Camera trap surveys of Atlantic Forest mammals: A data set for analyses considering imperfect detection (2004-2020)

Camera traps became the main observational method of a myriad of species over large areas. Data sets from camera traps can be used to describe the patterns and monitor the occupancy, abundance, and richness of wildlife, essential information for conservation in times of rapid climate and land-cover changes. Habitat loss and poaching are responsible for historical population losses of mammals in the Atlantic Forest biodiversity hotspot, especially for medium to large-sized species. Here we present a data set from camera trap surveys of medium to large-sized native mammals (>1 kg) across the Atlantic Forest. We compiled data from 5380 ground-level camera trap deployments in 3046 locations, from 2004 to 2020, resulting in 43,068 records of 58 species. These data add to existing data sets of mammals in the Atlantic Forest by including dates of camera operation needed for analyses dealing with imperfect detection. We also included, when available, information on important predictors of detection, namely the camera brand and model, use of bait, and obstruction of camera viewshed that can be measured from example pictures at each camera location. Besides its application in studies on the patterns and mechanisms behind occupancy, relative abundance, richness, and detection, the data set presented here can be used to study species' daily activity patterns, activity levels, and spatiotemporal interactions between species. Moreover, data can be used combined with other data sources in the multiple and expanding uses of integrated population modeling. An R script is available to view summaries of the data set. We expect that this data set will be used to advance the knowledge of mammal assemblages and to inform evidence-based solutions for the conservation of the Atlantic Forest. The data are not copyright restricted; please cite this paper when using the data.

How do different concentrations of aluminum and zinc affect the survival, body size, morphology and immune system of Physalaemus cuvieri (Fitzinger, 1826) tadpole?

The assessment of amphibian responses as bioindicators of exposure to chemical pollutants is an important tool for conservation of native species. This study aimed to investigate the effects of chronic aluminum (Al) and zinc (Zn) exposure on survival, body size, morphology (malformations), and immune system (leukocyte profile) in P. cuvieri tadpoles. Ecotoxicological analyses were performed utilizing chronic toxicity tests in which 210 tadpoles at the 25th Gosner developmental stage were exposed to Al and Zn. Individuals of P. cuvieri were maintained in glass containers containing various concentrations of aluminum sulfate (0.1, 0.2, or 0.3 mg/L) and zinc sulfate (0.18, 0.27 or 0.35 mg/L), and tests were performed in triplicate. After 14 days, amphibians were weighed, measured and survival rate, malformations in the oral and intestine apparatus, leukocyte profile, and ratio between neutrophils and lymphocytes determined. The differing concentrations of Al and Zn did not produce lethality in P. cuvieri where 95% of the animals survived 326 hr following metal exposure. Individuals exposed to Zn achieved greater body growth and weight gain compared to controls. Aluminum increased weight gain compared controls. These metals also produced malformations of the oral and intestine apparatus and enhanced occurrence of hemorrhages, especially at the highest doses. Lymphocytes were the predominant cells among leukocytes, with lymphopenia and neutrophilia observed following Al and Zn treatment, as evidenced by elevated neutrophil/lymphocyte ratio, an important indicator of stress in animals. Data suggest that further studies need to be carried out, even with metal concentrations higher than those prescribed by CONAMA, to ensure the conservation of this species.

2,4-D-based herbicide underdoses cause mortality, malformations, and nuclear abnormalities in Physalaemus cuvieri tadpoles

Amphibians are considered bioindicators of the environment due to their high sensitivity and involvement in terrestrial and aquatic ecosystems. In the last two decades, 2,4-D has been one of the most widely used herbicides in Brazil and around the world, as its use has been authorized for genetically modified crops and therefore has been detected in surface and groundwater. Against this background, the aim of this work was to investigate the effects of environmentally relevant concentrations of 2,4-D-based herbicides on survival, malformations, swimming activity, presence of micronuclei and erythrocyte nuclear abnormalities in Physalaemus cuvieri tadpoles. The amphibians were exposed to six concentrations of 2,4-D-based herbicides: 0.0, 4.0, 30.0, 52.5, 75.0, and 100 μg L-1, for 168 h. At concentrations higher than 52.5 μg L-1, significantly increased mortality was observed from 24 h after exposure. At the highest concentration (100 μg L-1), the occurrence of mouth and intestinal malformations was also observed. The occurrence of erythrocyte nuclear abnormalities at concentrations of 30.0, 52.5, 75.0 and 100 μg L-1 and the presence of micronuclei at concentrations of 52.5, 75.0, and 100 μg L-1 were also recorded. These effects of 2,4-D in P. cuvieri indicate that the ecological risk observed at concentrations above 10.35 μg L-1 2,4-D may represent a threat to the health and survival of this species, i.e., exposure to 2,4-D at concentrations already detected in surface waters in the species' range is toxic to P. cuvieri.

