compared to present, favors nitrogen fixers over a range of soil nitrogen concentrations. Nitrogen fixers (Alnus incana ssp. rugosa, Alnus viridis ssp. crispa, and Alnus rubra) and their close non-nitrogen fixing relatives (Betula pumila, Betula papyrifera, Betula glandulosa) were grown at ancient (1600 ppm) or present (400 ppm) CO₂ over a range of soil N levels, equivalent to 0, 10, 50, and 200 kg N ha^-1 year^-1. The growth of non-N fixing plants increased more than N fixing plants in response to the increasing N levels. When grown at an ancient CO₂ level, the N level at which non-nitrogen fixing plant biomass exceeded nitrogen fixing plant biomass was twice as high (61 kg N ha^-1 year^-1) as the N level when plants were grown at the ambient CO₂ level. Specific nodule activity was also reduced with an increasing level of soil N. Our results show there was a greater advantage in being a nitrogen fixer under ancient levels of CO₂ compared with the present CO₂ level.

Effect of elevated carbon-dioxide on plant growth, physiology, yield and seed quality of chickpea (Cicer arietinum L.) in Indo-Gangetic plains

In the present scenario of climate change with constantly increasing CO₂ concentration, there is a risk of altered crop performance in terms of growth, yield, grain nutritional value and seed quality. Therefore, an experiment was conducted in open top chamber (OTCs) during 2017-18 and 2018-19 to assess the effect of elevated atmospheric carbondioxide (e[CO₂]) (600 ppm) on chickpea (cv. JG 14) crop growth, biomass accumulation, physiological function, seed yield and its quality in terms of germination and vigour. The e[CO₂] treatment increased the plant height, leaf and stem biomass over ambient CO₂ (a[CO₂]) treatment. The e[CO₂] increased seed yield by 11-18% which was attributed to an increase in the number of pods (6-10%) and seeds plant^-1 (8-9%) over a[CO₂]. However, e[CO₂] reduced the seed protein (7%), total phenol (13%) and thiobarbituric acid reactive substances (12%) and increased the starch (21%) and water uptake rate as compared to seeds harvested from a[CO₂] environment. Exposing chickpea plant to e[CO₂] treatment had no impact on germination and vigour of the harvested seeds. Also, the physical attributes, total soluble sugar and antioxidant enzymes activities of harvested seeds were comparable in a[CO₂] and e[CO₂] treatment. Hence, the experimental findings depict that e[CO₂] upto 600 ppm could add to the growth and productivity of chickpea in a sub-tropical climate with an implication on its nutritional quality of the produce.

Effect of elevated ozone and carbon dioxide interaction on growth, yield, nutrient content and wilt disease severity in chickpea grown in Northern India

Wilt caused by Fusarium oxysporum, sp. Ciceris (FOC) is an important disease causing losses up to 10% in chickpea yield. Experiments were conducted growing chickpea in free air ozone and carbon dioxide enrichment rings under four treatments of elevated ozone (O3) (EO:60 ± 10 ppb), elevated carbon dioxide (CO2) (ECO2:550 ± 25 ppm), combination of elevated CO2 and O3 (EO + ECO2) and ambient control for quantifying the effect on growth, yield, biochemical and nutrient content of chickpea. For studying the impact on wilt disease, chickpea was grown additionally in pots with soil containing FOC in these rings. The incidence of Fusarium wilt reduced significantly (p < 0.01) under EO as compared to ambient and ECO2. The activities of pathogenesis-related proteins chitinase and β-1,3- glucanase, involved in plant defense mechanism were enhanced under EO. The aboveground biomass and pod weight declined by 18.7 and 15.8% respectively in uninnoculated soils under EO, whereas, in FOC inoculated soil (diseased plants), the decline under EO was much less at 8.6 and 9.9% as compared to the ambient. Under EO, the activity of super oxide dismutase increased significantly (p < 0.5, 40%) as compared to catalase (12.5%) and peroxidase (17.5%) without any significant increase under EO + ECO2. The proline accumulation was significantly (p < 0.01) higher in EO as compared to EO + ECO2, and ECO2. The seed yield declined under EO due to significant reduction (p < 0.01) in the number of unproductive pods and seed weight. No change in the protein, total soluble sugars, calcium and phosphorus content was observed in any of the treatments, however, a significant decrease in potassium (K) content was observed under EO + ECO2. Elevated CO2 (554ppm) countered the impacts of 21.1 and 14.4 ppm h (AOT 40) O3 exposure on the seed yield and nutrient content (except K) in the EO + CO2 treatment and reduced the severity of wilt disease in the two years' study.

