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Takken W, Charlwood D, Lindsay SW. The behaviour of adult Anopheles gambiae, sub-Saharan Africa's principal malaria vector, and its relevance to malaria control: a review. Malar J 2024; 23:161. [PMID: 38783348 PMCID: PMC11112813 DOI: 10.1186/s12936-024-04982-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 05/11/2024] [Indexed: 05/25/2024] Open
Abstract
BACKGROUND Mosquitoes of the Anopheles gambiae complex are one of the major vectors of malaria in sub-Saharan Africa. Their ability to transmit this disease of major public health importance is dependent on their abundance, biting behaviour, susceptibility and their ability to survive long enough to transmit malaria parasites. A deeper understanding of this behaviour can be exploited for improving vector surveillance and malaria control. FINDINGS Adult mosquitoes emerge from aquatic habitats at dusk. After a 24 h teneral period, in which the cuticle hardens and the adult matures, they may disperse at random and search upwind for a mate or to feed. Mating generally takes place at dusk in swarms that form over species-specific 'markers'. Well-nourished females may mate before blood-feeding, but the reverse is true for poorly-nourished insects. Females are monogamous and only mate once whilst males, that only feed on nectar, swarm nightly and can potentially mate up to four times. Females are able to locate hosts by following their carbon dioxide and odour gradients. When in close proximity to the host, visual cues, temperature and relative humidity are also used. Most blood-feeding occurs at night, indoors, with mosquitoes entering houses mainly through gaps between the roof and the walls. With the exception of the first feed, females are gonotrophically concordant and a blood meal gives rise to a complete egg batch. Egg development takes two or three days depending on temperature. Gravid females leave their resting sites at dusk. They are attracted by water gradients and volatile chemicals that provide a suitable aquatic habitat in which to lay their eggs. CONCLUSION Whilst traditional interventions, using insecticides, target mosquitoes indoors, additional protection can be achieved using spatial repellents outdoors, attractant traps or house modifications to prevent mosquito entry. Future research on the variability of species-specific behaviour, movement of mosquitoes across the landscape, the importance of light and vision, reproductive barriers to gene flow, male mosquito behaviour and evolutionary changes in mosquito behaviour could lead to an improvement in malaria surveillance and better methods of control reducing the current over-reliance on the indoor application of insecticides.
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Affiliation(s)
- Willem Takken
- Laboratory of Entomology, Wageningen University & Research, PO Box 16, 6700 AA, Wageningen, The Netherlands.
| | - Derek Charlwood
- Global Health and Tropical Medicine, Instituto de Hygiene e Medicina Tropical, Lisbon, Portugal
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Daron J, Bouafou L, Tennessen JA, Rahola N, Makanga B, Akone-Ella O, Ngangue MF, Longo Pendy NM, Paupy C, Neafsey DE, Fontaine MC, Ayala D. Genomic Signatures of Microgeographic Adaptation in Anopheles coluzzii Along an Anthropogenic Gradient in Gabon. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.16.594472. [PMID: 38798379 PMCID: PMC11118577 DOI: 10.1101/2024.05.16.594472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Species distributed across heterogeneous environments often evolve locally adapted populations, but understanding how these persist in the presence of homogenizing gene flow remains puzzling. In Gabon, Anopheles coluzzii, a major African malaria mosquito is found along an ecological gradient, including a sylvatic population, away of any human presence. This study identifies into the genomic signatures of local adaptation in populations from distinct environments including the urban area of Libreville, and two proximate sites 10km apart in the La Lopé National Park (LLP), a village and its sylvatic neighborhood. Whole genome re-sequencing of 96 mosquitoes unveiled ∼ 5.7millions high-quality single nucleotide polymorphisms. Coalescent-based demographic analyses suggest an ∼ 8,000-year-old divergence between Libreville and La Lopé populations, followed by a secondary contact ( ∼ 4,000 ybp) resulting in asymmetric effective gene flow. The urban population displayed reduced effective size, evidence of inbreeding, and strong selection pressures for adaptation to urban settings, as suggested by the hard selective sweeps associated with genes involved in detoxification and insecticide resistance. In contrast, the two geographically proximate LLP populations showed larger effective sizes, and distinctive genomic differences in selective signals, notably soft-selective sweeps on the standing genetic variation. Although neutral loci and chromosomal inversions failed to discriminate between LLP populations, our findings support that microgeographic adaptation can swiftly emerge through selection on standing genetic variation despite high gene flow. This study contributes to the growing understanding of evolution of populations in heterogeneous environments amid ongoing gene flow and how major malaria mosquitoes adapt to human. Significance Anopheles coluzzii , a major African malaria vector, thrives from humid rainforests to dry savannahs and coastal areas. This ecological success is linked to its close association with domestic settings, with human playing significant roles in driving the recent urban evolution of this mosquito. Our research explores the assumption that these mosquitoes are strictly dependent on human habitats, by conducting whole-genome sequencing on An. coluzzii specimens from urban, rural, and sylvatic sites in Gabon. We found that urban mosquitoes show de novo genetic signatures of human-driven vector control, while rural and sylvatic mosquitoes exhibit distinctive genetic evidence of local adaptations derived from standing genetic variation. Understanding adaptation mechanisms of this mosquito is therefore crucial to predict evolution of vector control strategies.
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Houldcroft CJ, Underdown S. Infectious disease in the Pleistocene: Old friends or old foes? AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2023; 182:513-531. [PMID: 38006200 DOI: 10.1002/ajpa.24737] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Revised: 03/01/2023] [Accepted: 03/14/2023] [Indexed: 11/26/2023]
Abstract
The impact of endemic and epidemic disease on humans has traditionally been seen as a comparatively recent historical phenomenon associated with the Neolithisation of human groups, an increase in population size led by sedentarism, and increasing contact with domesticated animals as well as species occupying opportunistic symbiotic and ectosymbiotic relationships with humans. The orthodox approach is that Neolithisation created the conditions for increasing population size able to support a reservoir of infectious disease sufficient to act as selective pressure. This orthodoxy is the result of an overly simplistic reliance on skeletal data assuming that no skeletal lesions equated to a healthy individual, underpinned by the assumption that hunter-gatherer groups were inherently healthy while agricultural groups acted as infectious disease reservoirs. The work of van Blerkom, Am. J. Phys. Anthropol., vol. suppl 37 (2003), Wolfe et al., Nature, vol. 447 (2007) and Houldcroft and Underdown, Am. J. Phys. Anthropol., vol. 160, (2016) has changed this landscape by arguing that humans and pathogens have long been fellow travelers. The package of infectious diseases experienced by our ancient ancestors may not be as dissimilar to modern infectious diseases as was once believed. The importance of DNA, from ancient and modern sources, to the study of the antiquity of infectious disease, and its role as a selective pressure cannot be overstated. Here we consider evidence of ancient epidemic and endemic infectious diseases with inferences from modern and ancient human and hominin DNA, and from circulating and extinct pathogen genomes. We argue that the pandemics of the past are a vital tool to unlock the weapons needed to fight pandemics of the future.
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Affiliation(s)
| | - Simon Underdown
- Human Origins and Palaeoenvironmental Research Group, School of Social Sciences, Oxford Brookes University, Oxford, UK
- Center for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
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Mwima R, Hui TYJ, Nanteza A, Burt A, Kayondo JK. Potential persistence mechanisms of the major Anopheles gambiae species complex malaria vectors in sub-Saharan Africa: a narrative review. Malar J 2023; 22:336. [PMID: 37936194 PMCID: PMC10631165 DOI: 10.1186/s12936-023-04775-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 10/30/2023] [Indexed: 11/09/2023] Open
Abstract
The source of malaria vector populations that re-establish at the beginning of the rainy season is still unclear yet knowledge of mosquito behaviour is required to effectively institute control measures. Alternative hypotheses like aestivation, local refugia, migration between neighbouring sites, and long-distance migration (LDM) are stipulated to support mosquito persistence. This work assessed the malaria vector persistence dynamics and examined various studies done on vector survival via these hypotheses; aestivation, local refugia, local or long-distance migration across sub-Saharan Africa, explored a range of methods used, ecological parameters and highlighted the knowledge trends and gaps. The results about a particular persistence mechanism that supports the re-establishment of Anopheles gambiae, Anopheles coluzzii or Anopheles arabiensis in sub-Saharan Africa were not conclusive given that each method used had its limitations. For example, the Mark-Release-Recapture (MRR) method whose challenge is a low recapture rate that affects its accuracy, and the use of time series analysis through field collections whose challenge is the uncertainty about whether not finding mosquitoes during the dry season is a weakness of the conventional sampling methods used or because of hidden shelters. This, therefore, calls for further investigations emphasizing the use of ecological experiments under controlled conditions in the laboratory or semi-field, and genetic approaches, as they are known to complement each other. This review, therefore, unveils and assesses the uncertainties that influence the different malaria vector persistence mechanisms and provides recommendations for future studies.
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Affiliation(s)
- Rita Mwima
- Department of Entomology, Uganda Virus Research Institute (UVRI), Entebbe, Uganda
- Department of Biotechnical and Diagnostic Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB), Makerere University, Kampala, Uganda
| | - Tin-Yu J Hui
- Silwood Park Campus, Department of Life Sciences, Imperial College London, Ascot, UK
| | - Ann Nanteza
- Department of Biotechnical and Diagnostic Sciences, College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB), Makerere University, Kampala, Uganda
| | - Austin Burt
- Silwood Park Campus, Department of Life Sciences, Imperial College London, Ascot, UK
| | - Jonathan K Kayondo
- Department of Entomology, Uganda Virus Research Institute (UVRI), Entebbe, Uganda.
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Kormos A, Dimopoulos G, Bier E, Lanzaro GC, Marshall JM, James AA. Conceptual risk assessment of mosquito population modification gene-drive systems to control malaria transmission: preliminary hazards list workshops. Front Bioeng Biotechnol 2023; 11:1261123. [PMID: 37965050 PMCID: PMC10641379 DOI: 10.3389/fbioe.2023.1261123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 10/09/2023] [Indexed: 11/16/2023] Open
Abstract
The field-testing and eventual adoption of genetically-engineered mosquitoes (GEMs) to control vector-borne pathogen transmission will require them meeting safety criteria specified by regulatory authorities in regions where the technology is being considered for use and other locales that might be impacted. Preliminary risk considerations by researchers and developers may be useful for planning the baseline data collection and field research used to address the anticipated safety concerns. Part of this process is to identify potential hazards (defined as the inherent ability of an entity to cause harm) and their harms, and then chart the pathways to harm and evaluate their probability as part of a risk assessment. The University of California Malaria Initiative (UCMI) participated in a series of workshops held to identify potential hazards specific to mosquito population modification strains carrying gene-drive systems coupled to anti-parasite effector genes and their use in a hypothetical island field trial. The hazards identified were placed within the broader context of previous efforts discussed in the scientific literature. Five risk areas were considered i) pathogens, infections and diseases, and the impacts of GEMs on human and animal health, ii) invasiveness and persistence of GEMs, and interactions of GEMs with target organisms, iii) interactions of GEMs with non-target organisms including horizontal gene transfer, iv) impacts of techniques used for the management of GEMs and v) evolutionary and stability considerations. A preliminary hazards list (PHL) was developed and is made available here. This PHL is useful for internal project risk evaluation and is available to regulators at prospective field sites. UCMI project scientists affirm that the subsequent processes associated with the comprehensive risk assessment for the application of this technology should be driven by the stakeholders at the proposed field site and areas that could be affected by this intervention strategy.
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Affiliation(s)
- Ana Kormos
- Vector Genetics Laboratory, University of California, Davis, Davis, CA, United States
| | - George Dimopoulos
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Bloomberg School of Public Health, Malaria Research Institute, Johns Hopkins University, Baltimore, MD, United States
| | - Ethan Bier
- Department of Cell and Developmental Biology, University of California, San Diego, San Diego, CA, United States
| | - Gregory C. Lanzaro
- Vector Genetics Laboratory, University of California, Davis, Davis, CA, United States
| | - John M. Marshall
- Divisions of Epidemiology and Biostatistics, School of Public Health, University of California, Berkeley, Berkeley, CA, United States
| | - Anthony A. James
- Departments of Microbiology and Molecular Genetics and Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA, United States
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Maasayi MS, Machange JJ, Kamande DS, Kibondo UA, Odufuwa OG, Moore SJ, Tambwe MM. The MTego trap: a potential tool for monitoring malaria and arbovirus vectors. Parasit Vectors 2023; 16:212. [PMID: 37370169 DOI: 10.1186/s13071-023-05835-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Accepted: 06/12/2023] [Indexed: 06/29/2023] Open
Abstract
BACKGROUND Odour-baited traps are useful for vector surveillance and control. However, most existing traps have shown inconsistent recapture rates across different mosquito species, necessitating the need for more effective and efficient traps. The MTego trap with integrated thermal stimuli has been developed as an alternative trap. This study was undertaken to determine and compare the efficacy of the MTego trap to that of the Biogents (BG) modular BG-Pro (BGP) trap for sampling different mosquito species in a semi-field system. METHODS Fully balanced Latin square design experiments (no-choice and dual choice) were conducted in semi-field chambers using laboratory-reared female Anopheles gambiae sensu stricto, Anopheles funestus, Anopheles arabiensis, Culex quinquefasciatus and Aedes aegypti. There were 16 replicates, and 50 mosquitoes of each species were released in each chamber per replicate. The evaluated traps were as follows: the MTego trap baited with PM6 (MT-PM6), the MTego trap baited with BG-Lure (BGL) (MT-BGL), and the BGP trap baited with BG-Lure (BGP-BGL). RESULTS In the no-choice test, the MT-BGL and BGP-BGL traps captured a similar proportion of An. gambiae (31% vs 29%, P-value = 0.519) and An. funestus (32% vs 33%, P = 0.520). The MT-PM6 and BGP-BGL traps showed no significant difference in capturing Ae. aegypti (33% vs 31%, P = 0.324). However, the BGP-BGL caught more An. arabiensis and Cx. quinquefasciatus mosquitoes than the other traps (P < 0.0001). In the dual-choice test of MT-PM6 vs BGP-BGL, similar proportions of An. funestus (25% vs 27%, P = 0.473) and Ae. aegypti (29% vs 25%, P = 0.264) were captured in the traps, while the BGP-BGL captured more An. gambiae, An. arabiensis and Cx. quinquefasciatus mosquitoes than the MT-PM6 (P < 0.0001). CONCLUSIONS This study demonstrated that the MTego trap has potential as a tool that can be used interchangeably with the BGP trap for sampling anthropophilic mosquitoes including African malaria vectors An. gambiae and An. funestus and the principal arbovirus vector Ae. aegypti.
