1
|
Fakhimi N, Torres MJ, Fernández E, Galván A, Dubini A, González-Ballester D. Chlamydomonas reinhardtii and Microbacterium forte sp. nov., a mutualistic association that favors sustainable hydrogen production. Sci Total Environ 2024; 913:169559. [PMID: 38159768 DOI: 10.1016/j.scitotenv.2023.169559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 11/30/2023] [Accepted: 12/19/2023] [Indexed: 01/03/2024]
Abstract
A naturally occurring multispecies bacterial community composed of Bacillus cereus and two novel bacteria (Microbacterium forte sp. nov. and Stenotrophomonas goyi sp. nov.) has been identified from a contaminated culture of the microalga Chlamydomonas reinhardtii. When incubated in mannitol- and yeast extract-containing medium, this bacterial community can promote and sustain algal hydrogen production up to 313 mL H2·L-1 for 17 days and 163.5 mL H2·L-1 for 25 days in high-cell (76.7 μg·mL-1 of initial chlorophyll) and low-cell density (10 μg·mL-1 of initial chlorophyll) algal cultures, respectively. In low-cell density algal cultures, hydrogen production was compatible with algal growth (reaching up to 60 μg·mL-1 of chlorophyll). Among the bacterial community, M. forte sp. nov. was the sole responsible for the improvement in hydrogen production. However, algal growth was not observed in the Chlamydomonas-M. forte sp. nov. consortium during hydrogen-producing conditions (hypoxia), suggesting that the presence of B. cereus and S. goyi sp. nov. could be crucial to support the algal growth during hypoxia. Still, under non‑hydrogen producing conditions (aerobiosis) the Chlamydomonas-M. forte sp. nov. consortium allowed algal growth (up to 40 μg·mL-1 of chlorophyll) and long-term algal viability (>45 days). The genome sequence and growth tests of M. forte sp. nov. have revealed that this bacterium is auxotroph for biotin and thiamine and unable to use sulfate as sulfur source; it requires S-reduced forms such as cysteine and methionine. Cocultures of Chlamydomonas reinhardtii and M. forte sp. nov. established a mutualistic association: the alga complemented the nutrient deficiencies of the bacterium, while the bacterium released ammonium (0.19 mM·day-1) and acetic acid (0.15 mM·day-1) for the alga. This work offers a promising avenue for photohydrogen production concomitant with algal biomass generation using nutrients not suitable for mixotrophic algal growth.
Collapse
Affiliation(s)
- Neda Fakhimi
- Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales, Universidad de Córdoba, Córdoba 14071, Spain; Department of Biosphere Sciences and Engineering, Carnegie Institution for Science, Stanford, CA, 94305, United States of America.
| | - María Jesus Torres
- Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales, Universidad de Córdoba, Córdoba 14071, Spain.
| | - Emilio Fernández
- Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales, Universidad de Córdoba, Córdoba 14071, Spain.
| | - Aurora Galván
- Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales, Universidad de Córdoba, Córdoba 14071, Spain.
| | - Alexandra Dubini
- Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales, Universidad de Córdoba, Córdoba 14071, Spain.
| | - David González-Ballester
- Departamento de Bioquímica y Biología Molecular, Campus Universitario de Rabanales, Universidad de Córdoba, Córdoba 14071, Spain.
| |
Collapse
|
2
|
Zhang N, Venn B, Bailey CE, Xia M, Mattoon EM, Mühlhaus T, Zhang R. Moderate high temperature is beneficial or detrimental depending on carbon availability in the green alga Chlamydomonas reinhardtii. J Exp Bot 2024; 75:979-1003. [PMID: 37877811 DOI: 10.1093/jxb/erad405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Accepted: 10/21/2023] [Indexed: 10/26/2023]
Abstract
High temperatures impair plant growth and reduce agricultural yields, but the underlying mechanisms remain elusive. The unicellular green alga Chlamydomonas reinhardtii is an excellent model to study heat responses in photosynthetic cells due to its fast growth rate, many similarities in cellular processes to land plants, simple and sequenced genome, and ample genetic and genomics resources. Chlamydomonas grows in light by photosynthesis and with externally supplied acetate as an organic carbon source. Understanding how organic carbon sources affect heat responses is important for the algal industry but remains understudied. We cultivated wild-type Chlamydomonas under highly controlled conditions in photobioreactors at 25 °C (control), 35 °C (moderate high temperature), or 40 °C (acute high temperature) with or without constant acetate supply for 1 or 4 day. Treatment at 35 °C increased algal growth with constant acetate supply but reduced algal growth without sufficient acetate. The overlooked and dynamic effects of 35 °C could be explained by induced acetate uptake and metabolism. Heat treatment at 40 °C for more than 2 day was lethal to algal cultures with or without constant acetate supply. Our findings provide insights to understand algal heat responses and help improve thermotolerance in photosynthetic cells.
Collapse
Affiliation(s)
- Ningning Zhang
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
| | - Benedikt Venn
- Computational Systems Biology, RPTU Kaiserslautern, 67663 Kaiserslautern, Germany
| | | | - Ming Xia
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
| | - Erin M Mattoon
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
- Plant and Microbial Biosciences Program, Division of Biology and Biomedical Sciences, Washington University in Saint Louis, St. Louis, MO 63130, USA
| | - Timo Mühlhaus
- Computational Systems Biology, RPTU Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Ru Zhang
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
| |
Collapse
|
3
|
Poulhazan A, Arnold AA, Mentink-Vigier F, Muszyński A, Azadi P, Halim A, Vakhrushev SY, Joshi HJ, Wang T, Warschawski DE, Marcotte I. Molecular-level architecture of Chlamydomonas reinhardtii's glycoprotein-rich cell wall. Nat Commun 2024; 15:986. [PMID: 38307857 PMCID: PMC10837150 DOI: 10.1038/s41467-024-45246-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 01/19/2024] [Indexed: 02/04/2024] Open
Abstract
Microalgae are a renewable and promising biomass for large-scale biofuel, food and nutrient production. However, their efficient exploitation depends on our knowledge of the cell wall composition and organization as it can limit access to high-value molecules. Here we provide an atomic-level model of the non-crystalline and water-insoluble glycoprotein-rich cell wall of Chlamydomonas reinhardtii. Using in situ solid-state and sensitivity-enhanced nuclear magnetic resonance, we reveal unprecedented details on the protein and carbohydrate composition and their nanoscale heterogeneity, as well as the presence of spatially segregated protein- and glycan-rich regions with different dynamics and hydration levels. We show that mannose-rich lower-molecular-weight proteins likely contribute to the cell wall cohesion by binding to high-molecular weight protein components, and that water provides plasticity to the cell-wall architecture. The structural insight exemplifies strategies used by nature to form cell walls devoid of cellulose or other glycan polymers.
