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Licen S, Barbieri G, Cozzutto S, Crosera M, Adami G, Barbieri P. Optical particle counter data collected in two inhabited sites close to an industrial hot spot during a three months survey. Data Brief 2019; 25:104250. [PMID: 31497628 PMCID: PMC6722219 DOI: 10.1016/j.dib.2019.104250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Revised: 06/12/2019] [Accepted: 07/04/2019] [Indexed: 12/01/2022] Open
Abstract
Data on this paper describe the monitoring of different size ranges of particulate matter on dwellings positioned close to an integral cycle steel plant. Data were collected by eight channel (PM0.3, PM0.5, PM0.7, PM1, PM2, PM3, PM5, PM10) optical particle counters positioned in two sites. The data were recorded as counts-per-minute for every size channel in a three months survey from June to September 2015. Basic statistical elaboration and boxplot graphs as well as raw data are included. The data are related to “Characterization of variability of air particulate matter size profiles recorded by Optical Particle Counters near a complex emissive source by use of Self-Organizing Map algorithm” Licen et al.,2019, in which a statistical elaboration by Self-Organizing Map algorithm is proposed.
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Affiliation(s)
- S. Licen
- Dept. of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
- Corresponding author.
| | - G. Barbieri
- ARCO SolutionS s.r.l., Spin-off Company of the Dept. of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
| | - S. Cozzutto
- ARCO SolutionS s.r.l., Spin-off Company of the Dept. of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
| | - M. Crosera
- Dept. of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
| | - G. Adami
- Dept. of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
| | - P. Barbieri
- Dept. of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
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Malev O, Contin M, Licen S, Barbieri P, De Nobili M. Bioaccumulation of polycyclic aromatic hydrocarbons and survival of earthworms (Eisenia andrei) exposed to biochar amended soils. Environ Sci Pollut Res Int 2016; 23:3491-502. [PMID: 26490928 DOI: 10.1007/s11356-015-5568-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2015] [Accepted: 10/06/2015] [Indexed: 05/14/2023]
Abstract
Biochar has a charcoal polycyclic aromatic structure which allows its long half-life in soil, making it an ideal tool for C sequestration and for adsorption of organic pollutants, but at the same time raises concerns about possible adverse impacts on soil biota. Two biochars were tested under laboratory-controlled conditions on Eisenia andrei earthworms: a biochar produced at low temperature from wine tree cuttings (WTB) and a commercial low tar hardwood lump charcoal (HLB). The avoidance test (48-h exposure) showed that earthworms avoid biochar-treated soil with rates higher than 16 t ha(-1) for HLB and 64 t ha(-1) for WTB. After 42 days, toxic effects on earthworms were observed even at application rates (100 t ha(-1)) that are generally considered beneficial for most crops. The concentration of HLB and WTB required to kill half of earthworms' population (LC50; 95% confidence limits) in the synthetic OECD soil was 338 and 580 t ha(-1), respectively. Accumulation of polycyclic aromatic hydrocarbons (PAH) in earthworms exposed to the two biochar types at 100 t ha(-1) was tested in two soils of different texture. In biochar-treated soils, the average earthworm survival rates were about 64% in the sandy and 78% clay-loam soils. PAH accumulation was larger in the sandy soil and largest in soils amended with HLB. PAH with less than four rings were preferentially scavenged from the soil by biochars, and this behaviour may mask that of the more dangerous components (i.e. four to five rings), which are preferentially accumulated. Earthworms can accumulate PAH as a consequence of exposure to biochar-treated soils and transfer them along the food chain. Soil type and biochar quality are both relevant in determining PAH transfer.
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Affiliation(s)
- O Malev
- Dipartimento di Scienze Agrarie ed Ambientali, Università degli Studi di Udine, via delle scienze 206, 33100, Udine, Italy
| | - M Contin
- Dipartimento di Scienze Agrarie ed Ambientali, Università degli Studi di Udine, via delle scienze 206, 33100, Udine, Italy
| | - S Licen
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, via Giorgieri 1, 34127, Trieste, Italy
| | - P Barbieri
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, via Giorgieri 1, 34127, Trieste, Italy
| | - M De Nobili
- Dipartimento di Scienze Agrarie ed Ambientali, Università degli Studi di Udine, via delle scienze 206, 33100, Udine, Italy.
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Joerger M, Hess D, Delmonte A, Gallerani E, Fasolo A, Gianni L, Cresta S, Barbieri P, Pace S, Sessa C. Integrative population pharmacokinetic and pharmacodynamic dose finding approach of the new camptothecin compound namitecan (ST1968). Br J Clin Pharmacol 2015; 80:128-38. [PMID: 25580946 DOI: 10.1111/bcp.12583] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Revised: 12/08/2014] [Accepted: 12/31/2014] [Indexed: 11/30/2022] Open
Abstract
AIMS Namitecan is a new camptothecan compound undergoing early clinical development. This study was initiated to build an integrated pharmacokinetic (PK) and pharmacodynamic (PD) population model of namitecan to guide future clinical development. METHODS Plasma concentration-time data, neutrophils and thrombocytes were pooled from two phase 1 studies in 90 patients with advanced solid tumours, receiving namitecan as a 2 h infusion on days 1 and 8 every 3 weeks (D1,8) (n = 34), once every 3 weeks (D1) (n = 29) and on 3 consecutive days (D1-3) (n = 27). A linear three compartment PK model was coupled to a semiphysiological PD-model for neutrophils and thrombocytes. Data simulations were used to interrogate various dosing regimens and give dosing recommendations. RESULTS Clearance was estimated to be 0.15 l h(-1), with a long terminal half-life of 48 h. Body surface area was not associated with clearance, supporting flat-dosing of namitecan. A significant and clinically relevant association was found between namitecan area under the concentration-time curve (AUC) and the percentage drop of neutrophils (r(2) = 0.51, P < 10(-4)) or thrombocytes (r(2) = 0.49, P < 10(-4)). With a target for haematological dose-limiting toxicity of <20%, the recommended dose was defined as 12.5 mg for the D1,8 regimen, 23 mg for the once every 3 week regimen and 7 mg for the D1-3 regimen. CONCLUSION This is the first integrated population PK-PD analysis of the new hydrophilic topoisomerase I inhibitor namitecan, that is currently undergoing early clinical development. A distinct relationship was found between drug exposure and haematological toxicity, supporting flat-dosing once every 3 weeks as the most adequate dosing regimen.
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Affiliation(s)
- M Joerger
- Department of Medical Oncology & Hematology, Cantonal Hospital, St Gallen, Switzerland.,Clinical Research Facility, Department of Medical Oncology & Hematology, Cantonal Hospital, St Gallen, Switzerland
| | - D Hess
- Department of Medical Oncology & Hematology, Cantonal Hospital, St Gallen, Switzerland.,Clinical Research Facility, Department of Medical Oncology & Hematology, Cantonal Hospital, St Gallen, Switzerland
| | - A Delmonte
- European Institute of Oncology, Milan, Italy
| | - E Gallerani
- IOSI Oncology Insitute of Southern Switzerland, Bellinzona, Switzerland
| | - A Fasolo
- Department of Medical Oncology, Ospedale San Raffaele, IRCCS, Scientific Institute, Milan, Italy
| | - L Gianni
- Department of Medical Oncology, Ospedale San Raffaele, IRCCS, Scientific Institute, Milan, Italy
| | - S Cresta
- IRCCS Istituto Nazionale dei Tumori, Milan, Italy
| | - P Barbieri
- Sigma-Tau Research Switzerland S.A., Mendrisio, Switzerland
| | - S Pace
- Sigma-Tau Industrie Farmaceutiche Riunite SpA, Pomezia, Italy
| | - C Sessa
- IOSI Oncology Insitute of Southern Switzerland, Bellinzona, Switzerland
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Barbieri P, Crivellenti LC, Nishimura RY, Sartorelli DS. Validation of a food frequency questionnaire to assess food group intake by pregnant women. J Hum Nutr Diet 2014; 28 Suppl 1:38-44. [PMID: 24580747 DOI: 10.1111/jhn.12224] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
BACKGROUND Previous studies conducted among pregnant women to test the accuracy of food frequency questionnaires (FFQ) for estimating food group intake were restricted to one specific trimester of pregnancy. The present study aimed to validate a FFQ for assessing the intake of food groups throughout pregnancy. METHODS In total, 75 adult pregnant Brazilian women were evaluated. Dietary intake was assessed by the FFQ (completed at the third trimester of pregnancy) and by three 24-h dietary recalls; one in each trimester of pregnancy. RESULTS The food items were classified into 20 groups. Adequate deatenuatted Pearson correlation coefficients (>0.4) were observed for the intake of bread/cake, butter/margarine; milk/dairy products; soft drinks/artificial juices; coffee/tea; and pastries/sandwiches. The FFQ served poorly for estimating fruit and vegetable intake. A high percentage (>70%) of women were classified into the same or adjacent quartiles for estimates of cookies/crackers, butter/margarine, milk/dairy products, fruit juices, soft drinks/artificial juices, coffee/tea, roots, rice, beans, meat/chicken/sausages, fried foods, fish, eggs, sweets/sugars, and pastries/sandwiches. Nevertheless, the agreement of joint classification between the dietary methods was mostly into adjacent quartiles, rather than in the same quartile, and low values of kappa were found. CONCLUSIONS The data reported in the present study suggest that the FFQ might not be an appropriate dietary method for evaluating food group intake throughout pregnancy. The joint classification between methods by categories of intake of food groups was mostly into adjacent quartiles, which could lead to attenuated associations when investigating diet-disease relationships during pregnancy.