Eco-physiological processes are more sensitive to simulated N deposition in leguminous forbs than non-leguminous forbs in an alpine meadow of the Qinghai-Tibetan Plateau

Increased nitrogen (N) deposition can affect ecosystem processes and thus influence plant eco-physiological processes in grasslands. However, how N deposition affects eco-physiological processes of leguminous and non-leguminous forbs in alpine grasslands is understudied. A long-term field experiment using a range of simulated N deposition rates (0, 8, 24, 40, 56, and 72 kg N ha^-1 year^-1) was established to examine the effects of N deposition on various eco-physiological parameters in leguminous and non-leguminous forbs in an alpine meadow of the Qinghai-Tibetan Plateau. We found that the responses of leguminous and non-leguminous forbs to simulated N deposition varied. Net photosynthetic rate of leguminous and non-leguminous forbs exhibited different response patterns, but chronic increases in simulated N deposition rates may lead to negative effects in both functional groups. Neither functional group responded differently in aboveground biomass under the highest N addition level (72 kg N ha^-1 year^-1) compared to the control. Differences in aboveground biomass of leguminous forbs were observed at intermediate N levels. Short-term simulated N deposition significantly promoted N uptake of both functional groups. In leguminous forbs, simulated N deposition affected net photosynthetic rates (P_N) and aboveground biomass (AGB) mainly via stomatal conductance (gs), water use efficiency (WUE), and plant N uptake. In non-leguminous forbs, simulated N deposition affected P_N and AGB mainly through WUE and plant N uptake. Our findings suggest that leguminous and non-leguminous forbs have differential response mechanisms to N deposition, and compared with non-leguminous forbs, leguminous forbs are more sensitive to continuing increased N deposition. The obvious decline trend in photosynthetic capacity in leguminous forbs is likely to exacerbate the already divergent ecological processes between leguminous and non-leguminous forbs. More importantly, these changes are likely to alter the future composition, function, and stability of alpine meadow ecosystems.

Microbial functional genes commonly respond to elevated carbon dioxide

Atmospheric CO₂ concentration is increasing, largely due to anthropogenic activities. Previous studies of individual free-air CO₂ enrichment (FACE) experimental sites have shown significant impacts of elevated CO₂ (eCO₂) on soil microbial communities; however, no common microbial response patterns have yet emerged, challenging our ability to predict ecosystem functioning and sustainability in the future eCO₂ environment. Here we analyzed 66 soil microbial communities from five FACE sites, and showed common microbial response patterns to eCO₂, especially for key functional genes involved in carbon and nitrogen fixation (e.g., pcc/acc for carbon fixation, nifH for nitrogen fixation), carbon decomposition (e.g., amyA and pulA for labile carbon decomposition, mnp and lcc for recalcitrant carbon decomposition), and greenhouse gas emissions (e.g., mcrA for methane production, norB for nitrous oxide production) across five FACE sites. Also, the relative abundance of those key genes was generally increased and directionally associated with increased biomass, soil carbon decomposition, and soil moisture. In addition, a further literature survey of more disparate FACE experimental sites indicated increased biomass, soil carbon decay, nitrogen fixation, methane and nitrous oxide emissions, plant and soil carbon and nitrogen under eCO₂. A conceptual framework was developed to link commonly responsive functional genes with ecosystem processes, such as pcc/acc vs. soil carbon storage, amyA/pulA/mnp/lcc vs. soil carbon decomposition, and nifH vs. nitrogen availability, suggesting that such common responses of microbial functional genes may have the potential to predict ecosystem functioning and sustainability in the future eCO₂ environment.

