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Chen S, Geng X, Lou J, Huang D, Mao H, Lin X. Overexpression of a plasmalemma Na +/H + antiporter from the halophyte Nitraria sibirica enhances the salt tolerance of transgenic poplar. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 343:112061. [PMID: 38461863 DOI: 10.1016/j.plantsci.2024.112061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 01/31/2024] [Accepted: 03/07/2024] [Indexed: 03/12/2024]
Abstract
The plasmalemma Na+/H+ antiporter Salt Overly Sensitive 1 (SOS1) is responsible for the efflux of Na+ from the cytoplasm, an important determinant of salt resistance in plants. In this study, an ortholog of SOS1, referred to as NsSOS1, was cloned from Nitraria sibirica, a typical halophyte that grows in deserts and saline-alkaline land, and its expression and function in regulating the salt tolerance of forest trees were evaluated. The expression level of NsSOS1 was higher in leaves than in roots and stems of N. sibirica, and its expression was upregulated under salt stress. Histochemical staining showed that β-glucuronidase (GUS) driven by the NsSOS1 promoter was strongly induced by abiotic stresses and phytohormones including salt, drought, low temperature, gibberellin, and methyl jasmonate, suggesting that NsSOS1 is involved in the regulation of multiple signaling pathways. Transgenic 84 K poplar (Populus alba × P. glandulosa) overexpressing NsSOS1 showed improvements in survival rate, root biomass, plant height, relative water levels, chlorophyll and proline levels, and antioxidant enzyme activities versus non-transgenic poplar (NT) under salt stress. Transgenic poplars accumulated less Na+ and more K+ in roots, stems, and leaves, which had a lower Na+/K+ ratio compared to NT under salt stress. These results indicate that NsSOS1-mediated Na+ efflux confers salt tolerance to transgenic poplars, which show more efficient photosynthesis, better scavenging of reactive oxygen species, and improved osmotic adjustment under salt stress. Transcriptome analysis of transgenic poplars confirmed that NsSOS1 not only mediates Na+ efflux but is also involved in the regulation of multiple metabolic pathways. The results provide insight into the regulatory mechanisms of NsSOS1 and suggest that it could be used to improve the salt tolerance of forest trees.
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Affiliation(s)
- Shouye Chen
- Key Laboratory of Herbage and Endemic Crop Biology of Ministry Education, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China
| | - Xin Geng
- Key Laboratory of Herbage and Endemic Crop Biology of Ministry Education, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China
| | - Jing Lou
- Key Laboratory of Herbage and Endemic Crop Biology of Ministry Education, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China
| | - Duoman Huang
- Key Laboratory of Herbage and Endemic Crop Biology of Ministry Education, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China
| | - Huiping Mao
- Key Laboratory of Herbage and Endemic Crop Biology of Ministry Education, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China; State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China.
| | - Xiaofei Lin
- Key Laboratory of Herbage and Endemic Crop Biology of Ministry Education, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China; State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, College of Life Sciences, Inner Mongolia University, Hohhot 010070, China.
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Zhang Y, Yang H, Liu Y, Hou Q, Jian S, Deng S. Molecular cloning and characterization of a salt overly sensitive3 (SOS3) gene from the halophyte Pongamia. PLANT MOLECULAR BIOLOGY 2024; 114:57. [PMID: 38743266 DOI: 10.1007/s11103-024-01459-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Accepted: 04/25/2024] [Indexed: 05/16/2024]
Abstract
A high concentration of sodium (Na+) is the primary stressor for plants in high salinity environments. The Salt Overly Sensitive (SOS) pathway is one of the best-studied signal transduction pathways, which confers plants the ability to export too much Na+ out of the cells or translocate the cytoplasmic Na+ into the vacuole. In this study, the Salt Overly Sensitive3 (MpSOS3) gene from Pongamia (Millettia pinnata Syn. Pongamia pinnata), a semi-mangrove, was isolated and characterized. The MpSOS3 protein has canonical EF-hand motifs conserved in other calcium-binding proteins and an N-myristoylation signature sequence. The MpSOS3 gene was significantly induced by salt stress, especially in Pongamia roots. Expression of the wild-type MpSOS3 but not the mutated nonmyristoylated MpSOS3-G2A could rescue the salt-hypersensitive phenotype of the Arabidopsis sos3-1 mutant, which suggested the N-myristoylation signature sequence of MpSOS3 was required for MpSOS3 function in plant salt tolerance. Heterologous expression of MpSOS3 in Arabidopsis accumulated less H2O2, superoxide anion radical (O2-), and malondialdehyde (MDA) than wild-type plants, which enhanced the salt tolerance of transgenic Arabidopsis plants. Under salt stress, MpSOS3 transgenic plants accumulated a lower content of Na+ and a higher content of K+ than wild-type plants, which maintained a better K+/Na+ ratio in transgenic plants. Moreover, no development and growth discrepancies were observed in the MpSOS3 heterologous overexpression plants compared to wild-type plants. Our results demonstrated that the MpSOS3 pathway confers a conservative salt-tolerant role and provided a foundation for further study of the SOS pathway in Pongamia.
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Affiliation(s)
- Yi Zhang
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangdong Provincial Key Laboratory of Applied Botany and Xiaoliang Research Station for Tropical Coastal Ecosystems, Chinese Academy of Sciences, Guangzhou, 510650, China
- National Engineering Research Center of Navel Orange, Gannan Normal University, Ganzhou, 341000, China
| | - Heng Yang
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangdong Provincial Key Laboratory of Applied Botany and Xiaoliang Research Station for Tropical Coastal Ecosystems, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yujuan Liu
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangdong Provincial Key Laboratory of Applied Botany and Xiaoliang Research Station for Tropical Coastal Ecosystems, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qiongzhao Hou
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangdong Provincial Key Laboratory of Applied Botany and Xiaoliang Research Station for Tropical Coastal Ecosystems, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Shuguang Jian
- CAS Engineering Laboratory for Vegetation Ecosystem Restoration on Islands and Coastal Zones & Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Shulin Deng
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangdong Provincial Key Laboratory of Applied Botany and Xiaoliang Research Station for Tropical Coastal Ecosystems, Chinese Academy of Sciences, Guangzhou, 510650, China.
- National Engineering Research Center of Navel Orange, Gannan Normal University, Ganzhou, 341000, China.
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Nørrevang AF, Shabala S, Palmgren M. A two-sequence motif-based method for the inventory of gene families in fragmented and poorly annotated genome sequences. BMC Genomics 2024; 25:26. [PMID: 38172704 PMCID: PMC10763278 DOI: 10.1186/s12864-023-09859-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Accepted: 11/29/2023] [Indexed: 01/05/2024] Open
Abstract
Databases of genome sequences are growing exponentially, but, in some cases, assembly is incomplete and genes are poorly annotated. For evolutionary studies, it is important to identify all members of a given gene family in a genome. We developed a method for identifying most, if not all, members of a gene family from raw genomes in which assembly is of low quality, using the P-type ATPase superfamily as an example. The method is based on the translation of an entire genome in all six reading frames and the co-occurrence of two family-specific sequence motifs that are in close proximity to each other. To test the method's usability, we first used it to identify P-type ATPase members in the high-quality annotated genome of barley (Hordeum vulgare). Subsequently, after successfully identifying plasma membrane H+-ATPase family members (P3A ATPases) in various plant genomes of varying quality, we tested the hypothesis that the number of P3A ATPases correlates with the ability of the plant to tolerate saline conditions. In 19 genomes of glycophytes and halophytes, the total number of P3A ATPase genes was found to vary from 7 to 22, but no significant difference was found between the two groups. The method successfully identified P-type ATPase family members in raw genomes that are poorly assembled.
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Affiliation(s)
- Anton Frisgaard Nørrevang
- NovoCrops Center, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg C, DK-1871, Denmark
| | - Sergey Shabala
- School of Biological Sciences, University of Western Australia, Crawley, WA6009, Australia
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China
| | - Michael Palmgren
- NovoCrops Center, Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg C, DK-1871, Denmark.
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Han H, Qu Y, Wang Y, Zhang Z, Geng Y, Li Y, Shao Q, Zhang H, Ma C. Transcriptome and Small RNA Sequencing Reveals the Basis of Response to Salinity, Alkalinity and Hypertonia in Quinoa ( Chenopodium quinoa Willd.). Int J Mol Sci 2023; 24:11789. [PMID: 37511549 PMCID: PMC10380837 DOI: 10.3390/ijms241411789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 07/17/2023] [Accepted: 07/20/2023] [Indexed: 07/30/2023] Open
Abstract
Quinoa (Chenopodium quinoa Willd.) is a dicotyledonous cereal that is rich in nutrients. This important crop has been shown to have significant tolerance to abiotic stresses such as salinization and drought. Understanding the underlying mechanism of stress response in quinoa would be a significant advantage for breeding crops with stress tolerance. Here, we treated the low-altitude quinoa cultivar CM499 with either NaCl (200 mM), Na2CO3/NaHCO3 (100 mM, pH 9.0) or PEG6000 (10%) to induce salinity, alkalinity and hypertonia, respectively, and analyzed the subsequent expression of genes and small RNAs via high-throughput sequencing. A list of known/novel genes were identified in quinoa, and the ones responding to different stresses were selected. The known/novel quinoa miRNAs were also identified, and the target genes of the stress response ones were predicted. Both the differently expressed genes and the targets of differently expressed miRNAs were found to be enriched for reactive oxygen species homeostasis, hormone signaling, cell wall synthesis, transcription factors and some other factors. Furthermore, we detected changes in reactive oxygen species accumulation, hormone (auxin and ethylene) responses and hemicellulose synthesis in quinoa seedlings treated with stresses, indicating their important roles in the response to saline, alkaline or hyperosmotic stresses in quinoa. Thus, our work provides useful information for understanding the mechanism of abiotic stress responses in quinoa, which would provide clues for improving breeding for quinoa and other crops.
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Affiliation(s)
- Huanan Han
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Yusen Qu
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Yingcan Wang
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Zaijie Zhang
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Yuhu Geng
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Yuanyuan Li
- CAS Center for Excellence in Molecular Plant Sciences, Fenglin Road 300, Shanghai 200032, China
| | - Qun Shao
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Hui Zhang
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
| | - Changle Ma
- College of Life Sciences, Shandong Normal University, Wenhua East Road 88, Jinan 250014, China
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Abbas G, Areej F, Asad SA, Saqib M, Anwar-ul-Haq M, Afzal S, Murtaza B, Amjad M, Naeem MA, Akram M, Akhtar N, Aftab M, Siddique KHM. Differential Effect of Heat Stress on Drought and Salt Tolerance Potential of Quinoa Genotypes: A Physiological and Biochemical Investigation. PLANTS (BASEL, SWITZERLAND) 2023; 12:774. [PMID: 36840121 PMCID: PMC9963737 DOI: 10.3390/plants12040774] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 01/26/2023] [Accepted: 01/30/2023] [Indexed: 06/18/2023]
Abstract
Soil salinity, drought, and increasing temperatures are serious environmental issues that drastically reduce crop productivity worldwide. Quinoa (Chenopodium quinoa Willd) is an important crop for food security under the changing climate. This study examined the physio-biochemical responses, plant growth, and grain yield of four quinoa genotypes (A7, Titicaca, Vikinga, and Puno) grown in pots containing normal (non-saline) or salt-affected soil exposed to drought and elevated-temperature treatments. Combinations of drought, salinity, and high-temperature stress decreased plant growth and yield more than the individual stresses. The combined drought, salinity, and heat stress treatment decreased the shoot biomass of A7, Puno, Titicaca, and Vikinga by 27, 36, 41, and 50%, respectively, compared to that of control plants. Similar trends were observed for grain yield, chlorophyll contents, and stomatal conductance. The combined application of these three stresses increased Na concentrations but decreased K concentrations in roots and shoots relative to control. Moreover, in the combined salinity, drought, and high-temperature treatment, A7, Puno, Titicaca, and Vikinga had 7.3-, 6.9-, 8-, and 12.6-fold higher hydrogen peroxide contents than control plants. All four quinoa genotypes increased antioxidant enzyme activities (CAT, SOD, and POD) to overcome oxidative stress. Despite A7 producing the highest biomass under stress, it did not translate into increased grain production. We conclude that Puno and Titicaca are more tolerant than Vikinga for cultivation in salt-affected soils prone to drought and heat stress.
