SNAPSHOT USA 2021: A third coordinated national camera trap survey of the United States

SNAPSHOT USA is a multicontributor, long-term camera trap survey designed to survey mammals across the United States. Participants are recruited through community networks and directly through a website application (https://www.snapshot-usa.org/). The growing Snapshot dataset is useful, for example, for tracking wildlife population responses to land use, land cover, and climate changes across spatial and temporal scales. Here we present the SNAPSHOT USA 2021 dataset, the third national camera trap survey across the US. Data were collected across 109 camera trap arrays and included 1711 camera sites. The total effort equaled 71,519 camera trap nights and resulted in 172,507 sequences of animal observations. Sampling effort varied among camera trap arrays, with a minimum of 126 camera trap nights, a maximum of 3355 nights, a median 546 nights, and a mean 656 ± 431 nights. This third dataset comprises 51 camera trap arrays that were surveyed during 2019, 2020, and 2021, along with 71 camera trap arrays that were surveyed in 2020 and 2021. All raw data and accompanying metadata are stored on Wildlife Insights (https://www.wildlifeinsights.org/), and are publicly available upon acceptance of the data papers. SNAPSHOT USA aims to sample multiple ecoregions in the United States with adequate representation of each ecoregion according to its relative size. Currently, the relative density of camera trap arrays varies by an order of magnitude for the various ecoregions (0.22-5.9 arrays per 100,000 km2), emphasizing the need to increase sampling effort by further recruiting and retaining contributors. There are no copyright restrictions on these data. We request that authors cite this paper when using these data, or a subset of these data, for publication. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the US Government.

Soil greenhouse gas emissions from drained and rewetted agricultural bare peat mesocosms are linked to geochemistry

In view of climate considerations regarding the management of peatlands, there is a need to assess whether rewetting can mitigate greenhouse gas (GHG) emissions, and notably how site-specific soil-geochemistry will influence differences in emission magnitudes. However, there are inconsistent results regarding the correlation of soil properties with heterotrophic respiration (Rh) of carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O) from bare peat. In this study, we determined 1) soil-, and site-specific geochemical components as drivers for emissions from Rh on five Danish fens and bogs, and 2) emission magnitudes under drained and rewetted conditions. For this, a mesocosm experiment was performed under equal exposure to climatic conditions and water table depths controlled to either -40 cm, or -5 cm. For the drained soils, we found that annual cumulative emissions, accounting for all three gases, were dominated by CO2, contributing with, on average, 99 % to a varying global warming potential (GWP) of 12.2-16.9 t CO2eq ha-1 yr-1. Rewetting lowered annual cumulative emissions from Rh by 3.2-5.1 t CO2eq ha-1 yr-1 for fens and bogs, respectively, despite a high variability of site-specific CH4 emissions, contributing with 0.3-3.4 t CO2 ha-1 yr-1 to the GWP. Overall, analyses using generalized additive models (GAM) showed that emission magnitudes were well explained by geochemical variables. Under drained conditions, significant soil-specific predictor variables for CO2 flux magnitudes were pH, phosphorus (P), and the soil substrate's relative water holding capacity (WHC). When rewetted, CO2 and CH4 emissions from Rh were affected by pH, WHC, as well as contents of P, total carbon and nitrogen. In conclusion, our results found the highest GHG reduction on fen peatlands, further highlighting that peat nutrient status and acidity, and the potential availability of alternative electron acceptors, might be used as proxies for prioritising peatland areas for GHG mitigation efforts by rewetting.

