Stabilization of Alfvén Eigenmodes in DIII-D via Controlled Energetic Ion Density Ramp and Validation of Theory and Simulations

Fast-ion driven Alfvén waves with frequency close to the ion cyclotron frequency (f=0.58f_{ci}) excited by energetic ions from a neutral beam are stabilized via a controlled energetic ion density ramp for the first time in a fusion research plasma. The scaling of wave amplitude with injection rate is consistent with theory for single mode collisional saturation near marginal stability. The wave is identified as a shear-polarized global Alfvén eigenmode excited by Doppler-shifted cyclotron resonance with fast ions with sub-Alfvénic energetic ions, a first in fusion research plasmas.

Modulation of Core Turbulent Density Fluctuations by Large-Scale Neoclassical Tearing Mode Islands in the DIII-D Tokamak

We report the first observation of localized modulation of turbulent density fluctuations n[over ˜] (via beam emission spectroscopy) by neoclassical tearing modes (NTMs) in the core of the DIII-D tokamak. NTMs are important as they often lead to severe degradation of plasma confinement and disruptions in high-confinement fusion experiments. Magnetic islands associated with NTMs significantly modify the profiles and turbulence drives. In this experiment n[over ˜] was found to be modulated by 14% across the island. Gyrokinetic simulations suggest that n[over ˜] could be dominantly driven by the ion temperature gradient instability.

Observation of an Alfvén Wave Parametric Instability in a Laboratory Plasma

A shear Alfvén wave parametric instability is observed for the first time in the laboratory. When a single finite ω/Ω_{i} kinetic Alfvén wave (KAW) is launched in the Large Plasma Device above a threshold amplitude, three daughter modes are produced. These daughter modes have frequencies and parallel wave numbers that are consistent with copropagating KAW sidebands and a low frequency nonresonant mode. The observed process is parametric in nature, with the frequency of the daughter modes varying as a function of pump wave amplitude. The daughter modes are spatially localized on a gradient of the pump wave magnetic field amplitude in the plane perpendicular to the background field, suggesting that perpendicular nonlinear forces (and therefore k_{⊥} of the pump wave) play an important role in the instability process. Despite this, modulational instability theory with k_{⊥}=0 has several features in common with the observed nonresonant mode and Alfvén wave sidebands.

The upgraded Large Plasma Device, a machine for studying frontier basic plasma physics

In 1991 a manuscript describing an instrument for studying magnetized plasmas was published in this journal. The Large Plasma Device (LAPD) was upgraded in 2001 and has become a national user facility for the study of basic plasma physics. The upgrade as well as diagnostics introduced since then has significantly changed the capabilities of the device. All references to the machine still quote the original RSI paper, which at this time is not appropriate. In this work, the properties of the updated LAPD are presented. The strategy of the machine construction, the available diagnostics, the parameters available for experiments, as well as illustrations of several experiments are presented here.

Linear technique to understand non-normal turbulence applied to a magnetized plasma

In nonlinear dynamical systems with highly nonorthogonal linear eigenvectors, linear nonmodal analysis is more useful than normal mode analysis in predicting turbulent properties. However, the nontrivial time evolution of nonmodal structures makes quantitative understanding and prediction difficult. We present a technique to overcome this difficulty by modeling the effect that the advective nonlinearities have on spatial turbulent structures. The nonlinearities are taken as a periodic randomizing force with time scale consistent with critical balance arguments. We apply this technique to a model of drift wave turbulence in the Large Plasma Device [W. Gekelman et al., Rev. Sci. Instrum. 62, 2875 (1991)], where nonmodal effects dominate the turbulence. We compare the resulting growth rate spectra to the spectra obtained from a nonlinear simulation, showing good qualitative agreement, especially in comparison to the eigenmode growth rate spectra.

Nonlinear excitation of acoustic modes by large-amplitude Alfvén waves in a laboratory plasma

The nonlinear three-wave interaction process at the heart of the parametric decay process is studied by launching counterpropagating Alfvén waves from antennas placed at either end of the Large Plasma Device. A resonance in the beat wave response produced by the two launched Alfvén waves is observed and is identified as a damped ion acoustic mode based on the measured dispersion relation. Other properties of the interaction including the spatial profile of the beat mode and response amplitude are also consistent with theoretical predictions for a three-wave interaction driven by a nonlinear ponderomotive force.