Bird Fauna Composition in a Protected Area in Southern Brazil

The integrity of natural landscapes is affected by human actions, mainly by the intensification and expansion of agriculture. Factors such as fragment size and the structure of the environment can determine changes in the structure and composition of bird assemblages. In this study we evaluated the bird species composition in three structurally different forest environments, defined as the Core areas, Edge areas, and Buffer areas. The surveys were performed in the Natural Park of Sertão (NPS) and its surroundings in the southern limit of the Atlantic Forest, southern Brazil. To record species composition of birds, the point count method was used. The bird species were categorized according to feeding habits, habitat use, and sensitivity to forest fragmentation. A total of 131 species of birds distributed in 18 orders and 38 families were recorded. The species composition varied between the three areas and there was a significant difference in diversity between the Core and Edge areas and the Core and Buffer areas. Omnivorous species were found more in the Buffer areas than in the Core areas. Species that use the Broad habitat were more frequent in the Buffer and Edge areas than in the Core areas. Species that use the Forest habitat were found more in the Core areas than in the Buffer areas. Most recorded species (66%) have low sensitivity to forest fragmentation. The assemblage patterns found in this study, notably the differences among the three areas in diversity and species composition, can be explained by the ecological traits and the sensitivity levels of birds to forest fragmentation, which in turn seem to reflect different forest structures in the NPS and its surroundings. Although the Edge and Buffer areas have greater diversity, the Core areas showed great importance in maintaining species that are more sensitive to forest fragmentation. Even the largest fragments (such as the NPS), considering the regional context, may have bird species that are widely distributed and less sensitive to forest fragmentation. Forested habitat species may no longer occur or be restricted to the core area of the fragments. For conservation of bird fauna in the NPS, the maintenance of the core areas is essential, especially for those species that require a structurally preserved environment.

Mortality and toxicity of a commercial formulation of cypermethrin in Physalaemus gracilis tadpoles

This study evaluated the lethal, sublethal, and toxic of a commercial formulation of cypermethrin in the anuran species Physalaemus gracilis. In the acute test, concentrations of 100-800 μg L-1 were tested over 96 h. In the chronic test, cypermethrin concentrations recorded in nature (1, 3, 6, and 20 μg L-1) were tested for mortality and then used for the micronucleus test and erythrocyte nuclear abnormalities over a 7-days period. The LC50 determined for P. gracilis for the commercial cypermethrin formulation was 273.41 μg L-1. In the chronic test, a mortality of more than 50% was observed at the highest concentration (20 μg L-1), as it caused half of the tadpoles studied to die. The micronucleus test showed significant results at concentrations of 6 and 20 μg L-1 and recorded the presence of several nuclear abnormalities, indicating the genotoxic potential of the commercial cypermethrin formulation for P. gracilis. Cypermethrin presented a high risk to the species, indicating that it has the potential to cause several problems in the short and long term and to affect the dynamics of this ecosystem. Therefore, it can be concluded that the commercial formulation of cypermethrin had toxicological effects on P. gracilis.

Response of small mammal species to landscape metrics in a highly fragmented area in the Atlantic forest of southern Brazil

The high rate of destruction of natural habitats has diminished fragments size, which negatively impacts small mammal community species richness and composition. We investigated the abundance of small non-flying mammal species in association with three landscape metrics: the size of the fragment (AREA); the shape index of the fragment (SHAPE); and the size of the central area of the fragment (CORE) in six forest fragments in a highly fragmented landscape of southern Brazil. Three rodent species (Akodon montensis, Oligoryzomys nigripes, Sooretamys angouya) and one marsupial species (Gracilinanus microtarsus) were captured in total. We used generalized linear models to test the influence of the landscape metrics on the abundance of the three most abundant species of small mammals captured (A. montensis, O. nigripes and S. angouya). Among the three species analyzed, A. montensis presented a significant negative association with the metric CORE; O. nigripes and S. angouya presented a positive association with the metric AREA and negative with the metric CORE. The negative association of A. montensis, O. nigripes and S. angouya with the core area of the fragments, and the absence of association of all species with the shape of the fragments indicate that these species might benefit from the effects of habitat fragmentation.

Morphological, behavioral and genotoxic effects of glyphosate and 2,4-D mixture in tadpoles of two native species of South American amphibians

Pesticide contamination is an important factor in the global decline of amphibians. The herbicides glyphosate and 2,4-D are the most applied worldwide. These herbicides are often found in surface waters close to agricultural areas. This study aims at evaluating the chronic effects caused by glyphosate + 2,4-D mixture in Boana faber and Leptodactylus latrans tadpoles. The combined solution of the glyphosate and 2,4-D, in 5 different concentrations, was applied for 168 h. Herbicide mixtures did not affect the survival of the exposed tadpoles but growth and swimming activity were altered; besides causing several damages in the mouth and intestine. The erythrocytes showed micronuclei and other nuclear abnormalities. There is an ecological risk in the exposure of tadpoles of B. faber and L. latrans from the mixture of glyphosate + 2,4-D. Therefore, the approach used in this study provides important information on how commonly used pesticides can affect non-target organisms.