Convergent Variations in the Leaf Traits of Desert Plants

Convergence is commonly caused by environmental filtering, severe climatic conditions and local disturbance. The basic aim of the present study was to understand the pattern of leaf traits across diverse desert plant species in a common garden, in addition to determining the effect of plant life forms (PLF), such as herb, shrub and subshrub, phylogeny and soil properties on leaf traits. Six leaf traits, namely carbon (C), nitrogen (N), phosphorus (P), potassium (K), δ13C and leaf water potential (LWP) of 37 dominant desert plant species were investigated and analyzed. The C, N, K and δ13C concentrations in leaves of shrubs were found higher than herbs and subshrubs; however, P and LWP levels were higher in the leaves of subshrubs following herbs and shrubs. Moreover, leaf C showed a significant positive correlation with N and a negative correlation with δ13C. Leaf N exhibited a positive correlation with P. The relationship between soil and plant macro-elements was found generally insignificant but soil C and N exhibited a significant positive correlation with leaf P. Taxonomy showed a stronger effect on leaf C, N, P and δ13C than soil properties, explaining >50% of the total variability. C3 plants showed higher leaf C, N, P, K and LWP concentration than C4 plants, whereas C4 plants had higher δ13C than C3 plants. Legumes exhibited higher leaf C, N, K and LWP than nonlegumes, while nonlegumes had higher P and δ13C concentration than legumes. In all the species, significant phylogenetic signals (PS) were detected for C and N and nonsignificant PS for the rest of the leaf traits. In addition, these phylogenetic signals were found lower (K-value < 1), and the maximum K-value was noted for C (K = 0.35). The plants of common garden evolved and adapted themselves for their survival in the arid environment and showed convergent variations in their leaf traits. However, these variations were not phylogenetics-specific. Furthermore, marks of convergence found in leaf traits of the study area were most likely due to the environmental factors.

Interactive effects of elevated CO2 , warming, reduced rainfall, and nitrogen on leaf gas exchange in five perennial grassland species

Global changes can interact to affect photosynthesis and thus ecosystem carbon capture, yet few multi-factor field studies exist to examine such interactions. Here, we evaluate leaf gas exchange responses of five perennial grassland species from four functional groups to individual and interactive global changes in an open-air experiment in Minnesota, USA, including elevated CO₂ (eCO₂ ), warming, reduced rainfall and increased soil nitrogen supply. All four factors influenced leaf net photosynthesis and/or stomatal conductance, but almost all effects were context-dependent, i.e. they differed among species, varied with levels of other treatments and/or depended on environmental conditions. Firstly, the response of photosynthesis to eCO₂ depended on species and nitrogen, became more positive as vapour pressure deficit increased and, for a C₄ grass and a legume, was more positive under reduced rainfall. Secondly, reduced rainfall increased photosynthesis in three functionally distinct species, potentially via acclimation to low soil moisture. Thirdly, warming had positive, neutral or negative effects on photosynthesis depending on species and rainfall. Overall, our results show that interactions among global changes and environmental conditions may complicate predictions based on simple theoretical expectations of main effects, and that the factors and interactions influencing photosynthesis vary among herbaceous species.

