Aleuts, Sea Otters, and Alternate Stable-State Communities

Insights Gained from Including People in Our Models of Nature and Modes of Science

Across the natural sciences, humans are typically conceptualized as external disruptors of nature rather than adaptable components of it. Historical evidence, however, challenges this dominant schema. Here, we describe the broad repertoire of ecological functions performed by people in place-based societies across the Pacific Ocean over millennia, illustrating their roles as ecosystem engineers, dispersers, bioturbators, nutrient cyclers, predators, and herbivores. By considering the reciprocal relationships between people and the ecosystems within which they are embedded, evidence of humanity's ability to experiment, learn, adapt, innovate, and sustain diverse and resilient social-ecological relationships emerges. Therefore, recognizing people as inseparable components of marine ecosystems and their millennia of engagement with coastal ocean spaces is critical to both understanding marine ecosystems and devising resilient and equitable ocean policies.

Forecasting sea otter recolonization: insights from isotopic analysis of modern and zooarchaeological populations

Retrospective datasets offer essential context for conservation by revealing species' ecological roles before industrial-era human impacts. We analysed isotopic compositions of pre-industrial and modern sea otters (Enhydra lutris) to reconstruct pre-extirpation ecology and offer insights for management. Our study focuses on southeast Alaska (SEAK), where sea otters are recolonizing, and northern Oregon, where translocations are being considered. We measured bulk bone collagen δ13C and δ15N values and essential amino acid δ13C values of extirpated sea otters from archaeological contexts, and bulk isotopic values from vibrissae of modern SEAK sea otters. We compare these results with published isotopic data of potential prey and additional archaeological datasets. In SEAK, our data show pre-industrial sea otter populations consumed infaunal bivalves and used soft-sediment (33%) and kelp forest habitats (67%), with sub-regional variation. We anticipate current populations will expand into this historical niche, and conflict with regional traditional/subsistence bivalve fisheries will persist. In northern Oregon, isotopic data from extirpated sea otters indicate past consumption of low trophic level invertebrates and a stronger reliance on kelp forests (88%) rather than soft-sediment habitats, highlighting the importance of kelp forests for future translocations. Our work exemplifies the value of historical ecology in informing conservation strategies for recovering species.

Effects of Rock Type and Food Availability on Bioerosion by the Purple Sea Urchin, Strongylocentrotus purpuratus

Purple sea urchins (Strongylocentrotus purpuratus) profoundly impact nearshore rocky coasts through their feeding habits. Their intense grazing sculpts substrates through bioerosion using their teeth and spines and controls the alternative stable state dynamic between kelp bed and urchin barrens. These states have contrasting food availability for sea urchins, with abundant food in kelp beds and scarce food in barren grounds. However, the relationship between food availability and bioerosion is unknown. We predicted that when kelp is available, it would ameliorate the action of teeth on the substrate. Our 11-week long, 2 × 2 factorial experiment, crossed community state (kelp present vs absent) and rock type (sandstone vs mudstone). We also quantified the contribution of spine abrasion to bioerosion on the two rock types. The bioerosion rates did not differ between treatments with and without kelp. Although there was no significant difference in net bioerosion between the rock types, there was a large difference between the proportion of bioerosion from teeth vs spine abrasion. Approximately a third of the sandstone bioerosion was from spines whereas less than 2% of mudstone bioerosion could be attributed to spines. As anticipated, growth of sea urchins fed kelp ad-libitum was higher than food-limited sea urchins. Surprisingly, sea urchins on mudstone (which has a higher organic component) grew faster than sea urchins on sandstone. Although bioerosion rates may not differ on a per-urchin basis between community states, the sea urchin population densities between kelp beds and urchin barrens likely causes a difference in net bioerosion between these communities. Our results point to the importance of lithology on the mechanics of sea urchin bioerosion. Differences in texture, grain size, and hardness of rock substrates undoubtedly contribute to bioerosion rates and dynamics.

Kelp forests versus urchin barrens: a comparison of ecosystem functions and services provided by two alternative stable marine habitats

Kelp forests and urchin barrens are two stable states in rocky reef ecosystems, each providing unique ecosystem functions like habitat for marine species and primary production. While studies frequently show that kelp forests support higher levels of some ecosystem functions than urchin barren habitats, no research has yet compared average differences. To address this gap, we first conducted a meta-analysis of studies that directly compared the ecosystem functions, services and general attributes provided by each habitat. We also compiled individual studies on ecosystem properties from both habitats and qualitatively assessed the benefits provided. The meta-analysis included 388 observations from 55 studies across 14 countries. We found that kelp forests consistently delivered higher levels of ecosystem properties such as biodiversity, species richness, abalone abundance and sea urchin roe quality. Urchin barrens supported higher urchin density and crustose coralline algae cover. The qualitative review further supported these findings, showing that kelp forests ranked higher in 11 out of 15 ecosystem properties. These findings can help guide decisions on managing rocky reef habitats and demonstrate the benefits of preserving or expanding kelp forests.