Observation of a critical gradient threshold for electron temperature fluctuations in the DIII-D Tokamak

A critical gradient threshold has been observed for the first time in a systematic, controlled experiment for a locally measured turbulent quantity in the core of a confined high-temperature plasma. In an experiment in the DIII-D tokamak where L(T(e))(-1) = |∇T(e)|/T(e) and toroidal rotation were varied, long wavelength (k(θ)ρ(s) ≲ 0.4) electron temperature fluctuations exhibit a threshold in L(T(e))(-1): below, they change little; above, they steadily increase. The increase in δT(e)/T(e) is concurrent with increased electron heat flux and transport stiffness. Observations were insensitive to rotation. Accumulated evidence strongly enforces the identification of the experimentally observed threshold with ∇T(e)-driven trapped electron mode turbulence.

Toward astrophysical turbulence in the laboratory

Turbulence is a ubiquitous phenomenon in space and astrophysical plasmas, driving a cascade of energy from large to small scales and strongly influencing the plasma heating resulting from the dissipation of the turbulence. Modern theories of plasma turbulence are based on the fundamental concept that the turbulent cascade of energy is caused by the nonlinear interaction between counterpropagating Alfvén waves, yet this interaction has never been observationally or experimentally verified. We present here the first experimental measurement in a laboratory plasma of the nonlinear interaction between counterpropagating Alfvén waves, the fundamental building block of astrophysical plasma turbulence. This measurement establishes a firm basis for the application of theoretical ideas developed in idealized models to turbulence in realistic space and astrophysical plasma systems.

Design of a millimeter-wave polarimeter for NSTX-Upgrade and initial test on DIII-D

Polarimetry is a powerful diagnostic technique to probe plasma equilibria and magnetic fluctuations in fusion plasmas. In a high beta plasma such as the National Spherical Torus eXperiment (NSTX), these measurements are important to understand plasma stability and anomalous transport. A 288 GHz polarimeter operating along a major radial chord in retroreflection geometry has been developed and is being tested on the DIII-D tokamak to prepare for future implementation on NSTX-Upgrade. The system launches a rotating linearly polarized beam and detects the phase shift directly related to the polarization change caused by the plasma. To accomplish this, a pair of orthogonal linearly polarized beams with a stable difference frequency is generated using a single sideband modulation technique, then combined and transformed to be counter-rotating circularly polarized. To improve phase resolution, quasi-optical isolation, using Faraday rotators and polarizers, is utilized to eliminate a multi-path feedback effect, which is found to be the primary source of phase error. The bench tests in the laboratory and DIII-D power supply test discharges indicate ≤1° phase resolution.

2D full wave modeling for a synthetic Doppler backscattering diagnostic

Doppler backscattering (DBS) is a plasma diagnostic used in tokamaks and other magnetic confinement devices to measure the fluctuation level of intermediate wavenumber (k(θ)ρ(s) ~ 1) density fluctuations and the lab frame propagation velocity of turbulence. Here, a synthetic DBS diagnostic is described, which has been used for comparisons between measurements in the DIII-D tokamak and predictions from nonlinear gyrokinetic simulations. To estimate the wavenumber range to which a Gaussian beam would be sensitive, a ray tracing code and a 2D finite difference, time domain full wave code are used. Experimental density profiles and magnetic geometry are used along with the experimental antenna and beam characteristics. An example of the effect of the synthetic diagnostic on the output of a nonlinear gyrokinetic simulation is presented.

Modification of turbulent transport with continuous variation of flow shear in the large plasma device

Continuous control over azimuthal flow and shear in the edge of the Large Plasma Device (LAPD) has been achieved using a biasable limiter which has allowed a careful study of the effect of flow shear on pressure-gradient-driven turbulence and transport in the LAPD. The LAPD rotates spontaneously in the ion diamagnetic direction; positive limiter bias first reduces, then minimizes (producing a near-zero shear state), and finally reverses the flow into the electron diamagnetic direction. Degradation of particle confinement is observed in the minimum shearing state and a reduction in the turbulent particle flux is observed with increasing shearing in both flow directions. Near-complete suppression of the turbulent particle flux is observed for shearing rates comparable to the turbulent autocorrelation rate measured in the minimum shear state. Turbulent flux suppression is dominated by amplitude reduction in low-frequency (<10 kHz) density fluctuations. An increase in fluctuations for the highest shearing states is observed with the emergence of a coherent mode which does not lead to net particle transport. The variations of density fluctuations are fit well with power laws and compare favorably to simple models of shear suppression of transport.