Collapse
Affiliation(s)
- Alexandre Poulhazan
- Department of Chemistry, Université du Québec à Montréal, Montreal, QC, H2X 2J6, Canada
| | - Alexandre A Arnold
- Department of Chemistry, Université du Québec à Montréal, Montreal, QC, H2X 2J6, Canada
| | - Frederic Mentink-Vigier
- National High Magnetic Field Laboratory, Florida State University, Tallahassee, FL, 32310, USA
| | - Artur Muszyński
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
| | - Parastoo Azadi
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602, USA
| | - Adnan Halim
- Copenhagen Center for Glycomics, University of Copenhagen, Copenhagen, Denmark
| | - Sergey Y Vakhrushev
- Copenhagen Center for Glycomics, University of Copenhagen, Copenhagen, Denmark
| | | | - Tuo Wang
- Department of Chemistry, Michigan State University, East Lansing, MI, 48824, USA.
| | - Dror E Warschawski
- Laboratoire des Biomolécules, LBM, CNRS UMR 7203, Sorbonne Université, École Normale Supérieure, PSL University, 75005, Paris, France.
| | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, Montreal, QC, H2X 2J6, Canada.
| |
Collapse
|
4
|
Guleria S, Simsek H, Chawla P, Relhan A, Bhasin A. Evaluation of Cladophora and Chlamydomonas microalgae for environmental sustainability: A comparative study of antimicrobial and photocatalytic dye degradation. Environ Pollut 2024; 340:122806. [PMID: 37926410 DOI: 10.1016/j.envpol.2023.122806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Revised: 10/21/2023] [Accepted: 10/24/2023] [Indexed: 11/07/2023]
Abstract
The present study emphasizes exploring the potential of bioactive compounds such as polysaccharides, protein, pigments, antioxidants, and vitamins extracted from two microalgae species, Cladophora and Chlamydomonas. The extraction process was optimized for different periods, and the extracted bioactive compounds were characterized. These bioactive compounds showed significant antibacterial activity against gram-positive and gram-negative bacteria. Notably, Cladophora species exhibited a higher zone of inhibition than Chlamydomonas species against both gram-positive and gram-negative bacterial strains. Moreover, the photocatalytic activity of these bioactive compounds was investigated for the degradation of methylene blue and crystal violet dyes under different light conditions. The results demonstrated that Cladophora species exhibited superior photocatalytic activity under natural sunlight, UV light, and visible light sources compared to Chlamydomonas species. Moreover, Cladophora species achieved the highest dye degradation efficiencies of 78% and 72% for methylene blue and crystal violet, respectively, within 150 min compared to UV light and visible light sources.
Collapse
Affiliation(s)
- Samriti Guleria
- Department of Food Technology & Nutrition, Lovely Professional University, 144411, Phagwara, India.
| | - Halis Simsek
- Department of Agricultural & Biological Engineering, Purdue University, West Lafayette, IN, 47907, USA.
| | - Prince Chawla
- Department of Food Technology & Nutrition, Lovely Professional University, 144411, Phagwara, India.
| | - Ankush Relhan
- Department of Horticulture, Lovely Professional University, 144411, Phagwara, India.
| | - Aparajita Bhasin
- Department of Food Technology & Nutrition, Lovely Professional University, 144411, Phagwara, India.
| |
Collapse
|
5
|
Liu D, Vargas-García CA, Singh A, Umen J. A cell-based model for size control in the multiple fission alga Chlamydomonas reinhardtii. Curr Biol 2023; 33:5215-5224.e5. [PMID: 37949064 PMCID: PMC10750806 DOI: 10.1016/j.cub.2023.10.023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 08/03/2023] [Accepted: 10/16/2023] [Indexed: 11/12/2023]
Abstract
Understanding how population-size homeostasis emerges from stochastic individual cell behaviors remains a challenge in biology.1,2,3,4,5,6,7 The unicellular green alga Chlamydomonas reinhardtii (Chlamydomonas) proliferates using a multiple fission cell cycle, where a prolonged G1 phase is followed by n rounds of alternating division cycles (S/M) to produce 2n daughters. A "Commitment" sizer in mid-G1 phase ensures sufficient cell growth before completing the cell cycle. A mitotic sizer couples mother-cell size to division number (n) such that daughter size distributions are uniform regardless of mother size distributions. Although daughter size distributions were highly robust to altered growth conditions, ∼40% of daughter cells fell outside of the 2-fold range expected from a "perfect" multiple fission sizer.7,8 A simple intuitive power law model with stochastic noise failed to reproduce individual division behaviors of tracked single cells. Through additional iterative modeling, we identified an alternative modified threshold (MT) model, where cells need to cross a threshold greater than 2-fold their median starting size to become division-competent (i.e., Committed), after which their behaviors followed a power law model. The Commitment versus mitotic size threshold uncoupling in the MT model was likely a key pre-adaptation in the evolution of volvocine algal multicellularity. A similar experimental approach was used in size mutants mat3/rbr and dp1 that are, respectively, missing repressor or activator subunits of the retinoblastoma tumor suppressor complex (RBC). Both mutants showed altered relationships between Commitment and mitotic sizer, suggesting that RBC functions to decouple the two sizers.
Collapse
Affiliation(s)
- Dianyi Liu
- Donald Danforth Plant Science Center, 975 N Warson Rd, St. Louis, MO 63132, USA; Department of Biology, University of Missouri - St. Louis, 1 University Blvd, St. Louis, MO 63121, USA
| | | | - Abhyudai Singh
- Department of Electrical and Computer Engineering, Department of Biomedical Engineering, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19716, USA.
| | - James Umen
- Donald Danforth Plant Science Center, 975 N Warson Rd, St. Louis, MO 63132, USA.