From Individual Calcifiers to Ecosystem Dynamics: Ocean Acidification Effects on Urchins and Abalone

A central question in ecology is to what extent do trophic interactions govern the structure and function of communities? This question is becoming more pressing as trophic interactions shift with rapid climate change. Sea urchins and abalone are key invertebrates in the habitats where they reside. Sea urchins are critical members of exemplar trophic cascades in kelp forests due to their impact on kelp establishment and maintenance; yet their populations are controlled by predators, such as sea otters and sunflower sea stars. Abalone compete with urchins for macroalgal food resources and therefore can help regulate urchin populations in kelp forests. Given that both urchin tests and abalone shells used for predator defense are comprised of calcium carbonate, much research has been conducted on the impacts of ocean acidification (OA) on these calcified structures. A growing body of literature has shown that urchin tests are less calcified and break with less force under OA conditions. Less is known about abalone, but their shells also appear to respond negatively to OA. Using kelp forest communities as exemplar ecosystems, we discuss the morphological, biomechanical, and physiological responses to OA in urchins and abalone and consider how these individual level responses scale to trophic interactions and ultimately whole ecosystem processes. Although the impacts of OA on the calcified structures used for defense have been well studied, calcified mechanisms for food consumption, such as the Aristotle's lantern of urchins, are much less understood. Thus, examining both the feeding and defense sides of trophic interactions would greatly improve our understanding of OA responses across individual to ecosystem scales. More generally, measurements of morphological, biomechanical, and physiological responses to OA can be made in individuals to help predict higher level ecological responses, which would greatly contribute to broader predictions of whole ecosystem responses to OA.

Long-term marine protection enhances kelp forest ecosystem stability

Trophic downgrading destabilizes ecosystems and can drive large-scale shifts in ecosystem state. While restoring predatory interactions in marine reserves can reverse anthropogenic-driven shifts, empirical evidence of increased ecosystem stability and persistence in the presence of predators is scant. We compared temporal variation in rocky reef ecosystem state in New Zealand's oldest marine reserve to nearby fished reefs to examine whether protection of predators led to more persistent and stable reef ecosystem states in the marine reserve. Contrasting ecosystem states were found between reserve and fished sites, and this persisted over the 22-year study period. Fished sites were predominantly urchin barrens but occasionally fluctuated to short-lived turfs and mixed algal forests, while reserve sites displayed unidirectional successional trajectories toward stable kelp forests (Ecklonia radiata) taking up to three decades following protection. This provides empirical evidence that long-term protection of predators facilitates kelp forest recovery, resists shifts to denuded alternate states, and enhances kelp forest stability.

Salt marsh vegetation change during a half-century of experimental nutrient addition and climate-driven controls in Great Sippewissett Marsh

Vegetative cover was mapped annually, 1976-2022, in experimental plots in Great Sippewissett Marsh, Cape Cod, USA, chronically fertilized at different doses, and subject to changes in sea level and other climate-related variables. Dominant species within areas of higher elevation in the plots followed different decadal trajectories: rise in sea level diminished cover of Spartina patens; higher N supplies increased cover of Distichlis spicata. The opportunistic growth response of D. spicata to high N supplies unexpectedly fostered increased platform accretion, a feature that persisted for succeeding decades and led to further changes in vegetation: D. spicata functioned as an effective ecosystem engineer with long-term ecological consequences. Shrubs usually found in upper marsh margins expanded into areas where D. spicata had stimulated accretion, then shaded and excluded D. spicata, but subsequently lost cover as sea level rise continued. Increased N supply converted stands of Spartina alterniflora, the dominant low marsh species, from short to taller ecophenotypes; sea level rise had minor effects on S. alterniflora, but during 2019-2022 appeared to reach a tipping point that fostered taller S. alterniflora and bare space even in un-fertilized control plots, and in Great Sippewissett Marsh in general. Model results anticipate that-in spite of potential accretion enhanced by vegetation and ecosystem engineer effects-there will be loss of high marsh, transient increases of low marsh, followed by loss of low marsh, and eventual conversion to shallow open water by the end of the century. Dire local projections match those of the plurality of recent reports from salt marshes around the world. Proposed management strategies may only delay unfortunate outcomes rather than maintain wetlands. Concerted reductions of warming from greenhouse gases, and lower N loads seem necessary to address the coming crises in wetlands-and many other environmental threats.

Genomic analyses reveal range-wide devastation of sea otter populations

The genetic consequences of species-wide declines are rarely quantified because the timing and extent of the decline varies across the species' range. The sea otter (Enhydra lutris) is a unique model in this regard. Their dramatic decline from thousands to fewer than 100 individuals per population occurred range-wide and nearly simultaneously due to the 18th-19th century fur trade. Consequently, each sea otter population represents an independent natural experiment of recovery after extreme population decline. We designed sequence capture probes for 50 Mb of sea otter exonic and neutral genomic regions. We sequenced 107 sea otters from five populations that span the species range to high coverage (18-76×) and three historical Californian samples from ~1500 and ~200 years ago to low coverage (1.5-3.5×). We observe distinct population structure and find that sea otters in California are the last survivors of a divergent lineage isolated for thousands of years and therefore warrant special conservation concern. We detect signals of extreme population decline in every surviving sea otter population and use this demographic history to design forward-in-time simulations of coding sequence. Our simulations indicate that this decline could lower the fitness of recovering populations for generations. However, the simulations also demonstrate how historically low effective population sizes prior to the fur trade may have mitigated the effects of population decline on genetic health. Our comprehensive approach shows how demographic inference from genomic data, coupled with simulations, allows assessment of extinction risk and different models of recovery.