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Affiliation(s)
- Ghulam Abbas
- Centre for Climate Research and Development (CCRD), COMSATS University Islamabad, Islamabad 45550, Pakistan
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Fiza Areej
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Saeed Ahmad Asad
- Department of Bio Sciences, COMSATS University Islamabad, Park Road, Islamabad 45550, Pakistan
| | - Muhammad Saqib
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad 38000, Pakistan
| | - Muhammad Anwar-ul-Haq
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad 38000, Pakistan
| | - Saira Afzal
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Behzad Murtaza
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Muhammad Amjad
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Muhammad Asif Naeem
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Muhammad Akram
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari 61100, Pakistan
| | - Naseem Akhtar
- Biochemistry Section, Ayub Agricultural Research Institute, Faisalabad 38000, Pakistan
| | - Muhammad Aftab
- Soil Chemistry Section, Institute of Soil Chemistry and Environmental Sciences, Ayub Agricultural Research Institute, Faisalabad 38000, Pakistan
| | - Kadambot H. M. Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA 6001, Australia
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Samuels ME, Lapointe C, Halwas S, Worley AC. Genomic Sequence of Canadian Chenopodium berlandieri: A North American Wild Relative of Quinoa. PLANTS (BASEL, SWITZERLAND) 2023; 12:467. [PMID: 36771551 PMCID: PMC9920564 DOI: 10.3390/plants12030467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 01/06/2023] [Accepted: 01/11/2023] [Indexed: 06/18/2023]
Abstract
Chenopodium berlandieri (pitseed goosefoot) is a widespread native North American plant, which was cultivated and consumed by indigenous peoples prior to the arrival of European colonists. Chenopodium berlandieri is closely related to, and freely hybridizes with the domesticated South American food crop C. quinoa. As such it is a potential source of wild germplasm for breeding with C. quinoa, for improved quinoa production in North America. The C. berlandieri genome sequence could also be a useful source of information for improving quinoa adaptation. To this end, we first optimized barcode markers in two chloroplast genes, rbcL and matK. Together these markers can distinguish C. berlandieri from the morphologically similar Eurasian invasive C. album (lamb's quarters). Second, we performed whole genome sequencing and preliminary assembly of a C. berlandieri accession collected in Manitoba, Canada. Our assembly, while fragmented, is consistent with the expected allotetraploid structure containing diploid Chenopodium sub-genomes A and B. The genome of our accession is highly homozygous, with only one variant site per 3-4000 bases in non-repetitive sequences. This is consistent with predominant self-fertilization. As previously reported for the genome of a partly domesticated Mexican accession of C. berlandieri, our genome assembly is similar to that of C. quinoa. Somewhat unexpectedly, the genome of our accession had almost as many variant sites when compared to the Mexican C. berlandieri, as compared to C. quinoa. Despite the overall similarity of our genome sequence to that of C. quinoa, there are differences in genes known to be involved in the domestication or genetics of other food crops. In one example, our genome assembly appears to lack one functional copy of the SOS1 (salt overly sensitive 1) gene. SOS1 is involved in soil salinity tolerance, and by extension may be relevant to the adaptation of C. berlandieri to the wet climate of the Canadian region where it was collected. Our genome assembly will be a useful tool for the improved cultivation of quinoa in North America.
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Affiliation(s)
- Mark E. Samuels
- Centre de Recherche du CHU Ste-Justine, Montréal, QC H3T 1C5, Canada
- Département de Biochimie, Université de Montréal, Montréal, QC H3T 1C5, Canada
- Département de Médecine, Université de Montréal, Montréal, QC H3T 1C5, Canada
| | - Cassandra Lapointe
- Centre de Recherche du CHU Ste-Justine, Montréal, QC H3T 1C5, Canada
- Département de Biochimie, Université de Montréal, Montréal, QC H3T 1C5, Canada
| | - Sara Halwas
- Department of Anthropology, University of Manitoba, Winnipeg, MB R3T 2M8, Canada
| | - Anne C. Worley
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB R3T 2M8, Canada
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Luo C, He B, Shi P, Xi J, Gui H, Pang B, Cheng J, Hu F, Chen X, Lv Y. Transcriptome dynamics uncovers long non-coding RNAs response to salinity stress in Chenopodium quinoa. FRONTIERS IN PLANT SCIENCE 2022; 13:988845. [PMID: 36204077 PMCID: PMC9530330 DOI: 10.3389/fpls.2022.988845] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 08/24/2022] [Indexed: 06/01/2023]
Abstract
Chenopodium quinoa is a crop with outstanding tolerance to saline soil, but long non-coding RNAs (LncRNAs) expression profile driven by salt stress in quinoa has rarely been observed yet. Based on the high-quality quinoa reference genome and high-throughput RNA sequencing (RNA-seq), genome-wide identification of LncRNAs was performed, and their dynamic response under salt stress was then investigated. In total, 153,751 high-confidence LncRNAs were discovered and dispersed intensively in chromosomes. Expression profile analysis demonstrated significant differences between LncRNAs and coding RNAs. Under salt stress conditions, 4,460 differentially expressed LncRNAs were discovered, of which only 54 were differentially expressed at all the stress time points. Besides, strongly significantly correlation was observed between salt-responsive LncRNAs and their closest neighboring genes (r = 0.346, p-value < 2.2e-16). Furthermore, a weighted co-expression network was then constructed to infer the potential biological functions of LncRNAs. Seven modules were significantly correlated with salt treatments, resulting in 210 hub genes, including 22 transcription factors and 70 LncRNAs. These results indicated that LncRNAs might interact with transcription factors to respond to salinity stress. Gene ontology enrichment of the coding genes of these modules showed that they were highly related to regulating metabolic processes, biological regulation and response to stress. This study is the genome-wide analysis of the LncRNAs responding to salt stress in quinoa. The findings will provide a solid framework for further functional research of salt responsive LncRNAs, contributing to quinoa genetic improvement.
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Affiliation(s)
- Chuping Luo
- School of Life Sciences and Food Engineering, Huaiyin Institute of Technology, Huaian, China
| | - Bing He
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Pibiao Shi
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Jinlong Xi
- Zhejiang Institute of Standardization, Hangzhou, China
| | - Hongbing Gui
- College of Animal Husbandry and Veterinary Medicine, Jiangsu Vocational College of Agriculture and Forestry, Jurong, China
| | - Bingwen Pang
- School of Life Sciences and Food Engineering, Huaiyin Institute of Technology, Huaian, China
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Junjie Cheng
- School of Life Sciences and Food Engineering, Huaiyin Institute of Technology, Huaian, China
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Fengqin Hu
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Xi Chen
- School of Agronomy and Horticulture, Jiangsu Vocational College of Agriculture and Forestry, Jurong, China
| | - Yuanda Lv
- School of Life Sciences and Food Engineering, Huaiyin Institute of Technology, Huaian, China
- Excellence and Innovation Center, Jiangsu Academy of Agricultural Sciences, Nanjing, China
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Zhang M, Cao J, Zhang T, Xu T, Yang L, Li X, Ji F, Gao Y, Ali S, Zhang Q, Zhu J, Xie L. A Putative Plasma Membrane Na +/H + Antiporter GmSOS1 Is Critical for Salt Stress Tolerance in Glycine max. FRONTIERS IN PLANT SCIENCE 2022; 13:870695. [PMID: 35651772 PMCID: PMC9149370 DOI: 10.3389/fpls.2022.870695] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 03/29/2022] [Indexed: 05/24/2023]
Abstract
Soybean (Glycine max) is a staple crop and a major source of vegetable protein and vegetable oil. The growth of soybean is dramatically inhibited by salt stress, especially by the excessive toxic Na+. Salt Overly Sensitive 1 (SOS1) is the only extensively characterized Na+ efflux transporter in multiple plant species so far. However, the role of GmSOS1 in soybean salt stress responses remains unclear. Herein, we created three gmsos1 mutants using the CRISPR-Cas9 system in soybean. We found a significant accumulation of Na+ in the roots of the gmsos1 mutants, resulting in the imbalance of Na+ and K+, which links to impaired Na+ efflux and increased K+ efflux in the roots of the gmsos1 mutants under salt stress. Compared to the wild type, our RNA-seq analysis revealed that the roots of the gmsos1-1 showed preferential up and downregulation of ion transporters under salt stress, supporting impaired stress detection or an inability to develop a comprehensive response to salinity in the gmsos1 mutants. Our findings indicate that the plasma membrane Na+/H+ exchanger GmSOS1 plays a critical role in soybean salt tolerance by maintaining Na+ homeostasis and provides evidence for molecular breeding to improve salt tolerance in soybean and other crops.
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Affiliation(s)
- Minghui Zhang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
| | - Junfeng Cao
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
| | - Tianxu Zhang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China
- College of Life Science, Northeast Forestry University, Harbin, China
| | - Tao Xu
- The Editorial Board of Journal of Forestry Research, Northeast Forestry University, Harbin, China
| | - Liyuan Yang
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
- Laboratory Department, Qitaihe Center for Disease Control and Prevention, Qitaihe, China
| | - Xiaoyuan Li
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
| | - Fengdan Ji
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
| | - Yingxue Gao
- Shanghai Center for Plant Stress Biology and Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Shahid Ali
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
- College of Life Science, Northeast Forestry University, Harbin, China
| | - Qingzhu Zhang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China
- College of Life Science, Northeast Forestry University, Harbin, China
| | - Jianhua Zhu
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, College Park, MD, United States
| | - Linan Xie
- Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin, China
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Ishikawa T, Shabala L, Zhou M, Venkataraman G, Yu M, Sellamuthu G, Chen ZH, Shabala S. Comparative Analysis of Root Na+ Relation under Salinity between Oryza sativa and Oryza coarctata. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11050656. [PMID: 35270125 PMCID: PMC8912616 DOI: 10.3390/plants11050656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Revised: 02/23/2022] [Accepted: 02/23/2022] [Indexed: 06/01/2023]
Abstract
Na+ toxicity is one of the major physiological constraints imposed by salinity on plant performance. At the same time, Na+ uptake may be beneficial under some circumstances as an easily accessible inorganic ion that can be used for increasing solute concentrations and maintaining cell turgor. Two rice species, Oryza sativa (cultivated rice, salt-sensitive) and Oryza coarctata (wild rice, salt-tolerant), demonstrated different strategies in controlling Na+ uptake. Glasshouse experiments and gene expression analysis suggested that salt-treated wild rice quickly increased xylem Na+ loading for osmotic adjustment but maintained a non-toxic level of stable shoot Na+ concentration by increased activity of a high affinity K+ transporter HKT1;5 (essential for xylem Na+ unloading) and a Na+/H+ exchanger NHX (for sequestering Na+ and K+ into root vacuoles). Cultivated rice prevented Na+ uptake and transport to the shoot at the beginning of salt treatment but failed to maintain it in the long term. While electrophysiological assays revealed greater net Na+ uptake upon salt application in cultivated rice, O. sativa plants showed much stronger activation of the root plasma membrane Na+/H+ Salt Overly Sensitive 1 (SOS1) exchanger. Thus, it appears that wild rice limits passive Na+ entry into root cells while cultivated rice relies heavily on SOS1-mediating Na+ exclusion, with major penalties imposed by the existence of the "futile cycle" at the plasma membrane.
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Affiliation(s)
- Tetsuya Ishikawa
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
| | - Lana Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
| | - Gayatri Venkataraman
- Plant Molecular Biology Laboratory, M. S. Swaminathan Research Foundation, III Cross Street, Taramani Institutional Area, Chennai 600113, India; (G.V.); (G.S.)
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| | - Gothandapani Sellamuthu
- Plant Molecular Biology Laboratory, M. S. Swaminathan Research Foundation, III Cross Street, Taramani Institutional Area, Chennai 600113, India; (G.V.); (G.S.)
