Avian Assemblages in Forest Fragments do not Sum to the Expected Regional Community in the Brazilian Atlantic Forest

While bird diversity in the Atlantic Forest can be considered well-known, how the communities have been affected by deforestation and habitat fragmentation is not. We studied birds in 10 forest fragments of distinct sizes (all originally within the Atlantic Forest) in southern Bahia. In 5,391 bird encounters, we found 251 species, with 46 endemics and eight considered globally vulnerable or endangered. We also compiled a list of the 380 species that should comprise the expected regional assemblage, and found that only 66% of these species were present in all the fragments combined. Only 9% of all observed species were found in all fragments. The largest fragment (700 ha) had the greatest number of endemic species (40), and seven threatened species. All fragments had some conservation-important species (some were found in one or a few fragments), but no fragment included them all. Fragments shared 10% of endemic species, but overall, the contingent of endemics was unique in each fragment. Finally, most functional traits of bird assemblages decreased with increasing fragment size. Neither species richness nor similarity correlated with fragment size or distance between fragments, and unknown, non-random factors probably influence the likelihood of species survival in each fragment. Thus, to ensure the persistence of threatened species, as well as maintain the most common species, conservation management decisions should include all fragments together because no single fragment is most representative of the local community.

An ornithological inventory in a reforested woodlot in western Paraná state, southern Brazil

This paper presents an ornithological inventory taken between March and December of 2017 in the Brazilian state of Paraná. Although the surroundings contain one relatively well-known location in regard to ornithology, Iguaçu National Park, several other areas merit exploration, among them the Santa Helena Relevant Ecological Interest Area (ARIE‑SH). The 1,479 ha ARIE‑SH is essentially a large remnant of the Atlantic Forest located adjacent to the city of Santa Helena, Paraná, which commencing in the 1980s has undergone considerable reforestation with both native and exotic species, including fruit species. Prior to censusing bird species and to better characterize the avian community, we conducted a bibliographic review of earlier ornithological studies carried out at ARIE‑SH. In addition, we conducted opportunistic and unsystematic observations in nearby locations. We recorded 311 species of birds. During the current inventory, and others conducted in the area since 2016, we recorded six Atlantic Forest endemic species, five species threatened in Paraná, and two globally threatened species. Common species which showed high Index of Frequency in Lists include (in descending order) Basileuterus culicivorus, Leptotila verreauxi, Cnemotriccus fuscatus, Corythopis delalandi, Turdus leucomelas and Arremon flavirostris. Nine species observed while conducting this census (Laterallus exilis, Amazona vinacea, Herpsilochmus longirostris, Campylorhamphus trochilirostris, Casiornis rufus, Campylorhynchus turdinus, Myiothlypis flaveola, Eucometis penicillata and Sporophila palustris) are the first records for this region.

NEOTROPICAL CARNIVORES: a data set on carnivore distribution in the Neotropics

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non-detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non-governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peer-reviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non-detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio-temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other large-scale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

ATLANTIC BIRD TRAITS: a data set of bird morphological traits from the Atlantic forests of South America

Scientists have long been trying to understand why the Neotropical region holds the highest diversity of birds on Earth. Recently, there has been increased interest in morphological variation between and within species, and in how climate, topography, and anthropogenic pressures may explain and affect phenotypic variation. Because morphological data are not always available for many species at the local or regional scale, we are limited in our understanding of intra- and interspecies spatial morphological variation. Here, we present the ATLANTIC BIRD TRAITS, a data set that includes measurements of up to 44 morphological traits in 67,197 bird records from 2,790 populations distributed throughout the Atlantic forests of South America. This data set comprises information, compiled over two centuries (1820-2018), for 711 bird species, which represent 80% of all known bird diversity in the Atlantic Forest. Among the most commonly reported traits are sex (n = 65,717), age (n = 63,852), body mass (n = 58,768), flight molt presence (n = 44,941), molt presence (n = 44,847), body molt presence (n = 44,606), tail length (n = 43,005), reproductive stage (n = 42,588), bill length (n = 37,409), body length (n = 28,394), right wing length (n = 21,950), tarsus length (n = 20,342), and wing length (n = 18,071). The most frequently recorded species are Chiroxiphia caudata (n = 1,837), Turdus albicollis (n = 1,658), Trichothraupis melanops (n = 1,468), Turdus leucomelas (n = 1,436), and Basileuterus culicivorus (n = 1,384). The species recorded in the greatest number of sampling localities are Basileuterus culicivorus (n = 243), Trichothraupis melanops (n = 242), Chiroxiphia caudata (n = 210), Platyrinchus mystaceus (n = 208), and Turdus rufiventris (n = 191). ATLANTIC BIRD TRAITS (ABT) is the most comprehensive data set on measurements of bird morphological traits found in a biodiversity hotspot; it provides data for basic and applied research at multiple scales, from individual to community, and from the local to the macroecological perspectives. No copyright or proprietary restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications or teaching and educational activities.