| |
Collapse
|
6
|
Câmara PEAS, de Menezes GCA, Lopes FAC, da Silva Paiva T, Carvalho-Silva M, Convey P, Amorim ET, Rosa LH. Investigating non-fungal eukaryotic diversity in snow in the Antarctic Peninsula region using DNA metabarcoding. Extremophiles 2023; 28:3. [PMID: 37962679 DOI: 10.1007/s00792-023-01322-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 10/16/2023] [Indexed: 11/15/2023]
Abstract
Snow is a unique microhabitat, despite being a harsh environment, multiple life forms have adapted to survive in it. While algae, bacteria and fungi are dominant microorganisms in Antarctic snow, little is known about other organisms that may be present in this habitat. We used metabarcoding to investigate DNA sequence diversity of non-fungal eukaryotes present in snow obtained from six different sites across the Maritime Antarctica. A total of 20 taxa were assigned to obtained sequences, representing five Kingdoms (Chromista, Protozoa, Viridiplantae and Metazoa) and four phyla (Ciliophora, Cercozoa, Chlorophyta and Cnidaria). The highest diversity indices were detected in Trinity Peninsula followed by Robert Island, Arctowski Peninsula, Deception Island, King George Island and Snow Island. The most abundant assignments were to Trebouxiophyceae, followed by Chlamydomonas nivalis and Chlamidomonadales. No taxa were detected at all sites. Three potentially new records for Antarctica were detected: two Ciliophora (Aspidisca magna and Stokesia sp.) and the green algae Trebouxia potteri. Our data suggested that similarities found between the sites may be more related with snow physicochemical properties rather than geographic proximity or latitude. This study provides new insights into the diversity and distribution of eukaryotic organisms in Antarctic snow.
Collapse
Affiliation(s)
- Paulo E A S Câmara
- Departamento de Botânica, Universidade de Brasília, Brasília, 70910-900, Brasil.
- Algas E Plantas, Pós Graduação Em Fungos, Universidade Federal de Santa Catarina, Florianoplis, Santa Catarina, Brazil.
| | - Graciéle C A de Menezes
- Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brasil
| | - Fabyano A C Lopes
- Laboratório de Microbiologia, Universidade Federal Do Tocantins, Porto Nacional, Brazil
| | - Thiago da Silva Paiva
- Laboratório de Protistologia, Instituto de Biologia, Universidade Federal Do Rio de Janeiro, Rio de Janeiro, Brazil
| | | | - Peter Convey
- British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET, UK
- Department of Zoology, University of Johannesburg, PO Box 524, Auckland Park, 2006, South Africa
- Biodiversity of Antarctic and Sub-Antarctic Ecosystems (BASE), Santiago, Chile
| | - Eduardo T Amorim
- Centro Nacional de Conservação da Flora/Instituto de Pesquisas Jardim Botânico Do Rio de Janeiro (CNCFlora/JBRJ), Rio de Janeiro, Brazil
| | - Luiz H Rosa
- Departamento de Microbiologia, Universidade Federal de Minas Gerais, Belo Horizonte, 31270-901, Brasil
| |
Collapse
|
7
|
Kalra I, Wang X, Zhang R, Morgan-Kiss R. High salt-induced PSI-supercomplex is associated with high CEF and attenuation of state transitions. Photosynth Res 2023; 157:65-84. [PMID: 37347385 PMCID: PMC10484818 DOI: 10.1007/s11120-023-01032-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 06/05/2023] [Indexed: 06/23/2023]
Abstract
While PSI-driven cyclic electron flow (CEF) and assembly of thylakoid supercomplexes have been described in model organisms like Chlamydomonas reinhardtii, open questions remain regarding their contributions to survival under long-term stress. The Antarctic halophyte, C. priscuii UWO241 (UWO241), possesses constitutive high CEF rates and a stable PSI-supercomplex as a consequence of adaptation to permanent low temperatures and high salinity. To understand whether CEF represents a broader acclimation strategy to short- and long-term stress, we compared high salt acclimation between the halotolerant UWO241, the salt-sensitive model, C. reinhardtii, and a moderately halotolerant Antarctic green alga, C. sp. ICE-MDV (ICE-MDV). CEF was activated under high salt and associated with increased non-photochemical quenching in all three Chlamydomonas species. Furthermore, high salt-acclimated cells of either strain formed a PSI-supercomplex, while state transition capacity was attenuated. How the CEF-associated PSI-supercomplex interferes with state transition response is not yet known. We present a model for interaction between PSI-supercomplex formation, state transitions, and the important role of CEF for survival during long-term exposure to high salt.
Collapse
Affiliation(s)
- Isha Kalra
- Department of Microbiology, Miami University, Oxford, OH 45056 USA
- Present Address: Department of Biology, University of Southern California, Los Angeles, CA 90089 USA
| | - Xin Wang
- Department of Microbiology, Miami University, Oxford, OH 45056 USA
| | - Ru Zhang
- Donald Danforth Plant Science Center, St. Louis, MO 63132 USA
| | | |
Collapse
|
8
|
Nievergelt AP, Diener DR, Bogdanova A, Brown T, Pigino G. Efficient precision editing of endogenous Chlamydomonas reinhardtii genes with CRISPR-Cas. Cell Rep Methods 2023; 3:100562. [PMID: 37671018 PMCID: PMC10475843 DOI: 10.1016/j.crmeth.2023.100562] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 11/11/2022] [Accepted: 07/28/2023] [Indexed: 09/07/2023]
Abstract
CRISPR-Cas genome engineering in the unicellular green algal model Chlamydomonas reinhardtii has until now been primarily applied to targeted gene disruption, whereas scarless knockin transgenesis has generally been considered difficult in practice. We have developed an efficient homology-directed method for knockin mutagenesis in Chlamydomonas by delivering CRISPR-Cas ribonucleoproteins and a linear double-stranded DNA (dsDNA) donor into cells by electroporation. Our method allows scarless integration of fusion tags and sequence modifications of proteins without the need for a preceding mutant line. We also present methods for high-throughput crossing of transformants and a custom quantitative PCR (qPCR)-based high-throughput screening of mutants as well as meiotic progeny. We demonstrate how to use this pipeline to facilitate the generation of mutant lines without residual selectable markers by co-targeted insertion. Finally, we describe how insertional cassettes can be erroneously mutated during insertion and suggest strategies to select for lines that are modified as designed.