- Forest Molecular Entomology Lab, Excellent Team for Mitigation (ETM), Faculty of Forestry and Wood Sciences, Czech University of Life Sciences Prague, 16500 Prague, Czech Republic
| | - Zhong-Hua Chen
- School of Science, Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia;
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, TAS 7005, Australia; (T.I.); (L.S.); (M.Z.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
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Abd El-Moneim D, ELsarag EIS, Aloufi S, El-Azraq AM, ALshamrani SM, Safhi FAA, Ibrahim AA. Quinoa ( Chenopodium quinoa Willd.): Genetic Diversity According to ISSR and SCoT Markers, Relative Gene Expression, and Morpho-Physiological Variation under Salinity Stress. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10122802. [PMID: 34961273 PMCID: PMC8707205 DOI: 10.3390/plants10122802] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 12/08/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
Quinoa (Chenopodium quinoa Willd.) is a halophytic crop that can withstand a variety of abiotic stresses, including salt. The present research examined the mechanisms of salt tolerance in five different quinoa genotypes at four different salinity levels (control (60), 80, 120, and 160 mM NaCl). ISSR and SCoT analysis revealed high polymorphism percentages of 90.91% and 85.26%, respectively. Furthermore, ISSR 1 and SCoT 7 attained the greatest number of polymorphic amplicons (27 and 26), respectively. Notably, LINE-6 and M-28 genotypes demonstrated the greatest number of unique positive and negative amplicons (50 and 42) generated from ISSR and SCoT, respectively. Protein pattern analysis detected 11 bands with a polymorphism percentage 27.27% among the quinoa genotypes, with three unique bands distinguishable for the M-28 genotype. Similarity correlation indicated that the highest similarity was between S-10 and Regeolone-3 (0.657), while the lowest similarity was between M-28 and LINE-6 (0.44). Significant variations existed among the studied salinity treatments, genotypes, and the interactions between them. The highest and lowest values for all the studied morpho-physiological and biochemical traits were recorded at 60 and 160 mM NaCl concentrations, respectively, except for the Na and proline contents, which exhibited the opposite relationship. The M-28 genotype demonstrated the highest values for all studied characteristics, while the LINE-6 genotype represented the lowest in both seasons. On the other hand, mRNA transcript levels for CqSOS1 did not exhibit differential expression in roots and leaf tissues, while the expression of CqNHX1 was upregulated more in both tissues for the M-28 genotype than for the LINE-6 genotype, and its maximum induction was seen in the leaves. Overall, the genotypes M-28 and LINE-6 were identified as the most and least salinity-tolerant, respectively.
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Affiliation(s)
- Diaa Abd El-Moneim
- Department of Plant Production (Genetic Branch), Faculty of Environmental and Agricultural Sciences, Arish University, El-Arish 45511, Egypt
| | - Eman I. S. ELsarag
- Department of Plant Production (Agronomy Branch), Faculty of Environmental and Agricultural Sciences, Arish University, El-Arish 45511, Egypt; (E.I.S.E.); (A.M.E.-A.)
| | - Salman Aloufi
- Department of Biotechnology, Faculty of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia;
| | - Asmaa M. El-Azraq
- Department of Plant Production (Agronomy Branch), Faculty of Environmental and Agricultural Sciences, Arish University, El-Arish 45511, Egypt; (E.I.S.E.); (A.M.E.-A.)
| | - Salha Mesfer ALshamrani
- Department of Biology, College of Science, University of Jeddah, Jeddah 21959, Saudi Arabia;
| | - Fatmah Ahmed Ahmed Safhi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh 11671, Saudi Arabia;
| | - Amira A. Ibrahim
- Plant Protection and Biomolecular Diagnosis Department, Arid Lands Cultivation Research Institute, City of Scientific Research and Technological Applications, New Borg El-Arab, Alexandria 21934, Egypt
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11
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Jiang W, Pan R, Buitrago S, Wu C, Abou-Elwafa SF, Xu Y, Zhang W. Conservation and divergence of the TaSOS1 gene family in salt stress response in wheat ( Triticum aestivum L.). PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2021; 27:1245-1260. [PMID: 34177146 PMCID: PMC8212347 DOI: 10.1007/s12298-021-01009-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 05/09/2021] [Accepted: 05/18/2021] [Indexed: 05/09/2023]
Abstract
UNLABELLED Salinity is one of the most important problems that adversely affect crops growth, productivity and quality worldwide. Salt Overly Sensitive 1 (SOS1) gene family plays vital roles in plant response to salt stress. Herein, we report the identification of the SOS family in wheat and the exploration of the expression profiles of SOSs under salt stress. Complete genome sequences of T. aestivum were downloaded from Ensembl plant database. Conservation and divergence of TaSOS1 family were conducted by using phylogenetic tree, gene structure and synteny distribution analysis. Expression profiles of TaSOS1s were obtained based on transcriptome and qRT-PCR analysis. Totally, 119 TaSOS1 proteins in wheat were identified at the genome-wide level and classified into three groups. Six motifs were conserved in TaSOS1 gene family. Moreover, 25 TaSOS1 genes had three copies distributing in three sub-genomes (A, B and D). A total of 32, 28 and 29 TaSOS1 genes were located on the sub-genomes A, B and D, respectively. Moreover, there were 19, 12, 6, 7, 28, 5 and 12 genes located on the three homologous of chromosomes 1, 2, 3, 4, 5, 6 and 7, respectively. Two genes were mapped to unattributed scaffolds. The duplication events analysis indicated that tandem repeats contributed to the expansion of the SOS1 family in wheat. Collinearity analysis demonstrated that segmental duplications play an important role in the expansion of SOS1 members. Chromosome 7, 5, 3, and 2 showed collinear relationship. Tissue specific expression pattern analysis revealed that 41 TaSOS1 genes expressed in various tissues, such as root, shoot, leaf, spike and grain. Transcriptomic analysis revealed that 28 and 26 genes were up- and down-regulated under salinity stress, respectively, of which 18 genes were further confirmed by RT-qPCR. The plants with high expression level of these genes displayed higher tolerance to salinity stress, stronger root system, higher Fv/Fm value and water potential. The results could be helpful for further elucidating the molecular mechanism of TaSOS1 related to salt tolerance in wheat and provide a toolkit for improving the salinity tolerance of wheat. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s12298-021-01009-y.
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Affiliation(s)
- Wei Jiang
- Hubei Collaborative Innovation Center for Grain Industry/Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Yangtze University, Jingzhou, 434025 China
| | - Rui Pan
- Hubei Collaborative Innovation Center for Grain Industry/Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Yangtze University, Jingzhou, 434025 China
| | - Sebastian Buitrago
- Hubei Collaborative Innovation Center for Grain Industry/Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Yangtze University, Jingzhou, 434025 China
| | - Chu Wu
- College of Horticulture and Gardening, Yangtze University, Jingzhou, 434025 China
| | | | - Yanhao Xu
- Hubei Collaborative Innovation Center for Grain Industry/Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Yangtze University, Jingzhou, 434025 China
| | - Wenying Zhang
- Hubei Collaborative Innovation Center for Grain Industry/Engineering Research Centre of Ecology and Agricultural Use of Wetland, Ministry of Education, Yangtze University, Jingzhou, 434025 China
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12
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Kamenya SN, Mikwa EO, Song B, Odeny DA. Genetics and breeding for climate change in Orphan crops. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:1787-1815. [PMID: 33486565 PMCID: PMC8205878 DOI: 10.1007/s00122-020-03755-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Accepted: 12/16/2020] [Indexed: 05/17/2023]
Abstract
Climate change is rapidly changing how we live, what we eat and produce, the crops we breed and the target traits. Previously underutilized orphan crops that are climate resilient are receiving much attention from the crops research community, as they are often the only crops left in the field after periods of extreme weather conditions. There are several orphan crops with incredible resilience to biotic and abiotic stresses. Some are nutritious, while others provide good sources of biofuel, medicine and other industrial raw materials. Despite these benefits, orphan crops are still lacking in important genetic and genomic resources that could be used to fast track their improvement and make their production profitable. Progress has been made in generating draft genomes of at least 28 orphan crops over the last decade, thanks to the reducing cost of sequencing. The implementation of a structured breeding program that takes advantage of additional modern crop improvement tools such as genomic selection, speed breeding, genome editing, high throughput phenotyping and breeding digitization would make rapid improvement of these orphan crops possible, but would require coordinated research investment. Other production challenges such as lack of adequate germplasm conservation, poor/non-existent seed systems and agricultural extension services, as well as poor marketing channels will also need to be improved if orphan crops were to be profitable. We review the importance of breeding orphan crops under the increasing effects of climate change, highlight existing gaps that need to be addressed and share some lessons to be learned from major crops.
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Affiliation(s)
- Sandra Ndagire Kamenya
- African Center of Excellence in Agroecology and Livelihood Systems, Uganda Martyrs University, Kampala, Uganda
| | - Erick Owuor Mikwa
- The International Crops Research Institute for the Semi-Arid Tropics - Eastern and Southern Africa, Nairobi, Kenya
| | - Bo Song
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute At Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518060, People's Republic of China.
| | - Damaris Achieng Odeny
- The International Crops Research Institute for the Semi-Arid Tropics - Eastern and Southern Africa, Nairobi, Kenya.
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Estrada Y, Fernández-Ojeda A, Morales B, Egea-Fernández JM, Flores FB, Bolarín MC, Egea I. Unraveling the Strategies Used by the Underexploited Amaranth Species to Confront Salt Stress: Similarities and Differences With Quinoa Species. FRONTIERS IN PLANT SCIENCE 2021; 12:604481. [PMID: 33643343 PMCID: PMC7902779 DOI: 10.3389/fpls.2021.604481] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Yield losses due to cultivation in saline soils is a common problem all over the world as most crop plants are glycophytes and, hence, susceptible to salt stress. The use of halophytic crops could be an interesting alternative to cope with this issue. The Amaranthaceae family comprises by far the highest proportion of salt-tolerant halophytic species. Amaranth and quinoa belong to this family, and their seeds used as pseudo-cereal grains have received much attention in recent years because of their exceptional nutritional value. While advances in the knowledge of salt tolerance mechanisms of quinoa have been remarkable in recent years, much less attention was received by amaranth, despite evidences pointing to amaranth as a promising species to be grown under salinity. In order to advance in the understanding of strategies used by amaranth to confront salt stress, we studied the comparative responses of amaranth and quinoa to salinity (100 mM NaCl) at the physiological, anatomical, and molecular levels. Amaranth was able to exhibit salt tolerance throughout its life cycle, since grain production was not affected by the saline conditions applied. The high salt tolerance of amaranth is associated with a low basal stomatal conductance due to a low number of stomata (stomatal density) and degree of stomata aperture (in adaxial surface) of leaves, which contributes to avoid leaf water loss under salt stress in a more efficient way than in quinoa. With respect to Na+ homeostasis, amaranth showed a pattern of Na+ distribution throughout the plant similar to glycophytes, with the highest accumulation found in the roots, followed by the stem and the lowest one detected in the leaves. Contrarily, quinoa exhibited a Na+ includer character with the highest accumulation detected in the shoots. Expression levels of main genes involved in Na+ homeostasis (SOS1, HKT1s, and NHX1) showed different patterns between amaranth and quinoa, with a marked higher basal expression in amaranth roots. These results highlight the important differences in the physiological and molecular responses of amaranth and quinoa when confronted with salinity.
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Affiliation(s)
- Yanira Estrada
- Department of Stress Biology and Plant Pathology, Centro de Edafologia y Biologia Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, Murcia, Spain
| | - Amanda Fernández-Ojeda
- Department of Stress Biology and Plant Pathology, Centro de Edafologia y Biologia Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, Murcia, Spain
| | - Belén Morales
- Department of Stress Biology and Plant Pathology, Centro de Edafologia y Biologia Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, Murcia, Spain
| | | | - Francisco B. Flores
- Department of Stress Biology and Plant Pathology, Centro de Edafologia y Biologia Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, Murcia, Spain
| | - María C. Bolarín
- Department of Stress Biology and Plant Pathology, Centro de Edafologia y Biologia Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, Murcia, Spain
| | - Isabel Egea
- Department of Stress Biology and Plant Pathology, Centro de Edafologia y Biologia Aplicada del Segura, Consejo Superior de Investigaciones Científicas, Campus Universitario de Espinardo, Murcia, Spain
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Comprehensive proteomic analysis revealing multifaceted regulatory network of the xero-halophyte Haloxylon salicornicum involved in salt tolerance. J Biotechnol 2020; 324:143-161. [DOI: 10.1016/j.jbiotec.2020.10.011] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 09/29/2020] [Accepted: 10/09/2020] [Indexed: 01/06/2023]
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15
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Kiani-Pouya A, Rasouli F, Shabala L, Tahir AT, Zhou M, Shabala S. Understanding the role of root-related traits in salinity tolerance of quinoa accessions with contrasting epidermal bladder cell patterning. PLANTA 2020; 251:103. [PMID: 32372252 DOI: 10.1007/s00425-020-03395-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Accepted: 04/26/2020] [Indexed: 05/02/2023]
Abstract
To compensate for the lack of capacity for external salt storage in the epidermal bladder cells, quinoa plants employ tissue-tolerance traits, to confer salinity stress tolerance. Our previous studies indicated that sequestration of toxic Na+ and Cl- ions into epidermal bladder cells (EBCs) is an efficient mechanism conferring salinity tolerance in quinoa. However, some halophytes do not develop EBCs but still possess superior salinity tolerance. To elucidate the possible compensation mechanism(s) underlying superior salinity tolerance in the absence of the external salt storage capacity, we have selected four quinoa accessions with contrasting patterns of EBC development. Whole-plant physiological and electrophysiological characteristics were assessed after 2 days and 3 weeks of 400 mM NaCl stress. Both accessions with low EBC volume utilised Na+ exclusion at the root level and could maintain low Na+ concentration in leaves to compensate for the inability to sequester Na+ load in EBC. These conclusions were further confirmed by electrophysiological experiments showing higher Na+ efflux from roots of these varieties (measured by a non-invasive microelectrode MIFE technique) as compared to accessions with high EBC volume. Furthermore, accessions with low EBC volume had significantly higher K+ concentration in their leaves upon long-term salinity exposures compared to plants with high EBC sequestration ability, suggesting that the ability to maintain high K+ content in the leaf mesophyll was as another important compensation mechanism.