An overlooked hotspot for birds in the Atlantic Forest

Montane and submontane forest patches in the state of Bahia, Brazil, are among the few large and preserved Atlantic Forests remnants. They are strongholds of an almost complete elevational gradient, which harbor both lowland and highland bird taxa. Despite being considered a biodiversity hotspot, few ornithologists have surveyed these forests, especially along elevational gradients. Here we compile bird records acquired from systematic surveys and random observations carried out since the 1980s in a 7,500 ha private protected area: Serra Bonita private reserve. We recorded 368 species, of which 143 are Atlantic Forest endemic taxa. Some 16 and 13 species are threatened at the global and national levels, respectively. If one accounts for subspecies, the number of Brazilian threatened taxa raises to 21. Species composition differs between lower and higher elevations, in which case lowlands harbor Amazonia-related taxa, whereas highlands are the home of Atlantic Forest-related taxa.

Records of the Ornate Hawk-eagle, Spizaetus ornatus (Daudin, 1800) (Accipitridae), from the state of São Paulo, southeastern Brazil

We review the distribution of the Ornate Hawk-eagle, Spizaetus ornatus (Daudin, 1800), in the state of São Paulo, reporting localities with records of the species. Most locations where the species has been historically documented have no recent records, especially to the west of the large remnants of forest in the coastal mountain ranges. Most current records come from Serra de Paranapiacaba, southwestern São Paulo, whereas no records exist within the Cerrado domain. Unlike the neighboring state of Minas Gerais, where it is found in fragmented landscapes, in São Paulo, the species occurs exclusively within protected areas in large blocks of Atlantic Forest.

ATLANTIC BIRDS: a data set of bird species from the Brazilian Atlantic Forest

South America holds 30% of the world's avifauna, with the Atlantic Forest representing one of the richest regions of the Neotropics. Here we have compiled a data set on Brazilian Atlantic Forest bird occurrence (150,423) and abundance samples (N = 832 bird species; 33,119 bird individuals) using multiple methods, including qualitative surveys, mist nets, point counts, and line transects). We used four main sources of data: museum collections, on-line databases, literature sources, and unpublished reports. The data set comprises 4,122 localities and data from 1815 to 2017. Most studies were conducted in the Florestas de Interior (1,510 localities) and Serra do Mar (1,280 localities) biogeographic sub-regions. Considering the three main quantitative methods (mist net, point count, and line transect), we compiled abundance data for 745 species in 576 communities. In the data set, the most frequent species were Basileuterus culicivorus, Cyclaris gujanensis, and Conophaga lineata. There were 71 singletons, such as Lipaugus conditus and Calyptura cristata. We suggest that this small number of records reinforces the critical situation of these taxa in the Atlantic Forest. The information provided in this data set can be used for macroecological studies and to foster conservation strategies in this biodiversity hotspot. No copyright restrictions are associated with the data set. Please cite this Data Paper if data are used in publications and teaching events.

Museum collections indicate bird defaunation in a biodiversity hotspot

Abstract Ipanema National Forest, southeastern Brazil, once contained 340 bird species. Forest cover suffered for centuries from log exploitation and, as a result, most of the remaining forests are now an impoverished subset of the original vegetation. We show how the bird community changed over time by comparing historical and recent records. Currently, 228 species can be recorded, for a compilation of 410 species, of which 359 are documented. Some 89 forest species with historical records failed to be detected in recent surveys. Of the 72 Atlantic Forest or Cerrado endemic species, no more than 29 (40%) are still found. The bird community changed from one which used to be related to coastline rain forests to another, which relates more to drier semideciduous forests of the interior.

A new look at the holotype and type locality of Setopagis maculosa (Todd, 1920) Aves: Caprimulgidae), with remarks on its systematic relationships

Setopagis maculosa (Todd, 1920) (Aves: Caprimulgidae) was described based on a single male specimen collected by Samuel Milton Klages in French Guiana, northeastern South America. Since then, no new specimens have been collected nor have any reliable records been made, and the validity of the species has been questioned. A detailed analysis of the holotype reveals that it has unique and distinctive morphological traits that support the validity and taxonomic status of the species, which is provisionally placed in Setopagis. We present new information on the type locality at the time of its collection, which may shed some light on the habitat preferences of the species, and we provide details on its plumage that have been largely overlooked and that will be important for future field identification.

Comparação quantitativa da comunidade de aves de um fragmento de floresta semidecidual do interior do Estado de São Paulo em intervalo de 30 anos

Poucos estudos avaliaram em longo prazo a variação no tamanho populacional das espécies de aves em fragmentos florestais. Para avaliar a riqueza e a abundância específica da comunidade de aves de um remanescente de mata semidecidual do interior do Estado de São Paulo, sudeste do Brasil, foi conduzido o censo da avifauna florestal utilizando-se a metodologia de contagem em transecção. Estes resultados foram comparados com levantamento realizado na mesma localidade 30 anos antes, e as aves foram classificadas de acordo com suas categorias alimentares com a finalidade de associá-las à tendência ao aumento/diminuição de suas abundâncias após este intervalo de tempo. Embora tenha havido predominância de espécies com diminuição populacional, todas as categorias tróficas analisadas apresentaram também espécies com aumento em suas abundâncias. A maioria das espécies com propensão a deslocarem-se entre fragmentos apresentou diminuição em suas abundâncias. Sugerimos que, em relação a suas abundâncias específicas, as categorias tróficas são igualmente afetadas pelos processos da fragmentação, e que a regeneração florestal sofrida pelo remanescente pode ter resultado na perda de espécies de bordas. Espécies cujas abundâncias tenham reduzido neste intervalo de tempo podem sofrer extinção local futuramente.