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Affiliation(s)
- Masudi Suleiman Maasayi
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania.
- School of Life Sciences and Bioengineering, The Nelson Mandela African Institution of Science and Technology (NM-AIST), P.O. Box 447, Arusha, Tanzania.
| | - Jane Johnson Machange
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania
- School of Life Sciences and Bioengineering, The Nelson Mandela African Institution of Science and Technology (NM-AIST), P.O. Box 447, Arusha, Tanzania
| | - Dismas S Kamande
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania
- School of Life Sciences and Bioengineering, The Nelson Mandela African Institution of Science and Technology (NM-AIST), P.O. Box 447, Arusha, Tanzania
| | - Ummi Abdul Kibondo
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania
| | - Olukayode G Odufuwa
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania
- London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK
- Vector Biology Unit, Epidemiology and Public Health Department, Swiss Tropical and Public Health Institute, Kreuzstrasse 2, Allschwil, 4123, Basel, Switzerland
- University of Basel, Petersplatz 1, 4001, Basel, Switzerland
| | - Sarah Jane Moore
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania
- School of Life Sciences and Bioengineering, The Nelson Mandela African Institution of Science and Technology (NM-AIST), P.O. Box 447, Arusha, Tanzania
- Vector Biology Unit, Epidemiology and Public Health Department, Swiss Tropical and Public Health Institute, Kreuzstrasse 2, Allschwil, 4123, Basel, Switzerland
- University of Basel, Petersplatz 1, 4001, Basel, Switzerland
| | - Mgeni Mohamed Tambwe
- Vector Control Product Testing Unit, Environmental Health and Ecological Science Department, Ifakara Health Institute, P.O. Box 74, Bagamoyo, Tanzania
- Vector Biology Unit, Epidemiology and Public Health Department, Swiss Tropical and Public Health Institute, Kreuzstrasse 2, Allschwil, 4123, Basel, Switzerland
- University of Basel, Petersplatz 1, 4001, Basel, Switzerland
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Boddé M, Makunin A, Ayala D, Bouafou L, Diabaté A, Ekpo UF, Kientega M, Le Goff G, Makanga BK, Ngangue MF, Omitola OO, Rahola N, Tripet F, Durbin R, Lawniczak MKN. High-resolution species assignment of Anopheles mosquitoes using k-mer distances on targeted sequences. eLife 2022; 11:e78775. [PMID: 36222650 PMCID: PMC9648975 DOI: 10.7554/elife.78775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 10/11/2022] [Indexed: 11/13/2022] Open
Abstract
The ANOSPP amplicon panel is a genus-wide targeted sequencing panel to facilitate large-scale monitoring of Anopheles species diversity. Combining information from the 62 nuclear amplicons present in the ANOSPP panel allows for a more senstive and specific species assignment than single gene (e.g. COI) barcoding, which is desirable in the light of permeable species boundaries. Here, we present NNoVAE, a method using Nearest Neighbours (NN) and Variational Autoencoders (VAE), which we apply to k-mers resulting from the ANOSPP amplicon sequences in order to hierarchically assign species identity. The NN step assigns a sample to a species-group by comparing the k-mers arising from each haplotype's amplicon sequence to a reference database. The VAE step is required to distinguish between closely related species, and also has sufficient resolution to reveal population structure within species. In tests on independent samples with over 80% amplicon coverage, NNoVAE correctly classifies to species level 98% of samples within the An. gambiae complex and 89% of samples outside the complex. We apply NNoVAE to over two thousand new samples from Burkina Faso and Gabon, identifying unexpected species in Gabon. NNoVAE presents an approach that may be of value to other targeted sequencing panels, and is a method that will be used to survey Anopheles species diversity and Plasmodium transmission patterns through space and time on a large scale, with plans to analyse half a million mosquitoes in the next five years.
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Affiliation(s)
- Marilou Boddé
- Department of Genetics, University of CambridgeCambridgeUnited Kingdom
- Wellcome Sanger InstituteHinxtonUnited Kingdom
| | | | - Diego Ayala
- Institut de Recherche pour le Développement, MIVEGEC, Univ. Montpellier, CNRS, IRDMontpellier,France
| | - Lemonde Bouafou
- Institut de Recherche pour le Développement, MIVEGEC, Univ. Montpellier, CNRS, IRDMontpellier,France
| | - Abdoulaye Diabaté
- Institut de Recherche en Sciences de la Santé, Direction Régionale de l'OuestBobo-DioulassoBurkina Faso
| | | | - Mahamadi Kientega
- Institut de Recherche en Sciences de la Santé, Direction Régionale de l'OuestBobo-DioulassoBurkina Faso
| | - Gilbert Le Goff
- Institut de Recherche pour le Développement, MIVEGEC, Univ. Montpellier, CNRS, IRDMontpellier,France
| | | | - Marc F Ngangue
- Centre International de Recherches Medicales de FrancevilleFrancevilleGabon
| | | | - Nil Rahola
- Institut de Recherche pour le Développement, MIVEGEC, Univ. Montpellier, CNRS, IRDMontpellier,France
| | - Frederic Tripet
- Centre for Applied Entomology and Parasitology, Keele UniversityNewcastleUnited Kingdom
| | - Richard Durbin
- Department of Genetics, University of CambridgeCambridgeUnited Kingdom
- Wellcome Sanger InstituteHinxtonUnited Kingdom
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Comparisons of chemosensory gene repertoires in human and non-human feeding Anopheles mosquitoes link olfactory genes to anthropophily. iScience 2022; 25:104521. [PMID: 35754720 PMCID: PMC9213756 DOI: 10.1016/j.isci.2022.104521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 05/08/2022] [Accepted: 05/30/2022] [Indexed: 11/06/2022] Open
Abstract
We investigate the genetic basis of anthropophily (human host use) in a non-model mosquito species group, the Anopheles farauti complex from the southwest Pacific. This complex has experienced multiple transitions from anthropophily to zoophily, contrasting with well-studied systems (the global species Aedes aegypti and the African Anopheles gambiae complex) that have evolved to be specialist anthropophiles. By performing tests of selection and assessing evolutionary patterns for >200 olfactory genes from nine genomes, we identify several candidate genes associated with differences in anthropophily in this complex. Based on evolutionary patterns (phylogenetic relationships, fixed amino acid differences, and structural differences) as well as results from selection analyses, we identify numerous genes that are likely to play an important role in mosquitoes’ ability to detect humans as hosts. Our findings contribute to the understanding of the evolution of insect olfactory gene families and mosquito host preference as well as having potential applied outcomes. Genomes of Anopheles mosquitoes with differing host preferences were sequenced Evolutionary comparisons were performed on >200 insect chemosensory genes These comparisons revealed candidate genes involved in human feeding Two of the main candidates identified were co-receptor Ir8a and Or75
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Knaden M, Anderson P, Andersson MN, Hill SR, Sachse S, Sandgren M, Stensmyr MC, Löfstedt C, Ignell R, Hansson BS. Human Impacts on Insect Chemical Communication in the Anthropocene. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.791345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The planet is presently undergoing dramatic changes caused by human activities. We are living in the era of the Anthropocene, where our activities directly affect all living organisms on Earth. Insects constitute a major part of the world’s biodiversity and currently, we see dwindling insect biomass but also outbreaks of certain populations. Most insects rely on chemical communication to locate food, mates, and suitable oviposition sites, but also to avoid enemies and detrimental microbes. Emissions of, e.g., CO2, NOx, and ozone can all affect the chemical communication channel, as can a rising temperature. Here, we present a review of the present state of the art in the context of anthropogenic impact on insect chemical communication. We concentrate on present knowledge regarding fruit flies, mosquitoes, moths, and bark beetles, as well as presenting our views on future developments and needs in this emerging field of research. We include insights from chemical, physiological, ethological, and ecological directions and we briefly present a new international research project, the Max Planck Centre for Next Generation Insect Chemical Ecology (nGICE), launched to further increase our understanding of the impact of human activities on insect olfaction and chemical communication.
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Caputo B, Tondossoma N, Virgillito C, Pichler V, Serini P, Calzetta M, Manica M, Coulibaly ZI, Dia I, Akré M, Offianan A, Della Torre A. Is Côte D'Ivoire a new high hybridization zone for the two major malaria vectors, Anopheles coluzzii and An. gambiae (Diptera, Culicidae)? INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2022; 98:105215. [PMID: 35063691 DOI: 10.1016/j.meegid.2022.105215] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 01/10/2022] [Accepted: 01/12/2022] [Indexed: 06/14/2023]
Abstract
Anopheles gambiae and An. coluzzii are very closely related and recently differentiated species representing the main malaria vectors in the Afrotropical region and responsible of up to >3 infective bites/person/night in Côte D'Ivoire, where prevention and control has stagnated in recent years. The aim of the present study was to genetically and ecologically characterize An. gambiae and An. coluzzii populations from two villages of Côte D'Ivoire, lying in the coastal forest belt and 250 km inland in the Guinean savannah mosaic belt, respectively. Results reveal high frequencies of both species in both study sites and high frequencies of hybrids (4-33%) along the whole year of sampling. Consistently with observations for the well-known high hybridization zone at the far-west of the species range, hybrid frequencies were higher in the coastal village and highest when the two species occurred at more balanced frequencies, supporting the "frequency-dependent hybridization" ecological speciation theory. Pilot genotyping revealed signatures of genomic admixture in both chromosome-X and -3. Coupled with previous reports of hybrids in the region, the results point to the coastal region of Côte D'Ivoire as a possible regions of high hybridization. Preliminary characterization of parameters relevant for malaria transmission and control (e.g. possibly higher sporozoite rates and indoor biting preferences in hybrids than in the parental species) highlight the possible relevance of the breakdown of reproductive barriers between An. gambiae and An. coluzzii not only in the field of ecological evolution, but also in malaria epidemiology and control.
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Affiliation(s)
- Beniamino Caputo
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza", Piazzale Aldo Moro, 5, 00185 Rome, Italy.
| | - Naminata Tondossoma
- Unité de Paludologie, Institut Pasteur de Côte D'Ivoire, Abidjan, Côte D'Ivoire; Institut Pierre Richet/Institut National de Santé Publique, Bouaké, Côte D'Ivoire
| | - Chiara Virgillito
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza", Piazzale Aldo Moro, 5, 00185 Rome, Italy; Unité de Paludologie, Institut Pasteur de Côte D'Ivoire, Abidjan, Côte D'Ivoire; Institut Pierre Richet/Institut National de Santé Publique, Bouaké, Côte D'Ivoire; Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, TN, Italy
| | - Verena Pichler
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza", Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Paola Serini
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza", Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Maria Calzetta
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza", Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Mattia Manica
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, TN, Italy; Center for Health Emergencies, Bruno Kessler Foundation, Trento, Italy
| | | | - Ibrahima Dia
- Unité d'entomologie médicale, Institut Pasteur de Dakar, 36 Avenue Pasteur, Dakar, BP 220, Senegal
| | - Maurice Akré
- Institut Pierre Richet/Institut National de Santé Publique, Bouaké, Côte D'Ivoire
| | - Andre Offianan
- Unité de Paludologie, Institut Pasteur de Côte D'Ivoire, Abidjan, Côte D'Ivoire
| | - Alessandra Della Torre
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza", Piazzale Aldo Moro, 5, 00185 Rome, Italy
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11
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Coetzee BWT, Gaston KJ, Koekemoer LL, Kruger T, Riddin MA, Smit IPJ. Artificial Light as a Modulator of Mosquito-Borne Disease Risk. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2021.768090] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Light is a fundamental cue regulating a host of biological responses. The artificial modification thereof demonstrably impacts a wide range of organisms. The use of artificial light is changing in type, extent and intensity. Insect vector-borne diseases remain a global scourge, but surprisingly few studies have directly investigated the interactions between artificial light and disease vectors, such as mosquitoes. Here we briefly overview the progress to date, which highlights that artificial light must be considered as a modulator of mosquito-borne disease risk. We discuss where the mechanisms may lie, and where future research could usefully be directed, particularly in advancing understanding of the biological effects of the light environment. Further understanding of how artificial light may modulate mosquito-borne disease risk may assist in employing and redesigning light regimes that do not increase, and may even mitigate, already significant disease burdens, especially in the developing world.
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12
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Review of Anopheles Mosquito Species, Abundance, and Distribution in Ethiopia. J Trop Med 2021; 2021:6726622. [PMID: 34603455 PMCID: PMC8486561 DOI: 10.1155/2021/6726622] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 09/03/2021] [Indexed: 11/17/2022] Open
Abstract
Background Malaria is a major mosquito-borne disease in Ethiopia, and it is one of the leading causes of morbidity and mortality. Plasmodium falciparum and P. vivax are the two malaria-causing parasitic species commonly known to cause human malaria in Ethiopia. To better manage and control vectors transmitting malaria parasites, the abundance, distribution, and updated annotated list of Anopheles species present in Ethiopia are very important. Methods In order to compile a list of the species recorded in Ethiopia, 33 original research articles were collected. This work gives an updated list of Anopheles mosquito species in Ethiopia and their abundance, distribution, and composition. Results According to this review, 110305 Anopheles mosquitoes were collected and 35 Anopheles species were recorded in different parts of Ethiopia. A. arabiensis was the most abundant when compared to other species, whereas A. maculipalpis and A. wilsonii were the least abundant species. The most abundant Anopheles species was recorded in central and the least abundant, from eastern Ethiopia. The second, third, and fourth abundant species were also collected from southern, northern, and western parts of Ethiopia.