CLINICAL AND SUBCLINICAL CYTAUXZOON FELIS INFECTIONS IN DOMESTIC CATS FROM A RECENTLY IDENTIFIED ENDEMIC REGION

Cytauxzoon felis is a tick-transmitted intraerythrocytic apicomplexan infecting felids in the southeastern and midwestern United States. Bobcats (Lynx rufus) are the natural wildlife reservoir of C. felis, where in enzootic areas prevalence can reach 100%. Domestic cats can be subclinically infected with C. felis or can develop cytauxzoonosis. Two studies have documented the presence of C. felis in domestic cats in Illinois; these studies have shown a limited number of cases submitted to specialty labs. During 2014-2018, we obtained blood samples collected by veterinary staff from 514 cats that were apparently healthy and 74 cats that were suspected of cytauxzoonosis. These samples were screened using a sensitive, nested PCR to detect the presence of C. felis DNA. We herein document frequent occurrences of cytauxzoonosis (8-15 cases/year from 4 veterinary clinics) and 12.5% prevalence of subclinical infections in southern Illinois, a locality showing a sharp increase in cases of cytauxzoonosis. Our results suggest a high risk of cytauxzoonosis in southern Illinois, despite only recently being recognized in the area. We found no specific risk factors for cytauxzoonosis or subclinical infections in this location. In addition, cases of cytauxzoonosis occur every month of the year (with the highest frequency in summer) and therefore tick prevention should be used in domestic cats in enzootic regions throughout the year.

Influence of natal habitat preference on habitat selection during extra-home range movements in a large ungulate

Natal habitat preference induction (NHPI) occurs when animals exhibit a preference for new habitat that is similar to that which they experienced in their natal environment, potentially leading to post-dispersal success. While the study of NHPI is typically focused on post-settlement home ranges, we investigated how this behavior may manifest during extra-home range movements (EHRMs), both to identify exploratory prospecting behavior and assess how natal habitat cues may influence path selection before settlement. We analyzed GPS collar relocation data collected during 79 EHRMs made by 34 juvenile and subadult white-tailed deer (Odocoileus virginianus) across an agricultural landscape with highly fragmented forests in Illinois, USA. We developed a workflow to measure multidimensional natal habitat dissimilarity for each EHRM relocation and fit step-selection functions to evaluate whether natal habitat similarity explained habitat selection along movement paths. Across seasons, selection for natal habitat similarity was generally weak during excursive movements, but strong during dispersals, indicating that NHPI is manifested in dispersal habitat selection in this study system and bolstering the hypothesis that excursive movements differ functionally from dispersal. Our approach for extending the NHPI hypothesis to behavior during EHRMs can be applied to a variety of taxa and can expand our understanding of how individual behavioral variation and early life experience may shape connectivity and resistance across landscapes.

Integrating presence-only and occupancy data to model habitat use for the northernmost population of jaguars

Species distribution models (SDMs) have become an essential tool for the management and conservation of imperiled species. However, many at-risk species are rare and characterized by limited data on their spatial distribution and habitat relationships. This has led to the development of SDMs that integrate multiple types and sources of data to leverage more information and provide improved predictions of habitat associations. We developed a novel integrated species distribution model to predict habitat suitability for jaguars (Panthera onca) in the border region between northern Mexico and the southwestern USA. Our model combined presence-only and occupancy data to identify key environmental correlates, and we used model results to develop a probability of use map. We adopted a logistic regression modeling framework, which we found to be more straightforward and less computationally intensive to fit than Poisson point process-based models. Model results suggested that high terrain ruggedness and the presence of riparian vegetation were most strongly related to habitat use by jaguars in our study region. Our best model, on average, predicted that there is currently 25,463 km² of usable habitat in our study region. The United States portion of the study region, which makes up 38.6% of the total area, contained 40.6% of the total usable habitat. Even though there have been few detections of jaguars in the southwestern USA in recent decades, our results suggest that protection of currently suitable habitats, along with increased conservation efforts, could significantly contribute to the recovery of jaguars in the USA.

Legacy and emerging flame retardants in sharks from the Western North Atlantic Ocean

