We're building it up to burn it down: fire occurrence and fire-related climatic patterns in Brazilian biomes

Background

Terrestrial biomes in South America are likely to experience a persistent increase in environmental temperature, possibly combined with moisture reduction due to climate change. In addition, natural fire ignition sources, such as lightning, can become more frequent under climate change scenarios since favourable environmental conditions are likely to occur more often. In this sense, changes in the frequency and magnitude of natural fires can impose novel stressors on different ecosystems according to their adaptation to fires. By focusing on Brazilian biomes, we use an innovative combination of techniques to quantify fire persistence and occurrence patterns over time and evaluate climate risk by considering key fire-related climatic characteristics. Then, we tested four major hypotheses considering the overall characteristics of fire-dependent, fire-independent, and fire-sensitive biomes concerning (1) fire persistence over time; (2) the relationship between climate and fire occurrence; (3) future predictions of climate change and its potential impacts on fire occurrence; and (4) climate risk faced by biomes.

Methods

We performed a Detrended Fluctuation Analysis to test whether fires in Brazilian biomes are persistent over time. We considered four bioclimatic variables whose links to fire frequency and intensity are well-established to assess the relationship between climate and fire occurrence by confronting these climate predictors with a fire occurrence dataset through correlative models. To assess climate risk, we calculated the climate hazard, sensitivity, resilience, and vulnerability of Brazilian biomes, and then we multiplied the Biomes' vulnerability index by the hazards.

Results

Our results indicate a persistent behaviour of fires in all Brazilian biomes at almost the same rates, which could represent human-induced patterns of fire persistence. We also corroborated our second hypothesis by showing that most fire-dependent biomes presented high thermal suitability to fire, while the fire-independent biome presented intermediate suitability and fire-sensitive biomes are the least suitable for fire occurrence. The third hypothesis was partially corroborated since fire-dependent and independent biomes are likely to increase their thermal suitability to fire, while fire-sensitive biomes are likely to present stable-to-decreasing thermal suitability in the future. Finally, our fourth hypothesis was partially corroborated since most fire-dependent biomes presented low climate risk, while the fire-independent biome presented a high risk and the fire-sensitive biomes presented opposite trends. In summary, while the patterns of fire persistence and fire occurrence over time are more likely to be related to human-induced fires, key drivers of burned areas are likely to be intensified across Brazilian biomes in the future, potentially increasing the magnitude of the fires and harming the biomes' integrity.

A three-year Herpetofauna survey from one of the largest remnants of the Atlantic Rainforest Biome (Reserva Natural Vale)

Here we present a three-year survey of amphibian and reptile species registered in the Vale Natural Reserve (VNR), located in the north of Espírito Santo, southeastern Brazil. The VNR, along with the Sooretama Biological Reserve (SBR) and other surrounding areas, form a forest block that constitutes one of the largest remnants of continuous forest in the Atlantic Forest biome. We systematically sampled the herpetofauna community from 2015 to 2018, using the method of active search method in 27 plots of RAPELD distributed in the different types of vegetation present in the area. We recorded 39 species of amphibians belonging to the order Anura, distributed in seven families and 40 species of reptiles belonging to 20 families distributed in three orders: Crocodylia, Testudines and Squamata. The supplementation the samplings with those records from occasional encounters was important for the survey of the region's herpetofauna, mainly for reptiles. We added four species (two lizards, one amphisbaenid and one snake) to the known list for the VNR-SBR forest block: Micrablepharus maximiliani, Strobilurus torquatus, Amphisbaena alba and Tantilla sp. We demonstrated that VNR contains a high species richness of amphibians and reptiles, with a high number of anurans being endemic to the Atlantic Forest biome. The present species inventory provided the most current approximation of known the richness and composition of species of the existing herpetofauna at Vale Natural Reserve, since the period of the gathering of records is quite recent (2015-2018). Also, it brings the knowledge of some community parameters as species richness and composition not only for the whole area of the Vale Natural Reserve, but also for its different vegetation types, with no inclusion of environments outside this reserve. Furthermore, the presence of threatened species, the addition of four species to the current list, and the potential for new species to occur, reinforce the role of VNR as an important area for the protection of amphibian and reptile biodiversity in the Atlantic Forest.

Random placement models explain species richness and dissimilarity of frog assemblages within Atlantic Forest fragments

Understanding the effects of random versus niche-based processes on biodiversity patterns is a central theme in ecology, and an important tool for predicting effects of habitat loss and fragmentation on biodiversity. We investigated the predictive power of random processes to explain species richness and species dissimilarity of amphibian assemblages in a fragmented tropical landscape of the Atlantic Forest of South America. We analyzed a large database of amphibian abundance and occupancy, sampled in 21 forest fragments ranging in size from 1.9 to 619 ha. We compared observed species richness and species dissimilarity with the outcomes of two null (random placement) models: 1- the traditional Coleman's area-based model and 2- an abundance-based model (based on the number of individuals observed in each fragment). We applied these models for all species combined, and separately for forest-dependent and habitat-generalist species. The abundance-based model fitted the observed species richness data better than the area-based model for all species, forest-dependent species, and generalist species. The area-based and the abundance-based models were also able to significantly explain species dissimilarity for all species and for generalists, but not for forest dependent species. The traditional area-based model assigned too many individuals to large fragments, thus failing to accurately explain species richness within patches across the landscape. Although niche-based processes may be important to structuring the regional pool of species in fragmented landscapes, our results suggest that part of the variation in species richness and species dissimilarity can be successfully explained by random placement models, especially for generalist species. Evaluating which factors cause variation in the number of individuals among patches should be a focus in future studies aiming to understand biodiversity patterns in fragmented landscapes.