Collapse
Affiliation(s)
- Adrian Pascal Nievergelt
- Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstraße 108, 01307 Dresden, Germany
| | - Dennis Ray Diener
- Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstraße 108, 01307 Dresden, Germany
| | - Aliona Bogdanova
- Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstraße 108, 01307 Dresden, Germany
| | - Thomas Brown
- Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstraße 108, 01307 Dresden, Germany
- DRESDEN-concept Genome Center (DcGC), Center for Molecular and Cellular Bioengineering, Technische Universität Dresden, Dresden, Germany
| | - Gaia Pigino
- Human Technopole, V.le Rita Levi-Montalcini, 1, 20017 Milan, Italy
| |
Collapse
|
9
|
Zhang RK, Sun WY, Liu YX, Zhang EY, Fan ZC. RABL2 promotes the outward transition zone passage of signaling proteins in cilia via ARL3. Proc Natl Acad Sci U S A 2023; 120:e2302603120. [PMID: 37579161 PMCID: PMC10450674 DOI: 10.1073/pnas.2302603120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Accepted: 07/10/2023] [Indexed: 08/16/2023] Open
Abstract
Certain transmembrane and membrane-tethered signaling proteins export from cilia as BBSome cargoes via the outward BBSome transition zone (TZ) diffusion pathway, indispensable for maintaining their ciliary dynamics to enable cells to sense and transduce extracellular stimuli inside the cell. Murine Rab-like 2 (Rabl2) GTPase resembles Chlamydomonas Arf-like 3 (ARL3) GTPase in promoting outward TZ passage of the signaling protein cargo-laden BBSome. During this process, ARL3 binds to and recruits the retrograde IFT train-dissociated BBSome as its effector to diffuse through the TZ for ciliary retrieval, while how RABL2 and ARL3 cross talk in this event remains uncertain. Here, we report that Chlamydomonas RABL2 in a GTP-bound form (RABL2GTP) cycles through cilia via IFT as an IFT-B1 cargo, dissociates from retrograde IFT trains at a ciliary region right above the TZ, and converts to RABL2GDP for activating ARL3GDP as an ARL3 guanine nucleotide exchange factor. This confers ARL3GTP to detach from the ciliary membrane and become available for binding and recruiting the phospholipase D (PLD)-laden BBSome, autonomous of retrograde IFT association, to diffuse through the TZ for ciliary retrieval. Afterward, RABL2GDP exits cilia by being bound to the ARL3GTP/BBSome entity as a BBSome cargo. Our data identify ciliary signaling proteins exported from cilia via the RABL2-ARL3 cascade-mediated outward BBSome TZ diffusion pathway. According to this model, hedgehog signaling defect-induced Bardet-Biedl syndrome caused by RABL2 mutations in humans could be well explained in a mutation-specific manner, providing us with a mechanistic understanding behind the outward BBSome TZ passage required for proper ciliary signaling.
Collapse
Affiliation(s)
- Rui-Kai Zhang
- State Key Laboratory of Food Nutrition and Safety, Institute of Health Biotechnology, Tianjin University of Science and Technology, Tianjin300457, China
| | - Wei-Yue Sun
- State Key Laboratory of Food Nutrition and Safety, Institute of Health Biotechnology, Tianjin University of Science and Technology, Tianjin300457, China
| | - Yan-Xia Liu
- State Key Laboratory of Food Nutrition and Safety, Institute of Health Biotechnology, Tianjin University of Science and Technology, Tianjin300457, China
| | | | - Zhen-Chuan Fan
- State Key Laboratory of Food Nutrition and Safety, Institute of Health Biotechnology, Tianjin University of Science and Technology, Tianjin300457, China
| |
Collapse
|
10
|
Chae H, Kim S, Choi HG, Kim JH, Han SJ, Kim EJ. Arctic Sea Ice Microalga Chlamydomonas latifrons KNF0041: Identification and Statistical Optimization of Medium for Enhanced Biomass and Omega-3/Omega-6. Mar Drugs 2023; 21:454. [PMID: 37623735 PMCID: PMC10456082 DOI: 10.3390/md21080454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 08/10/2023] [Accepted: 08/16/2023] [Indexed: 08/26/2023] Open
Abstract
Polar microorganisms produce biologically active compounds that enable them to survive in harsh environments. These compounds have potential biomedical applications. The green microalga Chlamydomonas latifrons KNF0041, isolated from Arctic sea ice, has been found to produce polyunsaturated fatty acids (PUFAs), including omega-3 and omega-6, which have antioxidant properties. To improve the biomass production of strain KNF0041, statistical methods such as the Plackett-Burman design, Box-Behnken design, and response surface methodology (RSM) were utilized for medium optimization. The optimized medium was designed with increased potassium phosphate content and reduced acetic acid (AcOH) content. The use of the optimized medium resulted in an increase in the cell number as biomass of strain KNF0041 by 34.18% and the omega-3 and omega-6 fatty acid (FA) content by 10.04% and 58.29%, respectively, compared to that in normal TAP medium, which is known as the growth medium for Chlamydomonas culture. In this study, Chlamydomonas latifrons was discovered for the first time in the polar region and identified using morphology and molecular phylogenetic analyses, the secondary structures of the internal transcribed spacers, and optimized culture conditions. The results of this study provide an efficient method for the application of polar microalgae for the production of bioactive compounds.
Collapse
Affiliation(s)
- Hyunsik Chae
- Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea; (H.C.)
| | - Sanghee Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea; (H.C.)
| | - Han-Gu Choi
- Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea; (H.C.)
| | - Ji Hee Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea; (H.C.)
| | - Se Jong Han
- Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea; (H.C.)
- Department of Polar Sciences, University of Science and Technology, Incheon 21990, Republic of Korea
| | - Eun Jae Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon 21990, Republic of Korea; (H.C.)
| |
Collapse
|
11
|
Geng S, Hamaji T, Ferris PJ, Gao M, Nishimura Y, Umen J. A conserved RWP-RK transcription factor VSR1 controls gametic differentiation in volvocine algae. Proc Natl Acad Sci U S A 2023; 120:e2305099120. [PMID: 37436957 PMCID: PMC10629530 DOI: 10.1073/pnas.2305099120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 06/12/2023] [Indexed: 07/14/2023] Open
Abstract
Volvocine green algae are a model for understanding the evolution of mating types and sexes. They are facultatively sexual, with gametic differentiation occurring in response to nitrogen starvation (-N) in most genera and to sex inducer hormone in Volvox. The conserved RWP-RK family transcription factor (TF) MID is encoded by the minus mating-type locus or male sex-determining region of heterothallic volvocine species and dominantly determines minus or male gametic differentiation. However, the factor(s) responsible for establishing the default plus or female differentiation programs have remained elusive. We performed a phylo-transcriptomic screen for autosomal RWP-RK TFs induced during gametogenesis in unicellular isogamous Chlamydomonas reinhardtii (Chlamydomonas) and in multicellular oogamous Volvox carteri (Volvox) and identified a single conserved ortho-group we named Volvocine Sex Regulator 1 (VSR1). Chlamydomonas vsr1 mutants of either mating type failed to mate and could not induce expression of key mating-type-specific genes. Similarly, Volvox vsr1 mutants in either sex could initiate sexual embryogenesis, but the presumptive eggs or androgonidia (sperm packet precursors) were infertile and unable to express key sex-specific genes. Yeast two-hybrid assays identified a conserved domain in VSR1 capable of self-interaction or interaction with the conserved N terminal domain of MID. In vivo coimmunoprecipitation experiments demonstrated association of VSR1 and MID in both Chlamydomonas and Volvox. These data support a new model for volvocine sexual differentiation where VSR1 homodimers activate expression of plus/female gamete-specific-genes, but when MID is present, MID-VSR1 heterodimers are preferentially formed and activate minus/male gamete-specific-genes.