Role of nonlinear coupling and density fluctuations in magnetic-fluctuation-induced particle transport

Three-wave nonlinear coupling among spatial Fourier modes of density and magnetic fluctuations is directly measured in a magnetically confined toroidal plasma. Density fluctuations are observed to gain (lose) energy from (to) either equilibrium or fluctuating fields depending on the mode number. Experiments indicate that nonlinear interactions alter the phase relation between density and magnetic fluctuations, leading to strong particle transport.

New plasma measurements with a multichannel millimeter-wave fluctuation diagnostic system in the DIII-D tokamak (invited)

A novel multichannel, tunable Doppler backscattering (DBS)/reflectometry system has recently been developed and applied to a variety of DIII-D plasmas. Either DBS or reflectometry can be easily configured for use in a wide range of plasma conditions using a flexible quasi-optical antenna system. The multiple closely spaced channels, when combined with other fluctuation diagnostic systems, have opened up new measurements of plasma properties. For example, the toroidal and fine-scale radial structure of coherent plasma oscillations, such as geodesic acoustic modes, have been probed simultaneously in the core of high temperature plasmas by applying correlation analysis between two toroidally separated DBS systems, as well as within the multichannel array. When configured as a reflectometer, cross-correlation with electron cyclotron emission radiometry has uncovered detailed information regarding the crossphase relationship between density and temperature fluctuations. The density-temperature crossphase measurement yields insight into the physics of tokamak turbulence at a fundamental level that can be directly compared with predictions from nonlinear gyrokinetic simulations.

Interaction between Faraday rotation and Cotton-Mouton effects in polarimetry modeling for NSTX

The evolution of electromagnetic wave polarization is modeled for propagation in the major radial direction in the National Spherical Torus Experiment with retroreflection from the center stack of the vacuum vessel. This modeling illustrates that the Cotton-Mouton effect-elliptization due to the magnetic field perpendicular to the propagation direction-is shown to be strongly weighted to the high-field region of the plasma. An interaction between the Faraday rotation and Cotton-Mouton effects is also clearly identified. Elliptization occurs when the wave polarization direction is neither parallel nor perpendicular to the local transverse magnetic field. Since Faraday rotation modifies the polarization direction during propagation, it must also affect the resultant elliptization. The Cotton-Mouton effect also intrinsically results in rotation of the polarization direction, but this effect is less significant in the plasma conditions modeled. The interaction increases at longer wavelength and complicates interpretation of polarimetry measurements.

Control of gradient-driven instabilities using shear Alfvén beat waves

A new technique for manipulation and control of gradient-driven instabilities through nonlinear interaction with Alfvén waves in a laboratory plasma is presented. A narrow, field-aligned density depletion is created in the Large Plasma Device, resulting in coherent, unstable fluctuations on the periphery of the depletion. Two independent shear Alfvén waves are launched along the depletion at separate frequencies, creating a nonlinear beat-wave response at or near the frequency of the original instability. When the beat wave has sufficient amplitude, the original unstable mode is suppressed, leaving only the beat-wave response, generally at lower amplitude.

A multichannel, frequency-modulated, tunable Doppler backscattering and reflectometry system

A novel multichannel Doppler backscattering system has been designed and tested for application on the DIII-D [J. L. Luxon, Fusion Sci. Technol. 48, 828 (2005)] and National Spherical Torus Experiment (NSTX) [M. Ono et al., Nucl. Fusion 40, 557 (2000)] fusion plasma devices. Doppler backscattering measures localized intermediate wavenumber (k(perpendicular)rho(i) approximately 1-4,k(perpendicular) approximately 2-15 cm(-1)) density fluctuations and the propagation velocity of turbulent structures. Microwave radiation is launched at a frequency that approaches a cutoff layer in the plasma and at an angle that is oblique to the cutoff layer. Bragg backscattering occurs near the cutoff layer for fluctuations with k(perpendicular) approximately -2k(i), where k(i) is the incident probe wave vector at the scattering location. The turbulence propagation velocity can be determined from the Doppler shift in the return signal together with knowledge of the scattering wavenumber. Ray tracing simulations are used to determine k(perpendicular) and the scattering location. Frequency modulation of a voltage-controlled solid state microwave source followed by frequency multiplication is used to create an array of finely spaced (Delta f=350 MHz) frequencies spanning 1.4 GHz. The center of the array bandwidth is tunable within the range of approximately 53-78 GHz. This article details the system design, laboratory tests, and presents initial data from DIII-D plasmas.