Integration of the elements involved in scientific publication

The issue of publication of articles by researchers in the universe of scientific publications, has become over the last decades, increasingly asymmetrical among the parties involved (author, Author's institution, Development agencies, Magazine / Publisher, and referees). Here, I analyzed to what extent are all the parts involved in the process of scientific publication equally balanced, and the gains and losses among parts involved during the process. The analysis points that the gains and losses among parts involved are quite asymmetric. I conclude that there are advantages, disadvantages and costs that should be addressed at a global level to better balance the process of publication and that should have some adjustments to better balance of the parts involved in the process. All parts involved should search for a more equilibrated system of publishing, since, now, the system is strongly asymmetric among the parts involved in scientific publication. It is clear is that this is not a simple subject, but possible changes are quite simple and desirable.

A summary of reptile and anuran amphibian species from Brazilian sandy coastal plains: 31 years of sampling efforts of the "Laboratório de Ecologia de Vertebrados, Universidade do Estado do Rio de Janeiro"

Although currently there is already a set of studies regarding ecological aspects of some particular reptile and amphibian species living in Brazilian sandy coastal plains (including the so-called "restinga" and "campo nativo" habitats), there is comparatively few information on the species composition usually associated to these environments. During 31 years (1988-2019) of herpetological studies carried out in sandy coastal plains environments by our research team of the Laboratory of Vertebrate Ecology (Department of Ecology, Universidade do Estado do Rio de Janeiro, in Rio de Janeiro Brazil) we have surveyed reptile and amphibian communities and performed different studies with similar methods in 70 sites from 10 different states along the Brazilian coast. Our surveys resulted in records of 87 species of reptile (five turtles, two crocodylians, six amphisbaenians, 36 lizards and 39 snakes) from 24 families, and 77 species of anuran amphibians from nine families. We have studied multiple natural history topics for anurans and reptiles which resulted in the publication of some specific ecological studies, especially regarding some species, encompassing population and community ecology, foraging and feeding habits, species activity, thermoregulation, reproduction, use of microhabitats, and parasitism by ecto and endoparasites. Our results along these three decades have also contributed for the description of four new lizard species (Ameivula nativo, Glaucomastix littoralis, G. abaetensis and G. itabaianensis). Our studies constitute an important contribution to the knowledge of the ecology of anuran amphibians and reptiles in these ecosystems, as well as to the conservation of sandy coastal plains environment. The checklist presented in this study, based on our records of sandy coastal plains herpetofauna, provides for many localities along the Brazilian coast, the needed knowledge on species occurrence, including the presence of endemic and/or endangered species, which can be of value for many conservation actions.

Domestic dogs and water-availability effects on non-volant mammals in a protected area, south-eastern Brazil

Abstract ContextUrbanisation and human population growth can generate conflicts, threatening biodiversity. Resource availability and vegetation complexity owing to human influence may increase the potential that a habitat would lose its species. Conservation biology aims to understand how to soften human influence and maintain viable insitu populations. AimsWe evaluated the non-volant mammal’s richness and abundance in an Atlantic Forest protected area. Specifically, we tested (1) the effect of distance from water resource and vegetation (canopy and understorey cover) on richness and abundance and (2) the effects of anthropogenic pressure such as domestic dog abundance, distances from human settlements, and from the road on the community of non-volant mammals. MethodsWe collected the data from January through December of 2017 in 20 sampling sites by using live traps (for small mammals), active search, sand plots and camera traps. Key resultsWe recorded 22 species of non-volant mammals, among them four endemic, two endangered and two invasive exotic species. The main covariates that affected the structure and composition of the non-volant mammal’s assemblage was the domestic dog abundance, which repels most of the species into the forest and water resources, which attract the species to forest edges. ConclusionsOur results indicated that the negative impact of domestic dog presence in the non-volant mammal’s community is so evident that it could generate changes in the composition, richness, and local distribution of the species. ImplicationsWe suggest that management action in this protected area must initiate a control of domestic dogs to minimise their impact.