Archaeological and Contemporary Evidence Indicates Low Sea Otter Prevalence on the Pacific Northwest Coast During the Late Holocene

The historic extirpation and subsequent recovery of sea otters (Enhydra lutris) have profoundly changed coastal social-ecological systems across the northeastern Pacific. Today, the conservation status of sea otters is informed by estimates of population carrying capacity or growth rates independent of human impacts. However, archaeological and ethnographic evidence suggests that for millennia, complex hunting and management protocols by Indigenous communities limited sea otter abundance near human settlements to reduce the negative impacts of this keystone predator on shared shellfish prey. To assess relative sea otter prevalence in the Holocene, we compared the size structure of ancient California mussels (Mytilus californianus) from six archaeological sites in two regions on the Pacific Northwest Coast, to modern California mussels at locations with and without sea otters. We also quantified modern mussel size distributions from eight locations on the Central Coast of British Columbia, Canada, varying in sea otter occupation time. Comparisons of mussel size spectra revealed that ancient mussel size distributions are consistently more similar to modern size distributions at locations with a prolonged absence of sea otters. This indicates that late Holocene sea otters were maintained well below carrying capacity near human settlements as a result of human intervention. These findings illuminate the conditions under which sea otters and humans persisted over millennia prior to the Pacific maritime fur trade and raise important questions about contemporary conservation objectives for an iconic marine mammal and the social-ecological system in which it is embedded.

Variation in purple sea urchin (Strongylocentrotus purpuratus) morphological traits in relation to resource availability

Flexible resource investment is a risk sensitive reproductive strategy where individuals trade resources spent on reproduction for basic metabolic maintenance and survival. This study examined morphological variation in herbivorous sea urchin grazers across a mosaic landscape of macroalgae dominated habitats interspersed with patches of sea urchin barrens to determine whether sea urchins shift energy allocation in response to food limitation. Extensive underwater surveys of habitat attributes (e.g., sea urchin density, algae cover) were paired with detailed laboratory assays (e.g., sea urchin dissections) to determine how resource abundance affects energy allocation between reproductive capacity and body structure in the purple sea urchin, Strongylocentrotus purpuratus. We found that: (1) sea urchins had a more elongate jaw structure relative to body size in habitats void of macroalgae (i.e., barrens), (2) sea urchin reproductive capacity (i.e., gonad index) was lower in barrens and the barrens habitat was primarily comprised of encrusting algae, and (3) sea urchin jaw morphology (i.e., lantern index) and reproductive capacity (i.e., gonad index) were inversely related. These results suggest that sea urchins respond to macroalgae limited environments by shifting energy allocation between reproductive capacity and modifications of the foraging apparatus, which may explain the ability of sea urchins to acquire food in resource-limited environments.

Trophic downgrading reduces spatial variability on rocky reefs

Trophic downgrading in coastal waters has occurred globally during recent decades. On temperate rocky reefs, this has resulted in widespread kelp deforestation and the formation of sea urchin barrens. We hypothesize that the intact kelp forest communities are more spatially variable than the downgraded urchin barren communities, and that these differences are greatest at small spatial scales where the influence of competitive and trophic interactions is strongest. To address this, benthic community surveys were done in kelp forests and urchin barrens at nine islands spanning 1230 km of the Aleutian Archipelago where the loss of predatory sea otters has resulted in the trophic downgrading of the region’s kelp forests. We found more species and greater total spatial variation in community composition within the kelp forests than in the urchin barrens. Further, the kelp forest communities were most variable at small spatial scales (within each forest) and least variable at large spatial scales (among forests on different islands), while the urchin barren communities followed the opposite pattern. This trend was consistent for different trophic guilds (primary producers, grazers, filter feeders, predators). Together, this suggests that Aleutian kelp forests create variable habitats within their boundaries, but that the communities within these forests are generally similar across the archipelago. In contrast, urchin barrens exhibit relatively low variability within their boundaries, but these communities vary substantially among different barrens across the archipelago. We propose this represents a shift from small-scale biological control to large-scale oceanographic control of these communities.