Collapse
Affiliation(s)
- Sa Geng
- Donald Danforth Plant Science Center, St Louis, MO63132
| | - Takashi Hamaji
- Donald Danforth Plant Science Center, St Louis, MO63132
- Department of Botany, Graduate School of Science, Kyoto University, Kyoto606-8502, Japan
- Research and Development Initiative, Chuo University, Bunkyo-ku, Tokyo112-8551, Japan
| | | | - Minglu Gao
- Donald Danforth Plant Science Center, St Louis, MO63132
| | - Yoshiki Nishimura
- Department of Botany, Graduate School of Science, Kyoto University, Kyoto606-8502, Japan
| | - James Umen
- Donald Danforth Plant Science Center, St Louis, MO63132
| |
Collapse
|
12
|
Chen G, Hu Z, Ebrahimi A, Johnson DR, Wu F, Sun Y, Shen R, Liu L, Wang G. Chemotactic movement and zeta potential dominate Chlamydomonas microsphaera attachment and biocathode development. Environ Technol 2023; 44:1838-1849. [PMID: 34859742 DOI: 10.1080/09593330.2021.2014575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 11/29/2021] [Indexed: 06/13/2023]
Abstract
Microalgal cell attaching and biofilm formation are critical in the application of microalgal biocathode, which severs as one of the hopeful candidates to an original cathode in bioelectrochemical systems. Many efforts have been put in biofilm formation and bioelectrochemical systems for years, but the predominant factors shaping microalgal biocathode formation are sketchy. We launched a pair of researches to investigate microalgal attachment and biofilm formation in the presence/absence of applied voltages using Chlamydomonas microsphaera as a model unicellular motile microalga. In this study, we presented how microalga attached and biofilm formed on a carbon felt surface without applied voltages and try to manifest the most important aspects in this process. Results showed that while nutrient sources did not directly regulate cell attachment onto the carbon felt, limited initial nutrient concentration nevertheless promoted cell attachment. Specifically, nutrient availability did not influence the early stage (20-60 min) of microalgal cell attachment but did significantly impact cell attachment during later stages (240-720 min). Further analysis revealed that nutrient availability-mediated chemotactic movements and zeta potential are crucial to facilitate the initial attachment and subsequent biofilm formation of C. microsphaera onto the surfaces, serving as an important factor controlling microalgal surface attachment. Our results demonstrate that nutrient availability is a dominant factor controlling microalgal surface attachment and subsequent biofilm formation processes. This study provides a mechanistic understanding of microalgal surface attachment and biofilm formation processes on carbon felts surfaces in the absence of applied voltages.
Collapse
Affiliation(s)
- Guowei Chen
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Zhen Hu
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Ali Ebrahimi
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - David R Johnson
- Department of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
| | - Fazhu Wu
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Yifei Sun
- Department of Soil and Water Sciences, China Agricultural University, Beijing, People's Republic of China
| | - Renhao Shen
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Li Liu
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Gang Wang
- Department of Soil and Water Sciences, China Agricultural University, Beijing, People's Republic of China
| |
Collapse
|
13
|
Carbó M, Chaturvedi P, Álvarez A, Pineda-Cevallos D, Ghatak A, González PR, Cañal MJ, Weckwerth W, Valledor L. Ferroptosis is the key cellular process mediating Bisphenol A responses in Chlamydomonas and a promising target for enhancing microalgae-based bioremediation. J Hazard Mater 2023; 448:130997. [PMID: 36860062 DOI: 10.1016/j.jhazmat.2023.130997] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/31/2023] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
Microplastics are one of the major pollutants in aquatic environments. Among their components, Bisphenol A (BPA) is one of the most abundant and dangerous, leading to endocrine disorders deriving even in different types of cancer in mammals. However, despite this evidence, the xenobiotic effects of BPA over plantae and microalgae still need to be better understood at the molecular level. To fill this gap, we characterized the physiological and proteomic response of Chlamydomonas reinhardtii during long-term BPA exposure by analyzing physiological and biochemical parameters combined with proteomics. BPA imbalanced iron and redox homeostasis, disrupting cell function and triggering ferroptosis. Intriguingly, this microalgae defense against this pollutant is recovering at both molecular and physiological levels while starch accumulation at 72 h of BPA exposure. In this work, we addressed the molecular mechanisms involved in BPA exposure, demonstrating for the first time the induction of ferroptosis in a eukaryotic alga and how ROS detoxification mechanisms and other specific proteomic rearrangements reverted this situation. These results are of great significance not only for understanding the BPA toxicology or exploring the molecular mechanisms of ferroptosis in microalgae but also for defining novel target genes for microplastic bioremediation efficient strain development.
Collapse
Affiliation(s)
- María Carbó
- Department of Organisms and Systems Biology and University Institute of Biotechnology of Asturias (IUBA), University of Oviedo, Asturias, Spain
| | - Palak Chaturvedi
- Molecular Systems Biology Lab (MOSYS), Department of Functional and Evolutionary Ecology, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
| | - Ana Álvarez
- Department of Organisms and Systems Biology and University Institute of Biotechnology of Asturias (IUBA), University of Oviedo, Asturias, Spain
| | | | - Arindam Ghatak
- Molecular Systems Biology Lab (MOSYS), Department of Functional and Evolutionary Ecology, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
| | | | - María Jesús Cañal
- Department of Organisms and Systems Biology and University Institute of Biotechnology of Asturias (IUBA), University of Oviedo, Asturias, Spain
| | - Wolfram Weckwerth
- Molecular Systems Biology Lab (MOSYS), Department of Functional and Evolutionary Ecology, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
| | - Luis Valledor
- Department of Organisms and Systems Biology and University Institute of Biotechnology of Asturias (IUBA), University of Oviedo, Asturias, Spain.