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Affiliation(s)
- Ali Kiani-Pouya
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, Australia
| | - Fatemeh Rasouli
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, Australia
| | - Lana Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, Australia
| | - Ayesha T Tahir
- Department of Biosciences, COMSATS University Islamabad, Park road, Islamabad, 45550, Pakistan
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, Australia
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, College of Science and Engineering, University of Tasmania, Hobart, Australia.
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, China.
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16
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Rodríguez JP, Rahman H, Thushar S, Singh RK. Healthy and Resilient Cereals and Pseudo-Cereals for Marginal Agriculture: Molecular Advances for Improving Nutrient Bioavailability. Front Genet 2020; 11:49. [PMID: 32174958 PMCID: PMC7056906 DOI: 10.3389/fgene.2020.00049] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 01/16/2020] [Indexed: 11/13/2022] Open
Abstract
With the ever-increasing world population, an extra 1.5 billion mouths need to be fed by 2050 with continuously dwindling arable land. Hence, it is imperative that extra food come from the marginal lands that are expected to be unsuitable for growing major staple crops under the adverse climate change scenario. Crop diversity provides right alternatives for marginal environments to improve food, feed, and nutritional security. Well-adapted and climate-resilient crops will be the best fit for such a scenario to produce seed and biomass. The minor millets are known for their high nutritional profile and better resilience for several abiotic stresses that make them the suitable crops for arid and salt-affected soils and poor-quality waters. Finger millet (Eleucine coracana) and foxtail millet (Setaria italica), also considered as orphan crops, are highly tolerant grass crop species that grow well in marginal and degraded lands of Africa and Asia with better nutritional profile. Another category of grains, called pseudo-cereals, is considered as rich foods because of their protein quality and content, high mineral content, and healthy and balance food quality. Quinoa (Chenopodium quinoa), amaranth (Amaranthus sp.), and buckwheat (Fagopyrum esculentum) fall under this category. Nevertheless, both minor millets and pseudo-cereals are morphologically different, although similar for micronutrient bioavailability, and their grains are gluten-free. The cultivation of these millets can make dry lands productive and ensure future food as well as nutritional security. Although the natural nutrient profile of these crop plant species is remarkably good, little development has occurred in advances in molecular genetics and breeding efforts to improve the bioavailability of nutrients. Recent advances in NGS have enabled the genome and transcriptome sequencing of these millets and pseudo-cereals for the faster development of molecular markers and application in molecular breeding. Genomic information on finger millet (1,196 Mb with 85,243 genes); S. italica, a model small millet (well-annotated draft genome of 420 Mb with 38,801 protein-coding genes); amaranth (466 Mb genome and 23,059 protein-coding genes); buckwheat (genome size of 1.12 Gb with 35,816 annotated genes); and quinoa (genome size of 1.5 Gb containing 54,438 protein-coding genes) could pave the way for the genetic improvement of these grains. These genomic resources are an important first step toward genetic improvement of these crops. This review highlights the current advances and available resources on genomics to improve nutrient bioavailability in these five suitable crops for the sustained healthy livelihood.
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Affiliation(s)
| | | | | | - Rakesh K. Singh
- Crop Diversification and Genetics Program, International Center for Biosaline Agriculture, Dubai, United Arab Emirates
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17
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Parvez S, Abbas G, Shahid M, Amjad M, Hussain M, Asad SA, Imran M, Naeem MA. Effect of salinity on physiological, biochemical and photostabilizing attributes of two genotypes of quinoa (Chenopodium quinoa Willd.) exposed to arsenic stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 187:109814. [PMID: 31648076 DOI: 10.1016/j.ecoenv.2019.109814] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Revised: 10/09/2019] [Accepted: 10/12/2019] [Indexed: 06/10/2023]
Abstract
Soil salinity and arsenic (As) contamination are serious environmental problems. To investigate the effects of salinity on As uptake and physiological and biochemical attributes of quinoa (Chenopodiumquinoa Willd.), a hydroponic experiment was performed. One-month old healthy plants of two quinoa genotypes; Vikinga and A7 were transplanted in plastic tubs containing half strength Hoagland's nutrient solution. Plants were exposed to different levels of As (0, 150 and 300 μM), salinity (0, 150 and 300 mM) and their combinations (150 μM As + 300 mM NaCl; 300 μM As + 300 mM NaCl) for five weeks. Results revealed that combined application of salinity and As caused more pronounced reduction in growth, chlorophyll contents and caused more oxidative damage in both quinoa genotypes. Under combined application of salinity and As, Na+ concentration was increased whereas As content was decreased in plant tissues. Quinoa genotype A7 was more tolerant than Vikinga against salinity, As and their combination perhaps because of less uptake of toxic ions and higher activities of antioxidant enzymes (SOD, CAT, POD). Bioconcentration factor (BCF), translocation factor (TF) and tolerance index (TI) indicated that genotype A7 can be successfully employed for phytostabilization of As contaminated saline soils.
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Affiliation(s)
- Shumaila Parvez
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, 61100, Pakistan
| | - Ghulam Abbas
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, 61100, Pakistan.
| | - Muhammad Shahid
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, 61100, Pakistan
| | - Muhammad Amjad
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, 61100, Pakistan
| | - Munawar Hussain
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, 38000, Pakistan
| | - Saeed Ahmad Asad
- Centre for Climate Research and Development (CCRD), COMSATS University Islamabad, 45550, Pakistan
| | - Muhammad Imran
- Soil and Environmental Sciences Division, Nuclear Institute for Agriculture and Biology, Faisalabad, 38000, Pakistan
| | - Muhammad Asif Naeem
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, 61100, Pakistan
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RNA-seq Analysis of Salt-Stressed Versus Non Salt-Stressed Transcriptomes of Chenopodium quinoa Landrace R49. Genes (Basel) 2019; 10:genes10121042. [PMID: 31888133 PMCID: PMC6947843 DOI: 10.3390/genes10121042] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Revised: 11/26/2019] [Accepted: 12/07/2019] [Indexed: 12/16/2022] Open
Abstract
Quinoa (Chenopodium quinoa Willd.), a model halophytic crop species, was used to shed light on salt tolerance mechanisms at the transcriptomic level. An RNA-sequencing analysis of genotype R49 at an early vegetative stage was performed by Illumina paired-ends method comparing high salinity and control conditions in a time-course pot experiment. Genome-wide transcriptional salt-induced changes and expression profiling of relevant salt-responsive genes in plants treated or not with 300 mM NaCl were analyzed after 1 h and 5 days. We obtained up to 49 million pairs of short reads with an average length of 101 bp, identifying a total of 2416 differentially expressed genes (DEGs) based on the treatment and time of sampling. In salt-treated vs. control plants, the total number of up-regulated and down-regulated genes was 945 and 1471, respectively. The number of DEGs was higher at 5 days than at 1 h after salt treatment, as reflected in the number of transcription factors, which increased with time. We report a strong transcriptional reprogramming of genes involved in biological processes like oxidation-reduction, response to stress and response to abscisic acid (ABA), and cell wall organization. Transcript analyses by real-time RT- qPCR supported the RNA-seq results and shed light on the contribution of roots and shoots to the overall transcriptional response. In addition, it revealed a time-dependent response in the expression of the analyzed DEGs, including a quick (within 1 h) response for some genes, suggesting a "stress-anticipatory preparedness" in this highly salt-tolerant genotype.
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19
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Che B, Cheng C, Fang J, Liu Y, Jiang L, Yu B. The Recretohalophyte Tamarix TrSOS1 Gene Confers Enhanced Salt Tolerance to Transgenic Hairy Root Composite Cotton Seedlings Exhibiting Virus-Induced Gene Silencing of GhSOS1. Int J Mol Sci 2019; 20:E2930. [PMID: 31208046 PMCID: PMC6628528 DOI: 10.3390/ijms20122930] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Revised: 06/12/2019] [Accepted: 06/12/2019] [Indexed: 11/17/2022] Open
Abstract
The salt overly sensitive 1 (SOS1) gene encodes the plasma membrane Na+/H+ antiporter, SOS1, that is mainly responsible for extruding Na+ from the cytoplasm and reducing the Na+ content in plants under salt stress and is considered a vital determinant in conferring salt tolerance to the plant. However, studies on the salt tolerance function of the TrSOS1 gene of recretohalophytes, such as Tamarix, are limited. In this work, the effects of salt stress on cotton seedlings transformed with tobacco-rattle-virus-based virus-induced gene silencing (VIGS) of the endogenous GhSOS1 gene, or Agrobacterium rhizogenes strain K599-mediated TrSOS1-transgenic hairy root composite cotton plants exhibiting VIGS of GhSOS1 were first investigated. Then, with Arabidopsis thaliana AtSOS1 as a reference, differences in the complementation effect of TrSOS1 or GhSOS1 in a yeast mutant were compared under salt treatment. Results showed that compared to empty-vector-transformed plants, GhSOS1-VIGS-transformed cotton plants were more sensitive to salt stress and had reduced growth, insufficient root vigor, and increased Na+ content and Na+/K+ ratio in roots, stems, and leaves. Overexpression of TrSOS1 enhanced the salt tolerance of hairy root composite cotton seedlings exhibiting GhSOS1-VIGS by maintaining higher root vigor and leaf relative water content (RWC), and lower Na+ content and Na+/K+ ratio in roots, stems, and leaves. Transformations of TrSOS1, GhSOS1, or AtSOS1 into yeast NHA1 (Na+/H+ antiporter 1) mutant reduced cellular Na+ content and Na+/K+ ratio, increased K+ level under salt stress, and had good growth complementation in saline conditions. In particular, the ability of TrSOS1 or GhSOS1 to complement the yeast mutant was better than that of AtSOS1. This may indicate that TrSOS1 is an effective substitute and confers enhanced salt tolerance to transgenic hairy root composite cotton seedlings, and even the SOS1 gene from salt-tolerant Tamarix or cotton may have higher efficiency than salt-sensitive Arabidopsis in regulating Na+ efflux, maintaining Na+ and K+ homeostasis, and therefore contributing to stronger salt tolerance.
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Affiliation(s)
- Benning Che
- Lab of Plant Stress Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
| | - Cong Cheng
- Lab of Plant Stress Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
| | - Jiajia Fang
- Lab of Plant Stress Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
| | - Yongmei Liu
- Lab of Plant Stress Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
| | - Li Jiang
- Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumchi 830011, China.
| | - Bingjun Yu
- Lab of Plant Stress Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China.
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Abstract
The global population is on the path of an increasing trajectory with a simultaneous decline in arable land resources through salinization and desertification that have resulted mainly from climate change and other anthropogenic activities. Rising temperatures will cause changes in the entire ecosystem, resulting in significant alterations in global climate paradigms and a threat to food security. This review focuses on how the highly resilient Chenopodium quinoa Willd. can sustainably mitigate some of the detrimental impacts, such as starvation, and support or provide ecosystem services. In comparison, compared with the traditional staple food crops, quinoa has remarkable tolerance to abiotic stresses and is highly nutritious, with a unique balance and higher amounts of nutrients, and can therefore be an important crop for food security and nutritional adequacy. This crop has the potential to ameliorate global challenges with respect to increase in global population, effects of climate change, desalinization, phytoremediation, satisfying nutrient deficiency, and alleviating poverty.
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Hinojosa L, González JA, Barrios-Masias FH, Fuentes F, Murphy KM. Quinoa Abiotic Stress Responses: A Review. PLANTS (BASEL, SWITZERLAND) 2018; 7:E106. [PMID: 30501077 PMCID: PMC6313892 DOI: 10.3390/plants7040106] [Citation(s) in RCA: 86] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/04/2018] [Revised: 11/26/2018] [Accepted: 11/26/2018] [Indexed: 02/07/2023]
Abstract
Quinoa (Chenopodium quinoa Willd.) is a genetically diverse Andean crop that has earned special attention worldwide due to its nutritional and health benefits and its ability to adapt to contrasting environments, including nutrient-poor and saline soils and drought stressed marginal agroecosystems. Drought and salinity are the abiotic stresses most studied in quinoa; however, studies of other important stress factors, such as heat, cold, heavy metals, and UV-B light irradiance, are severely limited. In the last few decades, the incidence of abiotic stress has been accentuated by the increase in unpredictable weather patterns. Furthermore, stresses habitually occur as combinations of two or more. The goals of this review are to: (1) provide an in-depth description of the existing knowledge of quinoa's tolerance to different abiotic stressors; (2) summarize quinoa's physiological responses to these stressors; and (3) describe novel advances in molecular tools that can aid our understanding of the mechanisms underlying quinoa's abiotic stress tolerance.