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Affiliation(s)
- P Barbieri
- Graduate Program in Community Health, Riberão Preto Medical School, University of São Paulo, Ribeirão Preto, SP, Brazil
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Cutuli B, Wiazzane N, Radicchia V, Barbieri P, Guenzi M, Huscher A, Borghesi S, Iannone T, Vianello E, Rosetto M. Carcinome canalaire in situ du sein : résultats du traitement radiochirurgical conservateur, analyse de 821 cas. Cancer Radiother 2012. [DOI: 10.1016/j.canrad.2012.07.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Caruso E, Banfi S, Barbieri P, Leva B, Orlandi V. Synthesis and antibacterial activity of novel cationic BODIPY photosensitizers. Journal of Photochemistry and Photobiology B: Biology 2012; 114:44-51. [DOI: 10.1016/j.jphotobiol.2012.05.007] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2012] [Revised: 04/24/2012] [Accepted: 05/09/2012] [Indexed: 01/23/2023]
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Fasolo A, Del Conte G, Calderone RG, Gallerani E, Hagner N, Barbieri P, Luraghi L, Pace S, Capocasa F, Coceani N, Maccioni E, Hess D, Sessa C, Gianni L. Phase I clinical trial of namitecan (ST1968): Results with D1-3 q3wks schedule. J Clin Oncol 2011. [DOI: 10.1200/jco.2011.29.15_suppl.e13570] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Antognoni P, Barbieri P, Bruni A, Cenacchi E, Ceroni P, Giacobazzi P, Guidi G, Lanfranchi B, Mazzeo E, Meduri B, Parmiggiani M, Tolento G, Turco E, Costi T, Bertoni F. 1264 poster 4D CT-BASED PTV DEFINITION FOR LUNG TUMOURS: COMPARISON WITH CONVENTIONAL 3D-CRT USING INDIVIDUAL MARGINS. Radiother Oncol 2011. [DOI: 10.1016/s0167-8140(11)71386-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Antognoni P, Barbieri P, Bruni A, Cenacchi E, Ceroni P, Guidi G, Lanfranchi B, Mazzeo E, Meduri B, Parmiggiani M, Pratissoli S, Tolento G, Turco E, Costi T, Bertoni F. 1233 poster AUTOMATIC +/− MANUAL CORRECTION FOR INTER-FRACTION ERRORS DETECTION IN PATIENTS TREATED WITH TOMOTHERAPY®. Radiother Oncol 2011. [DOI: 10.1016/s0167-8140(11)71355-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Di L, Accarino M, Bolognese F, Galli E, Barbieri P. Isolation and Metabolic Characterization of a Pseudomonas stutzeri Mutant Able To Grow on the Three Isomers of Xylene. Appl Environ Microbiol 2010; 63:3279-81. [PMID: 16535677 PMCID: PMC1389232 DOI: 10.1128/aem.63.8.3279-3281.1997] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
From an o-xylene-degrading Pseudomonas stutzeri strain (OX1), we previously isolated mutant M1, which had acquired the ability to grow on m-xylene and p-xylene but lost the ability to utilize the ortho isomer. From M1 cultures we have now isolated a revertant strain (R1) which grows on o-xylene and retains the ability to grow with the meta and para isomers regardless of the selective pressure applied. In P. stutzeri R1, o-xylene is degraded through two successive monooxygenations of the aromatic ring, while m-xylene and p-xylene catabolism proceeds through the progressive oxidation of a methyl substituent, although unquantifiable amounts of these two substrates are transformed into the corresponding dimethylphenols, which are not utilized for further growth. The two catabolic pathways are inducible by all three xylene isomers.
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Brugnolo A, Morbelli S, Dessi B, Girtler N, Mazzei D, Famà F, Barbieri P, Cabassi G, Koulibaly PM, Sambuceti G, Rodriguez G, Nobili F. The reversed clock drawing test phenomenon in Alzheimer's disease: A perfusion SPECT study. Dement Geriatr Cogn Disord 2010; 29:1-10. [PMID: 20093833 DOI: 10.1159/000270898] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 10/05/2009] [Indexed: 11/19/2022] Open
Abstract
AIM To unveil a brain single photon emission computed tomography (SPECT) pattern in Alzheimer's disease (AD) patients, showing a reversed clock drawing test (CDT) phenomenon. PATIENTS AND METHODS Among 1,005 consecutive subjects, 9 AD patients who drew a reversed CDT (AD-R) underwent SPECT, which was analysed (SPM2) versus a group of 10 AD patients performing the CDT correctly (AD+) and versus 15 controls (CTR). Brain SPECT in 11 AD patients who mistook the CDT in a common way (AD-) was compared with AD+ and CTR groups. RESULTS Relative hypoperfusion was found in AD-R versus CTR in right medial frontal, parahippocampal and subcallosal gyri, and in left insula and superior temporal gyrus. Hypoperfusion was found in AD-R versus AD+ in the right uncus, superior temporal and parahippocampal gyri. In the AD- versus CTR comparison, hypoperfusion was found in left hippocampus, parahippocampal gyrus and superior parietal lobule. In AD-R versus AD+ and CTR merged together, the analysis showed hypoperfusion in the right parahippocampus, medial frontal gyrus, superior temporal gyrus and uncus, in the left insula and superior temporal gyrus. CONCLUSION Fronto-temporal dysfunction, especially in the right hemisphere, plays a role in the reversed CDT phenomenon in AD patients, whereas matched AD patients mistaking the CDT in a common way show left posterior temporo-parietal hypoperfusion.
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Affiliation(s)
- A Brugnolo
- Department of Neuroscience, Ophthalmology and Genetics, University of Genoa, Italy.
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Pecorelli S, Ray-Coquard I, Tredan O, Colombo N, Parma G, Tisi G, Katsaròs D, Lhommé C, Lissoni AA, Vermorken JB, du Bois A, Poveda A, Frigerio L, Barbieri P, Carminati P, Brienza S, Guastalla JP. Phase II of oral gimatecan in patients with recurrent epithelial ovarian, fallopian tube or peritoneal cancer, previously treated with platinum and taxanes. Ann Oncol 2010; 21:759-765. [PMID: 19906760 PMCID: PMC2844948 DOI: 10.1093/annonc/mdp514] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2009] [Revised: 10/01/2009] [Accepted: 10/06/2009] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND A prospective phase II study was conducted to evaluate the efficacy and toxicity of oral gimatecan in patients with recurrent epithelial ovarian, fallopian tube or peritoneal cancer. PATIENTS AND METHODS Patients had a maximum of three prior chemotherapy lines with no more than two prior platinum-containing regimens and a progression-free interval after the last dose of platinum <12 months. A total dose of 4 mg/m(2)/cycle (0.8 mg/m(2)/day from day 1 to day 5) was administered, repeated every 28 days. RESULTS From June 2005 to December 2005, 69 assessable patients were enrolled. The best overall response to study treatment by combined CA-125 and RECIST criteria was partial response in 17 patients (24.6%) and disease stabilization in 22 patients (31.9%). The median time to progression and overall survival were 3.8 and 16.2 months, respectively. A total of 312 cycles were administered. Neutropenia grade 4 and thrombocytopenia grade 4 occurred in 17.4% and 7.2% of patients, respectively. Diarrhea grade 4 was never observed. Asthenia and fatigue were reported by 36.2% and 18.8% of patients, but were all grade 2 or less. CONCLUSION Gimatecan is a new active agent in previously treated ovarian cancer with myelosuppression as main toxicity.
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Affiliation(s)
- S Pecorelli
- Department of Obstetrics and Gynecology, University of Brescia, Brescia, Italy
| | - I Ray-Coquard
- Department of Medical Oncology, Centre Léon Bérard, Lyon, France
| | - O Tredan
- Department of Medical Oncology, Centre Léon Bérard, Lyon, France
| | - N Colombo
- Medical Gynecologic Oncology Unit, European Institute of Oncology, University of Milan Bicocca, Milan, Italy
| | - G Parma
- Medical Gynecologic Oncology Unit, European Institute of Oncology, University of Milan Bicocca, Milan, Italy
| | - G Tisi
- Department of Obstetrics and Gynecology, University of Brescia, Brescia, Italy
| | - D Katsaròs
- Gynecologic Oncology Unit, University of Turin, Turin, Italy
| | - C Lhommé
- Department of Medical Gynaecology-Oncology, Institut Gustave Roussy, Villejuif, France
| | - A A Lissoni
- Gynecologic Oncology Unit, San Gerardo Hospital, University of Milan Bicocca, Monza, Italy
| | - J B Vermorken
- Department of Medical Oncology, Antwerp University Hospital, Edegem, Belgium
| | - A du Bois
- Department of Gynecology and Gynecologic Oncology, Dr Horst Schmidt Klinik (HSK), Wiesbaden, Germany
| | - A Poveda
- Onco Gynecological Area, Fundación Instituto Valenciano de Oncología, Valencia, Spain
| | - L Frigerio
- Department of Obstetrics and Gynecology, Ospedali Riuniti, Bergamo, Italy
| | - P Barbieri
- sigma-tau Research Switzerland S.A., Mendrisio, Switzerland.