Following the discontinuation of commercial polybrominated diphenyl ether (PBDE) mixtures, a variety of alternative flame retardants (FRs) have been developed and employed. To understand the contamination status of these emerging FRs in marine fish and wildlife, we investigated their bioaccumulation in four shark species, including shortfin mako shark (Isurus oxyrhinchus; n = 26), porbeagle (Lamna nasus; n = 4), sandbar shark (Carcharhinus plumbeus; n = 6), and common thresher (Alopias vulpinus; n = 4), from coastal and offshore waters of the western North Atlantic Ocean. Median concentrations of emerging FRs, including dechlorane analogues (i.e., dechlorane plus, Dec-602, -603, and - 604), tetrabromo-o-chlorotoluene (TBCT), 1,2-bis(2,4,6-tribromophenoxy)ethane (BTBPE), and hexabromobenzene (HBBZ), ranged from 1.4-7.4, 10.2-22.4, 1.0-16.7, and 4.1-17.7 ng/g lipid weight (lw), respectively. Although concentrations of emerging FRs were generally 1-2 orders of magnitude lower than those of legacy FRs (i.e., PBDEs, 312-800 ng/g lw and hexabromocyclododecane or HBCDD, 17.2-99.3 ng/g lw), they were detected in more than 80% of the shark livers. Analysis of available biological data indicated that fork length significantly correlated with the concentrations of ΣPBDEs, HBCDD, ΣDechloranes or TBCT in shortfin mako livers. This indicates that longer-term exposure likely results in elevated FR concentrations in sharks. Our findings suggest likely exposure of western North Atlantic fish and wildlife to several emerging FRs, including dechloranes, BTBPE, HBBZ, and TBCT. Additional studies are needed to better elucidate their potential risks to fish and wildlife as well as the variety of environmental and biological factors influencing these risks.

Asymmetrical intraguild interactions with coyotes, red foxes, and domestic dogs may contribute to competitive exclusion of declining gray foxes

Species coexistence is governed by availability of resources and intraguild interactions including strategies to reduce ecological overlap. Gray foxes are dietary generalist mesopredators expected to benefit from anthropogenic disturbance, but populations have declined across the midwestern USA, including severe local extirpation rates coinciding with high coyote and domestic dog occurrence and low red fox occurrence. We used data from a large‐scale camera trap survey in southern Illinois, USA to quantify intraguild spatial and temporal interactions among the canid guild including domestic dogs. We used a two‐species co‐occurrence model to make pairwise assessments of conditional occupancy and detection rates. We also estimated temporal activity overlap among species and fit a fixed‐effects hierarchical community occupancy model with the four canid species. We partitioned the posterior distributions to compare gray fox occupancy probabilities conditional on estimated state of combinations of other species to assess support for hypothesized interactions. We found no evidence of broadscale avoidance among native canids and conclude that spatial and temporal segregation were limited by ubiquitous human disturbance. Mean guild richness was two canid species at a site and gray fox occupancy was greater when any combination of sympatric canids was also present, setting the stage for competitive exclusion over time. Domestic dogs may amplify competitive interactions by increasing canid guild size to the detriment of gray foxes. Our results suggest that while human activities can benefit some mesopredators, other species such as gray foxes may serve as bellwethers for habitat degradation with trophic downgrading and continued anthropogenic homogenization.

Three new species of Cytauxzoon in European wild felids

Protists of the genus Cytauxzoon infect a wide variety of wild and domestic felids worldwide. While the American Cytauxzoon felis has been well described, data on the European isolates of Cytauxzoon are still scant. The aim of the current study was to determine the genetic diversity of European Cytauxzoon spp. in wild felids across Europe by analyzing one nuclear and two mitochondrial genes, along with representative complete mitochondrial genomes. Overall, 106 biological samples from wild felids (92 from Felis silvestris and 14 from Lynx lynx) from Germany, Romania, Czech Republic, and Luxembourg were collected and screened for the presence of Cytauxzoon spp. using nested PCR protocols, targeting the highly conserved 18S rDNA, mitochondrial cytochrome b (CytB) and cytochrome c oxidase subunit I (COI) genes. Furthermore, 18 previously confirmed wild felid biological samples from Europe, and comparative material from USA positive for C. felis, were included in the study. In 18S rDNA sequences analyses, Cytauxzoon spp. from felids formed two separate clades of New World and Old World isolates, with a low inner diversity of the European clade. In contrast to 18S rDNA, the phylogenetic analyses of CytB and COI genes affirmatively revealed three highly supported clades, resulting in three defined genotypes. Similar intra- and interspecific variability of CytB and COI genes was observed in the case of different Babesia spp. Considering geography, host species and analyses of three genes, we conclude that the three detected genotypes of Cytauxzoon in European wild felids represent three new species, which we herein describe.