Simultaneous density and magnetic field fluctuation measurements by far-infrared interferometry and polarimetry in MST

Fluctuations are expected to play an important role in anomalous particle, momentum, and energy transport for magnetic confinement devices. Magnetic and density fluctuations are simultaneously measured using a high-speed laser-based Faraday rotation-interferometry system with a bandwidth of 500 kHz and 8 cm chord spacing. Density fluctuation and magnetic fluctuation profiles are obtained by using a newly developed fitting procedure.

A correlation electron cyclotron emission diagnostic and the importance of multifield fluctuation measurements for testing nonlinear gyrokinetic turbulence simulations

A correlation electron cyclotron emission (CECE) diagnostic has been used to measure local, turbulent fluctuations of the electron temperature in the core of DIII-D plasmas. This paper describes the hardware and testing of the CECE diagnostic and highlights the importance of measurements of multifield fluctuation profiles for the testing and validation of nonlinear gyrokinetic codes. The process of testing and validating such codes is critical for extrapolation to next-step fusion devices. For the first time, the radial profiles of electron temperature and density fluctuations are compared to nonlinear gyrokinetic simulations. The CECE diagnostic at DIII-D uses correlation radiometry to measure the rms amplitude and spectrum of the electron temperature fluctuations. Gaussian optics are used to produce a poloidal spot size with w(o) approximately 1.75 cm in the plasma. The intermediate frequency filters and the natural linewidth of the EC emission determine the radial resolution of the CECE diagnostic, which can be less than 1 cm. Wavenumbers resolved by the CECE diagnostic are k(theta) < or = 1.8 cm(-1) and k(r) < or = 4 cm(-1), relevant for studies of long-wavelength turbulence associated with the trapped electron mode and the ion temperature gradient mode. In neutral beam heated L-mode plasmas, core electron temperature fluctuations in the region 0.5 < r/a < 0.9, increase with radius from approximately 0.5% to approximately 2%, similar to density fluctuations that are measured simultaneously with beam emission spectroscopy. After incorporating "synthetic diagnostics" to effectively filter the code output, the simulations reproduce the characteristics of the turbulence and transport at one radial location r/a = 0.5, but not at a second location, r/a = 0.75. These results illustrate that measurements of the profiles of multiple fluctuating fields can provide a significant constraint on the turbulence models employed by the code.

Detection of zonal flow spectra in DIII-D by a dual-channel Doppler backscattering system

Doppler backscattering (DBS) has been successfully used to measure the E x B flow velocity and local intermediate wavenumber density fluctuation levels in the DIII-D tokamak. Depending on the launch angle and the frequency of the probing beam, the signal backscattered from the plasma cut-off layer is sensitive to density fluctuations at a specific perpendicular wavenumber (1 < or = k(perpendicular rho(s)) < or = 4). Due to the localization and high time resolution for poloidal flow measurements, DBS is well suited to detect stationary and time-dependent shear flows [zonal flows (ZFs)]. We present a novel scheme to measure ZF spectra using a dual-channel DBS system capable of simultaneously probing two minor radii separated by a distance of 0.2 cm < Delta r < 3 cm. Frequency spectra of geodesic acoustic modes and low frequency ZFs (f or = 10 kHz) have been obtained for 0.6 < r/a < 0.95.

Exponential frequency spectrum in magnetized plasmas

Measurements of a magnetized plasma with a controlled electron temperature gradient show the development of a broadband spectrum of density and temperature fluctuations having an exponential frequency dependence at frequencies below the ion cyclotron frequency. The origin of the exponential frequency behavior is traced to temporal pulses of Lorentzian shape. Similar exponential frequency spectra are also found in limiter-edge plasma turbulence associated with blob transport. This finding suggests a universal feature of magnetized plasma turbulence leading to nondiffusive, cross-field transport, namely, the presence of Lorentzian shaped pulses.