| | - P Carminati
- sigma-tau Industrie Farmaceutiche Riunite S.p.A., Pomezia (Roma), Italy
| | - S Brienza
- Debioclinic S.A., Charenton le Pont, France
| | - J P Guastalla
- Department of Medical Oncology, Centre Léon Bérard, Lyon, France
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Hess D, Boehm S, Delmonte A, Gallerani E, Barbieri P, Pace S, Carminati P, Marsoni S, Coceani N, Sessa C. Clinical development of namitecan (ST1968), a novel camptothecin derivative with high antitumor activity: Phase I clinical data. J Clin Oncol 2009. [DOI: 10.1200/jco.2009.27.15_suppl.2570] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
2570 Background: Namitecan is a new water-soluble camptothecin analogue which showed high antitumor activity in preclinical models. Aim of this trial was to determine safety, PK profile and activity in adult patients with advanced solid tumors. Methods: The dose escalation started at 2.5 mg i.v. on days 1 and 8 of a 21 day cycle (D1, D8 Q21D) and increased according to 3+3 cohort design depending on the observed toxicity. Dose limiting toxicity (DLT) definitions were: ANC <0.5x109/L for >5 days; PLT ≥ Grade 3 (CTC V3); grade ≥2 liver/renal toxicity not recovered by D22; any non-hematologic toxicity ≥ Grade 3; D8 dose skipping due to toxicity. Maximum tolerated dose (MTD) and recommended dose (RD) were the primary end-points. Blood and urine samples were collected at cycle 1 for PK evaluation. Results: 31 pts (11 endometrial ca., 5 CRC, 5 ovarian ca., 2 NSCLC, 8 other) have been included, with 6 dose levels evaluated (2.5; 5; 10; 15; 17.5 and 20 mg). 17.5 mg was introduced later when 2/7 DLTs at 20 mg were observed (ANC G4>5days, one with D8 skipping). At 17.5mg 2/4 pts experienced DLTs (ANC G4; D8 skipped). Uncomplicated neutropenia and thrombocytopenia were the most relevant G3/4 hematological toxicities. Other toxicities were mild or moderate asthenia, fatigue and alopecia. The MTD was defined at 17.5 mg and the RD was 15 mg. Stable disease ≥ 6 cycles was recorded in 6 pts (2 stable diseases ≥ 10 cycles). PK was linear and data suggest an entero-hepatic recirculation. No metabolites were found in plasma and the product resulted poorly excreted into urine. Conclusions: The MTD and RD of D1, D8 Q21D schedule have been identified. The study will continue with the evaluation of MTD and RD of a single administration per cycle (D1 Q21D), to optimize the schedule of treatment. [Table: see text]
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Affiliation(s)
- D. Hess
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - S. Boehm
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - A. Delmonte
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - E. Gallerani
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - P. Barbieri
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - S. Pace
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - P. Carminati
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - S. Marsoni
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - N. Coceani
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
| | - C. Sessa
- Kantonsspital St. Gallen, St. Gallen, Switzerland; Istituto Oncologico della Svizzera Italiana, Bellinzona, Switzerland; Sigma Tau Research Switzerland S.A., Mendrisio, Switzerland; Sigma Tau, Pomezia, Italy; SENDO, Milano, Italy
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Cozzi F, Adami G, Barbieri P, Reisenhofer E, Bovenzi M. Is PM(10) mass measurement a reliable index for air quality assessment? An environmental study in a geographical area of north-eastern Italy. Environ Monit Assess 2008; 144:389-401. [PMID: 18040879 DOI: 10.1007/s10661-007-0002-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2007] [Accepted: 09/19/2007] [Indexed: 05/25/2023]
Abstract
The aim of this study was to measure the concentration of some metals (Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Ti) in PM(10) samples collected in one urban and one industrial site and to assess that PM(10) total mass measurement may be not sufficient as air quality index due to its complex composition. Metals were determined by inductively coupled plasma-atomic emission spectroscopy (ICP-AES) and differential pulsed anodic stripping voltammetry (DPASV). The measured concentrations were used to calculate the content of metals in the PM(10) total mass, and to estimate the enrichment factors and the correlations between PM(10), metal concentrations and meteorological data for the two sites. The mean PM10 concentration during the sampling period in the urban site exceeded the annual European Union (EU) standard (40 microg/m(3)) and, for some sampling days, the daily EU standard (50 microg/m(3)) was also exceeded. In opposite, both EU standards were never exceeded in the industrial site. The overall metal content was nearly double in the industrial site compared to the urban one, and the mean Ni concentration exceeded the EU annual limit value (10 ng/m(3)). The metals with the highest enrichment factor were Cd, Cu, Ni and Pb for both sites, suggesting a dominant anthropogenic source for these metals. Metal concentrations were very low and typical of rural background during Christmas holidays, when factories were closed. PM(10) total mass measurement is not a sufficient air quality index since the metal content of PM(10) is not related to its total mass, especially in sites with industrial activities. This measurement should be associated with the analysis of toxic metals.
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Affiliation(s)
- F Cozzi
- Department of Chemical Sciences, University of Trieste, Via L. Giorgieri 1, Trieste, Italy.
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Sepe A, Barbieri P, Peduzzi R, Demarta A. Evaluation of recA sequencing for the classification of Aeromonas strains at the genotype level. Lett Appl Microbiol 2008; 46:439-44. [DOI: 10.1111/j.1472-765x.2008.02339.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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16
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Astel A, Tsakovski S, Simeonov V, Reisenhofer E, Piselli S, Barbieri P. Multivariate classification and modeling in surface water pollution estimation. Anal Bioanal Chem 2007; 390:1283-92. [DOI: 10.1007/s00216-007-1700-6] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2007] [Revised: 09/24/2007] [Accepted: 10/11/2007] [Indexed: 11/29/2022]
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17
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Astel A, Tsakovski S, Barbieri P, Simeonov V. Comparison of self-organizing maps classification approach with cluster and principal components analysis for large environmental data sets. Water Res 2007; 41:4566-78. [PMID: 17632213 DOI: 10.1016/j.watres.2007.06.030] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2007] [Revised: 05/26/2007] [Accepted: 06/13/2007] [Indexed: 05/16/2023]
Abstract
Three classification techniques (loading and score projections based on principal components analysis (PCA), cluster analysis (CA) and self-organizing maps (SOM)) were applied to a large environmental data set of chemical indicators of river water quality. The study was carried out by using long-term water quality monitoring data. The advantages of SOM algorithm and its classification and visualization ability for large environmental data sets are stressed. The results obtained allowed detecting natural clusters of monitoring locations with similar water quality type and identifying important discriminant variables responsible for the clustering. SOM clustering allows simultaneous observation of both spatial and temporal changes in water quality. The chemometric approach revealed different patterns of monitoring sites conditionally named "tributary", "urban", "rural" or "background". This objective separation could lead to an optimization of river monitoring nets and to a better tracing natural and anthropogenic changes along the river stream.
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Affiliation(s)
- A Astel
- Environmental Chemistry Research Unit, Biology and Environmental Protection Institute, Pomeranian Academy, 22a Arciszewskiego Street, 76-200 Słupsk, Poland.
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Mariani P, Moliterni A, Da Prada G, Hess D, Gamucci T, Zaniboni A, Malossi A, Barbieri P, Marsoni S, Gianni L. A phase II trial of the novel oral camptothecin gimatecan (G) in women with anthracycline (A) and taxane (T) pre-treated advanced breast cancer. J Clin Oncol 2006. [DOI: 10.1200/jco.2006.24.18_suppl.662] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
662 Background: Gimatecan (G) is a new oral camptothecin with a favourable therapeutic index in several tumor xenograft models and with documented antitumor activity in breast, endometrial and NSCLC cancer in Phase I. A Phase II trial was implemented to determine the antitumor activity of G in women with pre-treated metastatic breast cancer (MBC). Methods: A Simon 2-step design was used: patients with MBC who failed A & T were eligible. Treatment failure was defined as disease progressing after receiving both A and T (adjuvant or metastatic setting). All patients had ECOG 0–1. Baseline neuropathy > gr 1 or CNS metastases were criteria of exclusion. G was administered for 5 days every week on weeks 1 & 2 q4weeks at 4–5 mg/m2 total dose per cycle. Results: To date, 21 patients have received 67 cycles of G (median 3); 18 are evaluable for the 1st step analysis. Median age was 53 years (range, 32–70), all had received A & T prior treatment. The initial dose of 5 mg/m2 was reduced to 4 mg/m2 after treating the first 7 cases due to hematological toxicity (thrombocytopenia G3 30% and neutropenia G3–4 40%) that prevented the planned monthly retreatment. The toxicity at 4 mg/m2 included thrombocytopenia (% of cycles with any grade: 36%, G3 9%); neutropenia (G3 18%), diarrhea (1 case), nausea (81%, G3 18%), vomiting (G1 18%), and asthenia (G1 36%). To date, three confirmed partial responses (PR) lasting respectively 5.5, 5.7+, and 9.4+ months and two unconfirmed PR were observed in visceral and nodal sites. Accrual into step 2 is proceeding. Conclusions: Gimatecan at a dose of 4 mg/m2 is well tolerated and active. The antitumor activity of 27% observed in the first step of the study is unusual for camptothecins and prompted to continue to the second step and complete the ongoing enrolment of 43 patients overall. [Table: see text]
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Affiliation(s)
- P. Mariani
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - A. Moliterni
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - G. Da Prada
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - D. Hess
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - T. Gamucci
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - A. Zaniboni
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - A. Malossi
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - P. Barbieri
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - S. Marsoni
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
| | - L. Gianni
- Istituto Nazionale dei Tumori, Milano, Italy; Fondazione Savatore Maugeri, Pavia, Italy; Kantonsspital St. Gallen, St. Gallen, Switzerland; Ospedale Umberto I, Frosinone, Italy; Casa di Cura Poliambulanza, Brescia, Italy; Ospedale degli Infermi, Biella, Italy; Sigma Tau S.p.A., Pomezia (Roma), Italy; Southern Europe New Drug Organization (SENDO), Milano, Italy
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Adami G, Larese F, Venier M, Barbieri P, Lo Coco F, Reisenhofer E. Penetration of benzene, toluene and xylenes contained in gasolines through human abdominal skin in vitro. Toxicol In Vitro 2006; 20:1321-30. [PMID: 16829017 DOI: 10.1016/j.tiv.2006.05.008] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2005] [Revised: 04/27/2006] [Accepted: 05/12/2006] [Indexed: 10/24/2022]
Abstract
Few studies are available in literature on the risk for humans from skin exposure to gasolines. This work is focused on the in vitro skin penetration of benzene (carcinogenic substance), toluene and xylenes. We examined three commercial gasolines using the Franz diffusion cells and human abdominal full thickness skin. Gasoline composition was determined using a multi-dimensional gas chromatographic (MDGC) technique. Aromatic compounds into the receptor fluid, consisting of saline solution were quantitated by a gas chromatography technique equipped with a flame ionization detector (GC-FID) and coupled with a headspace-solid phase micro extraction system (HS-SPME). Among the three substances, benzene showed the highest average apparent permeability coefficient (K(p)=43.8x10(-5)cmh(-1)) compared to toluene (K(p)=6.48x10(-5)cmh(-1)) and xylenes (K(p)=0.84x10(-5)cmh(-1)). This value could be explained by the lower boiling point and higher water solubility of benzene. Lag times were about 1h for benzene and 2h for toluene and xylenes. Averaged total recoveries in the receptor fluid were 0.43% of dose for benzene, 0.06% for toluene and 0.008% for xylenes. A statistical significative difference (Student's t-test, P<0.05) between the fluxes calculated for the three gasolines are noted only for xylene and for toluene between gasolines #1 (richer in aromatic compounds) and #3. The obtained apparent permeability coefficient are useful for determining the permeability of these aromatics components from gasolines of a different composition. Hands exposure risk, calculated using RfD and RfC as defined by US EPA, is critical for benzene. The risk of skin permeation of gasoline, and, in particular, of benzene, should be better evaluated for those workers who have a large potential for exposure. Adequate personal protective equipment should be used in the high exposure jobs, mainly for hands and forearms.