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Affiliation(s)
- Leonardo Hinojosa
- Sustainable Seed Systems Lab, Department of Crop and Soil Sciences, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Pullman, WA 99164-6420, USA.
- Facultad de Recursos Naturales, Escuela de Agrnomía, Escuela Superior Politecnica del Chimborazo, Riobamba 060106, Ecuador.
| | - Juan A González
- Fundación Miguel Lillo, Instituto de Ecología, Miguel Lillo, San Miguel de Tucumán Post 4000, Argentina.
| | - Felipe H Barrios-Masias
- Department of Agriculture, Veterinary and Rangeland Sciences, University of Nevada-Reno, Reno, NV 89557, USA.
| | - Francisco Fuentes
- Facultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile, Vicuña Mackenna, Macul, Santiago 4860, Chile.
| | - Kevin M Murphy
- Sustainable Seed Systems Lab, Department of Crop and Soil Sciences, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Pullman, WA 99164-6420, USA.
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Zhang T, Gu M, Liu Y, Lv Y, Zhou L, Lu H, Liang S, Bao H, Zhao H. Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing. BMC Genomics 2017; 18:685. [PMID: 28870149 PMCID: PMC5584319 DOI: 10.1186/s12864-017-4093-8] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Accepted: 08/28/2017] [Indexed: 11/19/2022] Open
Abstract
Background Quinoa (Chenopodium quinoa Willd.) is a balanced nutritional crop, but its breeding improvement has been limited by the lack of information on its genetics and genomics. Therefore, it is necessary to obtain knowledge on genomic variation, population structure, and genetic diversity and to develop novel Insertion/Deletion (InDel) markers for quinoa by whole-genome re-sequencing. Results We re-sequenced 11 quinoa accessions and obtained a coverage depth between approximately 7× to 23× the quinoa genome. Based on the 1453-megabase (Mb) assembly from the reference accession Riobamba, 8,441,022 filtered bi-allelic single nucleotide polymorphisms (SNPs) and 842,783 filtered InDels were identified, with an estimated SNP and InDel density of 5.81 and 0.58 per kilobase (kb). From the genomic InDel variations, 85 dimorphic InDel markers were newly developed and validated. Together with the 62 simple sequence repeat (SSR) markers reported, a total of 147 markers were used for genotyping the 129 quinoa accessions. Molecular grouping analysis showed classification into two major groups, the Andean highland (composed of the northern and southern highland subgroups) and Chilean coastal, based on combined STRUCTURE, phylogenetic tree and PCA (Principle Component Analysis) analyses. Further analysis of the genetic diversity exhibited a decreasing tendency from the Chilean coast group to the Andean highland group, and the gene flow between subgroups was more frequent than that between the two subgroups and the Chilean coastal group. The majority of the variations (approximately 70%) were found through an analysis of molecular variation (AMOVA) due to the diversity between the groups. This was congruent with the observation of a highly significant FST value (0.705) between the groups, demonstrating significant genetic differentiation between the Andean highland type of quinoa and the Chilean coastal type. Moreover, a core set of 16 quinoa germplasms that capture all 362 alleles was selected using a simulated annealing method. Conclusions The large number of SNPs and InDels identified in this study demonstrated that the quinoa genome is enriched with genomic variations. Genetic population structure, genetic core germplasms and dimorphic InDel markers are useful resources for genetic analysis and quinoa breeding. Electronic supplementary material The online version of this article (10.1186/s12864-017-4093-8) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Tifu Zhang
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
| | - Minfeng Gu
- Xinyang Agricultural Experiment Station of Yancheng City, Yancheng, Jiangsu, 224336, China
| | - Yuhe Liu
- Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
| | - Yuanda Lv
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
| | - Ling Zhou
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
| | - Haiyan Lu
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
| | - Shuaiqiang Liang
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
| | - Huabin Bao
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China
| | - Han Zhao
- Provincial Key Laboratory of Agrobiology, Institute of Crop Germplasm and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing, Jiangsu, 210014, China.
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Wang CM, Xia ZR, Wu GQ, Yuan HJ, Wang XR, Li JH, Tian FP, Zhang Q, Zhu XQ, He JJ, Kumar T, Wang XL, Zhang JL. The coordinated regulation of Na + and K + in Hordeum brevisubulatum responding to time of salt stress. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016; 252:358-366. [PMID: 27717472 DOI: 10.1016/j.plantsci.2016.08.009] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Revised: 08/10/2016] [Accepted: 08/13/2016] [Indexed: 05/20/2023]
Abstract
Hordeum brevisubulatum, called as wild barley, is a useful monocotyledonous halophyte for soil improvement in northern China. Although previously studied, its main salt tolerance mechanism remained controversial. The current work showed that shoot Na+ concentration was increased rapidly with stress time and significantly higher than in wheat during 0-168h of 100mM NaCl treatment. Similar results were also found under 25 and 50mM NaCl treatments. Even K+ was increased from 0.01 to 50mM in the cultural solution, no significant effect was found on tissue Na+ concentrations. Interestingly, shoot growth was improved, and stronger root activity was maintained in H. brevisubulatum compared with wheat after 7days treatment of 100mM NaCl. To investigate the long-term stress impact on tissue Na+, 100mM NaCl was prolonged to 60 days. The maximum values of Na+ concentrations were observed at 7th in shoot and 14th day in roots, respectively, and then decreased gradually. Micro-electrode ion flux estimation was used and it was found that increasing Na+ efflux while maintaining K+ influx were the major strategies to reduce the Na+ concentration during long-term salt stress. Moreover, leaf Na+ secretions showed little contribution to the tissue Na+ decrease. Thereby, the physiological mechanism for H. brevisubulatum to survive from long-term salt stress was proposed that rapid Na+ accumulation occurred in the shoot to respond the initial salt shock, then Na+ efflux was triggered and K+ influx was activated to maintain a stable K+/Na+ ratio in tissues.
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Affiliation(s)
- Chun-Mei Wang
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China
| | - Zeng-Run Xia
- State Key Laboratory of Grassland Agro-ecosystem, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, People's Republic of China
| | - Guo-Qiang Wu
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou 730050, People's Republic of China
| | - Hui-Jun Yuan
- School of Life Science and Engineering, Lanzhou University of Technology, Lanzhou 730050, People's Republic of China
| | - Xin-Rui Wang
- College of Animal Science, South China Agricultural University, Guangzhou 510642, People's Republic of China
| | - Jin-Hua Li
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China
| | - Fu-Ping Tian
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China
| | - Qian Zhang
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China
| | - Xin-Qiang Zhu
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China
| | - Jiong-Jie He
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China
| | - Tanweer Kumar
- State Key Laboratory of Grassland Agro-ecosystem, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, People's Republic of China
| | - Xiao-Li Wang
- Lanzhou Institute of Husbandry and Pharmaceutical Science, Chinese Academy of Agricultural Sciences, Lanzhou 730050, People's Republic of China.
| | - Jin-Lin Zhang
- State Key Laboratory of Grassland Agro-ecosystem, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, People's Republic of China.
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Yasui Y, Hirakawa H, Oikawa T, Toyoshima M, Matsuzaki C, Ueno M, Mizuno N, Nagatoshi Y, Imamura T, Miyago M, Tanaka K, Mise K, Tanaka T, Mizukoshi H, Mori M, Fujita Y. Draft genome sequence of an inbred line of Chenopodium quinoa, an allotetraploid crop with great environmental adaptability and outstanding nutritional properties. DNA Res 2016; 23:535-546. [PMID: 27458999 PMCID: PMC5144677 DOI: 10.1093/dnares/dsw037] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2016] [Accepted: 06/22/2016] [Indexed: 11/21/2022] Open
Abstract
Chenopodium quinoa Willd. (quinoa) originated from the Andean region of South America, and is a pseudocereal crop of the Amaranthaceae family. Quinoa is emerging as an important crop with the potential to contribute to food security worldwide and is considered to be an optimal food source for astronauts, due to its outstanding nutritional profile and ability to tolerate stressful environments. Furthermore, plant pathologists use quinoa as a representative diagnostic host to identify virus species. However, molecular analysis of quinoa is limited by its genetic heterogeneity due to outcrossing and its genome complexity derived from allotetraploidy. To overcome these obstacles, we established the inbred and standard quinoa accession Kd that enables rigorous molecular analysis, and presented the draft genome sequence of Kd, using an optimized combination of high-throughput next generation sequencing on the Illumina Hiseq 2500 and PacBio RS II sequencers. The de novo genome assembly contained 25 k scaffolds consisting of 1 Gbp with N50 length of 86 kbp. Based on these data, we constructed the free-access Quinoa Genome DataBase (QGDB). Thus, these findings provide insights into the mechanisms underlying agronomically important traits of quinoa and the effect of allotetraploidy on genome evolution.
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Affiliation(s)
- Yasuo Yasui
- Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Hideki Hirakawa
- Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan
| | - Tetsuo Oikawa
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki 305-8686, Japan
| | - Masami Toyoshima
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki 305-8686, Japan
| | - Chiaki Matsuzaki
- Laboratory of Plant Gene Function, Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Nonoichi, Ishikawa 921-8836, Japan
| | - Mariko Ueno
- Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Nobuyuki Mizuno
- Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Yukari Nagatoshi
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki 305-8686, Japan
| | - Tomohiro Imamura
- Laboratory of Plant Gene Function, Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Nonoichi, Ishikawa 921-8836, Japan
| | - Manami Miyago
- Technology Development Group, Actree Co., Hakusan, Ishikawa 924-0053, Japan
| | - Kojiro Tanaka
- Technology Development Group, Actree Co., Hakusan, Ishikawa 924-0053, Japan
| | - Kazuyuki Mise
- Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Tsutomu Tanaka
- Technology Development Group, Actree Co., Hakusan, Ishikawa 924-0053, Japan
| | - Hiroharu Mizukoshi
- Technology Development Group, Actree Co., Hakusan, Ishikawa 924-0053, Japan
| | - Masashi Mori
- Laboratory of Plant Gene Function, Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Nonoichi, Ishikawa 921-8836, Japan
| | - Yasunari Fujita
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Ibaraki 305-8686, Japan
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A betaine aldehyde dehydrogenase gene in quinoa (Chenopodium quinoa): structure, phylogeny, and expression pattern. Genes Genomics 2016. [DOI: 10.1007/s13258-016-0445-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Gao J, Sun J, Cao P, Ren L, Liu C, Chen S, Chen F, Jiang J. Variation in tissue Na(+) content and the activity of SOS1 genes among two species and two related genera of Chrysanthemum. BMC PLANT BIOLOGY 2016; 16:98. [PMID: 27098270 PMCID: PMC4839091 DOI: 10.1186/s12870-016-0781-9] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Accepted: 04/13/2016] [Indexed: 05/05/2023]
Abstract
BACKGROUND Chrysanthemum, a leading ornamental species, does not tolerate salinity stress, although some of its related species do. The current level of understanding regarding the mechanisms underlying salinity tolerance in this botanical group is still limited. RESULTS A comparison of the physiological responses to salinity stress was made between Chrysanthemum morifolium 'Jinba' and its more tolerant relatives Crossostephium chinense, Artemisia japonica and Chrysanthemum crassum. The stress induced a higher accumulation of Na(+) and more reduction of K(+) in C. morifolium than in C. chinense, C. crassum and A. japonica, which also showed higher K(+)/Na(+) ratio. Homologs of an Na(+)/H(+) antiporter (SOS1) were isolated from each species. The gene carried by the tolerant plants were more strongly induced by salt stress than those carried by the non-tolerant ones. When expressed heterologously, they also conferred a greater degree of tolerance to a yeast mutant lacking Na(+)-pumping ATPase and plasma membrane Na(+)/H(+) antiporter activity. The data suggested that the products of AjSOS1, CrcSOS1 and CcSOS1 functioned more effectively as Na (+) excluders than those of CmSOS1. Over expression of four SOS1s improves the salinity tolerance of transgenic plants and the overexpressing plants of SOS1s from salt tolerant plants were more tolerant than that from salt sensitive plants. In addition, the importance of certain AjSOS1 residues for effective ion transport activity and salinity tolerance was established by site-directed mutagenesis and heterologous expression in yeast. CONCLUSIONS AjSOS1, CrcSOS1 and CcSOS1 have potential as transgenes for enhancing salinity tolerance. Some of the mutations identified here may offer opportunities to better understand the mechanistic basis of salinity tolerance in the chrysanthemum complex.