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13
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Jayaswal V, Ndo C, Ma HC, Clifton BD, Pombi M, Cabrera K, Couhet A, Mouline K, Diabaté A, Dabiré R, Ayala D, Ranz JM. Intraspecific Transcriptome Variation and Sex-Biased Expression in Anopheles arabiensis. Genome Biol Evol 2021; 13:6357708. [PMID: 34432020 PMCID: PMC8449828 DOI: 10.1093/gbe/evab199] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/22/2021] [Indexed: 01/17/2023] Open
Abstract
The magnitude and functional patterns of intraspecific transcriptional variation in the anophelines, including those of sex-biased genes underlying sex-specific traits relevant for malaria transmission, remain understudied. As a result, how changes in expression levels drive adaptation in these species is poorly understood. We sequenced the female, male, and larval transcriptomes of three populations of Anopheles arabiensis from Burkina Faso. One-third of the genes were differentially expressed between populations, often involving insecticide resistance-related genes in a sample type-specific manner, and with the females showing the largest number of differentially expressed genes. At the genomic level, the X chromosome appears depleted of differentially expressed genes compared with the autosomes, chromosomes harboring inversions do not exhibit evidence for enrichment of such genes, and genes that are top contributors to functional enrichment patterns of population differentiation tend to be clustered in the genome. Further, the magnitude of variation for the sex expression ratio across populations did not substantially differ between male- and female-biased genes, except for some populations in which male-limited expressed genes showed more variation than their female counterparts. In fact, female-biased genes exhibited a larger level of interpopulation variation than male-biased genes, both when assayed in males and females. Beyond uncovering the extensive adaptive potential of transcriptional variation in An. Arabiensis, our findings suggest that the evolutionary rate of changes in expression levels on the X chromosome exceeds that on the autosomes, while pointing to female-biased genes as the most variable component of the An. Arabiensis transcriptome.
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Affiliation(s)
- Vivek Jayaswal
- School of Mathematics and Statistics, The University of Sydney, Sydney, NSW, Australia
| | - Cyrille Ndo
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso
| | - Hsiu-Ching Ma
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, USA
| | - Bryan D Clifton
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, USA
| | - Marco Pombi
- Dipartimento di Sanità Pubblica e Malattie Infettive, University of Rome "Sapienza", Rome, Italy
| | - Kevin Cabrera
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, USA
| | - Anna Couhet
- Unité Mixte de Recherche Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle, University of Montpellier, CNRS, Montpellier, IRD, France
| | - Karine Mouline
- Unité Mixte de Recherche Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle, University of Montpellier, CNRS, Montpellier, IRD, France
| | - Abdoulaye Diabaté
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso
| | - Roch Dabiré
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso
| | - Diego Ayala
- Unité Mixte de Recherche Maladies Infectieuses et Vecteurs: Ecologie, Génétique, Evolution et Contrôle, University of Montpellier, CNRS, Montpellier, IRD, France
| | - José M Ranz
- Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California, USA
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14
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Longo-Pendy NM, Tene-Fossog B, Tawedi RE, Akone-Ella O, Toty C, Rahola N, Braun JJ, Berthet N, Kengne P, Costantini C, Ayala D. Ecological plasticity to ions concentration determines genetic response and dominance of Anopheles coluzzii larvae in urban coastal habitats of Central Africa. Sci Rep 2021; 11:15781. [PMID: 34349141 PMCID: PMC8338965 DOI: 10.1038/s41598-021-94258-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2020] [Accepted: 06/29/2021] [Indexed: 02/07/2023] Open
Abstract
In Central Africa, the malaria vector Anopheles coluzzii is predominant in urban and coastal habitats. However, little is known about the environmental factors that may be involved in this process. Here, we performed an analysis of 28 physicochemical characteristics of 59 breeding sites across 5 urban and rural sites in coastal areas of Central Africa. We then modelled the relative frequency of An. coluzzii larvae to these physicochemical parameters in order to investigate environmental patterns. Then, we assessed the expression variation of 10 candidate genes in An. coluzzii, previously incriminated with insecticide resistance and osmoregulation in urban settings. Our results confirmed the ecological plasticity of An. coluzzii larvae to breed in a large range of aquatic conditions and its predominance in breeding sites rich in ions. Gene expression patterns were comparable between urban and rural habitats, suggesting a broad response to ions concentrations of whatever origin. Altogether, An. coluzzii exhibits a plastic response to occupy both coastal and urban habitats. This entails important consequences for malaria control in the context of the rapid urban expansion in Africa in the coming years.
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Affiliation(s)
| | | | - Robert E. Tawedi
- grid.473396.cInstitut de Recherches Géologiques Et Minières / Centre de Recherches Hydrologiques, Yaoundé, Cameroon
| | | | - Celine Toty
- grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier, France
| | - Nil Rahola
- grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier, France
| | - Jean-Jacques Braun
- grid.473396.cInstitut de Recherches Géologiques Et Minières / Centre de Recherches Hydrologiques, Yaoundé, Cameroon ,grid.462928.30000 0000 9033 1612Géosciences Environnement Toulouse, Université de Toulouse, CNRS, IRD, Toulouse, France ,International Joint Laboratory DYCOFAC, IRGM-UY1-IRD, BP 1857, Yaoundé, Cameroon
| | - Nicolas Berthet
- grid.418115.80000 0004 1808 058XCIRMF, Franceville, Gabon ,grid.428999.70000 0001 2353 6535Institut Pasteur, Unité Environnement Et Risque Infectieux, Cellule D’Intervention Biologique D’Urgence, Paris, France
| | - Pierre Kengne
- grid.418115.80000 0004 1808 058XCIRMF, Franceville, Gabon ,grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier, France
| | - Carlo Costantini
- grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier, France
| | - Diego Ayala
- grid.418115.80000 0004 1808 058XCIRMF, Franceville, Gabon ,grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, 911 avenue Agropolis, BP 64501, 34394 Montpellier, France
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15
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Bennett KL, McMillan WO, Loaiza JR. The genomic signal of local environmental adaptation in Aedes aegypti mosquitoes. Evol Appl 2021; 14:1301-1313. [PMID: 34025769 PMCID: PMC8127705 DOI: 10.1111/eva.13199] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 12/22/2020] [Accepted: 01/21/2021] [Indexed: 12/19/2022] Open
Abstract
Local adaptation is important when predicting arthropod-borne disease risk because of its impacts on vector population fitness and persistence. However, the extent that vector populations are adapted to the environment generally remains unknown. Despite low population structure and high gene flow in Aedes aegypti mosquitoes across Panama, excepting the province of Bocas del Toro, we identified 128 candidate SNPs, clustered within 17 genes, which show a strong genomic signal of local environmental adaptation. This putatively adaptive variation occurred across fine geographical scales with the composition and frequency of candidate adaptive loci differing between populations in wet tropical environments along the Caribbean coast and dry tropical conditions typical of the Pacific coast. Temperature and vegetation were important predictors of adaptive genomic variation in Ae. aegypti with several potential areas of local adaptation identified. Our study lays the foundations of future work to understand whether environmental adaptation in Ae. aegypti impacts the arboviral disease landscape and whether this could either aid or hinder efforts of population control.
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Affiliation(s)
- Kelly L. Bennett
- Smithsonian Tropical Research InstituteBalboa AnconRepublic of Panama
| | - W. Owen McMillan
- Smithsonian Tropical Research InstituteBalboa AnconRepublic of Panama
| | - Jose R. Loaiza
- Smithsonian Tropical Research InstituteBalboa AnconRepublic of Panama
- Instituto de Investigaciones Científicas y Servicios de Alta TecnologíaPanamáRepublic of Panama
- Programa Centroamericano de Maestría en EntomologíaUniversidad de PanamáPanamáRepublic of Panama
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16
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Montanez-Gonzalez R, Vallera AC, Calzetta M, Pichler V, Love RR, Guelbeogo MW, Dabire RK, Pombi M, Costantini C, Simard F, Della Torre A, Besansky NJ. A PCR-RFLP method for genotyping of inversion 2Rc in Anopheles coluzzii. Parasit Vectors 2021; 14:174. [PMID: 33752733 PMCID: PMC7983089 DOI: 10.1186/s13071-021-04657-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 02/23/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Genotyping of polymorphic chromosomal inversions in malaria vectors such as An. coluzzii Coetzee & Wilkerson is important, both because they cause cryptic population structure that can mislead vector analysis and control and because they influence epidemiologically relevant eco-phenotypes. The conventional cytogenetic method of genotyping is an impediment because it is labor intensive, requires specialized training, and can be applied only to one gender and developmental stage. Here, we circumvent these limitations by developing a simple and rapid molecular method of genotyping inversion 2Rc in An. coluzzii that is both economical and field-friendly. This inversion is strongly implicated in temporal and spatial adaptations to climatic and ecological variation, particularly aridity. METHODS Using a set of tag single-nucleotide polymorphisms (SNPs) strongly correlated with inversion orientation, we identified those that overlapped restriction enzyme recognition sites and developed four polymerase chain reaction (PCR) restriction fragment length polymorphism (RFLP) assays that distinguish alternative allelic states at the tag SNPs. We assessed the performance of these assays using mosquito population samples from Burkina Faso that had been cytogenetically karyotyped as well as genotyped, using two complementary high-throughput molecular methods based on tag SNPs. Further validation was performed using mosquito population samples from additional West African (Benin, Mali, Senegal) and Central African (Cameroon) countries. RESULTS Of four assays tested, two were concordant with the 2Rc cytogenetic karyotype > 90% of the time in all samples. We recommend that these two assays be employed in tandem for reliable genotyping. By accepting only those genotypic assignments where both assays agree, > 99% of assignments are expected to be accurate. CONCLUSIONS We have developed tandem PCR-RFLP assays for the accurate genotyping of inversion 2Rc in An. coluzzii. Because this approach is simple, inexpensive, and requires only basic molecular biology equipment, it is widely accessible. These provide a crucial tool for probing the molecular basis of eco-phenotypes relevant to malaria epidemiology and vector control.
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Affiliation(s)
- Raquel Montanez-Gonzalez
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Alexandra C Vallera
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Maria Calzetta
- Dipartimento di Sanità Pubblica e Malattie Infettive, Università "La Sapienza", Istituto Pasteur-Fondazione Cenci-Bolognetti, 00185, Rome, Italy
| | - Verena Pichler
- Dipartimento di Sanità Pubblica e Malattie Infettive, Università "La Sapienza", Istituto Pasteur-Fondazione Cenci-Bolognetti, 00185, Rome, Italy
| | - Rachel R Love
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Moussa W Guelbeogo
- Centre National de Recherche et Formation sur Le Paludisme (CNRFP), Ouagadougou, Burkina Faso
| | - Roch K Dabire
- Institut de Recherche en Sciences de la Santé (IRSS)/Centre Muraz, Bobo-Dioulasso, Burkina Faso
| | - Marco Pombi
- Dipartimento di Sanità Pubblica e Malattie Infettive, Università "La Sapienza", Istituto Pasteur-Fondazione Cenci-Bolognetti, 00185, Rome, Italy
| | - Carlo Costantini
- MIVEGEC, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Frederic Simard
- MIVEGEC, University of Montpellier, IRD, CNRS, Montpellier, France
| | - Alessandra Della Torre
- Dipartimento di Sanità Pubblica e Malattie Infettive, Università "La Sapienza", Istituto Pasteur-Fondazione Cenci-Bolognetti, 00185, Rome, Italy
| | - Nora J Besansky
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA.
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.
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17
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Martinez J, Showering A, Oke C, Jones RT, Logan JG. Differential attraction in mosquito-human interactions and implications for disease control. Philos Trans R Soc Lond B Biol Sci 2020; 376:20190811. [PMID: 33357061 PMCID: PMC7776937 DOI: 10.1098/rstb.2019.0811] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Mosquito-borne diseases are a major burden on human health worldwide and their eradication through vector control methods remains challenging. In particular, the success of vector control interventions for targeting diseases such as malaria is under threat, in part due to the evolution of insecticide resistance, while for other diseases effective control solutions are still lacking. The rate at which mosquitoes encounter and bite humans is a key determinant of their capacity for disease transmission. Future progress is strongly reliant on improving our understanding of the mechanisms leading to a mosquito bite. Here, we review the biological factors known to influence the attractiveness of mosquitoes to humans, such as body odour, the skin microbiome, genetics and infection by parasites. We identify the knowledge gaps around the relative contribution of each factor, and the potential links between them, as well as the role of natural selection in shaping vector–host–parasite interactions. Finally, we argue that addressing these questions will contribute to improving current tools and the development of novel interventions for the future. This article is part of the theme issue ‘Novel control strategies for mosquito-borne diseases'.
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Affiliation(s)
- Julien Martinez
- Department of Disease Control, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK
| | - Alicia Showering
- Department of Disease Control, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK
| | - Catherine Oke
- Department of Disease Control, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK
| | - Robert T Jones
- Department of Disease Control, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK
| | - James G Logan
- Department of Disease Control, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK
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18
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Abstract
Advances in genomics have led to an appreciation that introgression is common, but its evolutionary consequences are poorly understood. In recent species radiations the sharing of genetic variation across porous species boundaries can facilitate adaptation to new environments and generate novel phenotypes, which may contribute to further diversification. Most Anopheles mosquito species that are of major importance as human malaria vectors have evolved within recent and rapid radiations of largely nonvector species. Here, we focus on one of the most medically important yet understudied anopheline radiations, the Afrotropical Anopheles funestus complex (AFC), to investigate the role of introgression in its diversification and the possible link between introgression and vector potential. The AFC comprises at least seven morphologically similar species, yet only An. funestus sensu stricto is a highly efficient malaria vector with a pan-African distribution. Based on de novo genome assemblies and additional whole-genome resequencing, we use phylogenomic and population genomic analyses to establish species relationships. We show that extensive interspecific gene flow involving multiple species pairs has shaped the evolutionary history of the AFC since its diversification. The most recent introgression event involved a massive and asymmetrical movement of genes from a distantly related AFC lineage into An. funestus, an event that predated and plausibly facilitated its subsequent dramatic geographic range expansion across most of tropical Africa. We propose that introgression may be a common mechanism facilitating adaptation to new environments and enhancing vectorial capacity in Anopheles mosquitoes.