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Affiliation(s)
- G Adami
- Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, I-34127 Trieste, Italy.
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20
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Vracko M, Bandelj V, Barbieri P, Benfenati E, Chaudhry Q, Cronin M, Devillers J, Gallegos A, Gini G, Gramatica P, Helma C, Mazzatorta P, Neagu D, Netzeva T, Pavan M, Patlewicz G, Randić M, Tsakovska I, Worth A. Validation of counter propagation neural network models for predictive toxicology according to the OECD principles: a case study. SAR QSAR Environ Res 2006; 17:265-84. [PMID: 16815767 DOI: 10.1080/10659360600787650] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
The OECD has proposed five principles for validation of QSAR models used for regulatory purposes. Here we present a case study investigating how these principles can be applied to models based on Kohonen and counter propagation neural networks. The study is based on a counter propagation network model that has been built using toxicity data in fish fathead minnow for 541 compounds. The study demonstrates that most, if not all, of the OECD criteria may be met when modeling using this neural network approach.
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Affiliation(s)
- M Vracko
- European Chemical Beaureau, Institute for Health and Consumer Protection, European Commission Joint Research Centre, 21020 Ispra, Italy.
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21
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Viggiani A, Olivieri G, Siani L, Di Donato A, Marzocchella A, Salatino P, Barbieri P, Galli E. An airlift biofilm reactor for the biodegradation of phenol by Pseudomonas stutzeri OX1. J Biotechnol 2006; 123:464-77. [PMID: 16490274 DOI: 10.1016/j.jbiotec.2005.12.024] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2005] [Revised: 11/14/2005] [Accepted: 12/15/2005] [Indexed: 11/20/2022]
Abstract
Phenol bioconversion by Pseudomonas stutzeri OX1 using either free or immobilized cells was investigated with the aim of searching for optimal operating conditions of a continuous bioconversion process. The study was developed by analyzing: (a) free-cell growth and products of phenol bioconversion by batch cultures of P. stutzeri; (b) growth of P. stutzeri cells immobilized on carrier particles; (c) bioconversion of phenol-bearing liquid streams and the establishment and growth of an active bacterial biofilm during continuous operation of an internal-loop airlift bioreactor. We have confirmed that free Pseudomonas cultures are able to transform phenol through the classical meta pathway for the degradation of aromatic molecules. Data indicate that bacterial growth is substrate-inhibited, with a limiting phenol concentration of about 600 mg/L. Immobilization tests revealed that a stable bacterial biofilm can be formed on various types of solid carriers (silica sand, tuff, and activated carbon), but not on alumina. Entrapment in alginate beads also proved to be effective for P. stutzeri immobilization. Continuous bioconversion of phenol-bearing liquid streams was successfully obtained in a biofilm reactor operated in the internal-circulation airlift mode. Phenol conversion exceeded 95%. Biofilm formation and growth during continuous operation of the airlift bioreactor were quantitatively and qualitatively assessed.
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Affiliation(s)
- A Viggiani
- Dipartimento di Biologia Strutturale e Funzionale, Università degli Studi di Napoli, Federico II, Complesso Universitario di Monte S. Angelo, Via Cinthia, 80126 Napoli, Italy
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22
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Hofheinz RD, Porta C, Hartung G, Santoro A, Hanauske AR, Kutz K, Stern A, Barbieri P, Verdi E, Hehlmann R, Hochhaus A. BBR 3438, a novel 9-aza-anthrapyrazole, in patients with advanced gastric cancer: A phase II study group trial of the central European Society of Anticancer-Drug Research (CESAR). Invest New Drugs 2005; 23:363-8. [PMID: 16012796 DOI: 10.1007/s10637-005-1445-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
BBR 3438, a member of the 9-aza-anthrapyrazole family designed to decrease anthracycline dependent cardiotoxicity and to improve efficacy provided high in vivo activity in gastric carcinoma xenograft models. The present study was carried out to assess the efficacy and safety of BBR 3438 applied at a dose of 50 mg/m(2) four-weekly as an 1-hour infusion to pretreated patients with gastric cancer. Twenty-seven patients received at least one administration of BBR 3438. Lymph nodes and liver were the most common sites of metastases. A total of 94 cycles were administered (median 2, range 1-6). The main toxicity consisted of (worst per patient [%]; NCIC CTC grades 1/2/3/4) neutropenia 7/7/19/52 (one case of febrile neutropenia), stomatitis 15/19/4/-, nausea 22/26/7/-, vomiting 19/7/7/-, alopecia 15/33/-/-. Neutrophil nadir (520/mul) was reached after a median 15 days. The median time to recovery to < or = grade 1 neutropenia was 13.5 days. The median average cumulative dose of BBR 3438 was 166.8 mg, and the median dose intensity was 48.8 mg/m(2). Left ventricular ejection function (LVEF) was monitored with multiple-gated angiography (MUGA). Median LVEF values at baseline and at the end of cycle 2 were 67.5% and 65%, respectively, and no patient showed a relevant decrease of LVEF. In 25 patients evaluable for response no remission was observed. Four patients (16%) had stable disease. Median time to progression was 51 days, median overall survival was 64 days. In all, the feasibility and tolerability of BBR 3438 applied 4-weekly at a dose of 50 mg/m(2) was confirmed and neither relevant LVEF decreases nor hints of cardiac toxicity were observed. In terms of antitumor activity, BBR 3438 was found to be ineffective in the treatment of gastric cancer.
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Affiliation(s)
- R-D Hofheinz
- Onkologisches Zentrum, III. Medizinische Klinik, Fakultät für Klinische Medizin Mannheim, Universität Heidelberg, Germany.
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Maran E, Novic M, Barbieri P, Zupan J. Application of counterpropagation artificial neural network for modelling properties of fish antibiotics. SAR QSAR Environ Res 2004; 15:469-480. [PMID: 15669703 DOI: 10.1080/10629360412331297461] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The present study focuses on fish antibiotics which are an important group of pharmaceuticals used in fish farming to treat infections and, until recently, most of them have been exposed to the environment with very little attention. Information about the environmental behaviour and the description of the environmental fate of medical substances are difficult or expensive to obtain. The experimental information in terms of properties is reported when available, in other cases, it is estimated by standard tools as those provided by the United States Environmental Protection Agency EPISuite software and by custom quantitative structure-activity relationship (QSAR) applications. In this study, a QSAR screening of 15 fish antibiotics and 132 xenobiotic molecules was performed with two aims: (i) to develop a model for the estimation of octanol--water partition coefficient (logP) and (ii) to estimate the relative binding affinity to oestrogen receptor (log RBA) using a model constructed on the activities of 132 xenobiotic compounds. The custom models are based on constitutional, topological, electrostatic and quantum chemical descriptors computed by the CODESSA software. Kohonen neural networks (self organising maps) were used to study similarity between the considered chemicals while counter-propagation artificial neural networks were used to estimate the properties.