Amphibians of Serra das Torres Natural Monument: a reservoir of biodiversity in the Atlantic Forest of southeastern Brazil

Abstract The Brazilian Atlantic Forest holds a major part of the country’s amphibian species richness and high rates of endemism. In this study, we conducted surveys using the Rapid Assessment (RA) method to sample the amphibian fauna of the Serra das Torres Natural Monument (MONAST), an Atlantic Forest remnant in southeastern Brazil. We sampled actively with a 6-10-person team to collect standard samples from 09:00 to 12:00 hours for the daytime period, and from 18:00 to 22:00 hours for the crepuscular/nighttime period, with a total of approximately 1,320 hours of sampling effort. We supplemented these data with 720 hours of passive sampling, using pitfall traps with drift fences (30 bucket-days). We recorded 54 amphibian species (two gymnophionans and 52 anurans), and the species richness estimated by the Bootstrap method indicates that a slightly larger number of species (n = 60) may occur in the study area. The most speciose family was Hylidae (n = 21), followed by Brachycephalidae (n = 8). Overall, 25% of the species (n = 13) were recorded only once (singletons) and 15% (n = 8) only twice (doubletons). Most amphibians recorded in this study (71%, n = 37 species) were restricted to the Atlantic Forest biome, two species (Euparkerella robusta and Luetkenotyphlus fredi) are endemic to the Espírito Santo state, and one of them, the leaf litter species E. robusta, is endemic to the MONAST. Euparkerella robusta is currently listed as Vulnerable by the IUCN and is classified as Critically Endangered in the Espírito Santo State red list, while L. fredi has yet to be evaluated due to its recent description. Thoropa lutzi is currently listed as Endangered (EN) by both the IUCN and in the State list. Nine species are listed as Data Deficient (DD) and populations of 13 species are considered to be declining by the IUCN. We extend the geographical distribution of two anuran species (Hylodes babax and Phasmahyla lisbella) and fill an important gap in the distribution of Siphonops hardyi. Amphibians associated with the forest floor represented 42% of the species richness from MONAST, and 43% of these species inhabit the leaf litter exclusively. Our study revealed that Serra das Torres preserves a considerable diversity of Atlantic Forest amphibians, which reinforces the need for the conservation of this forest remnant.

Amphibians and reptiles from the Parque Nacional da Tijuca, Brazil, one of the world’s largest urban forests

Abstract: The Parque Nacional da Tijuca in Rio de Janeiro, Brazil, is considered to be one of the world’s largest urban forests, however no systematic inventory of its herpetofauna is available. In the present study, we surveyed the amphibians and reptiles of this park to assess its species composition (including secondary data) and obtain estimates of species richness and abundance. We conducted active searches (460 hours) between January 2013 and December 2015. We identified the taxa endemic to either the Atlantic Forest or Rio de Janeiro state, and verified the conservation status of each species in the international, Brazilian, and state red lists. We also estimated the species richness and sampling sufficiency by rarefaction curves and Bootstrap richness estimator, and analyzed the distribution of the species abundance in Whittaker plots. We recorded 3,288 individuals over 36 months, representing 24 species of amphibians and 25 reptiles. The cumulative species curves, rarefaction, and the richness estimated indicated that sampling effort was adequate. Species abundance adjusted to the log-series model in both amphibians and reptiles. The four most abundant amphibians represented 70% of the individuals recorded in this group, while the two most abundant reptiles represented 60% of the total individuals. The inclusion of the secondary data raised the number of amphibian species to 38, and the number of reptiles to 36. Approximately 80% of the amphibian species and 28% of the reptile species recorded are endemic to the Atlantic Forest, and six of the amphibian species are endemic to Rio de Janeiro state. Six amphibian species and one reptile species are classified under some threat of extinction, and two reptile species were exotic. The considerable diversity of the herpetofauna of the Parque Nacional da Tijuca, which includes endemic and threatened species, reflects the effectiveness of the reforestation of this protected area and emphasizes the importance of its conservation.

NEOTROPICAL CARNIVORES: a data set on carnivore distribution in the Neotropics

Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non-detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non-governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peer-reviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non-detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio-temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other large-scale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

NEOTROPICAL ALIEN MAMMALS: a data set of occurrence and abundance of alien mammals in the Neotropics

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive, it must be voluntarily or involuntarily introduced by humans into a nonnative habitat. Mammals were among first taxa to be introduced worldwide for game, meat, and labor, yet the number of species introduced in the Neotropics remains unknown. In this data set, we make available occurrence and abundance data on mammal species that (1) transposed a geographical barrier and (2) were voluntarily or involuntarily introduced by humans into the Neotropics. Our data set is composed of 73,738 historical and current georeferenced records on alien mammal species of which around 96% correspond to occurrence data on 77 species belonging to eight orders and 26 families. Data cover 26 continental countries in the Neotropics, ranging from Mexico and its frontier regions (southern Florida and coastal-central Florida in the southeast United States) to Argentina, Paraguay, Chile, and Uruguay, and the 13 countries of Caribbean islands. Our data set also includes neotropical species (e.g., Callithrix sp., Myocastor coypus, Nasua nasua) considered alien in particular areas of Neotropics. The most numerous species in terms of records are from Bos sp. (n = 37,782), Sus scrofa (n = 6,730), and Canis familiaris (n = 10,084); 17 species were represented by only one record (e.g., Syncerus caffer, Cervus timorensis, Cervus unicolor, Canis latrans). Primates have the highest number of species in the data set (n = 20 species), partly because of uncertainties regarding taxonomic identification of the genera Callithrix, which includes the species Callithrix aurita, Callithrix flaviceps, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Callithrix penicillata, and their hybrids. This unique data set will be a valuable source of information on invasion risk assessments, biodiversity redistribution and conservation-related research. There are no copyright restrictions. Please cite this data paper when using the data in publications. We also request that researchers and teachers inform us on how they are using the data.