Carbon sink strength of nodules but not other organs modulates photosynthesis of faba bean (Vicia faba) grown under elevated [CO2 ] and different water supply

Photosynthetic stimulation by elevated [CO₂ ] (e[CO₂ ]) may be limited by the capacity of sink organs to use photosynthates. In many legumes, N₂ -fixing symbionts in root nodules provide an additional sink, so that legumes may be better able to profit from e[CO₂ ]. However, drought not only constrains photosynthesis but also the size and activity of sinks, and little is known about the interaction of e[CO₂ ] and drought on carbon sink strength of nodules and other organs. To compare carbon sink strength, faba bean was grown under ambient (400 ppm) or elevated (700 ppm) atmospheric [CO₂ ] and subjected to well-watered or drought treatments, and then exposed to ¹³ C pulse-labelling using custom-built chambers to track the fate of new photosynthates. Drought decreased ¹³ C uptake and nodule sink strength, and this effect was even greater under e[CO₂ ], and was associated with an accumulation of amino acids in nodules. This resulted in decreased N₂ fixation, and increased accumulation of new photosynthates (¹³ C/sugars) in leaves, which in turn can feed back on photosynthesis. Our study suggests that nodule C sink activity is key to avoid sink limitation in legumes under e[CO₂ ], and legumes may only be able to achieve greater C gain if nodule activity is maintained.

An integrated research framework combining genomics, systems biology, physiology, modelling and breeding for legume improvement in response to elevated CO2 under climate change scenario

How unprecedented changes in climatic conditions will impact yield and productivity of some crops and their response to existing stresses, abiotic and biotic interactions is a key global concern. Climate change can also alter natural species' abundance and distribution or favor invasive species, which in turn can modify ecosystem dynamics and the provisioning of ecosystem services. Basic anatomical differences in C3 and C4 plants lead to their varied responses to climate variations. In plants having a C3 pathway of photosynthesis, increased atmospheric carbon dioxide (CO2) positively regulates photosynthetic carbon (C) assimilation and depresses photorespiration. Legumes being C3 plants, they may be in a favorable position to increase biomass and yield through various strategies. This paper comprehensively presents recent progress made in the physiological and molecular attributes in plants with special emphasis on legumes under elevated CO2 conditions in a climate change scenario. A strategic research framework for future action integrating genomics, systems biology, physiology and crop modelling approaches to cope with changing climate is also discussed. Advances in sequencing and phenotyping methodologies make it possible to use vast genetic and genomic resources by deploying high resolution phenotyping coupled with high throughput multi-omics approaches for trait improvement. Integrated crop modelling studies focusing on farming systems design and management, prediction of climate impacts and disease forecasting may also help in planning adaptation. Hence, an integrated research framework combining genomics, plant molecular physiology, crop breeding, systems biology and integrated crop-soil-climate modelling will be very effective to cope with climate change.

Endophytes alleviate the elevated CO2-dependent decrease in photosynthesis in rice, particularly under nitrogen limitation

The positive effects of high atmospheric CO2 concentrations [CO2] decrease over time in most C3 plants because of down-regulation of photosynthesis. A notable exception to this trend is plants hosting N-fixing bacteria. The decrease in photosynthetic capacity associated with an extended exposure to high [CO2] was therefore studied in non-nodulating rice that can establish endophytic interactions. Rice plants were inoculated with diazotrophic endophytes isolated from the Salicaceae and CO2 response curves of photosynthesis were determined in the absence or presence of endophytes at the panicle initiation stage. Non-inoculated plants grown under elevated [CO2] showed a down-regulation of photosynthesis compared to those grown under ambient [CO2]. In contrast, the endophyte-inoculated plants did not show a decrease in photosynthesis associated with high [CO2], and they exhibited higher photosynthetic electron transport and mesophyll conductance rates than non-inoculated plants under high [CO2]. The endophyte-dependent alleviation of decreases in photosynthesis under high [CO2] led to an increase in water-use efficiency. These effects were most pronounced when the N supply was limited. The results suggest that inoculation with N-fixing endophytes could be an effective means of improving plant growth under high [CO2] by alleviating N limitations.