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Affiliation(s)
- Jiaojiao Gao
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Jing Sun
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Peipei Cao
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Liping Ren
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Chen Liu
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Sumei Chen
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Fadi Chen
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
| | - Jiafu Jiang
- College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China
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Solis J, Baisakh N, Brandt SR, Villordon A, La Bonte D. Transcriptome Profiling of Beach Morning Glory (Ipomoea imperati) under Salinity and Its Comparative Analysis with Sweetpotato. PLoS One 2016; 11:e0147398. [PMID: 26848754 PMCID: PMC4743971 DOI: 10.1371/journal.pone.0147398] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2015] [Accepted: 01/04/2016] [Indexed: 01/23/2023] Open
Abstract
The response and adaption to salt remains poorly understood for beach morning glory [Ipomoea imperati (Vahl) Griseb], one of a few relatives of sweetpotato, known to thrive under salty and extreme drought conditions. In order to understand the genetic mechanisms underlying salt tolerance of a Convolvulaceae member, a genome-wide transcriptome study was carried out in beach morning glory by 454 pyrosequencing. A total of 286,584 filtered reads from both salt stressed and unstressed (control) root and shoot tissues were assembled into 95,790 unigenes with an average length of 667 base pairs (bp) and N50 of 706 bp. Putative differentially expressed genes (DEGs) were identified as transcripts overrepresented under salt stressed tissues compared to the control, and were placed into metabolic pathways. Most of these DEGs were involved in stress response, membrane transport, signal transduction, transcription activity and other cellular and molecular processes. We further analyzed the gene expression of 14 candidate genes of interest for salt tolerance through quantitative reverse transcription PCR (qRT-PCR) and confirmed their differential expression under salt stress in both beach morning glory and sweetpotato. The results comparing transcripts of I. imperati against the transcriptome of other Ipomoea species, including sweetpotato are also presented in this study. In addition, 6,233 SSR markers were identified, and an in silico analysis predicted that 434 primer pairs out of 4,897 target an identifiable homologous sequence in other Ipomoea transcriptomes, including sweetpotato. The data generated in this study will help in understanding the basics of salt tolerance of beach morning glory and the SSR resources generated will be useful for comparative genomics studies and further enhance the path to the marker-assisted breeding of sweetpotato for salt tolerance.
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Affiliation(s)
- Julio Solis
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States of America
| | - Niranjan Baisakh
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States of America
- * E-mail: (NB); (DL)
| | - Steven R. Brandt
- Louisiana Digital Media Center, Louisiana State University, Baton Rouge, LA, United States of America
| | - Arthur Villordon
- Sweet Potato Research Station, Louisiana State University Agricultural Center, Chase, LA, United States of America
| | - Don La Bonte
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States of America
- * E-mail: (NB); (DL)
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Mestanza C, Riegel R, Silva H, Vásquez SC. Characterization of the acetohydroxyacid synthase multigene family in the tetraploide plant Chenopodium quinoa. ELECTRON J BIOTECHN 2015. [DOI: 10.1016/j.ejbt.2015.07.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Walsh BM, Adhikary D, Maughan PJ, Emshwiller E, Jellen EN. Chenopodium polyploidy inferences from Salt Overly Sensitive 1 (SOS1) data. AMERICAN JOURNAL OF BOTANY 2015; 102:533-43. [PMID: 25878087 DOI: 10.3732/ajb.1400344] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Accepted: 03/04/2015] [Indexed: 05/28/2023]
Abstract
PREMISE OF THE STUDY Single-copy nuclear loci can provide powerful insights into polyploid evolution. Chenopodium (Amaranthaceae) is a globally distributed genus composed of approximately 50-75 species. The genus includes several polyploid species, some of which are considered noxious agricultural weeds, and a few are domesticated crops. Very little research has addressed their evolutionary origin to date. We construct a phylogeny for Chenopodium based on two introns of the single-copy nuclear locus Salt Overly Sensitive 1 (SOS1) to clarify the relationships among the genomes of the allotetraploid and allohexaploid species, and to help identify their genome donors. METHODS Diploid species were sequenced directly, whereas homeologous sequences of polyploid genomes were first separated by plasmid-mediated cloning. Data were evaluated in maximum likelihood and Bayesian phylogenetic analyses. KEY RESULTS Homeologous sequences of polyploid species were found in four clades, which we designate as A-D. Two distinct polyploid lineages were identified: one composed of American tetraploid species with A and B class homeologs and a second composed of Eastern Hemisphere hexaploid species with B, C, and D class homeologs. CONCLUSIONS We infer that the two polyploid lineages arose independently and that each lineage may have originated only once. The American diploid, C. standleyanum, was identified as the closest living diploid relative of the A genome donor for American tetraploids, including domesticated C. quinoa, and is of potential importance for quinoa breeding. The east Asian diploid species, C. bryoniifolium, groups with American diploid species, which suggests a transoceanic dispersal.
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Affiliation(s)
- Brian M Walsh
- Department of Botany, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Dinesh Adhikary
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, Utah, USA
| | - Peter J Maughan
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, Utah, USA
| | - Eve Emshwiller
- Department of Botany, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Eric N Jellen
- Department of Plant and Wildlife Sciences, Brigham Young University, Provo, Utah, USA
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Bose J, Rodrigo-Moreno A, Lai D, Xie Y, Shen W, Shabala S. Rapid regulation of the plasma membrane H⁺-ATPase activity is essential to salinity tolerance in two halophyte species, Atriplex lentiformis and Chenopodium quinoa. ANNALS OF BOTANY 2015; 115:481-94. [PMID: 25471095 PMCID: PMC4332608 DOI: 10.1093/aob/mcu219] [Citation(s) in RCA: 97] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
BACKGROUND AND AIMS The activity of H(+)-ATPase is essential for energizing the plasma membrane. It provides the driving force for potassium retention and uptake through voltage-gated channels and for Na(+) exclusion via Na(+)/H(+) exchangers. Both of these traits are central to plant salinity tolerance; however, whether the increased activity of H(+)-ATPase is a constitutive trait in halophyte species and whether this activity is upregulated at either the transcriptional or post-translation level remain disputed. METHODS The kinetics of salt-induced net H(+), Na(+) and K(+) fluxes, membrane potential and AHA1/2/3 expression changes in the roots of two halophyte species, Atriplex lentiformis (saltbush) and Chenopodium quinoa (quinoa), were compared with data obtained from Arabidopsis thaliana roots. KEY RESULTS Intrinsic (steady-state) membrane potential values were more negative in A. lentiformis and C. quinoa compared with arabidopsis (-144 ± 3·3, -138 ± 5·4 and -128 ± 3·3 mV, respectively). Treatment with 100 mm NaCl depolarized the root plasma membrane, an effect that was much stronger in arabidopsis. The extent of plasma membrane depolarization positively correlated with NaCl-induced stimulation of vanadate-sensitive H(+) efflux, Na(+) efflux and K(+) retention in roots (quinoa > saltbush > arabidopsis). NaCl-induced stimulation of H(+) efflux was most pronounced in the root elongation zone. In contrast, H(+)-ATPase AHA transcript levels were much higher in arabidopsis compared with quinoa plants, and 100 mm NaCl treatment led to a further 3-fold increase in AHA1 and AHA2 transcripts in arabidopsis but not in quinoa. CONCLUSIONS Enhanced salinity tolerance in the halophyte species studied here is not related to the constitutively higher AHA transcript levels in the root epidermis, but to the plant's ability to rapidly upregulate plasma membrane H(+)-ATPase upon salinity treatment. This is necessary for assisting plants to maintain highly negative membrane potential values and to exclude Na(+), or enable better K(+) retention in the cytosol under saline conditions.
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Affiliation(s)
- Jayakumar Bose
- School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Ana Rodrigo-Moreno
- School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Diwen Lai
- School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Yanjie Xie
- School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Wenbiao Shen
- School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Sergey Shabala
- School of Land and Food, University of Tasmania, Hobart, TAS 7001, Australia, LINV, University of Firenze, Viale delle idee, 30, 50019 Sesto Fiorentino, Italy and College of Life Sciences, Laboratory Centre of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
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Panuccio MR, Jacobsen SE, Akhtar SS, Muscolo A. Effect of saline water on seed germination and early seedling growth of the halophyte quinoa. AOB PLANTS 2014; 6:plu047. [PMID: 25139769 PMCID: PMC4165890 DOI: 10.1093/aobpla/plu047] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Accepted: 07/16/2014] [Indexed: 05/10/2023]
Abstract
Salinization is increasing on a global scale, decreasing average yields for most major crop plants. Investigations into salt resistance have, unfortunately, mainly been focused on conventional crops, with few studies screening the potential of available halophytes as new crops. This study has been carried out to investigate the mechanisms used by quinoa, a facultative halophytic species, in order to cope with high salt levels at various stages of its development. Quinoa is regarded as one of the crops that might sustain food security in this century, grown primarily for its edible seeds with their high protein content and unique amino acid composition. Although the species has been described as a facultative halophyte, and its tolerance to salt stress has been investigated, its physiological and molecular responses to seawater (SW) and other salts have not been studied. We evaluated the effects of SW and different salts on seed germination, seedling emergence and the antioxidative pathway of quinoa. Seeds were germinated in Petri dishes and seedlings grown in pots with SW solutions (25, 50, 75 and 100 %) and NaCl, CaCl2, KCl and MgCl2 individually, at the concentrations in which they are present in SW. Our results demonstrated that all salts, at lower concentrations, increased the germination rate but not the germination percentages, compared with control (pure water). Conversely, seedlings were differently affected by treatments in respect to salt type and concentration. Growth parameters affected were root and shoot length, root morphology, fresh and dry weight, and water content. An efficient antioxidant mechanism was present in quinoa, activated by salts during germination and early seedling growth, as shown by the activities of antioxidant enzymes. Total antioxidant capacity was always higher under salt stress than in water. Moreover, osmotic and ionic stress factors had different degrees of influence on germination and development.
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Affiliation(s)
- M R Panuccio
- Department of Agriculture, Mediterranea University, località Feo di Vito, 89126 Reggio Calabria, Italy
| | - S E Jacobsen
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Højbakkegård Allé 13, DK-2630 Tåstrup, Denmark
| | - S S Akhtar
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Højbakkegård Allé 13, DK-2630 Tåstrup, Denmark Sino-Danish Center for Education and Research (SDC), Beijing, China
| | - A Muscolo
- Department of Agriculture, Mediterranea University, località Feo di Vito, 89126 Reggio Calabria, Italy
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Consolidation of the genetic and cytogenetic maps of turbot (Scophthalmus maximus) using FISH with BAC clones. Chromosoma 2014; 123:281-91. [PMID: 24473579 DOI: 10.1007/s00412-014-0452-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 01/09/2014] [Accepted: 01/10/2014] [Indexed: 10/25/2022]
Abstract
Bacterial artificial chromosomes (BAC) have been widely used for fluorescence in situ hybridization (FISH) mapping of chromosome landmarks in different organisms, including a few in teleosts. In this study, we used BAC-FISH to consolidate the previous genetic and cytogenetic maps of the turbot (Scophthalmus maximus), a commercially important pleuronectiform. The maps consisted of 24 linkage groups (LGs) but only 22 chromosomes. All turbot LGs were assigned to specific chromosomes using BAC probes obtained from a turbot 5× genomic BAC library. It consisted of 46,080 clones with inserts of at least 100 kb and <5 % empty vectors. These BAC probes contained gene-derived or anonymous markers, most of them linked to quantitative trait loci (QTL) related to productive traits. BAC clones were mapped by FISH to unique marker-specific chromosomal positions, which showed a notable concordance with previous genetic mapping data. The two metacentric pairs were cytogenetically assigned to LG2 and LG16, and the nucleolar organizer region (NOR)-bearing pair was assigned to LG15. Double-color FISH assays enabled the consolidation of the turbot genetic map into 22 linkage groups by merging LG8 with LG18 and LG21 with LG24. In this work, a first-generation probe panel of BAC clones anchored to the turbot linkage and cytogenetical map was developed. It is a useful tool for chromosome traceability in turbot, but also relevant in the context of pleuronectiform karyotypes, which often show small hardly identifiable chromosomes. This panel will also be valuable for further integrative genomics of turbot within Pleuronectiformes and teleosts, especially for fine QTL mapping for aquaculture traits, comparative genomics, and whole-genome assembly.