Structure of the leaf litter frog community in an area of Atlantic Forest in southeastern Brazil

Different spatial and temporal factors can influence the species richness and abundance of leaf anurans that are fundamental for the ecosystem functioning, as they act as predators and integrate the trophic chain as prey of other animals. There are relatively few studies that aimed to understand the spatio-temporal variation and the influence of environmental factors on leaf litter communities. We studied parameters of the anuran community living in the forest leaf litter in the Duas Bocas Biological Reserve (DBBR), Espírito Santo, Brazil. We sought to understand the extent to which richness, abundance, biomass and density varied between two locations with different stages of preservation (primary and secondary forest). In addition, we tested the effect of temperature and local humidity on abundance. We conducted the samplings monthly from October 2017 to September 2018, establishing 98 4 x 4 m plots (16 m2 each) demarcated on the DBBR forest leaf litter. We measured temperature (°C) and relative air humidity (%), and each plot was carefully surveyed by four observers. We tested for differences in anuran density between the two sampled locations and estimated the effects of environmental variables in the community. We recorded 102 individuals of anurans from 11 species belonging to eight families. The DBBR anuran community parameters significantly differed between the two studied locations, with the highest values of anuran richness and abundance occurring in the area covered by primary forest, probably due to differences in the preservation of each area. However, temperature and humidity did not affect the abundance of anurans in the sampled areas. Our results provide the first information about spatial variation and influence of environmental factors, directed to the community of leaf litter anurans in DBBR, and represents the second study on this group of anurans in the state of Espírito Santo.

Do restinga cnemidophorine lizards run on empty along the Brazilian coast?

The number of individuals with empty stomachs in a population (i.e. the proportion of individuals "running on empty") can be used as a simple index of instantaneous energy balance of some organisms such as lizards and fishes. In this study, we aimed to analyze the proportion of empty stomachs in 16 populations of five cnemidophorine species (Glaucomastix abaetensis, Ameivula ocellifera, Glaucomastix littoralis, Contomastix lacertoides and Ameivula nativo) along approximately 5,000 km the Brazilian coast. A total of 550 individuals had their stomach contents removed and identified in the laboratory. Our results showed that the proportion of individuals "running on empty" varied from 0 to 11.1% among the different populations and species. These proportions are suggestive that the five studied species would be in an overall positive energy balance at the time of the study.

Non-Avian Reptiles of the state of Rio de Janeiro, Brazil: status of knowledge and commented list

We assessed the current knowledge on non-avian reptile species composition in the state of Rio de Janeiro (RJ), southeastern Brazil. We used published data in indexed journals and verified voucher specimens housed in two herpetological collections of the Museu Nacional (UFRJ), and the Laboratory of Reptiles (ZUFRJ). We also confirmed vouchers from Instituto Vital Brazil (IVB) and from the Museum of Comparative Zoology (MCZ). We compiled a list containing 149 species of reptiles, distributed among Testudines (N = 15), Crocodylia (N = 1) and Squamata (N = 133; six amphisbaenians, 38 lizards and 89 snakes). Our results add 20 species to the previous list known for the state. Four species recorded are endemic to the state of Rio de Janeiro (Anolis neglectus, Glaucomastix littoralis, Leposternon scutigerum, and Liolaemus lutzae). We identified that 21 reptile species recorded in RJ state (nearly 15% of the total) are included in some threat category either in the IUCN, Brazilian (ICMBio) or state lists of endangered species. We also report that seven of the reptiles recorded are non-indigenous to the state: Cnemidophorus aff. lemniscatus (= Cnemidophorus cryptus), Anolis sagrei, Trachemys scripta, Trachemys dorbigni, Hemidactylus mabouia, Crotalus durissus terrificus, and Rhinoclemmys punctularia. The checklist presented here provides a comprehensive database for further research on the herpetofauna of the Brazilian Atlantic Forest.

Reptiles of the Serra das Torres Natural Monument: using the Rapid Assessment method to fill a knowledge gap in the Atlantic Forest of southeastern Brazil

Abstract: Data on the composition of local reptile assemblages in several Brazilian ecosystems can still be considered relatively restricted in scope in most cases. In this study, we conducted surveys in the Serra das Torres Natural Monument, located in the municipalities of Atílio Vivacqua, Muqui, and Mimoso do Sul, using the Rapid Assessments method (RAP) during 30 days in the rainy season of 2018. We sampled actively for approximately 1320 hours with a 6-10 person crew, supplemented by 720 hours of passive sampling (30 bucket-days) using pitfall traps with drift fences. We recorded 34 reptile species during our sampling method (2 amphisbaenid, 11 lizards, and 21 snakes) and an occasional encounter, after the end of sampling, that added a chelonian species to the list, Hydromedusa maximiliani, totaling 35 reptile species. The Dipsadidae was the family with the greatest snake species richness and, the Gymnophtalmidae had the greatest lizard species richness. The species richness recorded in the Serra das Torres Natural Monument (Ntotal = 35) represents ca. 27% of all reptile species found in the state of Espírito Santo (N = 130). The most abundant lizard species was Leposoma scincoides followed by Ecpleopus gaudichaudii and, the most abundant snake species was Bothrops jararaca being markedly higher than that recorded in similar studies. Twenty-seven percent of the reptile species recorded in our study are endemic to the Atlantic Forest and 30% (N = 10) have been recorded less than five times previously in the Brazilian state of Espírito Santo. Our study reinforces the need for the conservation of the Serra das Torres Natural Monument because of its importance as a reservoir of a considerable portion of the reptile biodiversity of Espírito Santo state, and of the Atlantic Forest biome as a whole.