Spontaneous thermal waves in a magnetized plasma

Coherent temperature oscillations corresponding to thermal (diffusion) waves are observed to be spontaneously excited in a narrow temperature filament embedded in a large, but colder, magnetized plasma. The parallel and transverse propagation properties of the waves satisfy the predictions of the classical transport theory based on Coulomb collisions. The frequency of the oscillations meets the conditions for a quarter-wave thermal resonator. This is the plasma version of thermal resonators used in the study of other states of matter.

Observation of reduced electron-temperature fluctuations in the core of H-mode plasmas

Core electron-temperature fluctuations [0.5%< or =T[over ]_(e)/T_(e)< or =2%, k_(theta)rho_(s)< or =0.3 in neutral-beam-heated low confinement-mode (L-mode) plasmas] are observed to decrease by at least a factor of 4 in standard and quiescent high-confinement-mode (H-mode and QH-mode) regimes in the DIII-D tokamak (r/a=0.7). These fluctuations are attributed to ion temperature gradient (ITG) modes stabilized by rotational shear at the H-mode transition. The simultaneous reduction in electron heat diffusivity (chi_(e)(QH)/chi_(e)(L)<0.25) suggests that T[over ]_(e) fluctuations can contribute significantly to L-mode electron heat transport.

Laboratory observation of a nonlinear interaction between shear Alfvén waves

An experimental investigation of nonlinear interactions between shear Alfvén waves in a laboratory plasma is presented. Two Alfvén waves, generated by a resonant cavity, are observed to beat together, driving a pseudomode at the beat frequency. The pseudomode then scatters the Alfvén waves, generating a series of sidebands. The observed interaction is very strong, with the normalized amplitude of the driven pseudomode comparable to the normalized magnetic field amplitude (deltaB/B) of the interacting Alfvén waves.

Use of a litter material made from cotton waste, gypsum, and old newsprint for rearing broiler chickens

Three experiments, which included 4 broiler flocks, were conducted to examine the usefulness of a novel bedding material for rearing broilers. The control bedding was pine shavings. The novel bedding, aGroChips (AC), was a chopped material made from cotton lint waste, gypsum, and old newsprint using a proprietary paper manufacturing process (Novovita, Inc., Raleigh, NC). All birds were fed the same feeding program: starter from 0 to 3 wk, grower from 3 to 5 or 6 wk, and finisher during the last week. Birds were marketed at either 6 or 7 wk of age. Feed consumption by pen and individual bird BW were measured at 3 and 6 or 7 wk. Mean BW and feed conversion, adjusted to include weight of mortality, were calculated. A sample of birds (n = 10) from each pen was evaluated for hock and foot pad condition. Each pen was evaluated at the end of the trial for litter cake index in 3 of the 4 flocks. Litter cake index scores were generally higher for birds reared on AC litters. There were no other differences in bird performance for any of the flocks. In conclusion, broilers reared on AC bedding perform as well as those reared on pine shavings.

From disease genes to cellular pathways: a progress report

Mutations in a large number of retinal and retinal pigment epithelium (RPE) expressed genes can lead to the degeneration of photoreceptors and consequently the loss of vision. The genetic and phenotypic heterogeneity of retinal dystrophies poses a complex problem with respect to rational development of therapeutic strategies. Delineation of physiological functions of disease genes and identification of pathways that lead to disease pathogenesis represent essential goals towards developing a systematic and global approach to gene-based treatments. We are interested in identifying cellular pathways that are involved in photoreceptor differentiation, function and degeneration. We are, therefore, generating comprehensive gene expression profiles of retina and RPE of humans and mice using both cDNA- and oligonucleotide-based (Affymetrix) microarrays. Because of the under-representation of retinal/RPE genes in the public databases, we have constructed several unamplified cDNA libraries and produced almost twenty thousand expressed sequence tags (ESTs) that are being printed onto glass slides ('I-Gene' microarrays). In this presentation, we will report the microarray analysis of the rodless (and cone-enhanced) retina from the Nrl-knockout mouse as a paradigm to initiate the identification of cellular pathways involved in photoreceptor differentiation and function.