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Raney JA, Reynolds DJ, Elzinga DB, Page J, A. Udall J, Jellen EN, Bonfacio A, Fairbanks DJ, Maughan PJ. Transcriptome Analysis of Drought Induced Stress in <i>Chenopodium quinoa</i>. ACTA ACUST UNITED AC 2014. [DOI: 10.4236/ajps.2014.53047] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Shabala S. Learning from halophytes: physiological basis and strategies to improve abiotic stress tolerance in crops. ANNALS OF BOTANY 2013; 112:1209-21. [PMID: 24085482 PMCID: PMC3806534 DOI: 10.1093/aob/mct205] [Citation(s) in RCA: 329] [Impact Index Per Article: 29.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2013] [Accepted: 07/22/2013] [Indexed: 05/18/2023]
Abstract
BACKGROUND Global annual losses in agricultural production from salt-affected land are in excess of US$12 billion and rising. At the same time, a significant amount of arable land is becoming lost to urban sprawl, forcing agricultural production into marginal areas. Consequently, there is a need for a major breakthrough in crop breeding for salinity tolerance. Given the limited range of genetic diversity in this trait within traditional crops, stress tolerance genes and mechanisms must be identified in extremophiles and then introduced into traditional crops. SCOPE AND CONCLUSIONS This review argues that learning from halophytes may be a promising way of achieving this goal. The paper is focused around two central questions: what are the key physiological mechanisms conferring salinity tolerance in halophytes that can be introduced into non-halophyte crop species to improve their performance under saline conditions and what specific genes need to be targeted to achieve this goal? The specific traits that are discussed and advocated include: manipulation of trichome shape, size and density to enable their use for external Na(+) sequestration; increasing the efficiency of internal Na(+) sequestration in vacuoles by the orchestrated regulation of tonoplast NHX exchangers and slow and fast vacuolar channels, combined with greater cytosolic K(+) retention; controlling stomata aperture and optimizing water use efficiency by reducing stomatal density; and efficient control of xylem ion loading, enabling rapid shoot osmotic adjustment while preventing prolonged Na(+) transport to the shoot.
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Affiliation(s)
- Sergey Shabala
- School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tas 7001, Australia
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Ramezani A, Niazi A, Abolimoghadam AA, Zamani Babgohari M, Deihimi T, Ebrahimi M, Akhtardanesh H, Ebrahimie E. Quantitative expression analysis of TaSOS1 and TaSOS4 genes in cultivated and wild wheat plants under salt stress. Mol Biotechnol 2013; 53:189-97. [PMID: 22367644 DOI: 10.1007/s12033-012-9513-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Salt stress is a mixture of ionic, osmotic, and oxidative stresses. The expression of TaSOS1 (a transmembrane Na(+)/H(+) antiporter) and TaSOS4 [a cytoplasmic pyridoxal (PL) kinase] genes were measured in four different salinity levels and different time courses of salinity exposure using qRT-PCR technique. Mahuti (salt tolerant) and Alamut (salt sensitive) cultivars were used as cultivated wheat, and T. boeticum and Aegilops crassa as wild wheat plants. Salt-induced expression of TaSOS1 in these wild wheat plants indicates the presence of active TaSOS1 gene on the genomes A and D. The TaSOS1 and TaSOS4 transcript levels were found to be downregulated after salt treatment in all cultivars except in A. crassa, which was in contrast with its expression pattern in roots that was being upregulated from a very low-basal expression, after salt treatments. Duncan's Multiple Range Test showed a significant difference between expression in the 200-mM NaCl concentration with the 50 and 100 mM for the TaSOS1 gene, and no significant difference for TaSOS4. Lack of significant correlation between the TaSOS1 and TaSOS4 gene expressions confirms the theory that PLP has no significant effect on the expression of the TaSOS1 gene in wheat leaves.
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Affiliation(s)
- Amin Ramezani
- Biotechnology Institute, Shiraz University, 71441-65186 Bajgah, Shiraz, Iran.
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Pires IS, Negrão S, Pentony MM, Abreu IA, Oliveira MM, Purugganan MD. Different evolutionary histories of two cation/proton exchanger gene families in plants. BMC PLANT BIOLOGY 2013; 13:97. [PMID: 23822194 PMCID: PMC3726471 DOI: 10.1186/1471-2229-13-97] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2013] [Accepted: 06/27/2013] [Indexed: 05/22/2023]
Abstract
BACKGROUND Gene duplication events have been proposed to be involved in the adaptation of plants to stress conditions; precisely how is unclear. To address this question, we studied the evolution of two families of antiporters. Cation/proton exchangers are important for normal cell function and in plants, Na+,K+/H+ antiporters have also been implicated in salt tolerance. Two well-known plant cation/proton antiporters are NHX1 and SOS1, which perform Na+ and K+ compartmentalization into the vacuole and Na+ efflux from the cell, respectively. However, our knowledge about the evolution of NHX and SOS1 stress responsive gene families is still limited. RESULTS In this study we performed a comprehensive molecular evolutionary analysis of the NHX and SOS1 families. Using available sequences from a total of 33 plant species, we estimated gene family phylogenies and gene duplication histories, as well as examined heterogeneous selection pressure on amino acid sites. Our results show that, while the NHX family expanded and specialized, the SOS1 family remained a low copy gene family that appears to have undergone neofunctionalization during its evolutionary history. Additionally, we found that both families are under purifying selection although SOS1 is less constrained. CONCLUSIONS We propose that the different evolution histories are related with the proteins' function and localization, and that the NHX and SOS1 families are examples of two different evolutionary paths through which duplication events may result in adaptive evolution of stress tolerance.
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Affiliation(s)
- Inês S Pires
- Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal and iBET, Apartado 12 2781-901, Oeiras, Portugal
- Department of Biology and Center for Genomics and Systems Biology, New York University, New York, US
| | - Sónia Negrão
- Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal and iBET, Apartado 12 2781-901, Oeiras, Portugal
| | - Melissa M Pentony
- Department of Biology and Center for Genomics and Systems Biology, New York University, New York, US
| | - Isabel A Abreu
- Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal and iBET, Apartado 12 2781-901, Oeiras, Portugal
| | - Margarida M Oliveira
- Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal and iBET, Apartado 12 2781-901, Oeiras, Portugal
| | - Michael D Purugganan
- Department of Biology and Center for Genomics and Systems Biology, New York University, New York, US
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Shabala S, Hariadi Y, Jacobsen SE. Genotypic difference in salinity tolerance in quinoa is determined by differential control of xylem Na(+) loading and stomatal density. JOURNAL OF PLANT PHYSIOLOGY 2013; 170:906-14. [PMID: 23485259 DOI: 10.1016/j.jplph.2013.01.014] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2012] [Revised: 01/30/2013] [Accepted: 01/30/2013] [Indexed: 05/06/2023]
Abstract
Quinoa is regarded as a highly salt tolerant halophyte crop, of great potential for cultivation on saline areas around the world. Fourteen quinoa genotypes of different geographical origin, differing in salinity tolerance, were grown under greenhouse conditions. Salinity treatment started on 10 day old seedlings. Six weeks after the treatment commenced, leaf sap Na and K content and osmolality, stomatal density, chlorophyll fluorescence characteristics, and xylem sap Na and K composition were measured. Responses to salinity differed greatly among the varieties. All cultivars had substantially increased K(+) concentrations in the leaf sap, but the most tolerant cultivars had lower xylem Na(+) content at the time of sampling. Most tolerant cultivars had lowest leaf sap osmolality. All varieties reduced stomata density when grown under saline conditions. All varieties clustered into two groups (includers and excluders) depending on their strategy of handling Na(+) under saline conditions. Under control (non-saline) conditions, a strong positive correlation was observed between salinity tolerance and plants ability to accumulate Na(+) in the shoot. Increased leaf sap K(+), controlled Na(+) loading to the xylem, and reduced stomata density are important physiological traits contributing to genotypic differences in salinity tolerance in quinoa, a halophyte species from Chenopodium family.
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Affiliation(s)
- Sergey Shabala
- School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tas 7001, Australia.
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Bonales-Alatorre E, Pottosin I, Shabala L, Chen ZH, Zeng F, Jacobsen SE, Shabala S. Differential activity of plasma and vacuolar membrane transporters contributes to genotypic differences in salinity tolerance in a Halophyte Species, Chenopodium quinoa. Int J Mol Sci 2013; 14:9267-85. [PMID: 23629664 PMCID: PMC3676782 DOI: 10.3390/ijms14059267] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Revised: 04/13/2013] [Accepted: 04/15/2013] [Indexed: 11/29/2022] Open
Abstract
Halophytes species can be used as a highly convenient model system to reveal key ionic and molecular mechanisms that confer salinity tolerance in plants. Earlier, we reported that quinoa (Chenopodium quinoa Willd.), a facultative C3 halophyte species, can efficiently control the activity of slow (SV) and fast (FV) tonoplast channels to match specific growth conditions by ensuring that most of accumulated Na+ is safely locked in the vacuole (Bonales-Alatorre et al. (2013) Plant Physiology). This work extends these finding by comparing the properties of tonoplast FV and SV channels in two quinoa genotypes contrasting in their salinity tolerance. The work is complemented by studies of the kinetics of net ion fluxes across the plasma membrane of quinoa leaf mesophyll tissue. Our results suggest that multiple mechanisms contribute towards genotypic differences in salinity tolerance in quinoa. These include: (i) a higher rate of Na+ exclusion from leaf mesophyll; (ii) maintenance of low cytosolic Na+ levels; (iii) better K+ retention in the leaf mesophyll; (iv) a high rate of H+ pumping, which increases the ability of mesophyll cells to restore their membrane potential; and (v) the ability to reduce the activity of SV and FV channels under saline conditions. These mechanisms appear to be highly orchestrated, thus enabling the remarkable overall salinity tolerance of quinoa species.
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Affiliation(s)
- Edgar Bonales-Alatorre
- School of Agricultural Science and Tasmanian Institute for Agriculture, University of Tasmania, Private Bag 54, Hobart, TAS 7001, Australia; E-Mails: (E.B.-A.); (L.S.); (F.Z.)
- University Centre for Biomedical Research, University of Colima, 28045 Colima, Mexico; E-Mail:
| | - Igor Pottosin
- University Centre for Biomedical Research, University of Colima, 28045 Colima, Mexico; E-Mail:
| | - Lana Shabala
- School of Agricultural Science and Tasmanian Institute for Agriculture, University of Tasmania, Private Bag 54, Hobart, TAS 7001, Australia; E-Mails: (E.B.-A.); (L.S.); (F.Z.)
| | - Zhong-Hua Chen
- School of Science and Health, University of Western Sydney, Richmond, NSW 2753, Australia; E-Mail:
| | - Fanrong Zeng
- School of Agricultural Science and Tasmanian Institute for Agriculture, University of Tasmania, Private Bag 54, Hobart, TAS 7001, Australia; E-Mails: (E.B.-A.); (L.S.); (F.Z.)
- College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Sven-Erik Jacobsen
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Højbakkegaard Allé 13, 2630 Taastrup, Denmark; E-Mail:
| | - Sergey Shabala
- School of Agricultural Science and Tasmanian Institute for Agriculture, University of Tasmania, Private Bag 54, Hobart, TAS 7001, Australia; E-Mails: (E.B.-A.); (L.S.); (F.Z.)
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Guo Q, Wang P, Ma Q, Zhang JL, Bao AK, Wang SM. Selective transport capacity for K + over Na + is linked to the expression levels of PtSOS1 in halophyte Puccinellia tenuiflora. FUNCTIONAL PLANT BIOLOGY : FPB 2012; 39:1047-1057. [PMID: 32480854 DOI: 10.1071/fp12174] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2012] [Accepted: 08/19/2012] [Indexed: 05/23/2023]
Abstract
The plasma membrane Na+/H+ antiporter (SOS1) was shown to be a Na+ efflux protein and also involved in K+ uptake and transport. PtSOS1 was characterised from Puccinellia tenuiflora (Griseb.) Scribn. et Merr., a monocotyledonous halophyte that has a high selectivity for K+ over Na+ by roots under salt stress. To assess the contribution of PtSOS1 to the selectivity for K+ over Na+, the expression levels of PtSOS1 and Na+, K+ accumulations in P. tenuiflora exposed to different concentrations of NaCl, KCl or NaCl plus KCl were analysed. Results showed that the expression levels of PtSOS1 in roots increased significantly with the increase of external NaCl (25-150mM), accompanied by an increase of selective transport (ST) capacity for K+ over Na+ by roots. Transcription levels of PtSOS1 in roots and ST values increased under 0.1-1mM KCl, then declined sharply under 5-10mM KCl. Under 150mM NaCl, PtSOS1 expression levels in roots and ST values at 0.1mM KCl was significantly lower than that at 5mM KCl with the prolonging of treatment time. A significant positive correlation was found between root PtSOS1 expression levels and ST values under various concentrations of NaCl, KCl or 150mM NaCl plus 0.1 or 5mM KCl treatments. Therefore, it is proposed that PtSOS1 is the major component of selective transport capacity for K+ over Na+ and hence, salt tolerance of P. tenuiflora. Finally, we hypothesise a function model of SOS1 in regulating K+ and Na+ transport system in the membrane of xylem parenchyma cells by sustaining the membrane integrity; it also appears that this model could reasonably explain the phenomenon of Na+ retrieval from the xylem when plants are exposed to severe salt stress.