Occupancy, detectability, and density of crab-eating fox (Cerdocyon thous) in two protected areas of restinga habitats in Brazil

Crab-eating foxes (Cerdocyon thous (Linnaeus, 1766)) are frequently recorded in lists of mammal communities. However, studies quantifying aspects of the ecology of the species are uncommon in the literature. Thus, we aimed to quantify the density, activity, habitat use, and potential threats of C. thous in two protected areas (PAs) in the State of Espírito Santo, Brazil. We used data derived from camera traps and sand plots to model occupancy, detectability, activity; we also used random encounter models (REMs) to model density and abundance. We also estimated the activity of the species. Density of C. thous was 0.82 individuals/km2 with a total abundance of 119 individuals. We concluded that in the PAs studied, C. thous had bimodal, twilight–nocturnal activity patterns and was associated with water sources. Although the species in the area has a relatively high density compared with that from other areas in Brazil, it could be locally threatened by the highway that crosses the two PAs, promoting roadkill events, and by domestic dogs (Canis familiaris Linnaeus, 1758) recorded in these areas. Results presented herein can be a starting point to support future work in the region and to make predictions regarding the management and conservation of C. thous, a widely distributed species.

ATLANTIC EPIPHYTES: a data set of vascular and non-vascular epiphyte plants and lichens from the Atlantic Forest

Epiphytes are hyper-diverse and one of the frequently undervalued life forms in plant surveys and biodiversity inventories. Epiphytes of the Atlantic Forest, one of the most endangered ecosystems in the world, have high endemism and radiated recently in the Pliocene. We aimed to (1) compile an extensive Atlantic Forest data set on vascular, non-vascular plants (including hemiepiphytes), and lichen epiphyte species occurrence and abundance; (2) describe the epiphyte distribution in the Atlantic Forest, in order to indicate future sampling efforts. Our work presents the first epiphyte data set with information on abundance and occurrence of epiphyte phorophyte species. All data compiled here come from three main sources provided by the authors: published sources (comprising peer-reviewed articles, books, and theses), unpublished data, and herbarium data. We compiled a data set composed of 2,095 species, from 89,270 holo/hemiepiphyte records, in the Atlantic Forest of Brazil, Argentina, Paraguay, and Uruguay, recorded from 1824 to early 2018. Most of the records were from qualitative data (occurrence only, 88%), well distributed throughout the Atlantic Forest. For quantitative records, the most common sampling method was individual trees (71%), followed by plot sampling (19%), and transect sampling (10%). Angiosperms (81%) were the most frequently registered group, and Bromeliaceae and Orchidaceae were the families with the greatest number of records (27,272 and 21,945, respectively). Ferns and Lycophytes presented fewer records than Angiosperms, and Polypodiaceae were the most recorded family, and more concentrated in the Southern and Southeastern regions. Data on non-vascular plants and lichens were scarce, with a few disjunct records concentrated in the Northeastern region of the Atlantic Forest. For all non-vascular plant records, Lejeuneaceae, a family of liverworts, was the most recorded family. We hope that our effort to organize scattered epiphyte data help advance the knowledge of epiphyte ecology, as well as our understanding of macroecological and biogeographical patterns in the Atlantic Forest. No copyright restrictions are associated with the data set. Please cite this Ecology Data Paper if the data are used in publication and teaching events.

Good timing: evaluating anuran activity and detectability patterns in the Brazilian Atlantic Forest

Abstract ContextAnimal activity patterns throughout the day constitute an important dimension of their ecological niche, and may have ecological and evolutionary implications; for an organism to be active during the day or night period, a series of conditions requiring different anatomical, physiological and behavioural adaptations must be met. AimsTo study the anuran community in an area of Atlantic Forest in Brazil, to evaluate the species activity period as well as the diurnal and nocturnal detection probabilities of anurans, and to relate these activities to environmental variables such as air temperature, relative humidity and precipitation. MethodsThe anurans were sampled along 21 plot transects in the diurnal period and during a nocturnal period, with temperature and relative humidity measured in each plot. Species were considered predominantly diurnal or nocturnal if 35% or more individuals were recorded during one of these periods. Anuran detectability was estimated using single-season occupancy models, relating to environmental variables. Key resultsOf the individuals recorded, 12% were recorded during diurnal sampling and 88% were recorded during nocturnal sampling, with Ololygon agilis being the only species considered diurnal. The probability of detection was affected by only two variables (period and humidity). ConclusionsThe anuran community in the study area was essentially nocturnal, with only one species that could be considered diurnal. Additionally, detectability was higher at night, with humidity being the most important variable affecting species detection. ImplicationsSurveys can be planned under climatic conditions that positively influence the probabilities of detection to improve the effectiveness of monitoring species and/or anurans community.