| |
Collapse
|
14
|
Zhou Y, He Y, Guo X, Dai J, Lai X, Hong B, Chen B, Wang M. Pilot-scale remediation of rare earth elements ammonium wastewater by Chlamydomonas sp. YC in summer under outdoor conditions. Bioresour Technol 2023; 372:128674. [PMID: 36702323 DOI: 10.1016/j.biortech.2023.128674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 01/18/2023] [Accepted: 01/21/2023] [Indexed: 06/18/2023]
Abstract
This work evaluated the performance of real rare earth elements (REEs) wastewater purification and carbon dioxide (CO2) fixation by Chlamydomonas sp. YC with pilot-scale airlift-photobioreactors (AL-PBRs), tubular photobioreactors (TB-PBRs) and raceway ponds (ORWPs) under high-temperature outdoor conditions in summer. The obtained results showed that Chlamydomonas sp. YC at 1 g/L oyster shell piece (OSP) and 3 % CO2 had the highest biomass (1.9 g/L) and NH4+-N removal efficiency (34.0 %) during the REEs wastewater treatment. Among the selected photobioreactors, Chlamydomonas sp. YC to treat real REEs wastewater at 3 % CO2 under high-temperature outdoor conditions attained the highest biomass (2.3 g/L) in the TB-PBRs with the best NH4+-N removal efficiency (43.0 %). Furthermore, the input cost and CO2 net sequestration evaluation revealed that TB-PBRs was more economical photobioreactors to treat REEs wastewater and fix CO2 by Chlamydomonas sp. YC, providing some vital scientific details for REEs wastewater and CO2 fixation by microalgal biotechnology.
Collapse
Affiliation(s)
- Youcai Zhou
- College of Life Science, Fujian Normal University, Fuzhou 350117, China
| | - Yongjin He
- College of Life Science, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou 350117, China
| | - Xu Guo
- College of Life Science, Fujian Normal University, Fuzhou 350117, China
| | - Jingxuan Dai
- College of Life Science, Fujian Normal University, Fuzhou 350117, China
| | - Xiaobin Lai
- Longyan Rare Earth Development CO., LTD, China
| | - Bengen Hong
- Longyan Rare Earth Development CO., LTD, China
| | - Bilian Chen
- College of Life Science, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou 350117, China
| | - Mingzi Wang
- College of Life Science, Fujian Normal University, Fuzhou 350117, China; Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou 350117, China.
| |
Collapse
|
15
|
Mattoon EM, McHargue W, Bailey CE, Zhang N, Chen C, Eckhardt J, Daum CG, Zane M, Pennacchio C, Schmutz J, O'Malley RC, Cheng J, Zhang R. High-throughput identification of novel heat tolerance genes via genome-wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii. Plant Cell Environ 2023; 46:865-888. [PMID: 36479703 PMCID: PMC9898210 DOI: 10.1111/pce.14507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 11/04/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
Different high temperatures adversely affect crop and algal yields with various responses in photosynthetic cells. The list of genes required for thermotolerance remains elusive. Additionally, it is unclear how carbon source availability affects heat responses in plants and algae. We utilized the insertional, indexed, genome-saturating mutant library of the unicellular, eukaryotic green alga Chlamydomonas reinhardtii to perform genome-wide, quantitative, pooled screens under moderate (35°C) or acute (40°C) high temperatures with or without organic carbon sources. We identified heat-sensitive mutants based on quantitative growth rates and identified putative heat tolerance genes (HTGs). By triangulating HTGs with heat-induced transcripts or proteins in wildtype cultures and MapMan functional annotations, we presented a high/medium-confidence list of 933 Chlamydomonas genes with putative roles in heat tolerance. Triangulated HTGs include those with known thermotolerance roles and novel genes with little or no functional annotation. About 50% of these high-confidence HTGs in Chlamydomonas have orthologs in green lineage organisms, including crop species. Arabidopsis thaliana mutants deficient in the ortholog of a high-confidence Chlamydomonas HTG were also heat sensitive. This work expands our knowledge of heat responses in photosynthetic cells and provides engineering targets to improve thermotolerance in algae and crops.
Collapse
Affiliation(s)
- Erin M. Mattoon
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
- Plant and Microbial Biosciences Program, Division of Biology and Biomedical Sciences, Washington University in Saint Louis, St. Louis, Missouri 63130, USA
| | - William McHargue
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
| | | | - Ningning Zhang
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
| | - Chen Chen
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri 65211, USA
| | - James Eckhardt
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
| | - Chris G. Daum
- U.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Matt Zane
- U.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Christa Pennacchio
- U.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Jeremy Schmutz
- U.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Ronan C. O'Malley
- U.S. Department of Energy, Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Jianlin Cheng
- Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri 65211, USA
| | - Ru Zhang
- Donald Danforth Plant Science Center, St. Louis, Missouri 63132, USA
| |
Collapse
|
16
|
Abstract
Chlamydomonas reinhardtii and Saccharomyces cerevisiae are currently the two micro-organisms in which genetic transformation of mitochondria is routinely performed. The generation of a large variety of defined alterations as well as the insertion of ectopic genes in the mitochondrial genome (mtDNA) are possible, especially in yeast. Biolistic transformation of mitochondria is achieved through the bombardment of microprojectiles coated with DNA, which can be incorporated into mtDNA thanks to the highly efficient homologous recombination machinery present in S. cerevisiae and C. reinhardtii organelles. Despite a low frequency of transformation, the isolation of transformants in yeast is relatively quick and easy, since several natural or artificial selectable markers are available, while the selection in C. reinhardtii remains long and awaits new markers. Here, we describe the materials and techniques used to perform biolistic transformation, in order to mutagenize endogenous mitochondrial genes or insert novel markers into mtDNA. Although alternative strategies to edit mtDNA are being set up, so far, insertion of ectopic genes relies on the biolistic transformation techniques.
Collapse
Affiliation(s)
- Nathalie Bonnefoy
- Institute of Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette cedex, France
| | - Claire Remacle
- Genetics and physiology of microalgae, InBios/Phytosystems Research Unit, University of Liege, Liege, Belgium.