Measurement of lower-hybrid drift turbulence in a reconnecting current sheet

We present a detailed study of fluctuations in a laboratory current sheet undergoing magnetic reconnection. The measurements reveal the presence of lower-hybrid-frequency-range fluctuations on the edge of current sheets produced in the magnetic reconnection experiment (MRX). The measured fluctuation characteristics are consistent with theoretical predictions for the lower-hybrid drift instability (LHDI). Our observations suggest that the LHDI turbulence alone cannot explain the observed fast reconnection rate in MRX.

Chipping away at complex behavior: transcriptome/phenotype correlations in the mouse brain

Highly parallel gene expression profiling has the potential to provide new insight into the molecular mechanisms of complex brain diseases and behavioral traits. We review how gene expression profiling in various brain regions of inbred mouse strains has been used to identify genes that may contribute to strain-specific phenotypes. New data, which demonstrate the use of gene expression profiling in combination with behavioral testing to identify candidate genes involved in mediating variation in running wheel activity, are also presented. These and other studies suggest that a combination of gene expression profiling and more traditional genetic approaches, such as quantitative trait locus analysis, can be used to identify genes responsible for specific neurobehavioral phenotypes.

Ataxia telangiectasia mutated is essential during adult neurogenesis

Ataxia telangiectasia (A-T) is an autosomal recessive disease characterized by normal brain development followed by progressive neurodegeneration. The gene mutated in A-T (ATM) is a serine protein kinase implicated in cell cycle regulation and DNA repair. The role of ATM in the brain and the consequences of its loss on neuronal survival remain unclear. We studied the role of ATM in adult neural progenitor cells in vivo and in vitro to define the role of ATM in dividing and postmitotic neural cells from Atm-deficient (Atm(-/-)) mice in a physiologic context. We demonstrate that ATM is an abundant protein in dividing neural progenitor cells but is markedly down-regulated as cells differentiate. In the absence of ATM, neural progenitor cells of the dentate gyrus show abnormally high rates of proliferation and genomic instability. Atm(-/-) cells in vivo, and in cell culture, show a blunted response to environmental stimuli that promote neural progenitor cell proliferation, survival, and differentiation along a neuronal lineage. This study defines a role for ATM during the process of neurogenesis, demonstrates that ATM is required for normal cell fate determination and neuronal survival both in vitro and in vivo, and points to a mechanism for neuronal cell loss in progressive neurodegenerative diseases.

Mice with a targeted mutation in the thyroid hormone beta receptor gene exhibit impaired growth and resistance to thyroid hormone

Patients with mutations in the thyroid hormone receptor beta (TRbeta) gene manifest resistance to thyroid hormone (RTH), resulting in a constellation of variable phenotypic abnormalities. To understand the molecular basis underlying the action of mutant TRbeta in vivo, we generated mice with a targeted mutation in the TRbeta gene (TRbetaPV; PV, mutant thyroid hormone receptor kindred PV) by using homologous recombination and the Cre/loxP system. Mice expressing a single PV allele showed the typical abnormalities of thyroid function found in heterozygous humans with RTH. Homozygous PV mice exhibit severe dysfunction of the pituitary-thyroid axis, impaired weight gains, and abnormal bone development. This phenotype is distinct from that seen in mice with a null mutation in the TRbeta gene. Importantly, we identified abnormal expression patterns of several genes in tissues of TRbetaPV mice, demonstrating the interference of the mutant TR with the gene regulatory functions of the wild-type TR in vivo. These results show that the actions of mutant and wild-type TRbeta in vivo are distinct. This model allows further study of the molecular action of mutant TR in vivo, which could lead to better treatment for RTH patients.

Regional and strain-specific gene expression mapping in the adult mouse brain

To determine the genetic causes and molecular mechanisms responsible for neurobehavioral differences in mice, we used highly parallel gene expression profiling to detect genes that are differentially expressed between the 129SvEv and C57BL/6 mouse strains at baseline and in response to seizure. In addition, we identified genes that are differentially expressed in specific brain regions. We found that approximately 1% of expressed genes are differentially expressed between strains in at least one region of the brain and that the gene expression response to seizure is significantly different between the two inbred strains. The results lead to the identification of differences in gene expression that may account for distinct phenotypes in inbred strains and the unique functions of specific brain regions.