Genetic strategies for improving crop yields

The current trajectory for crop yields is insufficient to nourish the world's population by 20501. Greater and more consistent crop production must be achieved against a backdrop of climatic stress that limits yields, owing to shifts in pests and pathogens, precipitation, heat-waves and other weather extremes. Here we consider the potential of plant sciences to address post-Green Revolution challenges in agriculture and explore emerging strategies for enhancing sustainable crop production and resilience in a changing climate. Accelerated crop improvement must leverage naturally evolved traits and transformative engineering driven by mechanistic understanding, to yield the resilient production systems that are needed to ensure future harvests.

Genetic strategies for improving crop yields

The current trajectory for crop yields is insufficient to nourish the world's population by 2050¹. Greater and more consistent crop production must be achieved against a backdrop of climatic stress that limits yields, owing to shifts in pests and pathogens, precipitation, heat-waves and other weather extremes. Here we consider the potential of plant sciences to address post-Green Revolution challenges in agriculture and explore emerging strategies for enhancing sustainable crop production and resilience in a changing climate. Accelerated crop improvement must leverage naturally evolved traits and transformative engineering driven by mechanistic understanding, to yield the resilient production systems that are needed to ensure future harvests.

Regulation of Symbiotic Nitrogen Fixation in Legume Root Nodules

In most legume nodules, the di-nitrogen (N2)-fixing rhizobia are present as organelle-like structures inside their root host cells. Many processes operate and interact within the symbiotic relationship between plants and nodules, including nitrogen (N)/carbon (C) metabolisms, oxygen flow through nodules, oxidative stress, and phosphorous (P) levels. These processes, which influence the regulation of N2 fixation and are finely tuned on a whole-plant basis, are extensively reviewed in this paper. The carbonic anhydrase (CA)-phosphoenolpyruvate carboxylase (PEPC)-malate dehydrogenase (MDH) is a key pathway inside nodules involved in this regulation, and malate seems to play a crucial role in many aspects of symbiotic N2 fixation control. How legumes specifically sense N-status and how this stimulates all of the regulatory factors are key issues for understanding N2 fixation regulation on a whole-plant basis. This must be thoroughly studied in the future since there is no unifying theory that explains all of the aspects involved in regulating N2 fixation rates to date. Finally, high-throughput functional genomics and molecular tools (i.e., miRNAs) are currently very valuable for the identification of many regulatory elements that are good candidates for accurately dissecting the particular N2 fixation control mechanisms associated with physiological responses to abiotic stresses. In combination with existing information, utilizing these abundant genetic molecular tools will enable us to identify the specific mechanisms underlying the regulation of N2 fixation.

Strong photosynthetic acclimation and enhanced water-use efficiency in grassland functional groups persist over 21 years of CO2 enrichment, independent of nitrogen supply

Uncertainty about long-term leaf-level responses to atmospheric CO₂ rise is a major knowledge gap that exists because of limited empirical data. Thus, it remains unclear how responses of leaf gas exchange to elevated CO₂ (eCO₂ ) vary among plant species and functional groups, or across different levels of nutrient supply, and whether they persist over time for long-lived perennials. Here, we report the effects of eCO₂ on rates of net photosynthesis and stomatal conductance in 14 perennial grassland species from four functional groups over two decades in a Minnesota Free-Air CO₂ Enrichment experiment, BioCON. Monocultures of species belonging to C₃ grasses, C₄ grasses, forbs, and legumes were exposed to two levels of CO₂ and nitrogen supply in factorial combinations over 21 years. eCO₂ increased photosynthesis by 12.9% on average in C₃ species, substantially less than model predictions of instantaneous responses based on physiological theory and results of other studies, even those spanning multiple years. Acclimation of photosynthesis to eCO₂ was observed beginning in the first year and did not strengthen through time. Yet, contrary to expectations, the response of photosynthesis to eCO₂ was not enhanced by increased nitrogen supply. Differences in responses among herbaceous plant functional groups were modest, with legumes responding the most and C₄ grasses the least as expected, but did not further diverge over time. Leaf-level water-use efficiency increased by 50% under eCO₂ primarily because of reduced stomatal conductance. Our results imply that enhanced nitrogen supply will not necessarily diminish photosynthetic acclimation to eCO₂ in nitrogen-limited systems, and that significant and consistent declines in stomatal conductance and increases in water-use efficiency under eCO₂ may allow plants to better withstand drought.