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19
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Ould Lemrabott MA, Le Goff G, Kengne P, Ndiaye O, Costantini C, Mint Lekweiry K, Ould Ahmedou Salem MS, Robert V, Basco L, Simard F, Ould Mohamed Salem Boukhary A. First report of Anopheles (Cellia) multicolor during a study of tolerance to salinity of Anopheles arabiensis larvae in Nouakchott, Mauritania. Parasit Vectors 2020; 13:522. [PMID: 33066796 PMCID: PMC7566140 DOI: 10.1186/s13071-020-04400-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 10/09/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Anopheles multicolor is known to be present in the arid areas of Africa north of the Sahara Desert, especially in oases. To date, its presence in Mauritania has not been reported. Here, we present the first record of its presence in Nouakchott, the capital of Mauritania. The larvae of An. multicolor, together with those of An. arabiensis, the major malaria vector in the city, were found thriving in highly saline surface water collections. METHODS Entomological surveys were carried out during 2016-2017 in Nouakchott. Mosquito larval habitats were investigated through larval surveys while indoor resting culicid fauna were collected using hand-held aspirator. Physicochemical parameters of the larval habitats were measured on-site, at the time mosquitoes were collected. Larvae and pupae were reared to adults in the insectaries. Morphological and polymerase chain reaction (PCR)-based methods were used to identify newly emerged adults. Batches of fourth-instar larvae were used to assess salinity tolerance by exposing them to increasing concentrations of NaCl, and mortality was monitored throughout development. RESULTS Morphological and molecular results confirmed that the specimens were An. multicolor and An. arabiensis. Sequences of 24 An. multicolor adult mosquitoes showed 100% nucleotide identity with the published sequences of An. multicolor from Iran. The physicochemical analysis of the water from the two larval habitats revealed highly saline conditions, with NaCl content ranging between 16.8 and 28.9 g/l (i.e. between c.50-80% seawater). Anopheles multicolor and An. arabiensis fourth-instar larvae survival rates at 17.5 g/l NaCl were 86.5% and 75%, respectively. Anopheles arabiensis larvae showed variable levels of salt tolerance according to the larval habitat. Adult An. multicolor specimens were collected resting indoor at low frequency (0.7%) compared to the other culicid mosquitoes. CONCLUSIONS To the best of our knowledge, this paper is the first report of An. multicolor in Mauritania, extending the known distributional range of the species to the south, as well as to the west. Highly salt-tolerant populations of An. arabiensis and An. multicolor were observed. Because salt-water collections are widespread in Nouakchott, the relevance of these findings for the dynamics and epidemiology of malaria transmission needs to be assessed.
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Affiliation(s)
- Mohamed Aly Ould Lemrabott
- Laboratoire environnement, santé et société LE2S, Unité de recherche génomes et milieux (jeune équipe associée à l'IRD), Université de Nouakchott Al-Aasriya, BP 880, Nouakchott, Mauritania. .,MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier, France.
| | - Gilbert Le Goff
- MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Pierre Kengne
- MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier, France.,CIRMF, Franceville, Gabon
| | - Ousmane Ndiaye
- Laboratoire environnement, santé et société LE2S, Unité de recherche génomes et milieux (jeune équipe associée à l'IRD), Université de Nouakchott Al-Aasriya, BP 880, Nouakchott, Mauritania
| | - Carlo Costantini
- MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Khadijetou Mint Lekweiry
- Laboratoire environnement, santé et société LE2S, Unité de recherche génomes et milieux (jeune équipe associée à l'IRD), Université de Nouakchott Al-Aasriya, BP 880, Nouakchott, Mauritania
| | - Mohamed Salem Ould Ahmedou Salem
- Laboratoire environnement, santé et société LE2S, Unité de recherche génomes et milieux (jeune équipe associée à l'IRD), Université de Nouakchott Al-Aasriya, BP 880, Nouakchott, Mauritania
| | - Vincent Robert
- MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Leonardo Basco
- Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.,IHU-Méditerranée Infection, Marseille, France
| | - Frédéric Simard
- MIVEGEC, IRD, CNRS, University of Montpellier, Montpellier, France
| | - Ali Ould Mohamed Salem Boukhary
- Laboratoire environnement, santé et société LE2S, Unité de recherche génomes et milieux (jeune équipe associée à l'IRD), Université de Nouakchott Al-Aasriya, BP 880, Nouakchott, Mauritania. .,Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France. .,IHU-Méditerranée Infection, Marseille, France.
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20
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Gamez S, Srivastav S, Akbari OS, Lau NC. Diverse Defenses: A Perspective Comparing Dipteran Piwi-piRNA Pathways. Cells 2020; 9:E2180. [PMID: 32992598 PMCID: PMC7601171 DOI: 10.3390/cells9102180] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Revised: 09/22/2020] [Accepted: 09/23/2020] [Indexed: 02/07/2023] Open
Abstract
Animals face the dual threat of virus infections hijacking cellular function and transposons proliferating in germline genomes. For insects, the deeply conserved RNA interference (RNAi) pathways and other chromatin regulators provide an important line of defense against both viruses and transposons. For example, this innate immune system displays adaptiveness to new invasions by generating cognate small RNAs for targeting gene silencing measures against the viral and genomic intruders. However, within the Dipteran clade of insects, Drosophilid fruit flies and Culicids mosquitoes have evolved several unique mechanistic aspects of their RNAi defenses to combat invading transposons and viruses, with the Piwi-piRNA arm of the RNAi pathways showing the greatest degree of novel evolution. Whereas central features of Piwi-piRNA pathways are conserved between Drosophilids and Culicids, multiple lineage-specific innovations have arisen that may reflect distinct genome composition differences and specific ecological and physiological features dividing these two branches of Dipterans. This perspective review focuses on the most recent findings illuminating the Piwi/piRNA pathway distinctions between fruit flies and mosquitoes, and raises open questions that need to be addressed in order to ameliorate human diseases caused by pathogenic viruses that mosquitoes transmit as vectors.
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Affiliation(s)
- Stephanie Gamez
- Division of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, CA 92093, USA; (S.G.); (O.S.A.)
| | - Satyam Srivastav
- Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853-2703, USA;
| | - Omar S. Akbari
- Division of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, CA 92093, USA; (S.G.); (O.S.A.)
| | - Nelson C. Lau
- Department of Biochemistry and Genome Science Institute, Boston University School of Medicine, Boston, MA 02118, USA
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21
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Circadian Clocks: Mosquitoes Master the Dark Side of the Room. Curr Biol 2020; 30:R932-R934. [PMID: 32810451 DOI: 10.1016/j.cub.2020.06.069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Aedes aegypti and Anopheles coluzzii mosquitoes exhibit diurnal and nocturnal behaviors, respectively. Baik et al. reveal the clock network architecture underlying each species' light preferences.
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22
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Syafruddin D, Lestari YE, Permana DH, Asih PBS, St. Laurent B, Zubaidah S, Rozi IE, Kosasih S, Shinta, Sukowati S, Hakim L, Haryanto E, Mangunwardoyo W, Bangs MJ, Lobo NF. Anopheles sundaicus complex and the presence of Anopheles epiroticus in Indonesia. PLoS Negl Trop Dis 2020; 14:e0008385. [PMID: 32614914 PMCID: PMC7363104 DOI: 10.1371/journal.pntd.0008385] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 07/15/2020] [Accepted: 05/12/2020] [Indexed: 11/21/2022] Open
Abstract
Anopheles sundaicus s.l. is an important malaria vector primarily found in coastal landscapes of western and central Indonesia. The species complex has a wide geographical distribution in South and Southeast Asia and exhibits ecological and behavioural variability over its range. Studies on understanding the distribution of different members in the complex and their bionomics related to malaria transmission might be important guiding more effective vector intervention strategies. Female An. sundaicus s.l. were collected from seven provinces, 12 locations in Indonesia representing Sumatra: North Sumatra, Bangka-Belitung, South Lampung, and Bengkulu; in Java: West Java; and the Lesser Sunda Islands: West Nusa Tenggara and East Nusa Tenggara provinces. Sequencing of ribosomal DNA ITS2 gene fragments and two mitochondrial DNA gene markers, COI and cytb, enabled molecular identification of morphologically indistinguishable members of the complex. Findings allowed inference on the distribution of the An. sundaicus s.l. present in Indonesia and further illustrate the phylogenetic relationships of An. epiroticus within the complex. A total of 370 An. sundaicus s.l specimens were analysed for the ITS2 fragment. The ITS2 sequence alignment revealed two consistent species-specific point mutations, a T>C transition at base 479 and a G>T transversion at base 538 that differentiated five haplotypes: TG, CG, TT, CT, and TY. The TG haplotype matched published An. epiroticus-indicative sequences from Thailand, Vietnam and peninsular Malaysia. The previously described insertion event (base 603) was observed in all identified specimens. Analysis of the COI and cytb genes revealed no consistent nucleotide variations that could definitively distinguish An. epiroticus from other members in the Sundaicus Complex. The findings indicate and support the existence of An. epiroticus in North Sumatra and Bangka-Belitung archipelago. Further studies are recommended to determine the full distributional extent of the Sundaicus complex in Indonesia and investigate the role of these species in malaria transmission.
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Affiliation(s)
- Din Syafruddin
- Eijkman Institute for Molecular Biology, Jakarta, Indonesia
- Department of Parasitology, Faculty of Medicine, Hasanuddin University, Makassar, Indonesia
| | | | | | | | - Brandyce St. Laurent
- Eck Institute for Global Health, University of Notre Dame, IN, United States of America
| | - Siti Zubaidah
- Eijkman Institute for Molecular Biology, Jakarta, Indonesia
| | - Ismail E. Rozi
- Eijkman Institute for Molecular Biology, Jakarta, Indonesia
| | - Sully Kosasih
- Eijkman Institute for Molecular Biology, Jakarta, Indonesia
| | - Shinta
- Health Ecology Research & Development Centre, National Institute of Health, Research and Development, Ministry of Health, Jakarta, Indonesia
| | - Supratman Sukowati
- Health Ecology Research & Development Centre, National Institute of Health, Research and Development, Ministry of Health, Jakarta, Indonesia
| | - Lukman Hakim
- Division of Vector Borne Disease, Ministry of Health, Jakarta, Indonesia
| | - Edhi Haryanto
- Division of Vector Borne Disease, Ministry of Health, Jakarta, Indonesia
| | - Wibowo Mangunwardoyo
- Department of Biology, Faculty of Mathematics and Science, Universitas Indonesia, Depok, Indonesia
| | - Michael J. Bangs
- PT Freeport Indonesia, International SOS, Freeport Medical Services, Kuala Kencana, Papua, Indonesia
- Department of Entomology, Faculty of Agriculture, Kasetsart University, Bangkok, Thailand
| | - Neil F. Lobo
- Eck Institute for Global Health, University of Notre Dame, IN, United States of America
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23
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Sharma A, Kinney NA, Timoshevskiy VA, Sharakhova MV, Sharakhov IV. Structural Variation of the X Chromosome Heterochromatin in the Anopheles gambiae Complex. Genes (Basel) 2020; 11:E327. [PMID: 32204543 PMCID: PMC7140835 DOI: 10.3390/genes11030327] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Revised: 03/13/2020] [Accepted: 03/16/2020] [Indexed: 12/31/2022] Open
Abstract
Heterochromatin is identified as a potential factor driving diversification of species. To understand the magnitude of heterochromatin variation within the Anopheles gambiae complex of malaria mosquitoes, we analyzed metaphase chromosomes in An. arabiensis, An. coluzzii, An. gambiae, An. merus, and An. quadriannulatus. Using fluorescence in situ hybridization (FISH) with ribosomal DNA (rDNA), a highly repetitive fraction of DNA, and heterochromatic Bacterial Artificial Chromosome (BAC) clones, we established the correspondence of pericentric heterochromatin between the metaphase and polytene X chromosomes of An. gambiae. We then developed chromosome idiograms and demonstrated that the X chromosomes exhibit qualitative differences in their pattern of heterochromatic bands and position of satellite DNA (satDNA) repeats among the sibling species with postzygotic isolation, An. arabiensis, An. merus, An. quadriannulatus, and An. coluzzii or An. gambiae. The identified differences in the size and structure of the X chromosome heterochromatin point to a possible role of repetitive DNA in speciation of mosquitoes. We found that An. coluzzii and An. gambiae, incipient species with prezygotic isolation, share variations in the relative positions of the satDNA repeats and the proximal heterochromatin band on the X chromosomes. This previously unknown genetic polymorphism in malaria mosquitoes may be caused by a differential amplification of DNA repeats or an inversion in the sex chromosome heterochromatin.
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Affiliation(s)
- Atashi Sharma
- Department of Entomology, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA; (A.S.); (V.A.T.); (M.V.S.)
| | - Nicholas A. Kinney
- Genomics Bioinformatics and Computational Biology, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA;
| | - Vladimir A. Timoshevskiy
- Department of Entomology, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA; (A.S.); (V.A.T.); (M.V.S.)
| | - Maria V. Sharakhova
- Department of Entomology, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA; (A.S.); (V.A.T.); (M.V.S.)
- Laboratory of Evolutionary Genomics of Insects, the Federal Research Center Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia
- Laboratory of Ecology, Genetics and Environmental Protection, Tomsk State University, 634050 Tomsk, Russia
| | - Igor V. Sharakhov
- Department of Entomology, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA; (A.S.); (V.A.T.); (M.V.S.)