Unraveling the influences of climate change in Lepidosauria (Reptilia)

In recent decades, changes in climate have caused impacts on natural and human systems on all continents and across the oceans and many species have shifted their geographic ranges, seasonal activities, migration patterns, abundances and interactions in response to these changes. Projections of future climate change are uncertain, but the Earth's warming is likely to exceed 4.8 °C by the end of 21th century. The vulnerability of a population, species, group or system due to climate change is a function of impact of the changes on the evaluated system (exposure and sensitivity) and adaptive capacity as a response to this impact, and the relationship between these elements will determine the degree of species vulnerability. Predicting the potential future risks to biodiversity caused by climate change has become an extremely active field of research, and several studies in the last two decades had focused on determining possible impacts of climate change on Lepidosaurians, at a global, regional and local level. Here we conducted a systematic review of published studies in order to seek to what extent the accumulated knowledge currently allow us to identify potential trends or patterns regarding climate change effects on lizards, snakes, amphisbaenians and tuatara. We conducted a literature search among online literature databases/catalogues and recorded 255 studies addressing the influence of climate change on a total of 1918 species among 49 Lepidosaurian's families. The first study addressing this subject is dated 1999. Most of the studies focused on species distribution, followed by thermal biology, reproductive biology, behavior and genetics. We concluded that an integrative approach including most of these characteristics and also bioclimatic and environmental variables, may lead to consistent and truly effective strategies for species conservation, aiming to buffer the climate change effects on this group of reptiles.

The Herpetofauna from Ilha Grande (Angra dos Reis, Rio de Janeiro, Brazil): updating species composition, richness, distribution and endemisms

Ilha Grande is a large continental island (total area of 19,300 ha) situated at the southern coast of the state of Rio de Janeiro, in southeast Brazil, within the Atlantic Forest Biome. Here we provide an update to the previous knowledge of the fauna of amphibians and reptiles occurring in Ilha Grande, based on primary data from our own fieldwork and on secondary data (from institutional collections and from the literature). We report the occurrence at Ilha Grande of a total of 74 species, being 34 amphibians (all of them anurans) and 40 reptiles (27 snakes, 11 lizards, one amphisbaenian and one crocodylian). Our survey added 14 species to the herpetofaunal list of Ilha Grande (three of amphibians and eleven of reptiles) and removed one species (the amphibian Cycloramphus fuliginosus) from the previous list. The data indicated that Ilha Grande houses a considerable portion of the Atlantic Forest amphibian and reptile diversity (ca. 6% and 19%, respectively, of the species occurring in this biome) together with high occurrence of species endemic to this biome plus a few amphibian species endemic to this island. Ilha Grande is thus an important reservoir of both biodiversity and endemism of amphibians and reptiles of the Atlantic Forest of Brazil, which highlights the importance of the conservation of the island and of its different habitats along the insular landscape.

Body orientation for thermoregulation and daily activity cycle of Mabuya macrorhyncha (Squamata: Scincidae)

We investigated the daily activity and thermoregulatory body orientation of Mabuya macrorhyncha (Hoge, 1947), a lizard species that occurs in the Brazilian Atlantic Forest. We conducted this investigation in a sandy coastal dune remnant (“restinga” ecosystem) in Grussaí, state of Rio de Janeiro, Brazil, during the summer. The daily activity cycle of the lizards started around 6:00 am and ended before 7:00 pm. This is longer than observed in other populations of M. macrorhyncha (approximately 7:00 am to 5:00 pm). The activity cycle of the lizards was bimodal, with the first peak between 6:00 and 11:00 am and the second from 2:00 to 7:00 pm. This contrasts with observations on other populations of this species, which revealed an unimodal pattern. The mean body temperature of M. macrorhyncha in Grussaí was 34.2 ± 1.5 °C, which was comparatively higher than observed in other populations of the species. The differences in the daily activity and of body temperature of these lizards between our study and previous studies on this species may reflect environmental thermal conditions. The mean air and mean substrate temperatures when individuals were active were 27.8 and 30.5 °C respectively. Lizard orientation was significantly correlated with the direction of the solar incidence, suggesting that solar radiation, and particularly behavioral adjustments that maximize exposure to the sun, are important for the thermoregulation of M. macrorhyncha. Circular structures at the site, such as bromeliads, offer microhabitats with different orientations to the sunlight, favoring lizard thermoregulatory behaviors.

Density, habitat use, and activity patterns of a vulnerable population of the Solitary Tinamou (Tinamus solitarius) in a Brazilian Atlantic Forest fragment

We present the first estimates of density of the Solitary Tinamou (Tinamus solitarius (Vieillot, 1819)) in the Reserva Natural Vale (RNV), one of the two largest remnants of the Atlantic Rainforest in the state of Espírito Santo, Brazil. We also modeled the spatial distribution and habitat use of the species using occupancy and detectability modeling. We used a line-transect survey to estimate density and abundance and camera traps to estimate habitat use and activity pattern. We conducted the survey within a 13 month period (April 2013 to May 2014). Estimated density was 9 ± 2 individuals/km2 and estimated population size for the entire RNV was 2115 ± 470 individuals. Occupancy was best described by distance to forest edge, distance between trees, poaching intensity, and understory cover. Detectability was affected by distance between trees and poaching intensity. We conclude that in the RNV, the Near Threatened T. solitarius is a diurnal species preferring intact closed-canopy forest but tending to avoid areas near to forest edges or areas under comparatively high intensity of poaching. These results reinforce the importance of RNV as a resource source for T. solitarius reproduction at Brazilian Atlantic forest remnants.