Decadal dynamics of subtidal barrens habitat

Rocky reef barrens that are devoid of macroalgae can be created by various mechanisms, and are often maintained in the long-term by grazing urchins. The persistence of barrens varies greatly among locations, although few studies have investigated the stability of this habitat over multiple decades, particularly at large spatial scales. We used aerial images to test for differences in temporal trajectories of shallow (2-10 m) barrens at 21 sites (average size 12 ha) over 30 years across 500 km of coastline in New South Wales, Australia. Longer-term (40-68 yr) trajectories of barrens cover were documented for five of the sites and these generally reflected the 30-year patterns. Averaged across all sites, barrens area increased at a rate of 19.9 ± 8.4 m² per year per hectare of reef from 1980s-2010s. Importantly, however, 55% of sites had stable or fluctuating (±10% cover) barrens over this period, rather than displaying continual increases. Although the extent of shallow barrens increases with latitude, the temporal dynamics of barrens did not differ among three latitudinal regions where barrens are the most extensive. Associations between variability in barrens cover and environmental variables indicated that reef topography might pay a role in influencing barrens. Examples of such long-term persistence of extensive barrens are relatively rare and potential reasons for this and possible future changes are discussed.

Species recovery and recolonization of past habitats: lessons for science and conservation from sea otters in estuaries

Recovering species are often limited to much smaller areas than they historically occupied. Conservation planning for the recovering species is often based on this limited range, which may simply be an artifact of where the surviving population persisted. Southern sea otters (Enhydra lutris nereis) were hunted nearly to extinction but recovered from a small remnant population on a remote stretch of the California outer coast, where most of their recovery has occurred. However, studies of recently-recolonized estuaries have revealed that estuaries can provide southern sea otters with high quality habitats featuring shallow waters, high production and ample food, limited predators, and protected haul-out opportunities. Moreover, sea otters can have strong effects on estuarine ecosystems, fostering seagrass resilience through their consumption of invertebrate prey. Using a combination of literature reviews, population modeling, and prey surveys we explored the former estuarine habitats outside the current southern sea otter range to determine if these estuarine habitats can support healthy sea otter populations. We found the majority of studies and conservation efforts have focused on populations in exposed, rocky coastal habitats. Yet historical evidence indicates that sea otters were also formerly ubiquitous in estuaries. Our habitat-specific population growth model for California's largest estuary-San Francisco Bay-determined that it alone can support about 6,600 sea otters, more than double the 2018 California population. Prey surveys in estuaries currently with (Elkhorn Slough and Morro Bay) and without (San Francisco Bay and Drakes Estero) sea otters indicated that the availability of prey, especially crabs, is sufficient to support healthy sea otter populations. Combining historical evidence with our results, we show that conservation practitioners could consider former estuarine habitats as targets for sea otter and ecosystem restoration. This study reveals the importance of understanding how recovering species interact with all the ecosystems they historically occupied, both for improved conservation of the recovering species and for successful restoration of ecosystem functions and processes.

Aquatic Adaptation and Depleted Diversity: A Deep Dive into the Genomes of the Sea Otter and Giant Otter

Despite its recent invasion into the marine realm, the sea otter (Enhydra lutris) has evolved a suite of adaptations for life in cold coastal waters, including limb modifications and dense insulating fur. This uniquely dense coat led to the near-extinction of sea otters during the 18th-20th century fur trade and an extreme population bottleneck. We used the de novo genome of the southern sea otter (E. l. nereis) to reconstruct its evolutionary history, identify genes influencing aquatic adaptation, and detect signals of population bottlenecks. We compared the genome of the southern sea otter with the tropical freshwater-living giant otter (Pteronura brasiliensis) to assess common and divergent genomic trends between otter species, and with the closely related northern sea otter (E. l. kenyoni) to uncover population-level trends. We found signals of positive selection in genes related to aquatic adaptations, particularly limb development and polygenic selection on genes related to hair follicle development. We found extensive pseudogenization of olfactory receptor genes in both the sea otter and giant otter lineages, consistent with patterns of sensory gene loss in other aquatic mammals. At the population level, the southern sea otter and the northern sea otter showed extremely low genomic diversity, signals of recent inbreeding, and demographic histories marked by population declines. These declines may predate the fur trade and appear to have resulted in an increase in putatively deleterious variants that could impact the future recovery of the sea otter.

Marine heat wave and multiple stressors tip bull kelp forest to sea urchin barrens

Extreme climatic events have recently impacted marine ecosystems around the world, including foundation species such as corals and kelps. Here, we describe the rapid climate-driven catastrophic shift in 2014 from a previously robust kelp forest to unproductive large scale urchin barrens in northern California. Bull kelp canopy was reduced by >90% along more than 350 km of coastline. Twenty years of kelp ecosystem surveys reveal the timing and magnitude of events, including mass mortalities of sea stars (2013-), intense ocean warming (2014-2017), and sea urchin barrens (2015-). Multiple stressors led to the unprecedented and long-lasting decline of the kelp forest. Kelp deforestation triggered mass (80%) abalone mortality (2017) resulting in the closure in 2018 of the recreational abalone fishery worth an estimated $44 M and the collapse of the north coast commercial red sea urchin fishery (2015-) worth $3 M. Key questions remain such as the relative roles of ocean warming and sea star disease in the massive purple sea urchin population increase. Science and policy will need to partner to better understand drivers, build climate-resilient fisheries and kelp forest recovery strategies in order to restore essential kelp forest ecosystem services.