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Affiliation(s)
- Qiang Guo
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, PR China
| | - Pei Wang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, PR China
| | - Qing Ma
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, PR China
| | - Jin-Lin Zhang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, PR China
| | - Ai-Ke Bao
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, PR China
| | - Suo-Min Wang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, PR China
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Yadav NS, Shukla PS, Jha A, Agarwal PK, Jha B. The SbSOS1 gene from the extreme halophyte Salicornia brachiata enhances Na(+) loading in xylem and confers salt tolerance in transgenic tobacco. BMC PLANT BIOLOGY 2012; 12:188. [PMID: 23057782 PMCID: PMC3548769 DOI: 10.1186/1471-2229-12-188] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2012] [Accepted: 10/01/2012] [Indexed: 05/18/2023]
Abstract
BACKGROUND Soil salinity adversely affects plant growth and development and disturbs intracellular ion homeostasis resulting cellular toxicity. The Salt Overly Sensitive 1 (SOS1) gene encodes a plasma membrane Na(+)/H(+) antiporter that plays an important role in imparting salt stress tolerance to plants. Here, we report the cloning and characterisation of the SbSOS1 gene from Salicornia brachiata, an extreme halophyte. RESULTS The SbSOS1 gene is 3774 bp long and encodes a protein of 1159 amino acids. SbSOS1 exhibited a greater level of constitutive expression in roots than in shoots and was further increased by salt stress. Overexpressing the S. brachiata SbSOS1 gene in tobacco conferred high salt tolerance, promoted seed germination and increased root length, shoot length, leaf area, fresh weight, dry weight, relative water content (RWC), chlorophyll, K(+)/Na(+) ratio, membrane stability index, soluble sugar, proline and amino acid content relative to wild type (WT) plants. Transgenic plants exhibited reductions in electrolyte leakage, reactive oxygen species (ROS) and MDA content in response to salt stress, which probably occurred because of reduced cytosolic Na(+) content and oxidative damage. At higher salt stress, transgenic tobacco plants exhibited reduced Na(+) content in root and leaf and higher concentrations in stem and xylem sap relative to WT, which suggests a role of SbSOS1 in Na(+) loading to xylem from root and leaf tissues. Transgenic lines also showed increased K(+) and Ca(2+) content in root tissue compared to WT, which reflect that SbSOS1 indirectly affects the other transporters activity. CONCLUSIONS Overexpression of SbSOS1 in tobacco conferred a high degree of salt tolerance, enhanced plant growth and altered physiological and biochemical parameters in response to salt stress. In addition to Na(+) efflux outside the plasma membrane, SbSOS1 also helps to maintain variable Na(+) content in different organs and also affect the other transporters activity indirectly. These results broaden the role of SbSOS1 in planta and suggest that this gene could be used to develop salt-tolerant transgenic crops.
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Affiliation(s)
- Narendra Singh Yadav
- Discipline of Marine Biotechnology and Ecology, CSIR-Central Salt and Marine Chemicals Research Institute, (Council of Scientific and Industrial Research), G.B. Road, Bhavnagar, Gujarat, 364002, India
| | - Pushp Sheel Shukla
- Discipline of Marine Biotechnology and Ecology, CSIR-Central Salt and Marine Chemicals Research Institute, (Council of Scientific and Industrial Research), G.B. Road, Bhavnagar, Gujarat, 364002, India
| | - Anupama Jha
- Discipline of Marine Biotechnology and Ecology, CSIR-Central Salt and Marine Chemicals Research Institute, (Council of Scientific and Industrial Research), G.B. Road, Bhavnagar, Gujarat, 364002, India
| | - Pradeep K Agarwal
- Discipline of Marine Biotechnology and Ecology, CSIR-Central Salt and Marine Chemicals Research Institute, (Council of Scientific and Industrial Research), G.B. Road, Bhavnagar, Gujarat, 364002, India
| | - Bhavanath Jha
- Discipline of Marine Biotechnology and Ecology, CSIR-Central Salt and Marine Chemicals Research Institute, (Council of Scientific and Industrial Research), G.B. Road, Bhavnagar, Gujarat, 364002, India
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Utilization of super BAC pools and Fluidigm access array platform for high-throughput BAC clone identification: proof of concept. J Biomed Biotechnol 2012; 2012:405940. [PMID: 22910714 PMCID: PMC3403795 DOI: 10.1155/2012/405940] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2012] [Accepted: 05/20/2012] [Indexed: 11/17/2022] Open
Abstract
Bacterial artificial chromosome (BAC) libraries are critical for identifying full-length genomic sequences, correlating genetic and physical maps, and comparative genomics. Here we describe the utilization of the Fluidigm access array genotyping system in conjunction with KASPar genotyping technology to identify individual BAC clones corresponding to specific single-nucleotide polymorphisms (SNPs) from an Amplicon Express seven-plate super pooled Amaranthus hypochondriacus BAC library. Ninety-six SNP loci, spanning the length of A. hypochondriacus linkage groups 1, 2, and 15, were simultaneously tested for clone identification from four BAC super pools, corresponding to 28 384-well plates, using a single Fluidigm integrated fluidic chip (IFC). Forty-six percent of the SNPs were associated with a single unambiguous identified BAC clone. PCR amplification and next-generation sequencing of individual BAC clones confirmed the IFC clone identification. Utilization of the Fluidigm Dynamic array platform allowed for the simultaneous PCR screening of 10,752 BAC pools for 96 SNP tag sites in less than three hours at a cost of ~$0.05 per reaction.
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Kobayashi S, Abe N, Yoshida KT, Liu S, Takano T. Molecular cloning and characterization of plasma membrane- and vacuolar-type Na⁺/H⁺ antiporters of an alkaline-salt-tolerant monocot, Puccinellia tenuiflora. JOURNAL OF PLANT RESEARCH 2012; 125:587-594. [PMID: 22270695 DOI: 10.1007/s10265-012-0475-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2011] [Accepted: 12/26/2011] [Indexed: 05/27/2023]
Abstract
A better understanding of salt tolerance in plants might lead to the genetic engineering of crops that can grow in saline soils. Here we cloned and characterized plasma membrane and vacuolar Na⁺/H⁺ antiporters of a monocotyledonous alkaline-tolerant halophyte, Puccinellia tenuiflora. The predicted amino acid sequence of the transporters were very similar to those of orthologs in monocotyledonous crops. Expression analysis showed that (1) NHA was more strongly induced by NaCl in the roots of P. tenuiflora while in rice it was rather induced in the shoots, suggesting that the role of NHA in salt excretion from the roots partly accounts for the difference in the tolerance of the two species, and that (2) NHXs were specifically induced by NaHCO₃ but not by NaCl in the roots of both species, suggesting that vacuolar-type Na⁺/H⁺ antiporters play roles in pH regulation under alkaline salt conditions. Overexpression of the antiporters resulted in increased tolerance of shoots to NaCl and roots to NaHCO₃. Overexpression lines exhibited a lower Na⁺ content and a higher K⁺ content in shoots under NaCl treatments, leading to a higher Na⁺/H⁺ ratio.
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Affiliation(s)
- Shio Kobayashi
- Asian Natural Environmental Science Center-ANESC, The University of Tokyo, 1-1-1 Midori-cho, Nishitokyo, Tokyo 188-0002, Japan
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Ruiz-Carrasco K, Antognoni F, Coulibaly AK, Lizardi S, Covarrubias A, Martínez EA, Molina-Montenegro MA, Biondi S, Zurita-Silva A. Variation in salinity tolerance of four lowland genotypes of quinoa (Chenopodium quinoa Willd.) as assessed by growth, physiological traits, and sodium transporter gene expression. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2011; 49:1333-41. [PMID: 22000057 DOI: 10.1016/j.plaphy.2011.08.005] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2011] [Accepted: 08/12/2011] [Indexed: 05/18/2023]
Abstract
Chenopodium quinoa (Willd.) is an Andean plant showing a remarkable tolerance to abiotic stresses. In Chile, quinoa populations display a high degree of genetic distancing, and variable tolerance to salinity. To investigate which tolerance mechanisms might account for these differences, four genotypes from coastal central and southern regions were compared for their growth, physiological, and molecular responses to NaCl at seedling stage. Seeds were sown on agar plates supplemented with 0, 150 or 300mM NaCl. Germination was significantly reduced by NaCl only in accession BO78. Shoot length was reduced by 150mM NaCl in three out of four genotypes, and by over 60% at 300mM (except BO78 which remained more similar to controls). Root length was hardly affected or even enhanced at 150mM in all four genotypes, but inhibited, especially in BO78, by 300mM NaCl. Thus, the root/shoot ratio was differentially affected by salt, with the highest values in PRJ, and the lowest in BO78. Biomass was also less affected in PRJ than in the other accessions, the genotype with the highest increment in proline concentration upon salt treatment. Free putrescine declined dramatically in all genotypes under 300mM NaCl; however (spermidine+spermine)/putrescine ratios were higher in PRJ than BO78. Quantitative RT-PCR analyses of two sodium transporter genes, CqSOS1 and CqNHX, revealed that their expression was differentially induced at the shoot and root level, and between genotypes, by 300mM NaCl. Expression data are discussed in relation to the degree of salt tolerance in the different accessions.
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Hariadi Y, Marandon K, Tian Y, Jacobsen SE, Shabala S. Ionic and osmotic relations in quinoa (Chenopodium quinoa Willd.) plants grown at various salinity levels. JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:185-93. [PMID: 20732880 PMCID: PMC2993909 DOI: 10.1093/jxb/erq257] [Citation(s) in RCA: 118] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2010] [Revised: 07/29/2010] [Accepted: 07/29/2010] [Indexed: 05/18/2023]
Abstract
Ionic and osmotic relations in quinoa (Chenopodium quinoa Willd.) were studied by exposing plants to six salinity levels (0-500 mM NaCl range) for 70 d. Salt stress was administered either by pre-mixing of the calculated amount of NaCl with the potting mix before seeds were planted or by the gradual increase of NaCl levels in the irrigation water. For both methods, the optimal plant growth and biomass was achieved between 100 mM and 200 mM NaCl, suggesting that quinoa possess a very efficient system to adjust osmotically for abrupt increases in NaCl stress. Up to 95% of osmotic adjustment in old leaves and between 80% and 85% of osmotic adjustment in young leaves was achieved by means of accumulation of inorganic ions (Na(+), K(+), and Cl(-)) at these NaCl levels, whilst the contribution of organic osmolytes was very limited. Consistently higher K(+) and lower Na(+) levels were found in young, as compared with old leaves, for all salinity treatments. The shoot sap K(+) progressively increased with increased salinity in old leaves; this is interpreted as evidence for the important role of free K(+) in leaf osmotic adjustment under saline conditions. A 5-fold increase in salinity level (from 100 mM to 500 mM) resulted in only a 50% increase in the sap Na(+) content, suggesting either a very strict control of xylem Na(+) loading or an efficient Na(+) removal from leaves. A very strong correlation between NaCl-induced K(+) and H(+) fluxes was observed in quinoa root, suggesting that a rapid NaCl-induced activation of H(+)-ATPase is needed to restore otherwise depolarized membrane potential and prevent further K(+) leak from the cytosol. Taken together, this work emphasizes the role of inorganic ions for osmotic adjustment in halophytes and calls for more in-depth studies of the mechanisms of vacuolar Na(+) sequestration, control of Na(+) and K(+) xylem loading, and their transport to the shoot.
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Affiliation(s)
- Yuda Hariadi
- School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tas 7001, Australia
- Department of Physics, Faculty of Mathematics and Natural Sciences, University of Jember, Jember 68121, East Java, Indonesia
| | - Karl Marandon
- Institute Polytechnique LaSalle Beauvais, BP 30313-60026 Beauvais Cedex, France
| | - Yu Tian
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, 130024, China
| | - Sven-Erik Jacobsen
- Department of Agriculture and Ecology, Faculty of Life Sciences, University of Copenhagen, Højbakkegaard Alle 13, DK-2630 Taastrup, Denmark
| | - Sergey Shabala
- School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tas 7001, Australia
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