The amphibians of the state of Rio de Janeiro, Brazil: an updated and commented list

The amphibian fauna of the state of Rio de Janeiro, in southeatern Brazil, is characterized by high species richness and rates of endemism, and is still insufficiently known. A first list of amphibian species with occurrence in the state was published in 2004 and reported 166 taxa, but since then many new records, descriptions of new taxa, and revalidations and synonymizations of species have consistently improved the knowledge about the state’s amphibian biodiversity. Thus, a review and update of that list was deemed necessary. We herein present an updated and commented list of amphibian species occurring in the state of Rio de Janeiro based on a survey of the literature. We recorded the occurrence of a total of 201 species of amphibians (197 anurans and four caecilians) in Rio de Janeiro, with 54 of them (ca. 27%) considered to be endemic of the state. Our study presents an increase in species richness of 21% since the publication of the previous list, indicating a consistent advance in knowledge of the composition of the amphibian fauna in the state. In spite of its relatively small territorial extension (total area ca. 43,800 km²), the state of Rio de Janeiro contains nearly 20% of the amphibian species known to occur in Brazil and around 40% of those occurring in the Atlantic Forest biome. Thus, that state constitutes an important reservoir of amphibian biodiversity in the Atlantic Forest biome and in Brazil, as a whole.

The rusty-margined guan (Penelope superciliaris) in the Brazilian Atlantic rain forest: density, population size, activity and habitat use

Context Population estimation and monitoring are important tools for the support of programs and actions of conservation for most wildlife species, including birds. For validation of such support, a set of reliable, consistent and comparable parameter estimates is essential (through systematic monitoring over time), in addition to studies on ecological aspects of the species. Aims In this study, our aim was to analyse the population of Penelope superciliaris in the Vale Natural Reserve (VNR), located in north-eastern Espírito Santo, Brazil, providing estimates of density, population size and activity. We also analysed occupancy and detectability of the species, relating them to six covariates (distance from forest edge, water and road, as well as poaching intensity, canopy cover and understorey cover) based on previous knowledge of the ecology of rusty-margined guan. Methods We used line-transect surveys to estimate density and abundance, and camera traps to estimate habitat use by P. superciliaris, using the occupancy modelling approach. Key results Estimated density for P. superciliaris was 2.5 ± 1.0 groups per km2 with a group size of 6.0 ± 2.0 individuals, and estimated population size for the entire VNR was 3544 ± 495 individuals. Occupancy by P. superciliaris was best described by three covariates: (1) distance to road; (2) distance to water; and (3) poaching intensity. Detectability was affected by two covariates: (1) understorey cover; and (2) poaching intensity. Conclusions Our results provide the first information on density, habitat use and activity of P. superciliaris in the VNR. We concluded that P. superciliaris is active diurnally, especially during morning and late afternoon, prefers areas near water sources in denser forests and tends to avoid areas with habitat modification and intense poaching activity. Implications Our data highlight the impact of poaching on the species and can be useful as a baseline for future studies and Cracid conservation plans.

Anuran species of the Salto Morato Nature Reserve in Paraná, southern Brazil: review of the species list

We provide an updated checklist of the anurans of the Salto Morato Nature Reserve (SMNR), Paraná, southern Brazil, including information on species endemism, conservation status, habitat use, and reproductive modes. We sampled the study area between February 2013 and July 2015, using Visual Encounter Surveys, totaling 700 hours of sampling effort. We supplement our primary data with secondary data (published papers and voucher specimens), and through these, we found a total of 54 anuran species representing 23 genera and 10 families. All the frogs recorded are endemic to the Atlantic Forest. Although no species has been listed asEndangered on the Red Lists of Paraná state, Brazil, and the IUCN, five are classified as Data Deficient. Most of the species recorded were arboreal (55.5%), a third were terrestrial (33.3%), and the remainders were rheophilic (11.1%). We identified 18 different reproductive modes, with types 1 (lay eggs in lentic water where the tadpoles develop) and 23 (direct development of terrestrial eggs) being the most common. Our findings indicate that the SMNR currently has the greatest diversity of anuran species and reproductive modes of any area in southern Brazil.

Differential success in sampling of Atlantic Forest amphibians among different periods of the day

In general, anurans tend to be nocturnal, though diurnal activity is characteristic of some groups. Studies show that frog activity may be inferred based on the number of individuals collected at different periods of the day, during large-scale field surveys. We investigated the best period of the day to conduct amphibian sampling in nine Atlantic Rainforest areas in southeastern Brazil, based on intensive field surveys. At each locality we employed similar sampling effort during diurnal, crepuscular and nocturnal searches (totaling 704.5 sampling hours). We pooled data from all localities for each period and estimated the proportion of frogs of each species active at each period based on the total number of individuals and on the number of species found during all surveys for that period. We recorded a total of 817 individual frogs from 69 species. Species richness was highest at night (median = 12 species), intermediate at dusk (median = 8), and lowest during the day (median = 4). The percentage of the total number of individual frogs found (pooled species) was highest during the night (ca. 53%) and lowest during the day (ca. 14%). Analyzing each species separately, the number of individuals recorded was consistently higher at dusk and night for most species. Our study evidences a trend for nocturnal activity for most Atlantic Rainforest frogs, with few species having primarily diurnal habits. Those results may favor future studies and conservation efforts for amphibian species.