Combining the effects of increased atmospheric carbon dioxide on protein, iron, and zinc availability and projected climate change on global diets: a modelling study

BACKGROUND

Increasing atmospheric concentrations of carbon dioxide (CO2) affect global nutrition via effects on agricultural productivity and nutrient content of food crops. We combined these effects with economic projections to estimate net changes in nutrient availability between 2010 and 2050.

METHODS

In this modelling study, we used the International Model for Policy Analysis of Agricultural Commodities and Trade to project per capita availability of protein, iron, and zinc in 2050. We used estimated changes in productivity of individual agricultural commodities to model effects on production, trade, prices, and consumption under moderate and high greenhouse gas emission scenarios. Two independent sources of data, which used different methodologies to determine the effect of increased atmospheric CO2 on different key crops, were combined with the modelled food supply results to estimate future nutrient availability.

FINDINGS

Although technological change, market responses, and the effects of CO2 fertilisation on yield are projected to increase global availability of dietary protein, iron, and zinc, these increases are moderated by negative effects of climate change affecting productivity and carbon penalties on nutrient content. The carbon nutrient penalty results in decreases in the global availability of dietary protein of 4·1%, iron of 2·8%, and zinc of 2·5% as calculated using one dataset, and decreases in global availability of dietary protein of 2·9%, iron of 3·9%, and zinc of 3·4% using the other dataset. The combined effects of projected increases in atmospheric CO2 (ie, carbon nutrient penalty, CO2 fertilisation, and climate effects on productivity) will decrease growth in the global availability of nutrients by 19·5% for protein, 14·4% for iron, and 14·6% for zinc relative to expected technology and market gains by 2050. The many countries that currently have high levels of nutrient deficiency would continue to be disproportionately affected.

INTERPRETATION

This approach is an improvement in estimating future global food security by simultaneously projecting climate change effects on crop productivity and changes in nutrient content under increased concentrations of CO2, which accounts for a much larger effect on nutrient availability than CO2 fertilisation. Regardless of the scenario used to project future consumption patterns, the net effect of increasing concentrations of atmospheric CO2 will slow progress in decreasing global nutrient deficiencies.

FUNDING

US Environmental Protection Agency, Consultative Group on International Agricultural Research (CIGAR) Research Program on Policies, Institutions and Markets (PIM), and the CGIAR Research Program on Climate Change and Food Security (CCAFS).

Legumes regulate grassland soil N cycling and its response to variation in species diversity and N supply but not CO2

Legumes are an important component of plant diversity that modulate nitrogen (N) cycling in many terrestrial ecosystems. Limited knowledge of legume effects on soil N cycling and its response to global change factors and plant diversity hinders a general understanding of whether and how legumes broadly regulate the response of soil N availability to those factors. In a 17-year study of perennial grassland species grown under ambient and elevated (+180 ppm) CO₂ and ambient and enriched (+4 g N m^-2  year^-1 ) N environments, we compared pure legume plots with plots dominated by or including other herbaceous functional groups (and containing one or four species) to assess the effect of legumes on N cycling (net N mineralization rate and inorganic N pools). We also examined the effects of numbers of legume species (from zero to four) in four-species mixed plots on soil N cycling. We hypothesized that legumes would increase N mineralization rates most in those treatments with the greatest diversity and the greatest relative limitation by and competition for N. Results partially supported these hypotheses. Plots with greater dominance by legumes had greater soil nitrate concentrations and mineralization rates. Higher species richness significantly increased the impact of legumes on soil N metrics, with 349% and 505% higher mineralization rates and nitrate concentrations in four-species plots containing legumes compared to legume-free four-species plots, in contrast to 185% and 129% greater values, respectively, in pure legume than nonlegume monoculture plots. N-fertilized plots had greater legume effects on soil nitrate, but lower legume effects on net N mineralization. In contrast, neither elevated CO₂ nor its interaction with legumes affected net N mineralization. These results indicate that legumes markedly influence the response of soil N cycling to some, but not all, global change drivers.