Within-Season Changes in Cytauxzoon felis Parasitemia in Bobcats

Cytauxzoon felis is a pathogen responsible for cytauxzoonosis, a highly fatal disease in domestic cats. Although most studies of C. felis have focused on this parasite in domestic cats, bobcats are the reservoir host. In stark contrast, there is little information relative to the progression of C. felis infections in bobcats. We studied bobcats in southern Illinois during 2014-2017 to evaluate which environmental factors (i.e., ambient temperature; number of daylight hours; trapping year, month, and day) influenced C. felis parasitemia levels. Mean ambient temperature at 1 wk and 2 wk prior to sampling was associated with increased parasitemia levels. Vector activity intensifies with higher temperatures, suggesting that increased parasitemia levels are an adaptation to facilitate transmission.

Low-intensity monitoring of small-mammal habitat associations and species interactions in an urban forest-preserve network

Abstract ContextAnthropogenic landscape modification and fragmentation result in loss of species and can alter ecosystem function. Assessment of the ecological value of urban reserve networks requires baseline and continued monitoring. However, depending on the desired indicators and parameters, effective monitoring can involve extensive sampling that is often financially or logistically infeasible. AimsWe employed a low-intensity, mixed-detector survey design to monitor the small-mammal community across a network of 53 fragmented forest preserves (225 sites) in a highly urbanised landscape in the Chicago metropolitan area from August to October, 2009–2012. MethodsWe used a sequential process to fit single-season occupancy and pairwise co-occurrence models for six common small mammal species to evaluate habitat associations and interspecific interactions. Key resultsShrew species and meadow voles occurred more often in open canopy-associated habitats, whereas occupancy was greater for eastern chipmunks, grey squirrels and white-footed mice in closed-canopy habitats. Habitat associations were complicated by negative pairwise interactions, resulting in reduced occurrence of meadow voles when predatory short-tailed shrews were present and lower occupancy rates of white-footed mouse when chipmunk competitors where present. White-footed mice co-occurred with short-tailed shrews, but detection of white-footed mice was lower when either eastern chipmunks or short-tailed shrews were present, suggesting that densities of these species could be inversely related. ConclusionsWe found evidence for both habitat segregation and interspecific interactions among small mammal species, by using low-intensity sampling across the reserve network. Thus, our sampling and analysis approach allowed for adequate assessment of the habitat associations and species interactions within a small-mammal community. ImplicationsOur findings demonstrated the utility of this monitoring strategy and community as bioindicators for urban-reserve networks. The approach described holds promise for efficient monitoring of reserve networks in fragmented landscapes, critical as human population densities and urbanisation increase, and we discuss how adaptive sampling methods could be incorporated to further benefit conservation efforts.

Spatial ecology of river otters in a human-modified landscape

River otter populations have expanded across much of their historical range, including in Illinois where they were reintroduced from 1994 to 1997. These expanding populations are recolonizing a wide range of landscapes with different levels of human modification, which could influence how river otters use space in relation to habitat characteristics and each other. Our objectives were to quantify 1) home ranges and core areas, 2) sociality, and 3) habitat selection across all available habitats and within home ranges (second- and third-order selection, respectively) of 22 radiomarked river otters (Lontra canadensis) in southern Illinois during 2014–2016. Our study area contained a diverse mix of forest, agriculture, aquatic and wetland habitats, and a range of urban development intensity. We examined sociality using the frequency at which individuals were located < 25 m from a conspecific and compared home-range overlap among individuals based on sex. Habitat selection at the second and third order was analyzed using an eigen-analysis of selection ratios based on landcover categories. Similar to other studies, male river otters had > 2-fold larger home ranges and core areas than females in southern Illinois. Several lines of evidence indicated males were more social than females. Males were located close to a conspecific more frequently than were females, and overlap of home ranges and core areas among males was greater than it was among females or between sexes. As observed in other landscapes, river otters strongly selected herbaceous and wooded wetlands at both second- and third-order scales. River otters selected terrestrial cover types with vegetative cover potentially due to shelter or prey availability. Forests were selected over crop fields at the third-order scale, which was consistent with studies using sign surveys. River otters in our study had home ranges containing 0–40% developed land cover, but we found no evidence that otters living in more developed areas used their home ranges more selectively. River otters in this landscape were plastic in regard to social behavior and habitat selection, highlighting their generalist nature and providing insight into their ability to successfully recolonize areas of the Midwest with sufficient vegetative cover and aquatic habitat, among other factors.