| |
Collapse
|
17
|
Moulin SLY. From the archives: Oxidative stress tolerance in Chlamydomonas and herbicide resistance in the weedy species Eleusine indica. Plant Cell 2023; 35:626-627. [PMID: 36478194 PMCID: PMC9940867 DOI: 10.1093/plcell/koac356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 12/02/2022] [Indexed: 06/17/2023]
|
18
|
Wang X, Wang WX. Cell cycle-dependent Cu uptake explained the heterogenous responses of Chlamydomonas to Cu exposure. Environ Pollut 2023; 319:121013. [PMID: 36608730 DOI: 10.1016/j.envpol.2023.121013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 12/11/2022] [Accepted: 01/03/2023] [Indexed: 06/17/2023]
Abstract
Growing evidence suggested that microorganisms exhibited heterogeneous sensitivity to toxicants, but their underlying mechanisms remain largely unknown. The asynchronous cell cycle progression in natural population implies the connection between cell cycle and heterogeneity. Here, the heterogenous responses of Chlamydomonas reinhardtii upon Cu stress were confirmed with the aid of a fluorometric probe for imaging Cu(I), implying the connection with cell cycle. Our results further indicated that the increase of labile Cu(I) was related to the cell division, leading to the fluctuation of labile Cu(I) with diurnal cycle and cell cycle, respectively. However, lack of Cu mainly influenced the cell division. We demonstrated that G2/M phase was the critical stage requiring high Cu quota during cell division. Specifically, algae at G2/M phase required 10-fold of Cu quota compared with that at G1 phase, which was related to the mitochondrial replication. Eventually, the heterogeneous Cu uptake ability of algae at different cell phases led to the heterogeneous responses to Cu exposure. Overall, Cu could influence the cell cycle through mediating the cell division, and in turn algae at different cell phases exhibited different Cu sensitivities. This study firstly uncovered the underlying mechanisms of heterogeneous Cu sensitivity for phytoplankton, which could help to evaluate the potential ecological risks of Cu.
Collapse
Affiliation(s)
- Xiangrui Wang
- School of Energy and Environment and State Key Laboratory of Marine Pollution, City University of Hong Kong, Kowloon, Hong Kong, China; Research Centre for the Oceans and Human Health, City University of Hong Kong Shenzhen Research Institute, Shenzhen, 518057, China
| | - Wen-Xiong Wang
- School of Energy and Environment and State Key Laboratory of Marine Pollution, City University of Hong Kong, Kowloon, Hong Kong, China; Research Centre for the Oceans and Human Health, City University of Hong Kong Shenzhen Research Institute, Shenzhen, 518057, China.
| |
Collapse
|
19
|
Vidal‐Meireles A, Kuntam S, Széles E, Tóth D, Neupert J, Bock R, Tóth SZ. The lifetime of the oxygen-evolving complex subunit PSBO depends on light intensity and carbon availability in Chlamydomonas. Plant Cell Environ 2023; 46:422-439. [PMID: 36320098 PMCID: PMC10100022 DOI: 10.1111/pce.14481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 10/13/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
PSBO is essential for the assembly of the oxygen-evolving complex in plants and green algae. Despite its importance, we lack essential information on its lifetime and how it depends on the environmental conditions. We have generated nitrate-inducible PSBO amiRNA lines in the green alga Chlamydomonas reinhardtii. Transgenic strains grew normally under non-inducing conditions, and their photosynthetic performance was comparable to the control strain. Upon induction of the PSBO amiRNA constructs, cell division halted. In acetate-containing medium, cellular PSBO protein levels decreased by 60% within 24 h in the dark, by 75% in moderate light, and in high light, the protein completely degraded. Consequently, the photosynthetic apparatus became strongly damaged, probably due to 'donor-side-induced photoinhibition', and cellular ultrastructure was also severely affected. However, in the absence of acetate during induction, PSBO was remarkably stable at all light intensities and less substantial changes occurred in photosynthesis. Our results demonstrate that the lifetime of PSBO strongly depends on the light intensity and carbon availability, and thus, on the metabolic status of the cells. We also confirm that PSBO is required for photosystem II stability in C. reinhardtii and demonstrate that its specific loss also entails substantial changes in cell morphology and cell cycle.
Collapse
Affiliation(s)
- André Vidal‐Meireles
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
- Present address:
Institute of Plant Biology and Biotechnology (IBBP), Westfälische Wilhelms‐Universität Münster (WWU)MünsterGermany
| | - Soujanya Kuntam
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
| | - Eszter Széles
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
- Doctoral School of BiologyUniversity of SzegedSzegedHungary
| | - Dávid Tóth
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
- Doctoral School of BiologyUniversity of SzegedSzegedHungary
| | - Juliane Neupert
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Ralph Bock
- Max Planck Institute of Molecular Plant PhysiologyPotsdam‐GolmGermany
| | - Szilvia Z. Tóth
- Laboratory for Molecular Photobioenergetics, Biological Research CentreInstitute of Plant BiologySzegedHungary
| |
Collapse
|
20
|
Catalan RE, Fragkopoulos AA, von Trott N, Kelterborn S, Baidukova O, Hegemann P, Bäumchen O. Light-regulated adsorption and desorption of Chlamydomonas cells at surfaces. Soft Matter 2023; 19:306-314. [PMID: 36520090 DOI: 10.1039/d2sm01039a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Microbial colonization of surfaces represents the first step towards biofilm formation, which is a recurring phenomenon in nature with beneficial and detrimental implications in technological and medical settings. Consequently, there is interest in elucidating the fundamental aspects of the initial stages of biofilm formation of microorganisms on solid surfaces. While most of the research is oriented to understand bacterial surface colonization, the fundamental principles of surface colonization of motile, photosynthetic microbes remain largely unexplored so far. Recent single-cell studies showed that the flagellar adhesion of Chlamydomonas reinhardtii is switched on in blue light and switched off under red light [Kreis et al., Nat. Phys., 2018, 14, 45-49]. Here, we study this light-switchable surface association on the population level and measure the kinetics of adsorption and desorption of suspensions of motile C. reinhardtii cells on glass surfaces using bright-field optical microscopy. We observe that both processes exhibit a response lag relative to the time at which the blue- and red-light conditions are set and model this feature using time-delayed Langmuir-type kinetics. We find that cell adsorption occurs significantly faster than desorption, which we attribute to the protein-mediated molecular adhesion mechanism of the cells. Adsorption experiments using phototactically blind C. reinhardtii mutants demonstrate that phototaxis does not affect the cell adsorption kinetics. Hence, this framework can be used as an assay for characterizing the dynamics of the surface colonization of microbial species exhibiting light-regulated surface adhesion under precisely controlled environmental conditions.