Genotoxic effects of glyphosate on Physalaemus tadpoles

Genotoxicity studies have revealed that pesticides bind to genetic material in non-target vertebrates, thereby impairing the genetic integrity of these animals. The main objective of this study was to determine the genotoxic damage in erythrocytes of two native South American amphibian Physalaemus cuvieri and Physalaemus gracilis, both species exposed to a glyphosate-based herbicide. We evaluated the presence of micronuclei (MN) and erythrocyte nuclear abnormalities (ENA) as biomarkers for potential genotoxic compounds. Tadpoles were exposed to doses permitted by Brazilian legislation and concentrations found naturally in Brazilian and Argentinian waters (500, 700 and 1000 μg/L). Glyphosate-based herbicide caused micronuclei formation and several types of erythrocyte nuclear abnormalities in both Physalaemus species. The total frequency of MN and ENA demonstrated the occurrence of cell damage at all tested concentrations. Glyphosate herbicide can be considered a genotoxic that may impact the genetic integrity of native populations of P. cuvieri and P. gracilis.

NEOTROPICAL CARNIVORES: a data set on carnivore distribution in the Neotropics

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non-detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non-governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peer-reviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non-detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio-temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other large-scale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

Can environmental concentrations of glyphosate affect survival and cause malformation in amphibians? Effects from a glyphosate-based herbicide on Physalaemus cuvieri and P. gracilis (Anura: Leptodactylidae)

Herbicides are the most common agrochemicals used in crops. Among them, glyphosate is the most widely applied in the world. Herbicides, especially organophosphates, have been shown to be hazardous to non-target species, including amphibians. The present study evaluated the acute and chronic effects of glyphosate-based herbicide (GBH), Roundup original® DI on tadpoles from two South American native species, Physalaemus cuvieri and P. gracilis. Spawnings were collected in the natural environment and maintained in the laboratory under controlled conditions. Acute and chronic toxicology trials began at stage 25 of Gosner (Herpetological 16:183-190, 1960). In an acute toxicity assay, seven GBH concentrations between 100 and 4500 μg a.e./L were tested over 96 h. For the chronic trials, tadpoles were subjected to both doses allowed by Brazilian legislation and to concentrations found in natural environment waters from Brazil and Argentina, between 65 and 1000 μg a.e/L over 14 days. Glyphosate had lethal effects on both studied species. Tadpoles showed shorter lengths and lower masses; that is, those that survived suffered chronic effects on growth and weight. The GBH maximum acceptable toxicant concentration for mortality and malformation was lower than the allowed level for Brazilian waters. The GBH tested in this study presented a high environmental and acute risk for the two studied species.

NEOTROPICAL XENARTHRANS: a data set of occurrence of xenarthran species in the Neotropics

Xenarthrans-anteaters, sloths, and armadillos-have essential functions for ecosystem maintenance, such as insect control and nutrient cycling, playing key roles as ecosystem engineers. Because of habitat loss and fragmentation, hunting pressure, and conflicts with domestic dogs, these species have been threatened locally, regionally, or even across their full distribution ranges. The Neotropics harbor 21 species of armadillos, 10 anteaters, and 6 sloths. Our data set includes the families Chlamyphoridae (13), Dasypodidae (7), Myrmecophagidae (3), Bradypodidae (4), and Megalonychidae (2). We have no occurrence data on Dasypus pilosus (Dasypodidae). Regarding Cyclopedidae, until recently, only one species was recognized, but new genetic studies have revealed that the group is represented by seven species. In this data paper, we compiled a total of 42,528 records of 31 species, represented by occurrence and quantitative data, totaling 24,847 unique georeferenced records. The geographic range is from the southern United States, Mexico, and Caribbean countries at the northern portion of the Neotropics, to the austral distribution in Argentina, Paraguay, Chile, and Uruguay. Regarding anteaters, Myrmecophaga tridactyla has the most records (n = 5,941), and Cyclopes sp. have the fewest (n = 240). The armadillo species with the most data is Dasypus novemcinctus (n = 11,588), and the fewest data are recorded for Calyptophractus retusus (n = 33). With regard to sloth species, Bradypus variegatus has the most records (n = 962), and Bradypus pygmaeus has the fewest (n = 12). Our main objective with Neotropical Xenarthrans is to make occurrence and quantitative data available to facilitate more ecological research, particularly if we integrate the xenarthran data with other data sets of Neotropical Series that will become available very soon (i.e., Neotropical Carnivores, Neotropical Invasive Mammals, and Neotropical Hunters and Dogs). Therefore, studies on trophic cascades, hunting pressure, habitat loss, fragmentation effects, species invasion, and climate change effects will be possible with the Neotropical Xenarthrans data set. Please cite this data paper when using its data in publications. We also request that researchers and teachers inform us of how they are using these data.