Maternal Transfer of Flame Retardants in Sharks from the Western North Atlantic Ocean

The present work represents a comprehensive study of in utero maternal transfer of legacy and emerging flame retardants (FRs) in marine predators. We analyzed liver tissues from pregnant sharks of five viviparous species, including blacknose shark ( Carcharhinus acronotus; n = 12), blacktip shark ( Carcharhinus limbatus; n = 2), bonnethead ( Sphyrna tiburo; n = 2), Atlantic sharpnose shark ( Rhizoprionodon terraenovae; n = 2), and spinner shark ( Carcharhinus brevipinna; n = 2), as well as their embryos ( n = 84 in total from five species), collected from the western North Atlantic Ocean. Concentrations of frequently detected emerging FRs in adult female blacknose sharks were determined to be 6.1-83.3 ng/g lipid weight (lw) for dechlorane analogues, 2.5-29.8 ng/g lw for tetrabromo- o-chlorotoluene, and nondetection -32.6 ng/g lw for hexabromobenzene. These concentrations were 1-2 orders of magnitude lower than those of legacy polybrominated diphenyl ether flame retardants (85.7-398 ng/g lw). Similar contamination profiles were also found in the other four species, although FR concentrations varied in different species. A total of 21 FRs were commonly found in developing embryos of female sharks from five species, demonstrating maternal transfer in utero. The maternal transfer ratio (i.e., ratio of the mean litter concentration to their mother's concentration) determined in blacknose shark mother/embryo groups for each FR chemical was negatively associated with its octanol-water partition coefficient. Our work lays a solid foundation for future investigation of the underlying mechanisms of in utero transfer and additional physical or chemical factors that affect maternal transfer.

A landscape genetic analysis of swamp rabbits (Sylvilagus aquaticus) suggests forest canopy cover enhances gene flow in an agricultural matrix

Habitat loss and fragmentation pose a continued and immediate threat to wildlife and create a persistent need for ecological information at the landscape scale to guide conservation efforts. Landscape features influence population connectivity for many species and genetic analyses can be employed to determine which of these features are most important. Because population connectivity through dispersal is important to the persistence of swamp rabbits (Sylvilagus aquaticus (Bachman, 1837)) at the northern edge of their range, we used a landscape genetic approach to relate gene flow to landscape features that may impact dispersal success. We tested resistance values for attributes of land cover, watercourse corridors, canopy cover, and roads and used causal modeling and redundancy analysis to relate these representations of landscapes to genetic distance for swamp rabbits in southern Illinois, USA. Models that included canopy cover had the strongest correlations with genetic distance and were supported by our methods whereas other models were not. We concluded that high tree canopy cover enhances gene flow and landscape connectivity for swamp rabbits in southern Illinois. Our study provides important empirical evidence that landscape variables may impact the habitat connectivity of swamp rabbits. Preserving dispersal routes for swamp rabbits should focus on improving canopy cover, in both bottomland and upland, to connect suitable habitat.

Chronic Cytauxzoon felis infections in wild-caught bobcats (Lynx rufus)

Cytauxzoon felis, and the resulting disease, cytauxzoonosis, is an emerging threat to domestic cats in the Midwest and Southeastern United States. Domestic cats that survive cytauxzoonosis (or are subclinically infected) are chronically infected with C. felis, yet to date, there is no information relative to chronic infections in bobcats, the natural reservoir. Over a period of 3.5 years (2014-2017), we captured and re-captured 5 bobcats in southern Illinois. One bobcat was captured each year of trapping, 1 was caught in the first and third year and 3 were recaptured approximately 1 year apart. We screened bobcats for the presence of C. felis using a nested PCR that amplified the nuclear small subunit (SSU) 18S rRNA. In addition, we amplified and sequenced the internal transcribed spacers 1 and 2 (ITS1 and ITS2) to detect if the strains of C. felis in each bobcat were consistent over time. All bobcats were positive for C. felis at the initial and subsequent capture(s). Bobcats that were PCR-positive for C. felis had blood smears screened for the presence of C. felis; all PCR-positive bobcats had detectable parasites in blood smears. The strains of C. felis present were consistent each year in 4 of 5 bobcats indicating these bobcats remained infected during this period. One bobcat appeared to be infected with a different strain based on a polymorphism at a nucleotide in ITS1. Our study provides important details of the epizootiology of C. felis: bobcats are chronically infected and are not immune to reinfection with new strains of C. felis.