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Affiliation(s)
- E Maran
- Chemistry Department, University of Trieste, Trieste, Italy
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Cozzi S, Adami G, Barbieri P, Cantoni C, Catalano G, Crisciani F, Fiorotto V, Olivo P, Purini R, Raicich F, Reisenhofer E. Matching monitoring and modelling in the Gulf of Trieste. Mar Pollut Bull 2004; 48:587-592. [PMID: 14980474 DOI: 10.1016/j.marpolbul.2003.10.033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Affiliation(s)
- S Cozzi
- CNR, I.S.MAR--Sezione di Trieste, Viale Gessi 2, 34123 Trieste, Italy.
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Vraćko M, Szymoszek A, Barbieri P. Structure-Mutagenicity Study of 12 Trimethylimidazopyridine Isomers Using Orbital Energies and “Spectrum-like Representation” As Descriptors. ACTA ACUST UNITED AC 2004; 44:352-8. [PMID: 15032511 DOI: 10.1021/ci030420i] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The set of 12 trimethylimidazopyridine isomers with mutagenic potency toward two strains of Salmonella was treated in this study. Ten isomers with known mutagenic properties were taken to build the models. Fifteen molecular orbital energies, or a "spectrum-like" representation of 3D structures, were taken as descriptors. As modeling techniques the multiple linear regression and the counter propagation neural network were applied. Models were tested with the recall ability test and the leave-one-out cross-validation tests. For two isomers, which have not been synthesized yet, we report predicted values for both mutagenic potencies obtained with different models. The best models were found when unoccupied molecular orbital energies are among the descriptors.
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Affiliation(s)
- M Vraćko
- National Institute of Chemistry, Hajdrihova 19, Ljubljana, Slovenia.
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Scheulen M, Mross K, Peschel C, Unger C, Richly H, Camboni M, Barbieri P, Verdi E, Vincenzi B, Bernareggi A. 557 BBR 3576: phase I dose escalation study in patients with advanced solid tumors (a study with the participation of CESAR-EWIV). EJC Suppl 2003. [DOI: 10.1016/s1359-6349(03)90589-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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Zucchi M, Angiolini L, Borin S, Brusetti L, Dietrich N, Gigliotti C, Barbieri P, Sorlini C, Daffonchio D. Response of bacterial community during bioremediation of an oil-polluted soil. J Appl Microbiol 2003; 94:248-57. [PMID: 12534816 DOI: 10.1046/j.1365-2672.2003.01826.x] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
AIM To study the response of the bacterial community to bioremediation of a soil with an aged contamination of crude oil. METHODS AND RESULTS The bacterial community in laboratory soil columns during a 72-day biostimulation treatment was followed by analysing the number of total cultivable hydrocarbon-degrading bacteria, soil respiratory activity and the 16S-23S rDNA internal transcribed spacer homoduplex heteroduplex polymorphisms (ITS-HHP) of total soil bacterial DNA. ITS-HHP permits an estimate of both length and sequence polymorphism in a 16S-23S rDNA spacer population, using to advantage the homoduplex and heteroduplex fragments that are generated during PCR. The treatment, made by air sparging and biostimulation with a mineral nutrient and surfactant solution, resulted in a 39.5% decrease of the total hydrocarbon content. Within 4 days of treatment onset the bacterial community underwent a first phase of activation that led to a substantial increase in the observable diversity. Subsequently, after a 12-day period of stability, another activation phase was observed with further shifts of the community structure and an increase in the abundance and diversity of catechol-2,3-dioxygenase (C23O) genes. CONCLUSIONS The overall data suggest an important contribution of uncultivable bacteria to the soil bioremediation, since, during the second activation phase, the increases of the respiratory activity, bacterial diversity and C23O gene abundance and diversity were not accompanied by a corresponding increase of the cultivable bacteria number. SIGNIFICANCE AND IMPACT OF THE STUDY This study shows that successive phases of activation of bacterial populations occur during a bioremediation treatment of oil-polluted soil.
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Affiliation(s)
- M Zucchi
- Dipartimento di Scienze e Tecnologie Alimentari e Microbiologiche, DISTAM, Università degli Studi, Milano, Italy
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Adami G, Barbieri P, Fabiani M, Piselli S, Predonzani S, Reisenhofer E. Levels of cadmium and zinc in hepatopancreas of reared Mytilus galloprovincialis from the Gulf of Trieste (Italy). Chemosphere 2002; 48:671-677. [PMID: 12201197 DOI: 10.1016/s0045-6535(02)00196-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Cadmium and zinc concentrations were determined in hepatopancreatic tissues of Mytilus galloprovincialis, reared in three non-contaminated hatcheries of the Gulf of Trieste (Northern Adriatic Sea). Mussels were collected in 13 sampling exits with monthly frequency for verifying possible seasonal variations. Freeze dried hepatopancreatic tissues were dissolved by nitric acid procedure using a microwave system; analysis of Zn and Cd followed by AAS technique. Metal concentrations were below the critical values for mollusc soft tissues, but xenobiotic cadmium had values requiring monitoring attention. Cadmium and zinc showed moderate variations along the months, with a slight winter maximum followed by a summer pre-spawning minimum, matching the seasonal trends of temperature/salinity. The estuarine site appears to have the best quality of the examined area in terms of metal contents. The results can constitute a guideline for the water quality in the Northern Adriatic Sea, and permit comparisons with the quality of other areas of the Mediterranean Sea.
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Affiliation(s)
- G Adami
- Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, I-34127 Trieste, Italy.
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Arenghi FL, Barbieri P, Bertoni G, de Lorenzo V. New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates. EMBO Rep 2001; 2:409-14. [PMID: 11375933 PMCID: PMC1083886 DOI: 10.1093/embo-reports/kve092] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The regulation of the tou operon of Pseudomonas stutzeri OX1, for degradation of toluene and o-xylene via phenolic intermediates, has been faithfully reconstructed in vitro with purified proteins. The set-up included the prokaryotic enhancer-binding protein TouR, the sigma54-dependent PToMO promoter and the sigma54-containing RNA polymerase. With this system we prove that direct binding of 2-methylphenol (o-cresol) to TouR is the only regulatory step for activation of PToMO in response to aromatic effectors, thereby ruling out the involvement of other factors or a need for protein processing. In addition, we found that while TouR failed entirely to activate PToMO in the absence of inducers, the protein had per se a very significant ATPase activity, which was only moderately increased by o-cresol addition. The results presented here support the view that TouR-like proteins are particularly suitable as evolutionary assets to endow recently evolved pathways for the degradation of environmental pollutants with an optimal degree of transcriptional regulation.
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Affiliation(s)
- F L Arenghi
- Dipartimento di Genetica e Biologia dei Microrganismi, Università degli Studi di Milano, via Celoria 26, 20133 Milan, Italy
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Adami G, Siviero P, Barbieri P, Piselli S, Reisenhofer E. Case study of groundwater pollution in a critical area of the Southern-Friuli exposed to agricultural and landfill pressures. Ann Chim 2001; 91:531-40. [PMID: 11770153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
Abstract
Groundwater of the Southern-Friuli displays high levels of agricultural pollutants, such as nitrates and triazinic herbicides not only in the surficial layers, but also in the deeper ones, below 150 m. Some wells of the district of Gonars was monitored. The examined waters, used for irrigation but also for drinkable use, are exposed to environmental risk due to both agricultural practices and presence of many waste disposal sites. Heavy metals, nitrates and triazinic herbicides were measured in samples taken at four wells in three periods having different rain conditions. We found that groundwater quality is affected mainly by agricultural practices: nitrates and triazines are present at levels very near as well as superior to the maximum concentration allowable by Italian law. These agricultural contaminants have similar levels at all sampled sites: no difference was detected between dry periods and rain ones. Heavy metal contents are negligible in all cases; this fact suggests that ion-exchange, sorbing and complexing properties of the soils hinder the way of the metal leachates towards underlying groundwater. Zinc constitutes an exception; it is found at levels near or superior to the maximum allowable concentration (CMA), and the highest contents are observed in rain periods; different sites display different zinc levels, suggesting that this metal could have various point sources. Nitrates fertilisers were found in all sites at similar levels, very near to CMA (50 mg/L). Triazines are specific herbicides for corn growing, highly diffused here: their use in recent years is forbidden by Italian law, but the presence in groundwater of parent triazines and metabolites is a persistent problem of this area. The Italian law indicates a CMA of 0.10 microgram/L for the sum of atrazine and desethylatrazine, but we found that desethylatrazine by itself exceeds largely CMA in all sites.
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Affiliation(s)
- G Adami
- Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy.
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Ryoo D, Shim H, Arenghi FL, Barbieri P, Wood TK. Tetrachloroethylene, trichloroethylene, and chlorinated phenols induce toluene-o-xylene monooxygenase activity in Pseudomonas stutzeri OX1. Appl Microbiol Biotechnol 2001; 56:545-9. [PMID: 11549035 DOI: 10.1007/s002530100675] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Pseudomonas stutzeri OX1 naphthalene-oxidation activity is induced 3.0-fold by tetrachloroethylene (PCE) and 3.1-fold by trichloroethylene (TCE) at 100 microM. With the mutant P. stutzeri M1, which does not express toluene-o-xylene monooxygenase (ToMO, product of the tou operon), no naphthalene-oxidation activity induction by PCE and TCE was found; hence, PCE and TCE induce ToMO of P. stutzeri OX1. The chlorinated phenols 2-, 3-, and 4-chlorophenol induced ToMO expression 0.58-, 0.23- and 0.37-fold, respectively, compared to the direct inducer of the pathway, o-cresol. Using P. putida PaW340 (pPP4062, pFP3028), which has the tou promoter fused to the reporter catechol-2,3-dioxygenase, and the regulator gene touR, it was determined that the tou promoter was induced directly 5.7-, 7.1-, and 5.1-fold for 2-, 3-, and 4-chlorophenol, respectively (compared to an 8.8-fold induction with o-cresol). In addition, it was found that TCE and PCE do not directly induce the tou pathway and that components other than the tou structural and regulatory genes are necessary for induction. Gas chromatography results also showed that 100 microM TCE induced its own degradation (8-9%) in 16 h in P. stutzeri OX1, and all of the stoichiometric chloride from the degraded TCE was detected in solution.