Elevated CO2 and temperature increase grain oil concentration but their impacts on grain yield differ between soybean and maize grown in a temperate region

The increases in CO2 concentration and attendant temperature are likely to impact agricultural production. This study investigated the effects of elevated temperature alone and in combination with CO2 enrichment on grain yield and quality of soybean (Glycine max) and maize (Zea mays) grown in a Mollisol over five-year growing seasons. Plants were grown in open-top chambers with the ambient control, 2.1 °C increase in air temperature (eT) and eT together with 700 ppm atmospheric CO2 concentration (eTeCO2). While eTeCO2 but not eT increased the mean grain yield of soybean by 31%, eTeCO2 and eT increased the yield of maize similarly by around 25% compared to the ambient control. Furthermore, eT and eTeCO2 did not significantly affect grain protein of either species but consistently increased oil concentrations in grains of both species with eTeCO2 increasing more. The eT increased grain Fe concentration relative to the control treatment but decreased Ca concentration, while the relative concentrations of P, K, Mn and Zn varied with crop species. The elevated CO2 enlarged the eT effect on Fe concentration, but decreased the effect on Ca concentration. The results suggest that crop selection is important to maximize yield benefits and to maintain grain quality to cope with elevated CO2 and temperature of future climate change in this temperate region where the temperature is near or below the optimal temperature for crop production.

Mitigation of drought-induced oxidative damage by enhanced carbon assimilation and an efficient antioxidative metabolism under high CO2 environment in pigeonpea (Cajanus cajan L.)

In the current study, pigeonpea (Cajanus cajan L.), a promising legume food crop was assessed for its photosynthetic physiology, antioxidative system as well as C and N metabolism under elevated CO₂ and combined drought stress (DS). Pigeonpea was grown in open top chambers under elevated CO₂ (600 µmol mol^-1) and ambient CO₂ (390 ± 20 µmol mol^-1) concentrations, later subjected to DS by complete water withholding. The DS plants were re-watered and recovered (R) to gain normal physiological growth and assessed the recoverable capacity in both elevated and ambient CO₂ concentrations. The elevated CO₂ grown pigeonpea showed greater gas exchange physiology, nodule mass and total dry biomass over ambient CO₂ grown plants under well-watered (WW) and DS conditions albeit a decrease in leaf relative water content (LRWC). Glucose, fructose and sucrose levels were measured to understand the role of hexose to sucrose ratios (H:S) in mediating the drought responses. Free amino acid levels as indicative of N assimilation provided insights into C and N balance under DS and CO₂ interactions. The enzymatic and non-enzymatic antioxidants showed significant upregulation in elevated CO₂ grown plants under DS thereby protecting the plant from oxidative damage caused by the reactive oxygen species. Our results clearly demonstrated the protective role of elevated CO₂ under DS at lower LRWC and gained comparative advantage of mitigating the DS-induced damage over ambient CO₂ grown pigeonpea.

Impacts of Atmospheric CO2 and Soil Nutritional Value on Plant Responses to Rhizosphere Colonization by Soil Bacteria