Trypanosoma cruzi strain TcIV infects raccoons from Illinois

BACKGROUND

The northern limits of Trypanosoma cruzi across the territory of the United States remain unknown. The known vectors Triatoma sanguisuga and T. lecticularia find their northernmost limits in Illinois; yet, earlier screenings of those insects did not reveal the presence of the pathogen, which has not been reported in vectors or reservoir hosts in this state.

OBJECTIVES

Five species of medium-sized mammals were screened for the presence of T. cruzi.

METHODS

Genomic DNA was isolated from heart, spleen and skeletal muscle of bobcats (Lynx rufus, n = 60), raccoons (Procyon lotor, n = 37), nine-banded armadillos (Dasypus novemcinctus, n = 5), Virginia opossums (Didelphis virginiana, n = 3), and a red fox (Vulpes vulpes). Infections were detected targeting DNA from the kinetoplast DNA minicircle (kDNA) and satellite DNA (satDNA). The discrete typing unit (DTU) was determined by amplifying two gene regions: the Spliced Leader Intergenic Region (SL), via a multiplex polymerase chain reaction, and the 24Sα ribosomal DNA via a heminested reaction. Resulting sequences were used to calculate their genetic distance against reference DTUs.

FINDINGS

18.9% of raccoons were positive for strain TcIV; the rest of mammals tested negative.

MAIN CONCLUSIONS

These results confirm for the first time the presence of T. cruzi in wildlife from Illinois, suggesting that a sylvatic life cycle is likely to occur in the region. The analyses of sequences of SL suggest that amplicons resulting from a commonly used multiplex reaction may yield non-homologous fragments.

Increased overwinter mortalities of white-tailed deer (Odocoileus virginianus) fawns during a drought year

Mortality rates of white-tailed deer (Odocoileus virginianus (Zimmermann, 1780)) fawns have been quantified throughout North America. Few studies, however, have assessed cause-specific mortality of fawns after the first 3 months of life or during a severe weather event. During 2010–2014, we captured and radio-tracked 93 fawns in southern and central Illinois and recorded 18 mortality events. In order of importance, survival rates were affected by days since capture, year of drought, age at capture, week after capture (1 or 0 indicator), and region. Estimated overwinter (fall through spring) survival rate (±SE) of fawns in both regions during 2010–2014 was 0.83 ± 0.04. However, estimated overwinter survival rates were depressed during 2012–2013, following the severe drought of 2012 (0.63 ± 0.11 or 0.66 ± 0.11 depending on the model). Main causes of mortality were capture-related and predation, though some dead deer also showed signs of hemorrhagic disease. We suspect that the extreme drought of 2012 created favorable conditions for fall–spring mortality of fawns, due to elevated disease transmission and lower forage quality and quantity for deer. In addition, drought may have contributed to predation by reducing abundance of alternative prey. Our results suggest that severe weather conditions during summer can substantially impact overwinter fawn survival.

Antibacterial isoeugenol coating on stainless steel and polyethylene surfaces prevents biofilm growth

AIMS

Pathogenic bacteria can spread between individuals or between food items via the surfaces they share. Limiting the survival of pathogens on surfaces, therefore, presents an opportunity to limit at least one route of how pathogens spread. In this study, we propose that a simple coating with the essential oil isoeugenol can be used to circumvent the problem of bacterial transfer via surfaces.

METHODS AND RESULTS

Two commonly used materials, stainless steel and polyethylene, were coated by physical adsorption, and the coatings were characterized by Raman spectroscopy, atomic force microscopy and water contact angle measurements. We quantified and visualized the colonization of coated and uncoated surfaces by three bacteria: Staphylococcus aureus, Listeria monocytogenes and Pseudomonas fluorescens. No viable cells were detected on surfaces coated with isoeugenol.