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Affiliation(s)
- D Ryoo
- Department of Chemical Engineering, University of Connecticut, Storrs 06269-3222, USA
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Adami G, Miletić M, Siviero P, Barbieri P, Reisenhofer E. Metal contents in tench otoliths: relationships to the aquatic environment. Ann Chim 2001; 91:401-8. [PMID: 11554178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
A monitoring of the quality of waters was attempted determining metal accumulation in target organs as otoliths of freshwater fish. Tenchs of age ranging between 2 and 10 years were sampled in three different canals receiving wastewater from industrial, agricultural and urban activities. Metal contents were determined in both lapilli and asterisci otoliths, using inductively coupled plasma-atomic emission spectroscopy (ICP-AES). Analytical data are reported for minor metals and for some trace metals. Al, Fe and Zn have contents depending on the environment where the fish has lived, while Na, K, Ca and Sr contents are insensitive to the different aquatic habitat. Considering the two types of otolith separately, lapilli display a different affinity for trace metals (Al, Fe and Zn), while in asterisci this affinity is matched only for zinc. The high affinity of zinc for both types of otoliths suggests using this metal for discriminating the fresh waters by checking its accumulation in otoliths, as well as correlating this accumulation with age of the fish: a negative power curve equation is proposed. Since highest concentrations are found in individuals of 2-3 yr., it is advisable to use this fish for such environmental studies.
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Affiliation(s)
- G Adami
- Department of Chemical Sciences, University of Trieste, Via Giorgieri 1, I-34127 Trieste, Italy.
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Shim H, Ryoo D, Barbieri P, Wood TK. Aerobic degradation of mixtures of tetrachloroethylene, trichloroethylene, dichloroethylenes, and vinyl chloride by toluene-o-xylene monooxygenase of Pseudomonas stutzeri OX1. Appl Microbiol Biotechnol 2001; 56:265-9. [PMID: 11499942 DOI: 10.1007/s002530100650] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A recombinant strain of Escherichia coli (JM109/pBZ1260) expressing constitutively toluene-o-xylene monooxygenase (ToMO) of Pseudomonas stutzeri OX1 degraded binary mixtures (100 microM each) of tetrachloroethylene (PCE) with either trichloroethylene (TCE), 1,1-dichloroethylene (1,1-DCE), cis-dichloroethylene (cis-DCE), trans-1,2-dichloroethylene (trans-DCE), or vinyl chloride (VC). PCE degradation was 8-20% for these binary mixtures, while TCE and trans-DCE with PCE were degraded at 19%, 1,1-DCE at 37%, cis-DCE at 97%, and VC at 27%. The host P. stutzeri OXI was also found to degrade binary mixtures of PCE/TCE, PCE/cis-DCE, and PCE/VC when induced with toluene. Degradation of quaternary mixtures of PCE/TCE/trans-DCE/VC and PCE/TCE/cis-DCE/VC by JM109/pBZ1260 were also investigated as well as mixtures of PCE/TCE/trans-DCE/1,1-DCE/cis-DCE/VC; when all the chlorinated compounds were present, the best degradation occurred with 24-51% removal of each. For these degradation reactions, 39-85% of the stoichiometric chloride expected from complete degradation of the chlorinated ethenes was detected. The time course of PCE/TCE/1,1-DCE degradation was also measured for a mixture of 8, 17, and 6 microM, respectively; initial degradation rates were 0.015, 0.023. and 0.029 nmol/min x mg protein, respectively. This indicates that for the first time an aerobic enzyme can degrade mixtures of all chlorinated ethenes, including the once--so it was believed-completely recalcitrant PCE.
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Affiliation(s)
- H Shim
- Department of Chemical Engineering, University of Connecticut, Storrs, 06269-3222, USA
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Arenghi FL, Berlanda D, Galli E, Sello G, Barbieri P. Organization and regulation of meta cleavage pathway genes for toluene and o-xylene derivative degradation in Pseudomonas stutzeri OX1. Appl Environ Microbiol 2001; 67:3304-8. [PMID: 11425758 PMCID: PMC93017 DOI: 10.1128/aem.67.7.3304-3308.2001] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Pseudomonas stutzeri OX1 meta pathway genes for toluene and o-xylene catabolism were analyzed, and loci encoding phenol hydroxylase, catechol 2,3-dioxygenase, 2-hydroxymuconate semialdehyde dehydrogenase, and 2-hydroxymuconate semialdehyde hydrolase were mapped. Phenol hydroxylase converted a broad range of substrates, as it was also able to transform the nongrowth substrates 2,4-dimethylphenol and 2,5-dimethylphenol into 3,5-dimethylcatechol and 3,6-dimethylcatechol, respectively, which, however, were not cleaved by catechol 2,3-dioxygenase. The identified gene cluster displayed a gene order similar to that of the Pseudomonas sp. strain CF600 dmp operon for phenol catabolism and was found to be coregulated by the tou operon activator TouR. A hypothesis about the evolution of the toluene and o-xylene catabolic pathway in P. stutzeri OX1 is discussed.
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Affiliation(s)
- F L Arenghi
- Dipartimento di Genetica e di Biologia dei Microrganismi, Università degli Studi di Milano, Milano, Italy
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Barbieri P, Arenghi FL, Bertoni G, Bolognese F, Galli E. Evolution of catabolic pathways and metabolic versatility in Pseudomonas stutzeri OX1. Antonie Van Leeuwenhoek 2001; 79:135-40. [PMID: 11519999 DOI: 10.1023/a:1010238403295] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Pseudomonas stutzeri OX1 is able to degrade toluene and ortho-xylene via the direct oxygenation of the aromatic ring. The genetic studies carried out suggest that the genes coding for the monooxygenase involved in the early steps of this catabolic route have been acquired by gene transfer. P stutzeri OX1 is also potentially able to utilize meta- and para-xylene as growth substrates. These two isomers are metabolized through a different pathway (TOL pathway). Both catabolic routes can be activated or inactivated by means of genomic rearrangements. The relevance of such recombination mechanisms in the evolution and the adaptability of P. stutzeri is discussed.
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Affiliation(s)
- P Barbieri
- Dipartimento di Genetica e di Biologia dei Microorganismi, Università degli Studi di Milano, Italy.
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Scognamiglio R, Notomista E, Barbieri P, Pucci P, Dal Piaz F, Tramontano A, Di Donato A. Conformational analysis of putative regulatory subunit D of the toluene/o-xylene-monooxygenase complex from Pseudomonas stutzeri OX1. Protein Sci 2001; 10:482-90. [PMID: 11344317 PMCID: PMC2374142 DOI: 10.1110/ps.35701] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Abstract
A gene cluster isolated from Pseudomonas stutzeri OX1 genomic DNA and containing six ORFs codes for toluene/o-xylene-monooxygenase. The putative regulatory D subunit was expressed in Escherichia coli and purified. Its protein sequence was verified by mass spectrometry mapping and found to be identical to the sequence predicted on the basis of the DNA sequence. The surface topology of subunit D in solution was probed by limited proteolysis carried out under strictly controlled conditions using several proteases as proteolytic probes. The same experiments were carried out on the homologous P2 component of the multicomponent phenol hydroxylase from Pseudomonas putida CF600. The proteolytic fragments released from both proteins in their native state were analyzed by electrospray mass spectrometry, and the preferential cleavage sites were assessed. The results indicated that despite the relatively high similarity between the sequences of the two proteins, some differences in the distribution of preferential proteolytic cleavages were detected, and a much higher conformational flexibility of subunit D was inferred. Moreover, automatic modeling of subunit D was attempted, based on the known three-dimensional structure of P2. Our results indicate that, at least in this case, standard modeling procedures based on automatic alignment on the structure of P2 fail to produce a model consistent with limited proteolysis experimental data. Thus, it is our opinion that reliable techniques such as limited proteolysis can be employed to test three-dimensional models and highlight problems in automatic model building.