- Genomics Bioinformatics and Computational Biology, Virginia Polytechnic and State University, Blacksburg, VA 24061, USA;
- Laboratory of Evolutionary Genomics of Insects, the Federal Research Center Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia
- Department of Cytology and Genetics, Tomsk State University, 634050 Tomsk, Russia
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24
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Tomazatos A, Jöst H, Schulze J, Spînu M, Schmidt-Chanasit J, Cadar D, Lühken R. Blood-meal analysis of Culicoides (Diptera: Ceratopogonidae) reveals a broad host range and new species records for Romania. Parasit Vectors 2020; 13:79. [PMID: 32066493 PMCID: PMC7027113 DOI: 10.1186/s13071-020-3938-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Accepted: 02/03/2020] [Indexed: 01/20/2023] Open
Abstract
BACKGROUND Culicoides biting midges are potential vectors of different pathogens. However, especially for eastern Europe, there is a lack of knowledge on the host-feeding patterns of this vector group. Therefore, this study aimed to identify Culicoides spp. and their vertebrate hosts collected in a wetland ecosystem. METHODS Culicoides spp. were collected weekly from May to August 2017, using Biogents traps with UV light at four sites in the Danube Delta Biosphere Reserve, Romania. Vectors and hosts were identified with a DNA barcoding approach. The mitochondrial cytochrome c oxidase subunit 1 was used to identify Culicoides spp., while vertebrate hosts were determined targeting cytochrome b or 16S rRNA gene fragments. A maximum likelihood phylogenetic tree was constructed to verify the biting midge identity against other conspecific Palaearctic Culicoides species. A set of unfed midges was used for morphological confirmation of species identification using slide-mounted wings. RESULTS Barcoding allowed the species identification and detection of corresponding hosts for 1040 (82.3%) of the 1264 analysed specimens. Eight Culicoides spp. were identified with Culicoides griseidorsum, Culicoides puncticollis and Culicoides submaritimus as new species records for Romania. For 39 specimens no similar sequences were found in GenBank. This group of unknown Culicoides showed a divergence of 15.6-16.3% from the closest identified species and clustered in a monophyletic clade, i.e. a novel species or a species without reference sequences in molecular libraries. For all Culicoides spp., nine mammalian and 24 avian species were detected as hosts. With the exception of C. riethi (n = 12), at least one avian host was detected for all Culicoides spp., but this host group only dominated for Culicoides kibunensis and the unknown Culicoides sp.. The most common host group were mammals (n = 993, 87.6% of all identified blood sources) dominated by cattle (n = 817, 70.6%). CONCLUSIONS Most Culicoides spp. showed a broad host-feeding pattern making them potential bridge vectors. At the same time, new records of biting midge species for Romania, as well as a potentially unknown Culicoides species, highlight the lack of knowledge regarding the biting midge species and their genetic diversity in eastern Europe.
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Affiliation(s)
- Alexandru Tomazatos
- WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - Hanna Jöst
- WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - Jonny Schulze
- WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - Marina Spînu
- University of Agricultural Sciences and Veterinary Medicine, Cluj-Napoca, Romania
| | - Jonas Schmidt-Chanasit
- WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.,Faculty of Mathematics, Informatics and Natural Sciences, Universität Hamburg, Hamburg, Germany
| | - Daniel Cadar
- WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - Renke Lühken
- WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany. .,Faculty of Mathematics, Informatics and Natural Sciences, Universität Hamburg, Hamburg, Germany.
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25
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Ononamadu CJ, Datit JT, Imam AA. Insecticide Resistance Profile of Anopheles gambiae Mosquitoes: A Study of a Residential and Industrial Breeding Sites in Kano Metropolis, Nigeria. ENVIRONMENTAL HEALTH INSIGHTS 2020; 14:1178630219897272. [PMID: 31975780 PMCID: PMC6958648 DOI: 10.1177/1178630219897272] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Accepted: 12/05/2019] [Indexed: 05/29/2023]
Abstract
Monitoring and understanding the trend and dynamics of insecticide resistance is very key to devising efficient control strategies. This study was carried out to characterize the mosquito population, its insecticide resistance profile, and the physicochemical properties of their breeding sites in Sharada and Wailari of Kano State, Nigeria. Six breeding sites from the 2 study areas were sampled and their physicochemical parameters determined. Mosquito larvae were sampled from the sites and reared to adult. The emergent adults were morphologically and molecularly identified to species level. The World Health Organization (WHO) susceptibility assay was carried out on the adult mosquitoes using different classes of insecticides in WHO discriminating concentrations. kdr-mutation was detected by polymerase chain reaction (PCR)-based method using the permethrin (pyrethroid) resistant and susceptible adult mosquitoes. Most of the determined physicochemical parameters were significantly higher in the industrial area, Sharada. Morphologically, the mosquitoes from the 2 sites were identified as Anopheles gambiae and 100% of the randomly sampled population were found to be Anopheles coluzzii by PCR-based molecular technique. The WHO susceptible assay revealed a graded level of resistance to bendiocarb, dichlorodiphenyltrichloroethane (DDT), and permethrin with mortalities of 78.36%, 75.74%; 43.44%, 56.96%; and 37.50%, 37.50% in both Sharada and Wailari, respectively. Pre-exposure to piperonyl butoxide (PBO) resulted in a significant but minor recovery of susceptibility to permethrin. The kdr mutation frequency was higher in Sharada (45.71%) relative to Wailari (31.43%). Higher kdr mutation frequency was also observed in the resistant population (48.56%) relative to the susceptible (28.54%). The kdr mutation frequency was weakly associated with the resistance status (odds ratio [OR]: 5.9, χ2:3.58, P = .058) and the breeding sites (OR: 3.46, χ2:2.90, P = .088). In conclusion, the study revealed a highly pyrethroid-resistant A coluzzii population with low PBO recovery rate. Furthermore, the data suggested the involvement of kdr mutation, detoxification enzyme, and possibly abiotic factors of the breeding sites.
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Affiliation(s)
- Chimaobi J Ononamadu
- Department of Biochemistry, Bayero University, Kano, Nigeria
- Department of Biochemistry and Forensic Science, Nigeria Police Academy, Wudil, Nigeria
| | - John T Datit
- Department of Biochemistry, Bayero University, Kano, Nigeria
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26
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Holmes CJ, Benoit JB. Biological Adaptations Associated with Dehydration in Mosquitoes. INSECTS 2019; 10:insects10110375. [PMID: 31661928 PMCID: PMC6920799 DOI: 10.3390/insects10110375] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Revised: 10/22/2019] [Accepted: 10/23/2019] [Indexed: 12/05/2022]
Abstract
Diseases that are transmitted by mosquitoes are a tremendous health and socioeconomic burden with hundreds of millions of people being impacted by mosquito-borne illnesses annually. Many factors have been implicated and extensively studied in disease transmission dynamics, but knowledge regarding how dehydration impacts mosquito physiology, behavior, and resulting mosquito-borne disease transmission remain underdeveloped. The lapse in understanding on how mosquitoes respond to dehydration stress likely obscures our ability to effectively study mosquito physiology, behavior, and vectorial capabilities. The goal of this review is to develop a profile of factors underlying mosquito biology that are altered by dehydration and the implications that are related to disease transmission.
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Affiliation(s)
- Christopher J Holmes
- Department of Biological Sciences, University of Cincinnati, Cincinnati, OH 45221, USA.
| | - Joshua B Benoit
- Department of Biological Sciences, University of Cincinnati, Cincinnati, OH 45221, USA.
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27
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Barrón MG, Paupy C, Rahola N, Akone-Ella O, Ngangue MF, Wilson-Bahun TA, Pombi M, Kengne P, Costantini C, Simard F, González J, Ayala D. A new species in the major malaria vector complex sheds light on reticulated species evolution. Sci Rep 2019; 9:14753. [PMID: 31611571 PMCID: PMC6791875 DOI: 10.1038/s41598-019-49065-5] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Accepted: 08/14/2019] [Indexed: 12/31/2022] Open
Abstract
Complexes of closely related species provide key insights into the rapid and independent evolution of adaptive traits. Here, we described and studied Anopheles fontenillei sp.n., a new species in the Anopheles gambiae complex that we recently discovered in the forested areas of Gabon, Central Africa. Our analysis placed the new taxon in the phylogenetic tree of the An. gambiae complex, revealing important introgression events with other members of the complex. Particularly, we detected recent introgression, with Anopheles gambiae and Anopheles coluzzii, of genes directly involved in vectorial capacity. Moreover, genome analysis of the new species allowed us to clarify the evolutionary history of the 3La inversion. Overall, An. fontenillei sp.n. analysis improved our understanding of the relationship between species within the An. gambiae complex, and provided insight into the evolution of vectorial capacity traits that are relevant for the successful control of malaria in Africa.
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Affiliation(s)
| | | | - Nil Rahola
- MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France.,CIRMF, Franceville, Gabon
| | | | | | | | | | - Pierre Kengne
- MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France
| | | | | | | | - Diego Ayala
- MIVEGEC, IRD, CNRS, Univ. Montpellier, Montpellier, France. .,CIRMF, Franceville, Gabon.
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28
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Love RR, Redmond SN, Pombi M, Caputo B, Petrarca V, Della Torre A, Besansky NJ. In Silico Karyotyping of Chromosomally Polymorphic Malaria Mosquitoes in the Anopheles gambiae Complex. G3 (BETHESDA, MD.) 2019; 9:3249-3262. [PMID: 31391198 PMCID: PMC6778791 DOI: 10.1534/g3.119.400445] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Accepted: 07/30/2019] [Indexed: 01/13/2023]
Abstract
Chromosomal inversion polymorphisms play an important role in adaptation to environmental heterogeneities. For mosquito species in the Anopheles gambiae complex that are significant vectors of human malaria, paracentric inversion polymorphisms are abundant and are associated with ecologically and epidemiologically important phenotypes. Improved understanding of these traits relies on determining mosquito karyotype, which currently depends upon laborious cytogenetic methods whose application is limited both by the requirement for specialized expertise and for properly preserved adult females at specific gonotrophic stages. To overcome this limitation, we developed sets of tag single nucleotide polymorphisms (SNPs) inside inversions whose biallelic genotype is strongly correlated with inversion genotype. We leveraged 1,347 fully sequenced An. gambiae and Anopheles coluzzii genomes in the Ag1000G database of natural variation. Beginning with principal components analysis (PCA) of population samples, applied to windows of the genome containing individual chromosomal rearrangements, we classified samples into three inversion genotypes, distinguishing homozygous inverted and homozygous uninverted groups by inclusion of the small subset of specimens in Ag1000G that are associated with cytogenetic metadata. We then assessed the correlation between candidate tag SNP genotypes and PCA-based inversion genotypes in our training sets, selecting those candidates with >80% agreement. Our initial tests both in held-back validation samples from Ag1000G and in data independent of Ag1000G suggest that when used for in silico inversion genotyping of sequenced mosquitoes, these tags perform better than traditional cytogenetics, even for specimens where only a small subset of the tag SNPs can be successfully ascertained.
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Affiliation(s)
- R Rebecca Love
- Eck Institute for Global Health & Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556
| | - Seth N Redmond
- Infectious Disease and Microbiome Program, Broad Institute, Cambridge, MA 02142
| | - Marco Pombi
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza," Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Beniamino Caputo
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza," Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Vincenzo Petrarca
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza," Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Alessandra Della Torre
- Dipartimento di Sanità Pubblica e Malattie Infettive, Istituto Pasteur Italia-Fondazione Cenci-Bolognetti, Università di Roma "La Sapienza," Piazzale Aldo Moro, 5, 00185 Rome, Italy
| | - Nora J Besansky
- Eck Institute for Global Health & Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556
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Kengne P, Charmantier G, Blondeau‐Bidet E, Costantini C, Ayala D. Tolerance of disease‐vector mosquitoes to brackish water and their osmoregulatory ability. Ecosphere 2019. [DOI: 10.1002/ecs2.2783] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Affiliation(s)
- Pierre Kengne
- IRD CNRS University of Montpellier MIVEGEC Montpellier France
- CIRMF Franceville Gabon
| | - Guy Charmantier
- CNRS, Ifremer IRD UM Marbec University of Montpellier Montpellier France
| | - Eva Blondeau‐Bidet
- CNRS, Ifremer IRD UM Marbec University of Montpellier Montpellier France
| | | | - Diego Ayala
- IRD CNRS University of Montpellier MIVEGEC Montpellier France
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Thawornwattana Y, Dalquen D, Yang Z. Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex. Mol Biol Evol 2019; 35:2512-2527. [PMID: 30102363 PMCID: PMC6188554 DOI: 10.1093/molbev/msy158] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
Deep coalescence and introgression make it challenging to infer phylogenetic relationships among closely related species that arose through radiative speciation events. Despite numerous phylogenetic analyses and the availability of whole genomes, the phylogeny in the Anopheles gambiae species complex has not been confidently resolved. Here we extract over 80, 000 coding and noncoding short segments (called loci) from the genomes of six members of the species complex and use a Bayesian method under the multispecies coalescent model to infer the species tree, which takes into account genealogical heterogeneity across the genome and uncertainty in the gene trees. We obtained a robust estimate of the species tree from the distal region of the X chromosome: (A. merus, ((A. melas, (A. arabiensis, A. quadriannulatus)), (A. gambiae, A. coluzzii))), with A. merus to be the earliest branching species. This species tree agrees with the chromosome inversion phylogeny and provides a parsimonious interpretation of inversion and introgression events. Simulation informed by the real data suggest that the coalescent approach is reliable while the sliding-window analysis used in a previous phylogenomic study generates artifactual species trees. Likelihood ratio test of gene flow revealed strong evidence of autosomal introgression from A. arabiensis into A. gambiae (at the average rate of ∼0.2 migrants per generation), but not in the opposite direction, and introgression of the 3 L chromosomal region from A. merus into A. quadriannulatus. Our results highlight the importance of accommodating incomplete lineage sorting and introgression in phylogenomic analyses of species that arose through recent radiative speciation events.