Local measurement of nonclassical ion heating during magnetic reconnection

Local ion temperature and flows are measured directly in the well-characterized reconnection layer of a laboratory plasma. The measurements indicate strongly that ions are heated due to reconnection and that more than half of the reconnected field energy is converted to ion thermal energy. Neither classical viscous damping of the observed sub-Alfvenic ion flows nor classical energy exchange with electrons is sufficient to account for the ion heating, suggesting the importance of nonclassical dissipation mechanisms in the reconnection layer.

Extensive DNA deletion associated with severe disease alleles on spinal muscular atrophy homologues

Spinal muscular atrophy (SMA) is a motor neuron disease presenting with a wide spectrum of phenotypic variations. The primary cause of most, if not all, forms of childhood-onset spinal muscular atrophy appears to be the homozygous loss of the telomeric copy of the survival motor neuron (SMNT) gene. It is interesting that approximately half of all affected patients are likewise homozygous nulls for the neuronal apoptosis inhibitory protein (NAIP) gene and a somewhat lesser fraction for the basal transcription factor, p44 subunit (BTF2p44) gene. It has been proposed that homozygous loss of SMNT is the primary cause of spinal muscular atrophy while the loss of NAIP and perhaps other genes primarily affects the severity of disease manifestation. We explored this hypothesis by evaluating the extent of gene deletions in three multigenerational families with spinal muscular atrophy exhibiting dramatic intrafamilial phenotypic variation. Using somatic cell hybrid lines to sequester individual spinal muscular atrophy homologues, we show that homologues missing several contiguous genes correlate with "severe" disease alleles and homologues missing only SMNT correlate with "mild" disease alleles. These observations support the hypothesis that phenotypic severity among the childhood-onset spinal muscular atrophies is directly correlated with the extent of disease-specific deletions.

A multicopy transcription-repair gene, BTF2p44, maps to the SMA region and demonstrates SMA associated deletions

The childhood-onset spinal muscular atrophies are a clinically heterogeneous group of autosomal recessive disorders characterized by selective degeneration of the anterior horn cells with subsequent weakness and atrophy of limb muscles. The disease locus has been mapped to a region of chromosome 5q13 characterized by genetic instability and DNA duplication. Among the duplicated genes in this region, SMNT (telomeric copy; survival motor neuron) is thought to be the major disease determining gene since it is missing in the majority of SMA patients and since small, intragenic mutations in the gene have been associated with the disorder. Approximately half of the severely affected SMA I patients are also missing both homologues of a neighboring gene, the neuronal apoptosis inhibitory protein (NAIP). These data indicate that loss of NAIP may affect disease severity and further, that the molecular events underlying the childhood-onset SMAs are complex, possibly involving multiple genes. We report a third multicopy gene in the SMA region, encoding the p44 subunit of basal transcription factor II (BTF2p44). One copy of this transcription-repair gene is deleted in at least 15% of all SMA cases.

Characterization of survival motor neuron (SMNT) gene deletions in asymptomatic carriers of spinal muscular atrophy

Previous reports have established that the telomeric copy of the survival motor neuron (SMNT) gene and the intact copy of the neuronal apoptosis inhibitory protein (NAIP) gene are preferentially deleted in patients with spinal muscular atrophy (SMA). Although deletions or mutations in the SMNT gene are most highly correlated with SMA, it is not clear to what extent NAIP or other genes influence the SMA phenotype, or whether a small fraction of SMA patients actually have functional copies of both SMNT and NAIP. To evaluate further the part of SMNT in the development of SMA, we analyzed 280 asymptomatic SMA family members for the presence or absence of SMNT exons 7 and 8. We report the following observations: (i) 4% of the sample harbored a polymorphic variant of SMNT exon 7 that looks like a homozygous deletion; (ii) approximately 1% of the parents are homozygously deleted for both exons 7 and 8; (iii) one asymptomatic parent lacking both copies of SMNT exons 7 and 8 displays a 'subclinical phenotype' characterized by mild neurogenic pathology; (iv) another asymptomatic parent lacking both SMNT exons showed no signs of motor neuron disorder by clinical and neurodiagnostic analyses. The demonstration of polymorphic variants of exon 7 that masquerade as homozygous nulls, and the identification of SMA parents who harbor two disease alleles, serve as a caution to those conducting prenatal tests with these markers.