Post-Paleozoic Patterns in Marine Predation: Was there a Mesozoic and Cenozoic Marine Predatory Revolution?

Mesozoic and Cenozoic evolution of predators involved a series of episodes. Predators rebounded rather rapidly after the Permo-Triassic extinction and by the Middle Triassic a variety of new predator guilds had appeared, including decapod crustaceans with crushing claws, shell-crushing sharks and bony fish, as well as marine reptiles adapted for crushing, smashing, and piercing shells. While several groups (e.g., placodonts, nothosaurs) became extinct in the Late Triassic crises, others (e.g., ichthyosaurs) survived; and the Jurassic to Early Cretaceous saw the rise of malacostracan crustaceans with crushing chelae and predatory vertebrates—in particular, the marine crocodilians, ichthyosaurs, and plesiosaurs. The late Cretaceous saw unprecedented levels of diversity of marine predaceous vertebrates including pliosaurids, plesiosaurs, and mosasaurs. The great Cretaceous-Tertiary extinction decimated marine reptiles. However, most invertebrate and fish predatory groups survived; and during the Paleogene, predatory benthic invertebrates showed a spurt of evolution with neogastropods and new groups of decapods, while the teleosts and neoselachian sharks both underwent parallel rapid evolutionary radiations; these were joined by new predatory guilds of sea birds and marine mammals. Thus, although escalation is sometimes cast as an ongoing “arms race,” in actuality the predatory record shows long interludes of relative stability puncturated by episodes of abrupt biotic reorganization during and after mass extinctions. This pattern suggests episodic, but generally increasing, predation pressure on marine organisms through the Mesozoic-Cenozoic interval. However, review of the Cenozoic record of predation suggests that there are not unambiguous escalatory trends in regard to antipredatory shell architecture, such as conchiolin and spines; nor do shell drilling and shell repair data show a major increase from the Late Mesozoic through the Cenozoic. Most durophagous groups are generalists, and thus it may be that they had a diffuse effect on their invertebrate prey.

The roles and impacts of human hunter-gatherers in North Pacific marine food webs

There is a nearly 10,000-year history of human presence in the western Gulf of Alaska, but little understanding of how human foragers integrated into and impacted ecosystems through their roles as hunter-gatherers. We present two highly resolved intertidal and nearshore food webs for the Sanak Archipelago in the eastern Aleutian Islands and use them to compare trophic roles of prehistoric humans to other species. We find that the native Aleut people played distinctive roles as super-generalist and highly-omnivorous consumers closely connected to other species. Although the human population was positioned to have strong effects, arrival and presence of Aleut people in the Sanak Archipelago does not appear associated with long-term extinctions. We simulated food web dynamics to explore to what degree introducing a species with trophic roles like those of an Aleut forager, and allowing for variable strong feeding to reflect use of hunting technology, is likely to trigger extinctions. Potential extinctions decreased when an invading omnivorous super-generalist consumer focused strong feeding on decreasing fractions of its possible resources. This study presents the first assessment of the structural roles of humans as consumers within complex ecological networks, and potential impacts of those roles and feeding behavior on associated extinctions.

Sea otters, kelp forests, and the extinction of Steller's sea cow

The late Pleistocene extinction of so many large-bodied vertebrates has been variously attributed to two general causes: rapid climate change and the effects of humans as they spread from the Old World to previously uninhabited continents and islands. Many large-bodied vertebrates, especially large apex predators, maintain their associated ecosystems through top-down forcing processes, especially trophic cascades, and megaherbivores also exert an array of strong indirect effects on their communities. Thus, a third possibility for at least some of the Pleistocene extinctions is that they occurred through habitat changes resulting from the loss of these other keystone species. Here we explore the plausibility of this mechanism, using information on sea otters, kelp forests, and the recent extinction of Steller's sea cows from the Commander Islands. Large numbers of sea cows occurred in the Commander Islands at the time of their discovery by Europeans in 1741. Although extinction of these last remaining sea cows during early years of the Pacific maritime fur trade is widely thought to be a consequence of direct human overkill, we show that it is also a probable consequence of the loss of sea otters and the co-occurring loss of kelp, even if not a single sea cow had been killed directly by humans. This example supports the hypothesis that the directly caused extinctions of a few large vertebrates in the late Pleistocene may have resulted in the coextinction of numerous other species.