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Affiliation(s)
- Yuttapong Thawornwattana
- Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.,Department of Microbiology, Faculty of Science, Mahidol University, Bangkok, Thailand
| | - Daniel Dalquen
- Department of Genetics, Evolution and Environment, University College London, London, United Kingdom
| | - Ziheng Yang
- Department of Genetics, Evolution and Environment, University College London, London, United Kingdom.,Radcliffe Institute for Advanced Studies, Harvard University, Cambridge, MA
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31
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Patterns of anopheline feeding/resting behaviour and Plasmodium infections in North Cameroon, 2011-2014: implications for malaria control. Parasit Vectors 2019; 12:297. [PMID: 31196161 PMCID: PMC6567421 DOI: 10.1186/s13071-019-3552-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 06/03/2019] [Indexed: 11/10/2022] Open
Abstract
Background Effective malaria control relies on evidence-based interventions. Anopheline behaviour and Plasmodium infections were investigated in North Cameroon, following long-lasting insecticidal net (LLIN) distribution in 2010. Methods During four consecutive years from 2011 to 2014, adult mosquitoes were collected indoors, outdoors and in exit traps across 38 locations in the Garoua, Pitoa and Mayo-Oulo health districts. Anophelines were morphologically and molecularly identified, then analysed for blood meal origins and Plasmodium falciparum circumsporozoite protein (Pf-CSP). Blood from children under 5 years-old using LLINs was examined for Plasmodium infections. Results Overall, 9376 anophelines belonging to 14 species/sibling species were recorded. Anopheles gambiae (s.l.) [An. arabiensis (73.3%), An. coluzzii (17.6%) and An. gambiae (s.s.) (9.1%)] was predominant (72%), followed by An. funestus (s.l.) (20.5%) and An. rufipes (6.5%). The recorded blood meals were mainly from humans (28%), cattle (15.6%) and sheep (11.6%) or mixed (45%). Pf-CSP rates were higher indoors (3.2–5.4%) versus outdoors (0.8–2.0%), and increased yearly (χ2 < 18, df = 10, P < 0.03). Malaria prevalence in children under 5 years-old, in households using LLINs was 30% (924/3088). Conclusions The present study revealed the variability of malaria vector resting and feeding behaviour, and the persistence of Plasmodium infections regardless the use of LLINs. Supplementary interventions to LLINs are therefore needed to sustain malaria prevention in North Cameroon.
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Bernardini F, Kriezis A, Galizi R, Nolan T, Crisanti A. Introgression of a synthetic sex ratio distortion system from Anopheles gambiae into Anopheles arabiensis. Sci Rep 2019; 9:5158. [PMID: 30914785 PMCID: PMC6435806 DOI: 10.1038/s41598-019-41646-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Accepted: 03/14/2019] [Indexed: 12/04/2022] Open
Abstract
I-PpoI is a homing endonuclease that has a high cleavage activity and specificity for a conserved sequence within the ribosomal rDNA repeats, located in a single cluster on the Anopheles gambiae X chromosome. This property has been exploited to develop a synthetic sex ratio distortion system in this mosquito species. When I-PpoI is expressed from a transgene during spermatogenesis in mosquitoes, the paternal X chromosome is shredded and only Y chromosome-bearing sperm are viable, resulting in a male-biased sex ratio of >95% in the progeny. These distorter male mosquitoes can efficiently suppress caged wild-type populations, providing a powerful tool for vector control strategies. Given that malaria mosquito vectors belong to a species complex comprising at least two major vectors, we investigated whether the sex distorter I-PpoI, originally integrated in the A. gambiae genome, could be transferred via introgression to the sibling vector species Anopheles arabiensis. In compliance with Haldane’s rule, F1 hybrid male sterility is known to occur in all intercrosses among members of the Anopheles gambiae complex. A scheme based on genetic crosses and transgene selection was used to bypass F1 hybrid male sterility and introgress the sex distorter I-PpoI into the A. arabiensis genetic background. Our data suggest that this sex distortion technique can be successfully applied to target A. arabiensis mosquitoes.
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Affiliation(s)
- Federica Bernardini
- Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
| | - Antonios Kriezis
- Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
| | - Roberto Galizi
- Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
| | - Tony Nolan
- Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
| | - Andrea Crisanti
- Department of Life Sciences, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
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33
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Choudhury TP, Gupta L, Kumar S. Identification, characterization and expression analysis of Anopheles stephensi double peroxidase. Acta Trop 2019; 190:210-219. [PMID: 30352205 DOI: 10.1016/j.actatropica.2018.10.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2018] [Revised: 10/13/2018] [Accepted: 10/14/2018] [Indexed: 11/28/2022]
Abstract
Peroxidases catalyze the reduction of peroxides and that, in turn, oxidize various substrates. They have been widely reported to play an important role in mosquito innate immunity against various pathogens. Here, we have characterized double heme peroxidase (AsDBLOX) gene from the Indian malaria vector Anopheles stephensi. It is a true ortholog of An. gambiae DBLOX. This 4209 bp AsDBLOX gene encodes for a protein of 1402 amino acids that has two duplicated peroxidase domains, domain I (from amino acid 61 to 527) and domain II (from amino acid 714 to 1252). The first domain has only substrate binding sites and lacks all other motifs of a functional heme peroxidase (e.g. heme binding site, calcium binding site and homodimer interface). Instead, it has two integrin binding motifs-LDV (Leu-Asp-Val) and RGD (Arg-Gly-Asp). The second peroxidase domain, however, has all the features of a complete heme peroxidase along with an integrin binding motif LDI (Leu-Asp-Ile). Thus, AsDBLOX gene is a unique type of peroxinectin as these groups of proteins are characterized by integrin binding motifs along with a heme peroxidase domain. We also observed that the AsDBLOX gene is expressed in all the life cycle stages of mosquito and is highly induced in the pupal stage of development which indicates its possible role in development.
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Affiliation(s)
- Tania Pal Choudhury
- Molecular Parasitology and Vector Biology Laboratory, Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, Rajasthan, India
| | - Lalita Gupta
- Molecular Parasitology and Vector Biology Laboratory, Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, Rajasthan, India; Department of Zoology, Ch. Bansi Lal University, Bhiwani, Haryana, India
| | - Sanjeev Kumar
- Molecular Parasitology and Vector Biology Laboratory, Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, Rajasthan, India; Department of Biotechnology, Ch. Bansi Lal University, Bhiwani, Haryana, India.
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34
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Elevated atmospheric CO 2 promoted speciation in mosquitoes (Diptera, Culicidae). Commun Biol 2018; 1:182. [PMID: 30417119 PMCID: PMC6218564 DOI: 10.1038/s42003-018-0191-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2018] [Accepted: 10/11/2018] [Indexed: 11/18/2022] Open
Abstract
Mosquitoes are of great medical significance as vectors of deadly diseases. Despite this, little is known about their evolutionary history or how their present day diversity has been shaped. Within a phylogenetic framework, here we show a strong correlation between climate change and mosquito speciation rates: the first time to our knowledge such an effect has been demonstrated for insects. Information theory reveals that although climate change is correlated with mosquito evolution there are other important factors at play. We identify one such driver to be the rise of mammals, which are predominant hosts of Culicidae. Regardless of the precise mechanism, we demonstrate a strong historical association. This finding, taken in combination with projected rises in atmospheric CO2 from anthropogenic activity, has important implications for culicid vector distributions and abundance, and consequently for human health. Chufei Tang and Katie E. Davis et al. show that an elevated atmospheric CO2 promotes the speciation rates of mosquitoes. They demonstrate that climate change can expedite the evolution of mammalian disease vectors, potentially increasing vector−pathogen interactions and affecting human health.
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35
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Ayala D, Zhang S, Chateau M, Fouet C, Morlais I, Costantini C, Hahn MW, Besansky NJ. Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae. Mol Ecol 2018; 28:1333-1342. [PMID: 30252170 DOI: 10.1111/mec.14880] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2018] [Revised: 09/08/2018] [Accepted: 09/10/2018] [Indexed: 12/30/2022]
Abstract
Inversion polymorphisms are responsible for many ecologically important phenotypes and are often found under balancing selection. However, the same features that ensure their large role in local adaptation-especially reduced recombination between alternate arrangements-mean that uncovering the precise loci within inversions that control these phenotypes is unachievable using standard mapping approaches. Here, we take advantage of long-term balancing selection on a pair of inversions in the mosquito Anopheles gambiae to map desiccation tolerance via pool-GWAS. Two polymorphic inversions on chromosome 2 of this species (denoted 2La and 2Rb) are associated with arid and hot conditions in Africa and are maintained in spatially and temporally heterogeneous environments. After measuring thousands of wild-caught individuals for survival under desiccation stress, we used phenotypically extreme individuals homozygous for alternative arrangements at the 2La inversion to construct pools for whole-genome sequencing. Genomewide association mapping using these pools revealed dozens of significant SNPs within both 2La and 2Rb, many of which neighboured genes controlling ion channels or related functions. Our results point to the promise of similar approaches in systems with inversions maintained by balancing selection and provide a list of candidate genes underlying the specific phenotypes controlled by the two inversions studied here.
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Affiliation(s)
- Diego Ayala
- Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana
| | - Simo Zhang
- Department of Computer Science, Indiana University, Bloomington, Indiana
| | - Mathieu Chateau
- Institut de Recherche pour le Développement, MIVEGEC (IRD, CNRS, Univ. Montpellier), Montpellier, France
| | - Caroline Fouet
- Institut de Recherche pour le Développement, MIVEGEC (IRD, CNRS, Univ. Montpellier), Montpellier, France.,Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCAEC), Yaoundé, Cameroon
| | - Isabelle Morlais
- Institut de Recherche pour le Développement, MIVEGEC (IRD, CNRS, Univ. Montpellier), Montpellier, France.,Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCAEC), Yaoundé, Cameroon
| | - Carlo Costantini
- Institut de Recherche pour le Développement, MIVEGEC (IRD, CNRS, Univ. Montpellier), Montpellier, France.,Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCAEC), Yaoundé, Cameroon
| | - Matthew W Hahn
- Department of Computer Science, Indiana University, Bloomington, Indiana.,Department of Biology, Indiana University, Bloomington, Indiana
| | - Nora J Besansky
- Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, Notre Dame, Indiana
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36
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Highly Efficient Site-Specific Mutagenesis in Malaria Mosquitoes Using CRISPR. G3-GENES GENOMES GENETICS 2018; 8:653-658. [PMID: 29233915 PMCID: PMC5919725 DOI: 10.1534/g3.117.1134] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Anopheles mosquitoes transmit at least 200 million annual malaria infections worldwide. Despite considerable genomic resources, mechanistic understanding of biological processes in Anopheles has been hampered by a lack of tools for reverse genetics. Here, we report successful application of the CRISPR/Cas9 system for highly efficient, site-specific mutagenesis in the diverse malaria vectors Anopheles albimanus, A. coluzzii, and A. funestus. When guide RNAs (gRNAs) and Cas9 protein are injected at high concentration, germline mutations are common and usually biallelic, allowing for the rapid creation of stable mutant lines for reverse genetic analysis. Our protocol should enable researchers to dissect the molecular and cellular basis of anopheline traits critical to successful disease transmission, potentially exposing new targets for malaria control.
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37
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Burkett-Cadena ND, Vittor AY. Deforestation and vector-borne disease: Forest conversion favors important mosquito vectors of human pathogens. Basic Appl Ecol 2017; 26:101-110. [PMID: 34290566 DOI: 10.1016/j.baae.2017.09.012] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The global burden of vector-borne diseases accounts for more than 17% of infectious diseases in humans. Rapid global expansion of previously obscure pathogens, such as Zika and chikungunya viruses in recent years highlights the importance of understanding how anthropogenic changes influence emergence and spillover of vector-borne diseases. Deforestation has been identified as one anthropogenic change that influences vector-borne disease prevalence, although contrasting pictures of the effects of deforestation on vector-borne disease transmission have been reported. These conflicting findings are likely attributable to the inherent complexity of vector-borne disease systems, which involve diverse groups of vectors, hosts and pathogens, depending on geography. The current study represents a quantitative exploration of the link between deforestation and mosquitoes, the most important common constituents of vector-borne disease systems. Analysis of data compiled from published field studies for 87 mosquito species from 12 countries revealed that about half of the species (52.9%) were associated with deforested habitats. Of these species that are favored by deforestation, a much larger percentage (56.5%) are confirmed vectors of human pathogens, compared to those negatively impacted by deforestation (27.5%). Moreover, species that serve as vectors of multiple human pathogens were all favored by deforestation, including Anopheles bancroftii, Anopheles darlingi, Anopheles farauti, Anopheles funestus s.l., Anopheles gambiae s.l., Anopheles subpictus, Aedes aegypti, Aedes vigilax, Culex annulirostris, and Culex quinquefasciatus. Our quantitative analysis of vector and non-vector species, demonstrates that the net effect of deforestation favors mosquitoes that serve as vectors of human disease, while the obverse holds true for non-vectors species. These results begin to unify our understanding of the relationship between deforestation and vector mosquitoes, an important step in quantifying how land use change, specifically deforestation, affects human risk of vector-borne disease.
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Affiliation(s)
| | - Amy Y Vittor
- Division of Infectious Diseases and Global Medicine, University of Florida, Gainesville, FL, USA
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38
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Cassone BJ, Kay RGG, Daugherty MP, White BJ. Comparative Transcriptomics of Malaria Mosquito Testes: Function, Evolution, and Linkage. G3 (BETHESDA, MD.) 2017; 7:1127-1136. [PMID: 28159865 PMCID: PMC5386861 DOI: 10.1534/g3.117.040089] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2016] [Accepted: 01/31/2017] [Indexed: 01/05/2023]
Abstract
Testes-biased genes evolve rapidly and are important in the establishment, solidification, and maintenance of reproductive isolation between incipient species. The Anopheles gambiae complex, a group of at least eight isomorphic mosquito species endemic to Sub-Saharan Africa, is an excellent system to explore the evolution of testes-biased genes. Within this group, the testes are an important tissue in the diversification process because hybridization between species results in sterile hybrid males, but fully fertile females. We conducted RNA sequencing of A. gambiae and A. merus carcass and testes to explore tissue- and species-specific patterns of gene expression. Our data provides support for transcriptional repression of X-linked genes in the male germline, which likely drives demasculinization of the X chromosome. Testes-biased genes predominately function in cellular differentiation and show a number of interesting patterns indicative of their rapid evolution, including elevated dN/dS values, low evolutionary conservation, poor annotation in existing reference genomes, and a high likelihood of differential expression between species.