List of documented bird species from the municipality of Ubatuba, state of São Paulo, Brazil

Although preliminary surveys have been conducted at the Atlantic Forest of Ubatuba, there is no list of documented bird records from this coastline municipality. To organize such a compilation, we searched the literature and a number of different sources for all documented records of birds from Ubatuba, state of São Paulo. We further carried out a 7-year non-systematic bird inventory in different regions and elevations to document the species within the municipality. The total number of documented bird species is 417, 11% of which are endemic to Brazil. Another 26% are Atlantic Forest endemics and as many as 60 species are under threat categories, including near-threatened birds, in the state. Some 49 species of 27 families are reported from the municipality but still lack documentation. Considering historical records, no species have extinguished from the municipality. Ubatuba is one of the most studied regions along Serra do Mar in São Paulo regarding its ornithology, but there are still high-elevational gaps that will yield significant additions of species to the area with increasing surveying efforts.

On the use of 10-minute point counts and 10-species lists for surveying birds in lowland Atlantic Forests in southeastern Brazil

Due to rapid and continuous deforestation, recent bird surveys in the Atlantic Forest are following rapid assessment programs to accumulate significant amounts of data during short periods of time. During this study, two surveying methods were used to evaluate which technique rapidly accumulated most species (> 90% of the estimated empirical value) at lowland Atlantic Forests in the state of São Paulo, southeastern Brazil. Birds were counted during the 2008-2010 breeding seasons using 10-minute point counts and 10-species lists. Overall, point counting detected as many species as lists (79 vs. 83, respectively), and 88 points (14.7 h) detected 90% of the estimated species richness. Forty-one lists were insufficient to detect 90% of all species. However, lists accumulated species faster in a shorter time period, probably due to the nature of the point count method in which species detected while moving between points are not considered. Rapid assessment programs in these forests will rapidly detect more species using 10-species lists. Both methods shared 63% of all forest species, but this may be due to spatial and temporal mismatch between samplings of each method.

Birds from cerradão woodland, an overlooked forest of the Cerrado region, Brazil

The Cerrado region still receives relatively little ornithological attention, although it is regarded as the only tropical savanna in the world considered to be a biodiversity hotspot. Cerradão is one of the least known and most deforested Cerrado physiognomies and few recent bird surveys have been conducted in these forests. In order to rescue bird records and complement the few existing inventories of this under-studied forest type in the state of São Paulo, we looked for published papers on birds of cerradão. Additionally we surveyed birds at a 314-ha cerradão remnant located in central São Paulo, Brazil, from September 2005-December 2006 using unlimited distance transect counts. Out of 95 investigations involving cerradão bird studies, only 17 (18%) investigations teased apart bird species recorded inside cerradão from those recorded in other physiognomies of Cerrado. Except for one study, no research found more than 64 species in this type of forest, a result shared within many regions from Brazil and Bolivia. Differences in species richness do not seem be related with levels of disturbance of landscape or fragment size. Considering all species recorded in cerradão in Brazil and Bolivia, a compilation of data accumulated 250 species in 36 families and 15 orders. In recent surveys at central São Paulo, we recorded 48 species in 20 families, including the Pale-bellied Tyrant-Manakin Neopelma pallescens, threatened in São Paulo, and the Helmeted Manakin Antilophia galeata, near threatened in the state and endemic to the Cerrado region. Among the most abundant species inside this fragment, none was considered to be neither threatened nor endemic.

Avifauna da Estação Ecológica dos Caetetus, interior de São Paulo, Brasil

A Estação Ecológica dos Caetetus possui um dos maiores remanescentes de mata estacional semidecídua ainda presentes no Estado de São Paulo. Poucos estudos foram realizados nessa localidade, extremamente importante no que diz respeito às aves da Mata Atlântica do interior do Estado. Para caracterizar a avifauna da estação com dados recentes e contribuir com novos registros, foi realizado um levantamento da avifauna utilizando-se o método de Pontos de Escuta entre outubro de 2005 e dezembro de 2006. Foram registradas 226 espécies enquanto diversos autores registraram outras 68, para um total de 293. Muitas espécies são endêmicas da Mata Atlântica ou do Cerrado e algumas são ameaçadas no Estado, justificando a existência dessa unidade de conservação e provando a necessidade de inventários em longo prazo e da preservação de fragmentos de mata estacional semidecídua nativa.