Indirect effects of sea otters on rockfish (Sebastes spp.) in giant kelp forests

Sea otters are a classic example of a predator controlling ecosystem productivity through cascading effects on basal, habitat-forming kelp species. However, their indirect effects on other kelp-associated taxa like fishes are poorly understood. We examined the effects of sea otter (Enhydra lutris) reintroduction along the west coast of Vancouver Island, Canada on giant kelp (Macrocystis pyrifera) distributions and the trophic niches and growth of two common kelp forest fishes, black (Sebastes melanops) and copper (S. caurinus) rockfishes. We sampled 47 kelp forests, and found that red sea urchins (Strongylocentrotus franciscanus) were eliminated in the presence of otters, and that kelp forests were 3.7 times deeper and 18.8 times larger. Despite order-of-magnitude differences in kelp forest size, adult black and copper rockfishes contained less kelp-derived carbon in their tissues (as measured by stable isotopes of C and N) in regions with otters. Adults of both species had higher mean trophic positions in the presence of otters, indicating more frequent consumption of higher trophic level prey such as fishes. Smaller trophic niche space of rockfishes in the presence of otters indicated a higher degree of trophic specialization. Juvenile black rockfishes rapidly shifted to higher kelp-carbon contents, trophic positions, and body condition factors after settling in kelp forests. The relationships of growth to length, percentage of kelp carbon, and trophic position varied between the two regions, indicating that potential effects of kelp forest size on trophic ontogeny may also affect individual performance. Our results provide evidence that the indirect effects of otters on rockfishes arise largely through the creation of habitat for fishes and other prey rather than a direct trophic connection through invertebrates or other consumers of kelp productivity.

Testing the nutritional-limitation, predator-avoidance, and storm-avoidance hypotheses for restricted sea otter habitat use in the Aleutian Islands, Alaska

Sea otters (Enhydra lutris) inhabiting the Aleutian Islands have stabilized at low abundance levels following a decline and currently exhibit restricted habitat-utilization patterns. Possible explanations for restricted habitat use by sea otters can be classified into two fundamentally different processes, bottom-up and top-down forcing. Bottom-up hypotheses argue that changes in the availability or nutritional quality of prey resources have led to the selective use of habitats that support the highest quality prey. In contrast, top-down hypotheses argue that increases in predation pressure from killer whales have led to the selective use of habitats that provide the most effective refuge from killer whale predation. A third hypothesis suggests that current restricted habitat use is based on a need for protection from storms. We tested all three hypotheses for restricted habitat use by comparing currently used and historically used sea otter foraging locations for: (1) prey availability and quality, (2) structural habitat complexity, and (3) exposure to prevailing storms. Our findings suggest that current use is based on physical habitat complexity and not on prey availability, prey quality, or protection from storms, providing further evidence for killer whale predation as a cause for restricted sea otter habitat use in the Aleutian Islands.

Improving the construction of functional models of alternative persistent states in coral reefs using insights from ongoing research programs: a discussion paper

Extensive degradation of coral reefs makes it imperative to create functional models that demonstrate ecological processes which occur in alternative states that persist over time. These models provide important information that can help in decision making regarding management measures for both the prevention of further degradation and the recovery of these ecosystems. Development of these models requires identifying and testing the ecological processes that will impose the reduction of coral cover and, preferably, identifying the disturbance that triggers this phenomenon. For this reason, research programs are a useful tool which allows a focus on the production of information for modeling. It should start with survey investigations and tests of hypotheses concerning the cause of the reduction of coral cover. Subsequently, projects should be guided by the most probable hypotheses, focusing on one guild or functional group at a time until the "trigger" process which unleashed the disturbance is identified. Even if incomplete, these models already provide information for focusing management steps.

Ancient clam gardens increased shellfish production: adaptive strategies from the past can inform food security today

Maintaining food production while sustaining productive ecosystems is among the central challenges of our time, yet, it has been for millennia. Ancient clam gardens, intertidal rock-walled terraces constructed by humans during the late Holocene, are thought to have improved the growing conditions for clams. We tested this hypothesis by comparing the beach slope, intertidal height, and biomass and density of bivalves at replicate clam garden and non-walled clam beaches in British Columbia, Canada. We also quantified the variation in growth and survival rates of littleneck clams (Leukoma staminea) we experimentally transplanted across these two beach types. We found that clam gardens had significantly shallower slopes than non-walled beaches and greater densities of L. staminea and Saxidomus giganteus, particularly at smaller size classes. Overall, clam gardens contained 4 times as many butter clams and over twice as many littleneck clams relative to non-walled beaches. As predicted, this relationship varied as a function of intertidal height, whereby clam density and biomass tended to be greater in clam gardens compared to non-walled beaches at relatively higher intertidal heights. Transplanted juvenile L. staminea grew 1.7 times faster and smaller size classes were more likely to survive in clam gardens than non-walled beaches, specifically at the top and bottom of beaches. Consequently, we provide strong evidence that ancient clam gardens likely increased clam productivity by altering the slope of soft-sediment beaches, expanding optimal intertidal clam habitat, thereby enhancing growing conditions for clams. These results reveal how ancient shellfish aquaculture practices may have supported food security strategies in the past and provide insight into tools for the conservation, management, and governance of intertidal seascapes today.