CONCLUSIONS

The isoeugenol coating prepared with simple adsorption proved effective in preventing biofilm formation on stainless steel and polyethylene surfaces. The result was caused by the antibacterial effect of isoeugenol, as the coating did not diminish the adhesive properties of the surface.

SIGNIFICANCE AND IMPACT OF THE STUDY

Our study demonstrates that a simple isoeugenol coating can prevent biofilm formation of S. aureus, L. monocytogenes and P. fluorescens on two commonly used surfaces.

PBDEs and Dechloranes in Raccoons in the Midwestern United States

Raccoons (Procyon lotor) are one of the most widespread and abundant mammals in North America. To evaluate the suitability of using raccoons as bioindicator species, we analyzed liver tissues (n = 32) collected from 2013 to 2015 for the presence of polybrominated diphenyl ethers (PBDEs) and Dechloranes. ∑PBDE concentrations ranged from 19.1 to 2125 ng/g lw (median = 98.0 ng/g lw) and did not differ between gender or age of raccoon. Dechloranes were detected in 38% of raccoons and ranged from 0.15 to 50.4 ng/g lw (median = 2.32 ng/g lw). The comparatively high PBDE concentrations, and presence of Dechloranes in the raccoons in our study suggest that biota in terrestrial habitats are still widely exposed to and susceptible to the bioaccumulation of current and emerging flame retardants.

Concurrent Examination of Bobcats and Ticks Reveals High Prevalence of Cytauxzoon felis in Southern Illinois

Cytauxzoon felis is an intraerythrocytic apicomplexan of felids enzootic in the southeastern United States. In domestic cats (Felis catus), this parasite can result in the highly fatal disease cytauxzoonosis or bobcat fever. Bobcats (Lynx rufus) are the wild animal reservoir host. To date, the characterization of prevalence of C. felis in bobcats is mostly based on broad-scale surveys from hunter-harvested specimens collected across large geographic areas, usually consisting of multiple states. Detailed studies on the development, transmission, distribution, effects, and prevalence of C. felis in the tick vectors are scarce. To fill some of these gaps in the literature, such as prevalence in ticks and bobcats in a discrete region, we examined bobcats and ticks in an 8,000-km² portion of southern Illinois. We screened for C. felis using a nested polymerase chain reaction that amplifies a fragment of the nuclear small subunit (SSU) 18S rRNA. We screened 125 individual bobcats collected in southern Illinois from 2003 to 2015; of these, 70.6% were positive for C. felis. In addition, we screened 214 ticks of both vector species (Amblyomma americanum and Dermacentor variabilis) and detected C. felis in 15.6% of them; this prevalence is higher than reported by previous surveys. Our study reports the prevalence of C. felis in ticks and bobcats from south Illinois. We found that 70.6% of bobcats and 15.6% of ticks were infected with C. felis, which suggests risk of transmission to domestic cats.

Does landscape connectivity shape local and global social network structure in white-tailed deer?

Intraspecific social behavior can be influenced by both intrinsic and extrinsic factors. While much research has focused on how characteristics of individuals influence their roles in social networks, we were interested in the role that landscape structure plays in animal sociality at both individual (local) and population (global) levels. We used female white-tailed deer (Odocoileus virginianus) in Illinois, USA, to investigate the potential effect of landscape on social network structure by weighting the edges of seasonal social networks with association rate (based on proximity inferred from GPS collar data). At the local level, we found that sociality among female deer in neighboring social groups (n = 36) was mainly explained by their home range overlap, with two exceptions: 1) during fawning in an area of mixed forest and grassland, deer whose home ranges had low forest connectivity were more social than expected; and 2) during the rut in an area of intensive agriculture, deer inhabiting home ranges with high amount and connectedness of agriculture were more social than expected. At the global scale, we found that deer populations (n = 7) in areas with highly connected forest-agriculture edge, a high proportion of agriculture, and a low proportion of forest tended to have higher weighted network closeness, although low sample size precluded statistical significance. This result implies that infectious disease could spread faster in deer populations inhabiting such landscapes. Our work advances the general understanding of animal social networks, demonstrating how landscape features can underlie differences in social behavior both within and among wildlife social networks.