Concerns over rising atmospheric CO₂ concentrations have led to growing interest in the effects of global change on plant-microbe interactions. As a primary substrate of plant metabolism, atmospheric CO₂ influences below-ground carbon allocation and root exudation chemistry, potentially affecting rhizosphere interactions with beneficial soil microbes. In this study, we have examined the effects of different atmospheric CO₂ concentrations on Arabidopsis rhizosphere colonization by the rhizobacterial strain Pseudomonas simiae WCS417 and the saprophytic strain Pseudomonas putida KT2440. Rhizosphere colonization by saprophytic KT2440 was not influenced by sub-ambient (200 ppm) and elevated (1,200 ppm) concentrations of CO₂, irrespective of the carbon (C) and nitrogen (N) content of the soil. Conversely, rhizosphere colonization by WCS417 in soil with relatively low C and N content increased from sub-ambient to elevated CO₂. Examination of plant responses to WCS417 revealed that plant growth and systemic resistance varied according to atmospheric CO₂ concentration and soil-type, ranging from growth promotion with induced susceptibility at sub-ambient CO₂, to growth repression with induced resistance at elevated CO₂. Collectively, our results demonstrate that the interaction between atmospheric CO₂ and soil nutritional status has a profound impact on plant responses to rhizobacteria. We conclude that predictions about plant performance under past and future climate scenarios depend on interactive plant responses to soil nutritional status and rhizobacteria.

Water availability moderates N2 fixation benefit from elevated [CO2 ]: A 2-year free-air CO2 enrichment study on lentil (Lens culinaris MEDIK.) in a water limited agroecosystem

Increased biomass and yield of plants grown under elevated [CO₂ ] often corresponds to decreased grain N concentration ([N]), diminishing nutritional quality of crops. Legumes through their symbiotic N₂ fixation may be better able to maintain biomass [N] and grain [N] under elevated [CO₂ ], provided N₂ fixation is stimulated by elevated [CO₂ ] in line with growth and yield. In Mediterranean-type agroecosystems, N₂ fixation may be impaired by drought, and it is unclear whether elevated [CO₂ ] stimulation of N₂ fixation can overcome this impact in dry years. To address this question, we grew lentil under two [CO₂ ] (ambient ~400 ppm and elevated ~550 ppm) levels in a free-air CO₂ enrichment facility over two growing seasons sharply contrasting in rainfall. Elevated [CO₂ ] stimulated N₂ fixation through greater nodule number (+27%), mass (+18%), and specific fixation activity (+17%), and this stimulation was greater in the high than in the low rainfall/dry season. Elevated [CO₂ ] depressed grain [N] (-4%) in the dry season. In contrast, grain [N] increased (+3%) in the high rainfall season under elevated [CO₂ ], as a consequence of greater post-flowering N₂ fixation. Our results suggest that the benefit for N₂ fixation from elevated [CO₂ ] is high as long as there is enough soil water to continue N₂ fixation during grain filling.

Similar photosynthetic response to elevated carbon dioxide concentration in species with different phloem loading strategies

Species have different strategies for loading sugars into the phloem, which vary in the route that sugars take to enter the phloem and the energetics of sugar accumulation. Species with passive phloem loading are hypothesized to have less flexibility in response to changes in some environmental conditions because sucrose export from mesophyll cells is dependent on fixed anatomical plasmodesmatal connections. Passive phloem loaders also have high mesophyll sugar content, and may be less likely to exhibit sugar-mediated down-regulation of photosynthetic capacity at elevated CO₂ concentrations. To date, the effect of phloem loading strategy on the response of plant carbon metabolism to rising atmospheric CO₂ concentrations is unclear, despite the widespread impacts of rising CO₂ on plants. Over three field seasons, five species with apoplastic loading, passive loading, or polymer-trapping were grown at ambient and elevated CO₂ concentration in free air concentration enrichment plots. Light-saturated rate of photosynthesis, photosynthetic capacity, leaf carbohydrate content, and anatomy were measured and compared among the species. All five species showed significant stimulation in midday photosynthetic CO₂ uptake by elevated CO₂ even though the two passive loading species showed significant down-regulation of maximum Rubisco carboxylation capacity at elevated CO₂. There was a trend toward greater starch accumulation at elevated CO₂ in all species, and was most pronounced in passive loaders. From this study, we cannot conclude that phloem loading strategy is a key determinant of plant response to elevated CO₂, but compelling differences in response counter to our hypothesis were observed. A phylogenetically controlled experiment with more species may be needed to fully test the hypothesis.