Evidence of market-driven size-selective fishing and the mediating effects of biological and institutional factors

Market demand is often ignored or assumed to lead uniformly to the decline of resources. Yet little is known about how market demand influences natural resources in particular contexts, or the mediating effects of biological or institutional factors. Here, we investigate this problem by examining the Pacific red snapper (Lutjanus peru) fishery around La Paz, Mexico, where medium or "plate-sized" fish are sold to restaurants at a premium price. If higher demand for plate-sized fish increases the relative abundance of the smallest (recruit size class) and largest (most fecund) fish, this may be a market mechanism to increase stocks and fishermen's revenues. We tested this hypothesis by estimating the effect of prices on the distribution of catch across size classes using daily records of prices and catch. We linked predictions from this economic choice model to a staged-based model of the fishery to estimate the effects on the stock and revenues from harvest. We found that the supply of plate-sized fish increased by 6%, while the supply of large fish decreased by 4% as a result of a 13% price premium for plate-sized fish. This market-driven size selection increased revenues (14%) but decreased total fish biomass (-3%). However, when market-driven size selection was combined with limited institutional constraints, both fish biomass (28%) and fishermen's revenue (22%) increased. These results show that the direction and magnitude of the effects of market demand on biological populations and human behavior can depend on both biological attributes and institutional constraints. Fisheries management may capitalize on these conditional effects by implementing size-based regulations when economic and institutional incentives will enhance compliance, as in the case we describe here, or by creating compliance enhancing conditions for existing regulations.

Sea ice microbial production supports Ross Sea benthic communities: influence of a small but stable subsidy

Diversity in guilds of primary producers enhances temporal stability in provision of organic matter to consumers. In the Antarctic ecosystem, where temporal variability in phytoplankton production is high, sea ice contains a diatom and microbial community (SIMCO) that represents a pool of organic matter that is seasonally more consistent, although of relatively small magnitude. The fate of organic material produced by SIMCO in Antarctica is largely unknown but may represent an important link between sea ice dynamics and secondary production in nearshore food webs. We used whole tissue and compound-specific stable isotope analysis of consumers to test whether the sea ice microbial community is an important source of organic matter supporting nearshore communities in the Ross Sea. We found distinct gradients in delta13C and delta15N of SIMCO corresponding to differences in inorganic carbon and nitrogen acquisition among sites with different sea ice extent and persistence. Mass balance analysis of a suite of consumers demonstrated large fluxes of SIMCO into the nearshore food web, ranging from 5% to 100% of organic matter supplied to benthic species, and 0-10% of organic matter to upper water column or pelagic inhabitants. A delta13C analysis of nine fatty acids including two key biomarkers for diatoms, eicosapentaenoic acid (EPA, 20:5omega3), and docosahexaenoic acid (DHA, 22:6omega3), confirmed these patterns. We observed clear patterns in delta13C of fatty acids that are enriched in 13C for species that acquire a large fraction of their nutrition from SIMCO. These data demonstrate the key role of SIMCO in ecosystem functioning in Antarctica and strong linkages between sea ice extent and nearshore secondary productivity. While SIMCO provides a stabilizing subsidy of organic matter, changes to sea ice coverage associated with climate change would directly affect secondary production and stability of benthic food webs in Antarctica.

Spatial dynamics of benthic competition on coral reefs

The community structure of sedentary organisms is largely controlled by the outcome of direct competition for space. Understanding factors defining competitive outcomes among neighbors is thus critical for predicting large-scale changes, such as transitions to alternate states within coral reefs. Using a spatially explicit model, we explored the importance of variation in two spatial properties in benthic dynamics on coral reefs: (1) patterns of herbivory are spatially distinct between fishes and sea urchins and (2) there is wide variation in the areal extent into which different coral species can expand. We reveal that the size-specific, competitive asymmetry of corals versus fleshy algae highlights the significance of spatial patterning of herbivory and of coral growth. Spatial dynamics that alter the demographic importance of coral recruitment and maturation have profound effects on the emergent structure of the reef benthic community. Spatially constrained herbivory (as by sea urchins) is more effective than spatially unconstrained herbivory (as by many fish) at opening space for the time needed for corals to settle and to recruit to the adult population. Further, spatially unconstrained coral growth (as by many branching coral species) reduces the number of recruitment events needed to fill a habitat with coral relative to more spatially constrained growth (as by many massive species). Our model predicts that widespread mortality of branching corals (e.g., Acropora spp) and herbivorous sea urchins (particularly Diadema antillarum) in the Caribbean has greatly reduced the potential for restoration across the region.

What happened to gray whales during the Pleistocene? The ecological impact of sea-level change on benthic feeding areas in the North Pacific Ocean

Background

Gray whales (Eschrichtius robustus) undertake long migrations, from Baja California to Alaska, to feed on seasonally productive benthos of the Bering and Chukchi seas. The invertebrates that form their primary prey are restricted to shallow water environments, but global sea-level changes during the Pleistocene eliminated or reduced this critical habitat multiple times. Because the fossil record of gray whales is coincident with the onset of Northern Hemisphere glaciation, gray whales survived these massive changes to their feeding habitat, but it is unclear how.