Acute and chronic toxicity of pesticides on tadpoles of Physalaemus cuvieri (Anura, Leptodactylidae)

Brazil is the largest consumer of pesticides in the world. However, knowledge on how these pesticides affect wildlife is scarce. Among the vertebrates, amphibians are particularly important in research to assess the impact of pesticides because of the correlation between pesticide and the decline of these species. This study aimed to evaluate the acute and chronic toxicity of commercial formulations of pesticides, i.e., atrazine (herbicide), cypermethrin (insecticide), and tebuconazole (fungicide) in Physalaemus cuvieri tadpoles. Eggs were collected in nature and cultivated under controlled conditions in the laboratory. Toxicity tests were carried out under standard conditions to determine the lethal concentration (LC₅₀) after 96 h of exposure and to determine the effect of sublethal concentrations after 7 days. In addition, we performed swimming activity tests on tadpoles exposed to sublethal concentrations. The lethal concentration (LC₅₀) was 19.69 mg/L for atrazine, 0.24 mg/L for cypermethrin and 0.98 mg/L for tebuconazole. In the acute test, atrazine showed lower toxicity than cypermethrin and tebuconazole for P. cuvieri. Swimming activity was affected at sublethal doses of atrazine and cypermethrin, but was not after exposure to tebuconazole. Cypermethrin was the insecticide that most altered the swimming activity of the individuals tested. The risk evaluation analysis indicated risks for tadpoles exposed to three tested pesticides, specially cypermethrin.

Proximidade de rodovias pode influenciar a fragmentação florestal? Um estudo de caso no norte do Rio Grande do Sul

http://dx.doi.org/10.5007/2175-7925.2016v29n3p21O estabelecimento e o uso das rodovias interferem na atmosfera, no solo, na vegetação, na fauna e nas comunidades humanas que estão em seu entorno. Um dos principais efeitos causados pela implantação e operação de uma rodovia é a fragmentação das paisagens naturais, que consequentemente gera o efeito de borda e o isolamento de populações. Nesse sentido, o objetivo deste estudo foi quantificar e comparar a distribuição da cobertura vegetal em áreas com e sem influência ecológica de rodovias na região do Alto Uruguai, norte do Rio Grande do Sul. Para tal, foi criado um banco de dados georrelacional, onde foram inseridas imagens de satélite Landsat V e CBERS 2b. Foi estimado o tamanho e quantidade de fragmentos florestais nas áreas com e sem influência das rodovias. A área com influência ecológica de rodovias apresentou menos fragmentos florestais e de menor tamanho quando comparada com a área sem influência ecológica. A alta fragmentação florestal parece ser potencializada pela proximidade das rodovias na região norte do Rio Grande do Sul, contribuindo para o isolamento e redução do tamanho das populações nativas que ocupam essas áreas.

Ecologia e história natural de uma taxocenose de serpentes no Núcleo Santa Virgínia do Parque Estadual da Serra do Mar, no sudeste do Brasil

O objetivo deste estudo foi obter informações sobre a história natural e a ecologia de uma taxocenose de serpentes na Mata Atlântica do alto da Serra do Mar, no Núcleo Santa Virgínia do Parque Estadual da Serra do Mar, nordeste do Estado de São Paulo, Brasil. Os principais aspectos estudados foram riqueza, abundância relativa, padrões de atividade diária e sazonal, utilização do ambiente e dieta. Também são fornecidas informações adicionais sobre outros aspectos da história natural das espécies. Um total de 148 indivíduos, de 27 espécies, 19 gêneros e quatro famílias foi encontrado dentro dos limites do Núcleo Santa Virgínia. As espécies mais frequentemente encontradas foram Bothrops jararaca, Xenodon neuwiedii e Liophis atraventer. A maior parte das espécies é predominantemente diurna e terrícola. Dentre os fatores abióticos analisados para a área de estudo, o mais relacionado à abundância das serpentes foi a temperatura mínima, seguido da temperatura média e da pluviosidade. A maioria das espécies encontradas apresenta dieta concentrada em uma categoria de presa ou restrita a poucos tipos de itens alimentares. Aparentemente, anfíbios anuros são o principal recurso alimentar para as taxocenoses de serpentes da Mata Atlântica do alto da Serra do Mar. Os nossos resultados indicam que a estrutura da taxocenose de serpentes do Núcleo Santa Virgínia reflete principalmente as características ecológicas da linhagem mais representada na taxocenose.