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Affiliation(s)
- R Scognamiglio
- Dipartimento di Chimica Organica e Biologica, Universitá di Napoli Federico II, Via Mezzocannone, 16, 80134 Naples, Italy
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Gronda E, Mangiavacchi M, Frigerio M, Oliva F, Andreuzzi B, Paolucci M, Masciocco G, Comerio G, Piccalò G, Moreo A, Gabrielli D, Barbieri P. Determination of candidacy for mechanical circulatory support: importance of clinical indices. J Heart Lung Transplant 2000; 19:S83-8. [PMID: 11016494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023] Open
Affiliation(s)
- E Gronda
- DeGasperis Department of Cardiology, Ospedale Niguarda Ca' Granda, Milan, Italy
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Ryoo D, Shim H, Canada K, Barbieri P, Wood TK. Aerobic degradation of tetrachloroethylene by toluene-o-xylene monooxygenase of Pseudomonas stutzeri OX1. Nat Biotechnol 2000; 18:775-8. [PMID: 10888848 DOI: 10.1038/77344] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Tetrachloroethylene (PCE) is thought to have no natural source, so it is one of the most difficult contaminants to degrade biologically. This common groundwater pollutant was thought completely nonbiodegradable in the presence of oxygen. Here we report that the wastewater bacterium Pseudomonas stutzeri OX1 degrades aerobically 0. 56 micromol of 2.0 micromol PCE in 21 h (Vmax approximately 2.5 nmol min(-1) mg(-1) protein and KM approximately 34 microM). These results were corroborated by the generation of 0.48 micromol of the degradation product, chloride ions. This degradation was confirmed to be a result of expression of toluene-o-xylene monooxygenase (ToMO) by P. stutzeri OX1, since cloning and expressing this enzyme in Escherichia coli led to the aerobic degradation of 0.19 micromol of 2.0 micromol PCE and the generation of stoichiometric amounts of chloride. In addition, PCE induces formation of ToMO, which leads to its own degradation in P. stutzeri OX1. Degradation intermediates reduce the growth rate of this strain by 27%.
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Affiliation(s)
- D Ryoo
- Department of Chemical Engineering, University of Connecticut, Storrs, CT 06269-3222, USA
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Adami G, Barbieri P, Piselli S, Predonzani S, Reisenhofer E. Detecting and characterising sources of persistent organic pollutants (PAHs and PCBs) in surface sediments of an industrialized area (harbour of Trieste, northern Adriatic Sea). J Environ Monit 2000; 2:261-5. [PMID: 11256710 DOI: 10.1039/b000995o] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A sediment sampling based on a two-dimensional mapping was performed in the harbour of Trieste (northern Adriatic Sea), considering 28 sites exposed to pollutant inputs from harbour and industrial activities. Polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) were determined in surface sediments, because these very persistent pollutants seem to be responsible for the depletion of benthic populations observed in this area. The correlation matrix indicates that PAHs and PCBs are non-correlated, and probably have different sources. Both cluster analysis performed on the sampling sites and graphical drawing of the PAH sediment contents make it possible to locate along the shoreline a band of more polluted sediments, clustered around a site facing a steelmaking factory, to be considered as the main source point for PAHs. The evaluation of phenanthrene to anthracene (P/AN) and fluoranthene to pyrene (FL/PY) ratios permits the assessment of the pyrolytic, industrial origin of these PAHs, rejecting a second possible source of hydrocarbons (i.e., an oil-pipeline terminal, situated near the steelmaking factory). Graphical drawing of the total PCB iso-concentrations reveals a different source-point for this other category of very persistent pollutants.
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Affiliation(s)
- G Adami
- Department of Chemical Sciences, University of Trieste, Italy
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Abstract
OBJECTIVES The increased use of glycol ethers (GEs) for water-based paints and cleaning products, combined with a lack of information about many of these products, particularly with regard to the effects of percutaneous exposure, led us to evaluate the skin absorption rates of a group of glycol ethers in vitro. METHODS Skin permeation was calculated using the Franz cell method with human skin. A physiological solution was used as the receiving phase. The amount of solvent passing through the skin was analysed with a gas chromatographic technique employing flame ionization detection. A permeation profile was obtained and steady state, lag time and permeation constant flux was calculated for each of the following solvents: ethylene glycol monoethyl ether (EGMEE), propylene glycol mono-methyl ether (PGMME); propylene glycol mono-methyl ether acetate (PGMMEac); 2-propylene glycol 1-butyl ether (2PG1BE), ethylene glycol dimethyl ether (EGDME), ethylene glycol diethyl ether (EGDEE) and diethylene glycol dimethyl ether (DEGDME). All solvents were tested in their pure form and with 70% acetone. RESULTS For all solvents tested the lag time was less than 2 h, and for the majority of them was about 60 min. Flux at steady state ranged between 0.017 +/- 0.005 and 3.435 +/- 1.897 mg/cm(2)/h and permeation rate was from 0.0192 to 1.02 x 10(-3) cm/h. The presence of acetone in the solution caused a reduction in lag time and an increase in permeation rate, higher for EGMEE, lower for EGDEE, indicating the enhancing effect of this mixture of solvents. CONCLUSIONS Our results confirm the high percutaneous absorption of the GEs tested. The Franz method might be helpful for obtaining a grading of skin notation for hydrophilic substances: in the case of glycol ethers, it can give us precise information about permeation risk, particularly important in the evaluation of exposure. In the case of solvents with high dermal absorption, the air concentration is no longer a sufficient measure of the total exposure to workers, and therefore merely respecting threshold limit values (TLVs) in the air is not necessarily enough to protect them.
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Affiliation(s)
- F Larese Filon
- Istituto di Medicina del Lavoro, Università di Trieste, Via della Pietà 19, I-34129 Trieste, Italy.
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Barbieri P, Andersson C, Massart D, Predonzani S, Adami G, Reisenhofer E. Modeling bio-geochemical interactions in the surface waters of the Gulf of Trieste by three-way principal component analysis (PCA). Anal Chim Acta 1999. [DOI: 10.1016/s0003-2670(99)00418-3] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Arenghi FL, Pinti M, Galli E, Barbieri P. Identification of the Pseudomonas stutzeri OX1 toluene-o-xylene monooxygenase regulatory gene (touR) and of its cognate promoter. Appl Environ Microbiol 1999; 65:4057-63. [PMID: 10473416 PMCID: PMC99741 DOI: 10.1128/aem.65.9.4057-4063.1999] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Toluene-o-xylene monooxygenase is an enzymatic complex, encoded by the touABCDEF genes, responsible for the early stages of toluene and o-xylene degradation in Pseudomonas stutzeri OX1. In order to identify the loci involved in the transcriptional regulation of the tou gene cluster, deletion analysis and complementation studies were carried out with Pseudomonas putida PaW340 as a heterologous host harboring pFB1112, a plasmid that allowed regulated expression, inducible by toluene and o-xylene and their corresponding phenols, of the toluene-o-xylene monooxygenase. A locus encoding a positive regulator, designated touR, was mapped downstream from the tou gene cluster. TouR was found to be similar to transcriptional activators of aromatic compound catabolic pathways belonging to the NtrC family and, in particular, to DmpR (83% similarity), which controls phenol catabolism. By using a touA-C2,3O fusion reporter system and by primer extension analysis, a TouR cognate promoter (P(ToMO)) was mapped, which showed the typical -24 TGGC, -12 TTGC sequences characteristic of sigma(54)-dependent promoters and putative upstream activating sequences. By using the reporter system described, we found that TouR responds to mono- and dimethylphenols, but not the corresponding methylbenzenes. In this respect, the regulation of the P. stutzeri system differs from that of other toluene or xylene catabolic systems, in which the hydrocarbons themselves function as effectors. Northern analyses indicated low transcription levels of tou structural genes in the absence of inducers. Basal toluene-o-xylene monooxygenase activity may thus transform these compounds to phenols, which then trigger the TouR-mediated response.
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Affiliation(s)
- F L Arenghi
- Dipartimento di Genetica e di Biologia dei Microrganismi, Università degli Studi di Milano, 20133 Milan, Italy
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Gronda EG, Barbieri P, Frigerio M, Mangiavacchi M, Oliva F, Quaini E, Andreuzzi B, Garascia A, De Vita C, Pellegrini A. Prognostic indices in heart transplant candidates after the first hospitalization triggered by the need for intravenous pharmacologic circulatory support. J Heart Lung Transplant 1999; 18:654-63. [PMID: 10452341 DOI: 10.1016/s1053-2498(99)00020-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Patients with heart failure refractory to optimal oral pharmacologic therapy have a dismal short term prognosis. Heart transplantation is the only therapy shown to improve survival in these patients. Unfortunately, due to the critical shortage of donor organs, approximately 30% of listed patients with end-stage heart failure die before a suitable donor heart becomes available. The principal aim of this study was to determine whether intravenous pharmacologic circulatory support favorably influences the clinical course of heart transplant candidates or whether mechanical circulatory support should be instituted in this high risk patient population. METHODS Data from 154 consecutive hospitalizations in 125 patients 49+/-12 years were retrospectively reviewed. The product limit method was used to estimate survival. Multiple logistic regression analysis was used to identify the clinical and hemodynamic variables that independently predict outcome after each admission in which heart transplantation did not occur. RESULTS One year survival for the study population was 65%. This survival is significantly lower than the 91% 1 year survival in similarly ill patients undergoing heart transplantation. The Cox proportional hazard method identified serum bilirubin, blood urea nitrogen (BUN), serum sodium levels and right atrial pressure as independent prognostic indices. Serum bilirubin, BUN levels and duration of intravenous pharmacologic circulatory support were associated with a poor outcome. A composite index including serum bilirubin and BUN levels predicted outcome with a sensitivity and specificity of 79% and 77%, respectively. The addition of pharmacologic support duration increased the model's sensitivity to 95%, but did not significantly alter specificity that was 74%. Of the 125 patients hospitalized due to the need to initiate intravenous pharmacologic support for the first time (index hospitalization), 69 (55%) were discharged after optimization of medical therapy. Of 21 patients who did not undergo transplantation during the follow-up period, 18 (86%) died within 2 years of the index hospitalization. The duration of intravenous pharmacologic support beyond which prognosis dramatically worsens without heart transplantation is 21 days. CONCLUSION Heart transplant candidates who require intravenous pharmacologic circulatory support for more than 21 days and do not receive a suitable donor heart within this period of time have a high mortality. Alternative therapies, such as implantation of a mechanical circulatory assist device should be considered in this high risk population.