Methodology/Principal Findings

We reconstructed gray whale carrying capacity fluctuations during the past 120,000 years by quantifying gray whale feeding habitat availability using bathymetric data for the North Pacific Ocean, constrained by their maximum diving depth. We calculated carrying capacity based on modern estimates of metabolic demand, prey availability, and feeding duration; we also constrained our estimates to reflect current population size and account for glaciated and non-glaciated areas in the North Pacific. Our results show that key feeding areas eliminated by sea-level lowstands were not replaced by commensurate areas. Our reconstructions show that such reductions affected carrying capacity, and harmonic means of these fluctuations do not differ dramatically from genetic estimates of carrying capacity.

Conclusions/Significance

Assuming current carrying capacity estimates, Pleistocene glacial maxima may have created multiple, weak genetic bottlenecks, although the current temporal resolution of genetic datasets does not test for such signals. Our results do not, however, falsify molecular estimates of pre-whaling population size because those abundances would have been sufficient to survive the loss of major benthic feeding areas (i.e., the majority of the Bering Shelf) during glacial maxima. We propose that gray whales survived the disappearance of their primary feeding ground by employing generalist filter-feeding modes, similar to the resident gray whales found between northern Washington State and Vancouver Island.

The future of the oceans past

Major macroevolutionary events in the history of the oceans are linked to changes in oceanographic conditions and environments on regional to global scales. Even small changes in climate and productivity, such as those that occurred after the rise of the Isthmus of Panama, caused major changes in Caribbean coastal ecosystems and mass extinctions of major taxa. In contrast, massive influxes of carbon at the end of the Palaeocene caused intense global warming, ocean acidification, mass extinction throughout the deep sea and the worldwide disappearance of coral reefs. Today, overfishing, pollution and increases in greenhouse gases are causing comparably great changes to ocean environments and ecosystems. Some of these changes are potentially reversible on very short time scales, but warming and ocean acidification will intensify before they decline even with immediate reduction in emissions. There is an urgent need for immediate and decisive conservation action. Otherwise, another great mass extinction affecting all ocean ecosystems and comparable to the upheavals of the geological past appears inevitable.

Archaeology meets marine ecology: the antiquity of maritime cultures and human impacts on marine fisheries and ecosystems

Interdisciplinary study of coastal archaeological sites provides a wealth of information on the ecology and evolution of ancient marine animal populations, the structure of past marine ecosystems, and the history of human impacts on coastal fisheries. In this paper, we review recent methodological developments in the archaeology and historical ecology of coastal regions around the world. Using two case studies, we examine (a) a deep history of anthropogenic effects on the marine ecosystems of California's Channel Islands through the past 12,000 years and (b) geographic variation in the effects of human fishing on Pacific Island peoples who spread through Oceania during the late Holocene. These case studies--the first focused on hunter-gatherers, the second on maritime horticulturalists-provide evidence for shifting baselines and timelines, documenting a much deeper anthropogenic influence on many coastal ecosystems and fisheries than considered by most ecologists, conservation biologists, and fisheries managers.

Experimental confirmation of multiple community states in a marine ecosystem

Small changes in environmental conditions can unexpectedly tip an ecosystem from one community type to another, and these often irreversible shifts have been observed in semi-arid grasslands, freshwater lakes and ponds, coral reefs, and kelp forests. A commonly accepted explanation is that these ecosystems contain multiple stable points, but experimental tests confirming multiple stable states have proven elusive. Here we present a novel approach and show that mussel beds and rockweed stands are multiple stable states on intertidal shores in the Gulf of Maine, USA. Using broad-scale observational data and long-term data from experimental clearings, we show that the removal of rockweed by winter ice scour can tip persistent rockweed stands to mussel beds. The observational data were analyzed with Anderson's discriminant analysis of principal coordinates, which provided an objective function to separate mussel beds from rockweed stands. The function was then applied to 55 experimental plots, which had been established in rockweed stands in 1996. Based on 2005 data, all uncleared controls and all but one of the small clearings were classified as rockweed stands; 37% of the large clearings were classified as mussel beds. Our results address the establishment of mussels versus rockweeds and complement rather than refute the current paradigm that mussel beds and rockweed stands, once established, are maintained by site-specific differences in strong consumer control.

Fishing from past to present: continuity and resilience of red abalone fisheries on the Channel Islands, California

Archaeological data from coastal shell middens provide a window into the structure of ancient marine ecosystems and the nature of human impacts on fisheries that often span millennia. For decades Channel Island archaeologists have studied Middle Holocene shell middens visually dominated by large and often whole shells of the red abalone (Haliotis rufescens). Here we use modern ecological data, historical accounts, commercial red abalone catch records, and zooarchaeological data to examine long-term spatial and temporal variation in the productivity of red abalone fisheries on the Northern Channel Islands, California (USA). Historical patterns of abundance, in which red abalone densities increase from east to west through the islands, extend deep into the Holocene. The correlation of historical and archaeological data argue for long-term spatial continuity in productive red abalone fisheries and a resilience of abalone populations despite dramatic ecological changes and intensive human predation spanning more than 8000 years. Archaeological, historical, and ecological data suggest that California kelp forests and red abalone populations are structured by a complex combination of top-down and bottom-up controls.