Refinement of the spinal muscular atrophy locus by genetic and physical mapping

We report the mapping and characterization of 12 microsatellite markers including 11 novel markers. All markers were generated from overlapping YAC clones that span the spinal muscular atrophy (SMA) locus. PCR amplification of 32 overlapping YAC clones shows that 9 of the new markers (those set in italics) map to the interval between the two previous closest flanking markers (D5S629 and D5S557): cen-D5S6-D5S125-D5S435-D5S1407- D5S629-D5S1410-D5S1411/D5S1412-D5S1413- D5S1414-D5Z8-D5Z9-CATT1-D5Z10/D5Z6- D5S557-D5S1408-D5S1409-D5S637-D5S351-MA P1B-tel. Four of these new markers detect multiple loci in and out of the SMA gene region. Genetic analysis of recombinant SMA families indicates that D5S1413 is a new proximal flanking locus for the SMA gene. Interestingly, among the 40 physically mapped loci, the 14 multilocus markers map contiguously to a genomic region that overlaps, and perhaps helps define, the minimum genetic region encompassing the SMA gene(s).

Relationship of dietary calcium level during the prelay phase of an induced molt to postmolt performance

Leghorn laying hens were induced to molt by a combination of photoperiod reduction and fasting for 14 days, during which time the hens lost 31.5% of their initial body weight. The hens were then assigned to one of four diets containing 1.0, 1.75, 2.5, or 3.5% calcium until egg production resumed. The 3.5% calcium diet was fed to all treatments from the resumption of 5% egg production. Postmolt egg production and feed conversion were not affected significantly. Egg weight, shell weight, and egg specific gravity were not affected consistently. It was concluded that high dietary calcium levels immediately postfast have no adverse effect on postmolt performance.

Effect of the insect growth regulator CGA-72662 (Larvadex) on broiler breeder production, hatchability, and subsequent chick performance

Broiler breeders were fed CGA -72662 ( Larvadex ) at dosages of 0, 30, 300, and 3000 mg/kg (ppm) diet in a standard breeder diet from 25 to 65 weeks of age. The 3000 ppm level was reduced stepwise to 1000 ppm from 25 to 27 weeks due to a significant increase in male and female mortality. Feed consumption did not differ significantly due to treatment. However, birds fed 300 ppm exhibited significantly improved feed conversion and increased egg production on a hen-day basis compared to those fed 0 and 30 ppm with the 1000 ppm level intermediate. On an egg per hen-housed basis, birds fed 300 ppm produced significantly more eggs than those fed 0 ppm with 30 ppm intermediate. Hens fed 1000 ppm produced significantly fewer eggs than all other treatments due to higher initial mortality. Body weight gains for males and females among treatments were similar. Mortality was significantly greater at 1000 ppm than for all other treatments. Egg specific gravity at 50 and 60 weeks was not affected significantly by any treatment. Egg weight, when compared to the 0 ppm level, was decreased significantly at the 1000 ppm level at 50 weeks and by both 300 and 1000 ppm levels at 60 weeks. Egg shell weight was not affected significantly at 50 weeks, but was decreased significantly by both 300 and 1000 ppm Larvadex at 60 weeks. There were no significant effects due to treatment level on fertility, early deads , pipped eggs, hatchability of fertile eggs, or hatchability of eggs set.(ABSTRACT TRUNCATED AT 250 WORDS)

Pituitary gigantism in a 31 month old girl: endocrine studies and successful response to hypophysectomy

A case of pituitary gigantism occurring in a 31 month old female child is reported. Growth records indicate that the disorder began early in the second yr of life. Apart from her size and history of excessive sweating, there were no characteristic clinical features of endocrinopathy. Elevated and autonomous secretion of GH (60-109 microgram/l) and prolactin were corrected by the removal of an eosinophilic pituitary adenoma. In the subsequent 6 yr, despite the presence of immunoreactive GH (4.6-17.3 microgram/l), plasma somatomedin was subnormal and the patient showed growth failure which responded normally to exogenous GH therapy. This case, which appears to be the youngest example of verified pituitary gigantism on record, illustrates that a successful outcome can be achieved by surgical ablative therapy.

The Distal Communication of the Blood-Vessels with the Lymphatics; and on a Diaplasmatic System of Vessels

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