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Affiliation(s)
- Bryan J Cassone
- Department of Biology, Brandon University, Manitoba R7A 6A9, Canada
| | - Raissa G G Kay
- Department of Entomology, University of California, Riverside, California 92521
- Graduate Program in Genetics, Genomics, and Bioinformatics, University of California, Riverside, California 92521
| | - Matthew P Daugherty
- Department of Entomology, University of California, Riverside, California 92521
| | - Bradley J White
- Department of Entomology, University of California, Riverside, California 92521
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39
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Love RR, Steele AM, Coulibaly MB, Traore SF, Emrich SJ, Fontaine MC, Besansky NJ. Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing. Mol Ecol 2016; 25:5889-5906. [PMID: 27759895 DOI: 10.1111/mec.13888] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2016] [Revised: 09/13/2016] [Accepted: 10/03/2016] [Indexed: 12/30/2022]
Abstract
The molecular mechanisms and genetic architecture that facilitate adaptive radiation of lineages remain elusive. Polymorphic chromosomal inversions, due to their recombination-reducing effect, are proposed instruments of ecotypic differentiation. Here, we study an ecologically diversifying lineage of Anopheles gambiae, known as the Bamako chromosomal form based on its unique complement of three chromosomal inversions, to explore the impact of these inversions on ecotypic differentiation. We used pooled and individual genome sequencing of Bamako, typical (non-Bamako) An. gambiae and the sister species Anopheles coluzzii to investigate evolutionary relationships and genomewide patterns of nucleotide diversity and differentiation among lineages. Despite extensive shared polymorphism and limited differentiation from the other taxa, Bamako clusters apart from the other taxa, and forms a maximally supported clade in neighbour-joining trees based on whole-genome data (including inversions) or solely on collinear regions. Nevertheless, FST outlier analysis reveals that the majority of differentiated regions between Bamako and typical An. gambiae are located inside chromosomal inversions, consistent with their role in the ecological isolation of Bamako. Exceptionally differentiated genomic regions were enriched for genes implicated in nervous system development and signalling. Candidate genes associated with a selective sweep unique to Bamako contain substitutions not observed in sympatric samples of the other taxa, and several insecticide resistance gene alleles shared between Bamako and other taxa segregate at sharply different frequencies in these samples. Bamako represents a useful window into the initial stages of ecological and genomic differentiation from sympatric populations in this important group of malaria vectors.
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Affiliation(s)
- R Rebecca Love
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.,Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Center, Notre Dame, IN, 46556, USA
| | - Aaron M Steele
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.,Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Mamadou B Coulibaly
- Malaria Research and Training Centre, Faculty of Medicine Pharmacy and Dentistry, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Sékou F Traore
- Malaria Research and Training Centre, Faculty of Medicine Pharmacy and Dentistry, University of Sciences, Techniques and Technologies of Bamako, Bamako, Mali
| | - Scott J Emrich
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.,Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Michael C Fontaine
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.,Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Center, Notre Dame, IN, 46556, USA.,Groningen Institute for Evolutionary Life Sciences (GELIFES), University of Groningen, Nijenborgh 7, 9747 AG, Groningen, The Netherlands
| | - Nora J Besansky
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.,Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Center, Notre Dame, IN, 46556, USA
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40
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McBride CS. Genes and Odors Underlying the Recent Evolution of Mosquito Preference for Humans. Curr Biol 2016; 26:R41-6. [PMID: 26766234 DOI: 10.1016/j.cub.2015.11.032] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Mosquito species that specialize in biting humans are few but dangerous. They include the African malaria vectors Anopheles gambiae and Anopheles coluzzii, as well as Aedes aegypti, the cosmopolitan vector of dengue, chikungunya, and yellow fever. These mosquitoes have evolved a remarkable innate preference for human odor that helps them find and bite us. Here I review what is known about this important evolutionary adaptation, from its historical documentation to its chemical and molecular basis.
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Affiliation(s)
- Carolyn S McBride
- Princeton Neuroscience Institute, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
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41
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Abstract
Anopheles melas is a member of the recently diverged An. gambiae species complex, a model for speciation studies, and is a locally important malaria vector along the West-African coast where it breeds in brackish water. A recent population genetic study of An. melas revealed species-level genetic differentiation between three population clusters. An. melas West extends from The Gambia to the village of Tiko, Cameroon. The other mainland cluster, An. melas South, extends from the southern Cameroonian village of Ipono to Angola. Bioko Island, Equatorial Guinea An. melas populations are genetically isolated from mainland populations. To examine how genetic differentiation between these An. melas forms is distributed across their genomes, we conducted a genome-wide analysis of genetic differentiation and selection using whole genome sequencing data of pooled individuals (Pool-seq) from a representative population of each cluster. The An. melas forms exhibit high levels of genetic differentiation throughout their genomes, including the presence of numerous fixed differences between clusters. Although the level of divergence between the clusters is on a par with that of other species within the An. gambiae complex, patterns of genome-wide divergence and diversity do not provide evidence for the presence of pre- and/or postmating isolating mechanisms in the form of speciation islands. These results are consistent with an allopatric divergence process with little or no introgression.
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42
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Kirkpatrick M. The Evolution of Genome Structure by Natural and Sexual Selection. J Hered 2016; 108:3-11. [PMID: 27388336 DOI: 10.1093/jhered/esw041] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Accepted: 06/28/2016] [Indexed: 11/13/2022] Open
Abstract
Progress on understanding how genome structure evolves is accelerating with the arrival of new genomic, comparative, and theoretical approaches. This article reviews progress in understanding how chromosome inversions and sex chromosomes evolve, and how their evolution affects species' ecology. Analyses of clines in inversion frequencies in flies and mosquitoes imply strong local adaptation, and roles for both over- and under dominant selection. Those results are consistent with the hypothesis that inversions become established when they capture locally adapted alleles. Inversions can carry alleles that are beneficial to closely related species, causing them to introgress following hybridization. Models show that this "adaptive cassette" scenario can trigger large range expansions, as recently happened in malaria mosquitoes. Sex chromosomes are the most rapidly evolving genome regions of some taxa. Sexually antagonistic selection may be the key force driving transitions of sex determination between different pairs of chromosomes and between XY and ZW systems. Fusions between sex-chromosomes and autosomes most often involve the Y chromosome, a pattern that can be explained if fusions are mildly deleterious and fix by drift. Sexually antagonistic selection is one of several hypotheses to explain the recent discovery that the sex determination system has strong effects on the adult sex ratios of tetrapods. The emerging view of how genome structure evolves invokes a much richer constellation of forces than was envisioned during the Golden Age of research on Drosophila karyotypes.
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Affiliation(s)
- Mark Kirkpatrick
- From the Department of Integrative Biology C-0990, University of Texas, Austin, TX 78712 USA (Kirkpatrick).
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43
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Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, Nolan T, Radune D, Sharakhova MV, Steele A, Timoshevskiy VA, Windbichler N, Zhang S, Hahn MW, Phillippy AM, Emrich SJ, Sharakhov IV, Tu ZJ, Besansky NJ. Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proc Natl Acad Sci U S A 2016; 113:E2114-23. [PMID: 27035980 PMCID: PMC4839409 DOI: 10.1073/pnas.1525164113] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Y chromosomes control essential male functions in many species, including sex determination and fertility. However, because of obstacles posed by repeat-rich heterochromatin, knowledge of Y chromosome sequences is limited to a handful of model organisms, constraining our understanding of Y biology across the tree of life. Here, we leverage long single-molecule sequencing to determine the content and structure of the nonrecombining Y chromosome of the primary African malaria mosquito, Anopheles gambiae We find that the An. gambiae Y consists almost entirely of a few massively amplified, tandemly arrayed repeats, some of which can recombine with similar repeats on the X chromosome. Sex-specific genome resequencing in a recent species radiation, the An. gambiae complex, revealed rapid sequence turnover within An. gambiae and among species. Exploiting 52 sex-specific An. gambiae RNA-Seq datasets representing all developmental stages, we identified a small repertoire of Y-linked genes that lack X gametologs and are not Y-linked in any other species except An. gambiae, with the notable exception of YG2, a candidate male-determining gene. YG2 is the only gene conserved and exclusive to the Y in all species examined, yet sequence similarity to YG2 is not detectable in the genome of a more distant mosquito relative, suggesting rapid evolution of Y chromosome genes in this highly dynamic genus of malaria vectors. The extensive characterization of the An. gambiae Y provides a long-awaited foundation for studying male mosquito biology, and will inform novel mosquito control strategies based on the manipulation of Y chromosomes.
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Affiliation(s)
- Andrew Brantley Hall
- The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Philippos-Aris Papathanos
- Section of Genomics and Genetics, Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy; Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Atashi Sharma
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Changde Cheng
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556
| | - Omar S Akbari
- Department of Entomology, Riverside Center for Disease Vector Research, Institute for Integrative Genome Biology, University of California, Riverside, CA 92521
| | - Lauren Assour
- Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556
| | - Nicholas H Bergman
- National Biodefense Analysis and Countermeasures Center, Frederick, MD 21702
| | - Alessia Cagnetti
- Section of Genomics and Genetics, Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy
| | - Andrea Crisanti
- Section of Genomics and Genetics, Department of Experimental Medicine, University of Perugia, 06132 Perugia, Italy; Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Tania Dottorini
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Elisa Fiorentini
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Roberto Galizi
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Jonathan Hnath
- National Biodefense Analysis and Countermeasures Center, Frederick, MD 21702
| | - Xiaofang Jiang
- The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Sergey Koren
- Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892
| | - Tony Nolan
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Diane Radune
- National Biodefense Analysis and Countermeasures Center, Frederick, MD 21702
| | - Maria V Sharakhova
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Laboratory of Evolutionary Cytogenetics, Tomsk State University, Tomsk 634050, Russia
| | - Aaron Steele
- Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556
| | - Vladimir A Timoshevskiy
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Nikolai Windbichler
- Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom
| | - Simo Zhang
- School of Informatics and Computing, Indiana University, Bloomington, IN 47405
| | - Matthew W Hahn
- School of Informatics and Computing, Indiana University, Bloomington, IN 47405; Department of Biology, Indiana University, Bloomington, IN 47405
| | - Adam M Phillippy
- Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892
| | - Scott J Emrich
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556; Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556
| | - Igor V Sharakhov
- The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Laboratory of Evolutionary Cytogenetics, Tomsk State University, Tomsk 634050, Russia;
| | - Zhijian Jake Tu
- The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Department of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Nora J Besansky
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556; Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556;
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44
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Houldcroft CJ, Underdown SJ. Neanderthal genomics suggests a pleistocene time frame for the first epidemiologic transition. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2016; 160:379-88. [PMID: 27063929 DOI: 10.1002/ajpa.22985] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Revised: 02/10/2016] [Accepted: 03/03/2016] [Indexed: 12/13/2022]
Abstract
High quality Altai Neanderthal and Denisovan genomes are revealing which regions of archaic hominin DNA have persisted in the modern human genome. A number of these regions are associated with response to infection and immunity, with a suggestion that derived Neanderthal alleles found in modern Europeans and East Asians may be associated with autoimmunity. As such Neanderthal genomes are an independent line of evidence of which infectious diseases Neanderthals were genetically adapted to. Sympathetically, human genome adaptive introgression is an independent line of evidence of which infectious diseases were important for AMH coming in to Eurasia and interacting with Neanderthals. The Neanderthals and Denisovans present interesting cases of hominin hunter-gatherers adapted to a Eurasian rather than African infectious disease package. Independent sources of DNA-based evidence allow a re-evaluation of the first epidemiologic transition and how infectious disease affected Pleistocene hominins. By combining skeletal, archaeological and genetic evidence from modern humans and extinct Eurasian hominins, we question whether the first epidemiologic transition in Eurasia featured a new package of infectious diseases or a change in the impact of existing pathogens. Coupled with pathogen genomics, this approach supports the view that many infectious diseases are pre-Neolithic, and the list continues to expand. The transfer of pathogens between hominin populations, including the expansion of pathogens from Africa, may also have played a role in the extinction of the Neanderthals and offers an important mechanism to understand hominin-hominin interactions well back beyond the current limits for aDNA extraction from fossils alone. Am J Phys Anthropol 160:379-388, 2016. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Charlotte J Houldcroft
- Division of Biological Anthropology, Department of Archaeology & Anthropology, University of Cambridge, Cambridge, CB2 3QG, UK.,Infection, Inflammation and Rheumatology Section, UCL Institute of Child Health, London, WC1N 1EH, UK
| | - Simon J Underdown
- Human Origins and Palaeoenvironmental Research Group (HOPE), Department of Anthropology & Geography, Oxford Brookes University, Oxford, OX3 0BP, UK
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Uyhelji HA, Cheng C, Besansky NJ. Transcriptomic differences between euryhaline and stenohaline malaria vector sibling species in response to salinity stress. Mol Ecol 2016; 25:2210-25. [PMID: 26945667 DOI: 10.1111/mec.13609] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2014] [Revised: 01/09/2016] [Accepted: 02/22/2016] [Indexed: 01/04/2023]
Abstract
Evolution of osmoregulatory systems is a key factor in the transition of species between fresh- and saltwater habitats. Anopheles coluzzii and Anopheles merus are stenohaline and euryhaline malaria vector mosquitoes belonging to a larger group of sibling species, the Anopheles gambiae complex, which radiated in Africa within the last 2 million years. Comparative ecological genomics of these vector species can provide insight into the mechanisms that permitted the rapid radiation of this species complex into habitats of contrasting salinity. Here, we use RNA-Seq to investigate gene expression differences between An. coluzzii and An. merus after briefly exposing both young and old larval instars of each species to either saltwater (SW) or freshwater (FW). Our study aims to identify candidate genes and pathways responsible for the greater SW tolerance of An. merus. Our results are congruent with the ability of gene induction to mediate salinity tolerance, with both species showing increasing amounts of differential gene expression between SW and FW as salt concentrations increase. Besides ion transporters such as AgAE2 that may serve as effectors for osmoregulation, we also find mitogen-activated protein kinases that may serve in a phosphorylation signalling pathway responding to salinity, and report potential cross-talk between the mosquito immune response and osmoregulation. This study provides a key step towards applying the growing molecular knowledge of these malaria vectors to improve understanding of their ecological tolerances and habitat occupancy.