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Affiliation(s)
- E G Gronda
- Department of Cardiology, 1st Division, A. De Gasperis Center, Niguarda Hospital, Milan, Italy
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Bolognese F, Di Lecce C, Galli E, Barbieri P. Activation and inactivation of Pseudomonas stutzeri methylbenzene catabolism pathways mediated by a transposable element. Appl Environ Microbiol 1999; 65:1876-82. [PMID: 10223973 PMCID: PMC91270 DOI: 10.1128/aem.65.5.1876-1882.1999] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/1998] [Accepted: 02/23/1999] [Indexed: 11/20/2022] Open
Abstract
The arrangement of the genes involved in o-xylene, m-xylene, and p-xylene catabolism was investigated in three Pseudomonas stutzeri strains: the wild-type strain OX1, which is able to grow on o-xylene but not on the meta and para isomers; the mutant M1, which grows on m-xylene and p-xylene but is unable to utilize the ortho isomer; and the revertant R1, which can utilize all the three isomers of xylene. A 3-kb insertion sequence (IS) termed ISPs1, which inactivates the m-xylene and p-xylene catabolic pathway in P. stutzeri OX1 and the o-xylene catabolic genes in P. stutzeri M1, was detected. No IS was detected in the corresponding catabolic regions of the P. stutzeri R1 genome. ISPs1 is present in several copies in the genomes of the three strains. It is flanked by 24-bp imperfect inverted repeats, causes the direct duplication of 8 bp in the target DNA, and seems to be related to the ISL3 family.
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Affiliation(s)
- F Bolognese
- Dipartimento di Genetica e di Biologia dei Microrganismi, Università degli Studi di Milano, 20133 Milan, Italy
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Barbieri P, Adami G, Predonzani S, Reisenhofer E, Massart DL. Survey of environmental complex systems: pattern recognition of physicochemical data describing coastal water quality in the Gulf of Trieste. J Environ Monit 1999; 1:69-74. [PMID: 11529083 DOI: 10.1039/a807528j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A data set reporting temperature, salinity, dissolved oxygen, nitrogen as ammonia, nitrite and nitrate, silicate, chlorophyll a and phaeopigment values, determined in seawaters sampled during two years with a monthly frequency in 16 stations in the Gulf of Trieste, and at different depths of the water column, has been studied. In order to find synthetic descriptors useful for following the spatial and temporal variations of biogeochemical phenomena occurring in the considered ecosystem, the data set has been factorized using principal component analysis. A graphical display of scores, by means of boxplots and biplots, helped in the interpretation of the data set. The first factor conditioning the system is related to the input of freshwater from the estuary of the Isonzo River and to the stratification of the seawater (thermohaline discontinuity), while the second and third components describe interactions between biological activity, nutrients and physicochemical parameters; typical spring and autumn phytoplankton blooms were identified, in addition to an exceptional winter bloom conditioned by anomalous meteorological/climatic conditions. The fourth principal component explains the reducing activity of seawaters, which often increases when the decomposition of organic matter is relevant. The simple linear model proposed, and the related graphs, are shown to be useful tools for monitoring the main features of such a complex dynamic environmental system. The outlined approach to the considered complex data structure presents in a cognitive easy way (graphical outputs) the significant variations of the data, and allows for a detailed interpretation of the results of the monitoring campaign. Temporal and spatial effects are outlined, as well as those related to the depth in the water column.
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Affiliation(s)
- P Barbieri
- Department of Chemical Sciences, University of Trieste, via L. Giorgieri 1, I-34127, Trieste, Italy
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Bertoni G, Martino M, Galli E, Barbieri P. Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1. Appl Environ Microbiol 1998; 64:3626-32. [PMID: 9758777 PMCID: PMC106479 DOI: 10.1128/aem.64.10.3626-3632.1998] [Citation(s) in RCA: 101] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The toluene/o-xylene monooxygenase cloned from Pseudomonas stutzeri OX1 displays a very broad range of substrates and a very peculiar regioselectivity, because it is able to hydroxylate more than one position on the aromatic ring of several hydrocarbons and phenols. The nucleotide sequence of the gene cluster coding for this enzymatic system has been determined. The sequence analysis revealed the presence of six open reading frames (ORFs) homologous to other genes clustered in operons coding for multicomponent monooxygenases found in benzene- and toluene-degradative pathways cloned from Pseudomonas strains. Significant similarities were also found with multicomponent monooxygenase systems for phenol, methane, alkene, and dimethyl sulfide cloned from different bacterial strains. The knockout of each ORF and complementation with the wild-type allele indicated that all six ORFs are essential for the full activity of the toluene/o-xylene monooxygenase in Escherichia coli. This analysis also shows that despite its activity on both hydrocarbons and phenols, toluene/ o-xylene monooxygenase belongs to a toluene multicomponent monooxygenase subfamily rather than to the monooxygenases active on phenols.
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Affiliation(s)
- G Bertoni
- Dipartimento di Genetica e di Biologia dei Microrganismi, Università degli Studi di Milano, 20133 Milan, Italy
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Chauhan S, Barbieri P, Wood TK. Oxidation of trichloroethylene, 1,1-dichloroethylene, and chloroform by toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1. Appl Environ Microbiol 1998; 64:3023-4. [PMID: 9687467 PMCID: PMC106809 DOI: 10.1128/aem.64.8.3023-3024.1998] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/1998] [Accepted: 06/08/1998] [Indexed: 02/08/2023] Open
Abstract
Toluene/o-xylene monooxygenase (ToMO) from Pseudomonas stutzeri OX1, which oxidizes toluene and o-xylene, was examined for its ability to degrade the environmental pollutants trichloroethylene (TCE), 1, 1-dichloroethylene (1,1-DCE), cis-1,2-DCE, trans-1,2-DCE, chloroform, dichloromethane, phenol, 2,4-dichlorophenol, 2,4,5-trichlorophenol, 2,4,6-trichlorophenol, 2,3,5,6-tetrachlorophenol, and 2,3,4,5, 6-pentachlorophenol. Escherichia coli JM109 that expressed ToMO from genes on plasmid pBZ1260 under control of the lac promoter degraded TCE (3.3 microM), 1,1-DCE (1.25 microM), and chloroform (6.3 microM) at initial rates of 3.1, 3.6, and 1.6 nmol/(min x mg of protein), respectively. Stoichiometric amounts of chloride release were seen, indicating mineralization (2.6, 1.5, and 2.3 Cl- atoms per molecule of TCE, 1,1-DCE, and chloroform, respectively). Thus, the substrate range of ToMO is extended to include aliphatic chlorinated compounds.
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Affiliation(s)
- S Chauhan
- Department of Chemical and Biochemical Engineering, University of California, Irvine, California 92697-2575, USA
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Abstract
The two mer operons of the Pseudomonas stutzeri OX plasmid pPB and their flanking regions have been sequenced and found to be part of two aberrant transposons. The narrow spectrum mer operon is almost identical to that of Tn501, but is associated with the remnants of Tn5053 tni genes rather than the Tn501 transposition module. The broad spectrum mer operon shows an overall homology with that of Tn5053, but differs from it in the presence of a merB gene, absent in Tn5053, and a merC gene instead of a merF. The pPB broad spectrum mer operon is associated with an incomplete Tn5053-like transposition module and with the Tn501 tnp genes, which are proximal, respectively, to the end and to the beginning of the mer operon. A hypothesis about pPB evolution is presented.
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Affiliation(s)
- D Reniero
- Dipartimento di Genetica e di Biologia dei Microrganismi, Università degli Studi di Milano, via Celoria 26, 20133, Milan, Italy
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Gronda E, Frigeno M, Mangiavacchi M, Vitali E, Oliva F, Andreuzzi B, Comerio G, Masciocco G, Barosi A, Barbieri P, Pellegrini A. Long term effectiveness of urgent heart transplantation (HTx) compared with elective HTx. J Am Coll Cardiol 1998. [DOI: 10.1016/s0735-1097(98)81734-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Sismondi P, Danese S, Giardina G, Guercio E, Richiardi G, Carnino F, Ferraris C, Lissoni A, Inganni P, Maggi R, Boccardo E, Barbieri P. Antiemetic efficacy of granisetron in patients with gynecological malignancies. Anticancer Drugs 1997; 8:225-30. [PMID: 9095326 DOI: 10.1097/00001813-199703000-00002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The efficacy and tolerability of granisetron in the management of acute and delayed emesis was compared with that of a multiple antiemetic drug combination regimen, including metoclopramide, dexamethasone, lorazepam and orphenadrine. The trial was a randomized, cross-over study involving 111 patients with gynecological cancers undergoing chemotherapy with cisplatin. Granisetron was significantly more effective than the combination regimen during the first 24 h after chemotherapy; complete response, rates were 67 and 48%, respectively (p = 0.002). There was a significant reduction in the effectiveness of the combination during the second treatment cycle, compared with the first. In contrast, the efficacy of granisetron did not differ between the two cycles. The response rate during the 6 days after chemotherapy was 40.8% in both groups. At the end of the study, 55% of patients preferred granisetron and 23% preferred the combination (p < 0.001). Granisetron was well tolerated. The principal adverse event was headache, which was reported in 7% of patients. The results of this study confirm that granisetron is effective in the treatment of cisplatin-induced nausea and vomiting during the 24 h after chemotherapy.
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Affiliation(s)
- P Sismondi
- Institute of Gynaecology and Obstetrics, University of Turin, Italy
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