Halogenated flame retardants in bobcats from the midwestern United States

In response to the restrictions of polybrominated diphenyl ether (PBDE) flame retardants in various consumer products, alternative halogenated flame retardants have been subjected to increased use. Compared to aquatic ecosystems, relatively little information is available on the contamination of alternative flame retardants in terrestrial ecosystems, especially with regards to mammalian wildlife. In this study we used a top terrestrial carnivore, the bobcat (Lynx rufus), as a unique biomonitoring species for assessing flame retardant contamination in the Midwestern United States (U.S.) terrestrial ecosystems. Concentrations of ∑PBDEs (including all detectable PBDE congeners) ranged from 8.3 to 1920 ng/g lipid weight (median: 50.3 ng/g lw) in livers from 44 bobcats collected during 2013-2014 in Illinois. Among a variety of alternative flame retardants screened, Dechloranes (including anti- and syn-Dechlorane Plus and Dechlorane-602, 603, and 604), tetrabromo-o-chlorotoluene (TBCT), and hexabromocyclododecane (HBCD) were also frequently detected, with median concentrations of 28.7, 5.2, and 11.8 ng/g lw, respectively. Dechlorane analogue compositions in bobcats were different from what has been reported in other studies, suggesting species- or analogue-dependent bioaccumulation, biomagnification, or metabolism of Dechlorane chemicals in different food webs. Our findings, along with previously reported food web models, suggest Dechloranes may possess substantial bioaccumulation and biomagnification potencies in terrestrial mammalian food webs. Thus, attention should be given to these highly bioavailable flame retardants in future environmental biomonitoring and risk assessments in a post-PBDE era.

Bioaccumulation of PCBs in a Wild North American Felid

Organohalogenated compounds (OHCs) such as polychlorinated biphenyls (PCBs) are of global concern due to their environmental persistence, bioaccumulative potential, and adverse effects on humans and wildlife. We investigated the concentrations of PCBs in the liver tissues of bobcats (Lynx rufus) sampled in Illinois during 2013. Concentrations of ∑PCBs ranged from 76.4 to 3782 ng/g lw (median 562.97 ng/g lw). Male bobcats had significantly greater concentrations of PCBs than females (p = 0.04). Ours is one of the first studies to report PCBs in a wild North American felid. We suggest that bobcats can be used as a suitable bioindicator species to monitor organohalogen contamination in terrestrial ecosystems.

Single-Camera Trap Survey Designs Miss Detections: Impacts on Estimates of Occupancy and Community Metrics

The use of camera traps as a tool for studying wildlife populations is commonplace. However, few have considered how the number of detections of wildlife differ depending upon the number of camera traps placed at cameras-sites, and how this impacts estimates of occupancy and community composition. During December 2015-February 2016, we deployed four camera traps per camera-site, separated into treatment groups of one, two, and four camera traps, in southern Illinois to compare whether estimates of wildlife community metrics and occupancy probabilities differed among survey methods. The overall number of species detected per camera-site was greatest with the four-camera survey method (P<0.0184). The four-camera survey method detected 1.25 additional species per camera-site than the one-camera survey method, and was the only survey method to completely detect the ground-dwelling silvicolous community. The four-camera survey method recorded individual species at 3.57 additional camera-sites (P = 0.003) and nearly doubled the number of camera-sites where white-tailed deer (Odocoileus virginianus) were detected compared to one- and two-camera survey methods. We also compared occupancy rates estimated by survey methods; as the number of cameras deployed per camera-site increased, occupancy estimates were closer to naïve estimates, detection probabilities increased, and standard errors of detection probabilities decreased. Additionally, each survey method resulted in differing top-ranked, species-specific occupancy models when habitat covariates were included. Underestimates of occurrence and misrepresented community metrics can have significant impacts on species of conservation concern, particularly in areas where habitat manipulation is likely. Having multiple camera traps per site revealed significant shortcomings with the common one-camera trap survey method. While we realize survey design is often constrained logistically, we suggest increasing effort to at least two camera traps facing opposite directions per camera-site in habitat association studies, and to utilize camera-trap arrays when restricted by equipment availability.