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Affiliation(s)
- Hilary A Uyhelji
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA.,Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.,Functional Genomics Team, Civil Aerospace Medical Institute, Federal Aviation Administration, Oklahoma City, OK, 73169, USA
| | - Changde Cheng
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA.,Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA
| | - Nora J Besansky
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, 46556, USA.,Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA
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Russell TL, Beebe NW, Bugoro H, Apairamo A, Collins FH, Cooper RD, Lobo NF, Burkot TR. Anopheles farauti is a homogeneous population that blood feeds early and outdoors in the Solomon Islands. Malar J 2016; 15:151. [PMID: 26960327 PMCID: PMC4784415 DOI: 10.1186/s12936-016-1194-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Accepted: 02/26/2016] [Indexed: 12/02/2022] Open
Abstract
BACKGROUND In the 1970s, Anopheles farauti in the Solomon Island responded to indoor residual spraying with DDT by increasingly feeding more outdoors and earlier in the evening. Although long-lasting insecticidal nets (LLINs) are now the primary malaria vector control intervention in the Solomon Islands, only a small proportion of An. farauti still seek blood meals indoors and late at night where they are vulnerable to being killed by contract with the insecticides in LLINs. The effectiveness of LLINs and indoor residual spraying (IRS) in controlling malaria transmission where the vectors are exophagic and early biting will depend on whether the predominant outdoor or early biting phenotypes are associated with a subpopulation of the vectors present. METHODS Mark-release-recapture experiments were conducted in the Solomon Islands to determine if individual An. farauti repeat the same behaviours over successive feeding cycles. The two behavioural phenotypes examined were those on which the WHO recommended malaria vector control strategies, LLINs and IRS, depend: indoor and late night biting. RESULTS Evidence was found for An. farauti being a single population regarding time (early evening or late night) and location (indoor or outdoor) of blood feeding. Individual An. farauti did not consistently repeat behavioural phenotypes expressed for blood feeding (e.g., while most mosquitoes that fed early and outdoors, and would repeat those behaviours, some fed late at night or indoors in the next feeding cycle). CONCLUSIONS The finding that An. farauti is a homogeneous population is significant, because during the multiple feeding cycles required to complete the extrinsic incubation period, many individual female anophelines will enter houses late at night and be exposed to the insecticides used in LLINs or IRS. This explains, in part, the control that LLINs and IRS have exerted against a predominantly outdoor feeding vector, such as An. farauti. These findings may be relevant to many of the outdoor feeding vectors that dominate transmission in much of the malaria endemic world and justifies continued use of LLINs. However, the population-level tendency of mosquitoes to feed outdoors and early in the evening does require complementary interventions to accelerate malaria control towards elimination.
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Affiliation(s)
- Tanya L Russell
- Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, QLD, 4870, Australia.
| | - Nigel W Beebe
- School of Biological Sciences, University of Queensland, St. Lucia, QLD, 4068, Australia.
- CSIRO, Dutton Park, Brisbane, QLD, 4102, Australia.
| | - Hugo Bugoro
- National Vector Borne Disease Control Programme, Ministry of Health, Honiara, Solomon Islands.
| | - Allan Apairamo
- National Vector Borne Disease Control Programme, Ministry of Health, Honiara, Solomon Islands.
| | - Frank H Collins
- Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.
| | - Robert D Cooper
- Australian Army Malaria Institute, Gallipoli Barracks, Enoggera, 4052, Australia.
| | - Neil F Lobo
- Department of Biological Sciences, Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN, 46556, USA.
| | - Thomas R Burkot
- Australian Institute of Tropical Health and Medicine, James Cook University, Cairns, QLD, 4870, Australia.
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Niang A, Epopa PS, Sawadogo SP, Maïga H, Konaté L, Faye O, Dabiré RK, Tripet F, Diabaté A. Does extreme asymmetric dominance promote hybridization between Anopheles coluzzii and Anopheles gambiae s.s. in seasonal malaria mosquito communities of West Africa? Parasit Vectors 2015; 8:586. [PMID: 26559354 PMCID: PMC4642620 DOI: 10.1186/s13071-015-1190-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Accepted: 10/31/2015] [Indexed: 03/13/2023] Open
Abstract
Background Anopheles gambiae s.s. and An. coluzzii are two of the most important malaria vector species in sub-Saharan Africa. These recently-diverged sibling species do not exhibit intrinsic post-zygotic barriers to reproduction and are thought to be separated by strong assortative mating combined with selection against hybrids. At present, little is known about the ecological conditions that determine hybridization and introgression between these cryptic taxa. Methods Swarm segregation and assortative mating were studied in Western Burkina Faso in the villages of Vallée du Kou (VK7) and Soumousso which differed in terms of which sibling species was much rarer than the other, and in Bana where both occurred in similar proportions. Swarms and pairs in copula were collected and genotyped, the proportion of intra and interspecific mating determined, and interspecific sperm transfer checked genetically. Females were collected through larval and adult indoor collections and genotyped or sexed-and-genotyped via a novel multiplex PCR. Results A total of 3,687 males and 220 females were collected and genotyped from 109 swarms. Only 3 swarms were composed of males from both species, and these were from the village of VK7 where An. gambiae s.s. was comparatively rare. Mixed-species pairs captured in copula were only detected in that area and made for 3.62 % and 100 % of mating pairs involving An. coluzzii and An. gambiae s.s. individuals, respectively. The high An. gambiae s.s. cross-mating rate was mirrored by high rates of hybridizations estimated from female larvae and adults indoor collections. This contrasted with Soumousso, where despite being much less common than An. gambiae s.s., An. coluzzii males did not form mixed swarms, females were not found in interspecific swarms or copula and hybridization rates were low in both sibling species. Conclusions These data suggest that ecological conditions leading to rare An. gambiae s.s. in populations dominated by An. coluzzii may promote a breakdown of spatial swarm segregation and assortative mating between the two species. The lower overall hybridization rates observed at the larval and adult indoor stages compared to cross-mating rates support the idea that post-mating selection processes acting against hybrids may occur mostly prior to and/or at the early larval stages.
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Affiliation(s)
- Abdoulaye Niang
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso.
| | - Patric S Epopa
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso.
| | - Simon P Sawadogo
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso.
| | - Hamidou Maïga
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso.
| | - Lassana Konaté
- Laboratoire d'Ecologie Vectorielle et Parasitaire, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal.
| | - Ousmane Faye
- Laboratoire d'Ecologie Vectorielle et Parasitaire, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal.
| | - Roch K Dabiré
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso.
| | - Frédéric Tripet
- Centre for Applied Entomology and Parasitology, School of Life Sciences, Keele University, Staffordshire, UK.
| | - Abdoulaye Diabaté
- Institut de Recherche en Sciences de la Santé, Bobo-Dioulasso, Burkina Faso.
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Tene Fossog B, Ayala D, Acevedo P, Kengne P, Ngomo Abeso Mebuy I, Makanga B, Magnus J, Awono-Ambene P, Njiokou F, Pombi M, Antonio-Nkondjio C, Paupy C, Besansky NJ, Costantini C. Habitat segregation and ecological character displacement in cryptic African malaria mosquitoes. Evol Appl 2015; 8:326-45. [PMID: 25926878 PMCID: PMC4408144 DOI: 10.1111/eva.12242] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2014] [Accepted: 12/08/2014] [Indexed: 01/09/2023] Open
Abstract
Understanding how divergent selection generates adaptive phenotypic and population diversification provides a mechanistic explanation of speciation in recently separated species pairs. Towards this goal, we sought ecological gradients of divergence between the cryptic malaria vectors Anopheles coluzzii and An. gambiae and then looked for a physiological trait that may underlie such divergence. Using a large set of occurrence records and eco-geographic information, we built a distribution model to predict the predominance of the two species across their range of sympatry. Our model predicts two novel gradients along which the species segregate: distance from the coastline and altitude. Anopheles coluzzii showed a ‘bimodal’ distribution, predominating in xeric West African savannas and along the western coastal fringe of Africa. To test whether differences in salinity tolerance underlie this habitat segregation, we assessed the acute dose–mortality response to salinity of thirty-two larval populations from Central Africa. In agreement with its coastal predominance, Anopheles coluzzii was overall more tolerant than An. gambiae. Salinity tolerance of both species, however, converged in urban localities, presumably reflecting an adaptive response to osmotic stress from anthropogenic pollutants. When comparing degree of tolerance in conjunction with levels of syntopy, we found evidence of character displacement in this trait.
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Affiliation(s)
- Billy Tene Fossog
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1, UM2, CNRS 5290, IRD 224) Montpellier, France ; Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCEAC) Yaoundé, Cameroon ; Department of Animal Biology, Faculty of Sciences, University of Yaoundé I Yaoundé, Cameroon
| | - Diego Ayala
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1, UM2, CNRS 5290, IRD 224) Montpellier, France ; Eck Institute for Global Health & Department of Biological Sciences, University of Notre Dame Notre Dame, IN, USA ; Centre International de Recherches Médicales de Franceville (CIRMF) Franceville, Gabon
| | - Pelayo Acevedo
- SaBio, Instituto de Investigación en Recursos Cinegéticos (IREC), CSIC-UCLM-JCCM Ciudad Real, Spain
| | - Pierre Kengne
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1, UM2, CNRS 5290, IRD 224) Montpellier, France ; Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCEAC) Yaoundé, Cameroon
| | | | - Boris Makanga
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1, UM2, CNRS 5290, IRD 224) Montpellier, France ; Centre International de Recherches Médicales de Franceville (CIRMF) Franceville, Gabon ; Institut de Recherche en Ecologie Tropicale (IRET) Libreville, Gabon
| | - Julie Magnus
- Centre International de Recherches Médicales de Franceville (CIRMF) Franceville, Gabon
| | - Parfait Awono-Ambene
- Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCEAC) Yaoundé, Cameroon
| | - Flobert Njiokou
- Department of Animal Biology, Faculty of Sciences, University of Yaoundé I Yaoundé, Cameroon
| | - Marco Pombi
- Sezione di Parassitologia, Dipartimento di Sanità Pubblica e Malattie Infettive, Università di Roma 'La Sapienza' Rome, Italy
| | - Christophe Antonio-Nkondjio
- Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCEAC) Yaoundé, Cameroon
| | - Christophe Paupy
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1, UM2, CNRS 5290, IRD 224) Montpellier, France ; Centre International de Recherches Médicales de Franceville (CIRMF) Franceville, Gabon
| | - Nora J Besansky
- Eck Institute for Global Health & Department of Biological Sciences, University of Notre Dame Notre Dame, IN, USA
| | - Carlo Costantini
- Institut de Recherche pour le Développement (IRD), UMR MIVEGEC (UM1, UM2, CNRS 5290, IRD 224) Montpellier, France ; Laboratoire de Recherche sur le Paludisme, Organisation de Coordination pour la lutte contre les Endémies en Afrique Centrale (OCEAC) Yaoundé, Cameroon
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49
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Kirkpatrick M, Barrett B. Chromosome inversions, adaptive cassettes and the evolution of species' ranges. Mol Ecol 2015; 24:2046-55. [PMID: 25583098 DOI: 10.1111/mec.13074] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Revised: 12/22/2014] [Accepted: 12/30/2014] [Indexed: 01/28/2023]
Abstract
A chromosome inversion can spread when it captures locally adapted alleles or when it is introduced into a species by hybridization with adapted alleles that were previously absent. We present a model that shows how both processes can cause a species range to expand. Introgression of an inversion that carries novel, locally adapted alleles is a particularly powerful mechanism for range expansion. The model supports the earlier proposal that introgression of an inversion triggered a large range expansion of a malaria mosquito. These results suggest a role for inversions as cassettes of genes that can accelerate adaptation by crossing species boundaries, rather than protecting genomes from introgression.
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Affiliation(s)
- Mark Kirkpatrick
- Department of Integrative Biology, University of Texas, Austin, TX, 78712, USA
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50
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Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, Slotman MA, Emrich SJ, Hahn MW, Besansky NJ. Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science 2015; 347:1258524. [PMID: 25431491 PMCID: PMC4380269 DOI: 10.1126/science.1258524] [Citation(s) in RCA: 356] [Impact Index Per Article: 39.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Introgressive hybridization is now recognized as a widespread phenomenon, but its role in evolution remains contested. Here, we use newly available reference genome assemblies to investigate phylogenetic relationships and introgression in a medically important group of Afrotropical mosquito sibling species. We have identified the correct species branching order to resolve a contentious phylogeny and show that lineages leading to the principal vectors of human malaria were among the first to split. Pervasive autosomal introgression between these malaria vectors means that only a small fraction of the genome, mainly on the X chromosome, has not crossed species boundaries. Our results suggest that traits enhancing vectorial capacity may be gained through interspecific gene flow, including between nonsister species.
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Affiliation(s)
- Michael C Fontaine
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA
| | - James B Pease
- Department of Biology, Indiana University, Bloomington, IN 47405, USA
| | - Aaron Steele
- Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Robert M Waterhouse
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, 32 Vassar Street, Cambridge, MA 02139, USA. The Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA. Department of Genetic Medicine and Development, University of Geneva Medical School, rue Michel-Servet 1, 1211 Geneva, Switzerland. Swiss Institute of Bioinformatics, rue Michel-Servet 1, 1211 Geneva, Switzerland
| | - Daniel E Neafsey
- The Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA
| | - Igor V Sharakhov
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA. The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Xiaofang Jiang
- The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Andrew B Hall
- The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA
| | - Flaminia Catteruccia
- Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115, USA. Dipartimento di Medicina Sperimentale e Scienze Biochimiche, Università degli Studi di Perugia, Perugia, Italy
| | - Evdoxia Kakani
- Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115, USA. Dipartimento di Medicina Sperimentale e Scienze Biochimiche, Università degli Studi di Perugia, Perugia, Italy
| | - Sara N Mitchell
- Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115, USA
| | - Yi-Chieh Wu
- Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, 32 Vassar Street, Cambridge, MA 02139, USA
| | - Hilary A Smith
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA
| | - R Rebecca Love
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Mara K Lawniczak
- Department of Life Sciences, Imperial College London, South Kensington Campus, London SW7 2AZ, UK
| | - Michel A Slotman
- Department of Entomology, Texas A&M University, College Station, TX 77843, USA
| | - Scott J Emrich
- Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA. Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, IN 46556, USA
| | - Matthew W Hahn
- Department of Biology, Indiana University, Bloomington, IN 47405, USA. School of Informatics and Computing, Indiana University, Bloomington, IN 47405, USA.
| | - Nora J Besansky
- Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA.
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