Living in a same microhabitat should means eating the same food? Diet and trophic niche of sympatric leaf-litter frogs Ischnocnema henselii and Adenomera marmorata in a forest of Southern Brazil

In this study we analyzed diet composition, niche breadth and overlap of the two leaf-litter frogs Ischnocnema henselii and Adenomera marmorata. Frogs were collected in an Atlantic Rainforest area in the Reserva Natural Salto Morato, in Paraná State, Southern Brazil, using plots of 16 m2 established on forest floor. Ischnocnema henselii consumed 18 different types of prey and the diet of this species was composed predominantly by Hymenoptera (Formicidae) (15.4%), Araneae (13.83%), Orthoptera (6.15%) and Opiliones (6.15%), whereas Adenomera marmorata consumed 15 different types of prey and its diet was composed mainly by Hymenoptera (Formicidae) (45.7%), Acari (31.8%) and Blattodea (14.8%). The niche breadth of I. henselii was BA = 0.43 and that of A. marmorata was BA = 0.19. The diet of the two sympatric species of leaf-litter frogs was basically composed by arthropods and the trophic niche overlap among them did not differ from expected at random. The differences in prey consumption should potentially facilitate the coexistence of two sympatric frogs on the forest floor. Possibly, this difference of prey consumption partly reflects differences in jaw width, species-specific body size of the two species and the period of activity of these two species.

Herpetofauna of the Reserva Ecológica de Guapiaçu (REGUA) and its surrounding areas, in the state of Rio de Janeiro, Brazil

Species inventories are useful tools to improve conservation strategies, especially in highly threatened biomes such as the Brazilian Atlantic Forest. Here we present a species list of amphibians and reptiles for the Reserva Ecológica de Guapiaçu (REGUA), a forest reserve located in the central portion of Rio de Janeiro state, Brazil. The list results from an extensive sampling effort that lasted ten years. A total of 73 amphibian (of which ten are endemic to the state) and 37 reptile species was recorded from the area. Five amphibian species are presently categorized by the IUCN as “data-deficient”, two as “near threatened” and one as “endangered”, whereas one reptile species is categorized as “vulnerable”. Our results showed that REGUA harbors about one-third of the herpetofauna species presently known to occur in state of Rio de Janeiro, adding more information to previously published lists of amphibians and reptiles from localities within the Serra dos =rgãos region, and highlighting the importance of this area for conservation of amphibians and reptiles of the Atlantic Forest.

Diet and helminths of Enyalius brasiliensis (Lacertilia, Iguania, Leiosauridae) in an Atlantic Rainforest remnant in southeastern Brazil

Our study aimed to add information about the diet and endoparasites of Enyalius brasiliensis from an Atlantic Rainforest remnant in the state of Rio de Janeiro, southeastern Brazil. Regarding diet, E. brasiliensis consumed arthropods, with caterpillars and beetles being the most important preys. Regarding helminth parasites, overall prevalence was low (9.5%), with 238 nematodes of the genus Physaloptera found in the stomach of one specimen and one nematode of the genus Rhabdias inside the lung of another. Our results corroborate the observations of previous studies that indicate that lizards of the genus Enyalius tend to feed mainly on relatively large-bodied arthropods and to harbour depauperate endoparasite fauna.

New host records for Amblyomma rotundatum (Acari: Ixodidae) from Grussaí restinga, Rio de Janeiro, Brazil

Amblyomma rotundatum Koch is a parthenogenetic tick usually associated with reptiles and amphibians. However, relatively few studies on occurrences of ticks in wild reptile populations in Brazil have been produced. The aim of this study was to analyze the presence of ticks associated with reptile species in the Grussaí restinga, in the municipality of São João da Barra, state of Rio de Janeiro, Brazil. Between December 2010 and January 2011, 131 individuals belonging to nine species of reptiles of the order Squamata were sampled: the lizards Tropidurus torquatus (n = 51), Hemidactylus mabouia (n = 25), Mabuya agilis (n = 30), Mabuya macrorhyncha (n = 6), Cnemidophorus littoralis (n = 5) and Ameiva ameiva (n = 10); and the snakes Philodryas olfersii (n = 2), Oxyrhopus rhombifer (n = 1) and Micrurus corallinus (n = 1). The only tick species found to be associated with any of the reptiles sampled was A. rotundatum. One adult female was detected on one individual of the lizard A. ameiva, one nymph on one individual of the lizard T. torquatus and four nymphs on one individual of the snake P. olfersii. This study is the first record of parasitism of A. rotundatum involving the reptiles T. torquatus and P. olfersii as hosts. Our results suggest that in the Grussaí restinga habitat, A. rotundatum may use different species of reptiles to complete its life cycle.