Collapse
Affiliation(s)
- Rodrigo E Catalan
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
- Experimental Physics V, University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany.
| | - Alexandros A Fragkopoulos
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
- Experimental Physics V, University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany.
| | - Nicolas von Trott
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
| | - Simon Kelterborn
- Institute of Biology, Experimental Biophysics, Humboldt-Universität, Invalidenstraße 42, 10115 Berlin, Germany
- Institute of Translational Physiology, Charité - Universitätsmedizin Berlin, Corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, 10117 Berlin, Germany
| | - Olga Baidukova
- Institute of Biology, Experimental Biophysics, Humboldt-Universität, Invalidenstraße 42, 10115 Berlin, Germany
| | - Peter Hegemann
- Institute of Biology, Experimental Biophysics, Humboldt-Universität, Invalidenstraße 42, 10115 Berlin, Germany
| | - Oliver Bäumchen
- Max Planck Institute for Dynamics and Self-Organization (MPIDS), Am Faßberg 17, 37077 Göttingen, Germany
- Experimental Physics V, University of Bayreuth, Universitätsstraße 30, 95447 Bayreuth, Germany.
| |
Collapse
|
21
|
Leptos KC, Chioccioli M, Furlan S, Pesci AI, Goldstein RE. Phototaxis of Chlamydomonas arises from a tuned adaptive photoresponse shared with multicellular Volvocine green algae. Phys Rev E 2023; 107:014404. [PMID: 36797913 DOI: 10.1103/physreve.107.014404] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 12/16/2022] [Indexed: 06/18/2023]
Abstract
A fundamental issue in biology is the nature of evolutionary transitions from unicellular to multicellular organisms. Volvocine algae are models for this transition, as they span from the unicellular biflagellate Chlamydomonas to multicellular species of Volvox with up to 50,000 Chlamydomonas-like cells on the surface of a spherical extracellular matrix. The mechanism of phototaxis in these species is of particular interest since they lack a nervous system and intercellular connections; steering is a consequence of the response of individual cells to light. Studies of Volvox and Gonium, a 16-cell organism with a plate-like structure, have shown that the flagellar response to changing illumination of the cellular photosensor is adaptive, with a recovery time tuned to the rotation period of the colony around its primary axis. Here, combining high-resolution studies of the flagellar photoresponse of micropipette-held Chlamydomonas with 3D tracking of freely swimming cells, we show that such tuning also underlies its phototaxis. A mathematical model is developed based on the rotations around an axis perpendicular to the flagellar beat plane that occur through the adaptive response to oscillating light levels as the organism spins. Exploiting a separation of timescales between the flagellar photoresponse and phototurning, we develop an equation of motion that accurately describes the observed photoalignment. In showing that the adaptive timescales in Volvocine algae are tuned to the organisms' rotational periods across three orders of magnitude in cell number, our results suggest a unified picture of phototaxis in green algae in which the asymmetry in torques that produce phototurns arise from the individual flagella of Chlamydomonas, the flagellated edges of Gonium, and the flagellated hemispheres of Volvox.
Collapse
Affiliation(s)
- Kyriacos C Leptos
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
| | - Maurizio Chioccioli
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
| | - Silvano Furlan
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
| | - Adriana I Pesci
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
| | - Raymond E Goldstein
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
| |
Collapse
|
22
|
Crespo JL, Pérez-Pérez ME. Monitoring Autophagic Flux in the Model Single-Celled Microalga Chlamydomonas reinhardtii. Methods Mol Biol 2023; 2581:123-134. [PMID: 36413315 DOI: 10.1007/978-1-0716-2784-6_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Autophagy is a catabolic process by which eukaryotic cells degrade and recycle unnecessary or damaged intracellular components to maintain cellular homeostasis and to cope with stress. The development of specific tools to monitor autophagy in microalgae and plants has been fundamental to investigate this catabolic pathway in photosynthetic organisms. The protein ATG8 is a widely used molecular marker of autophagy in all eukaryotes, including the model microalga Chlamydomonas reinhardtii. The drug concanamycin A, a specific inhibitor of vacuolar ATPase, has also been extensively used to block autophagic flux in the green lineage. In Chlamydomonas, inhibition of autophagic flux by concanamycin A has been shown to prevent the degradation of ribosomal proteins and the formation of lipid bodies under nitrogen or phosphorous starvation. Here, we detail how the abundance and lipidation state of ATG8 can be used to monitor autophagic flux in Chlamydomonas by western blot analysis.
Collapse
Affiliation(s)
- José L Crespo
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Sevilla, Spain
| | - María Esther Pérez-Pérez
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Sevilla, Spain.
| |
Collapse
|
23
|
Liu P, Ye DM, Chen M, Zhang J, Huang XH, Shen LL, Xia KK, Xu XJ, Xu YC, Guo YL, Wang YC, Huang F. Scaling-up and proteomic analysis reveals photosynthetic and metabolic insights toward prolonged H 2 photoproduction in Chlamydomonas hpm91 mutant lacking proton gradient regulation 5 (PGR5). Photosynth Res 2022; 154:397-411. [PMID: 35974136 PMCID: PMC9722884 DOI: 10.1007/s11120-022-00945-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Abstract
Clean and sustainable H2 production is crucial to a carbon-neutral world. H2 generation by Chlamydomonas reinhardtii is an attractive approach for solar-H2 from H2O. However, it is currently not large-scalable because of lacking desirable strains with both optimal H2 productivity and sufficient knowledge of underlying molecular mechanism. We hereby carried out extensive and in-depth investigations of H2 photoproduction of hpm91 mutant lacking PGR5 (Proton Gradient Regulation 5) toward its up-scaling and fundamental mechanism issues. We show that hpm91 is at least 100-fold scalable (up to 10 L) with continuous H2 collection of 7287 ml H2/10L-HPBR in averagely 26 days under sulfur deprivation. Also, we show that hpm91 is robust and active during sustained H2 photoproduction, most likely due to decreased intracellular ROS relative to wild type. Moreover, we obtained quantitative proteomic profiles of wild type and hpm91 at four representing time points of H2 evolution, leading to 2229 and 1350 differentially expressed proteins, respectively. Compared to wild type, major proteome alterations of hpm91 include not only core subunits of photosystems and those related to anti-oxidative responses but also essential proteins in photosynthetic antenna, C/N metabolic balance, and sulfur assimilation toward both cysteine biosynthesis and sulfation of metabolites during sulfur-deprived H2 production. These results reveal not only new insights of cellular and molecular basis of enhanced H2 production in hpm91 but also provide additional candidate gene targets and modules for further genetic modifications and/or in artificial photosynthesis mimics toward basic and applied research aiming at advancing solar-H2 technology.
Collapse
Affiliation(s)
- Peng Liu
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - De-Min Ye
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Mei Chen
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Jin Zhang
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xia-He Huang
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Li-Li Shen
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ke-Ke Xia
- BGI-Shenzhen, Shenzhen, 518083, China
| | - Xiao-Jing Xu
- BGI-Shenzhen, Shenzhen, 518083, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yong-Chao Xu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ya-Long Guo
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Ying-Chun Wang
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
| | - Fang Huang
- Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
| |
Collapse
|
24
|
Joliot P, Sellés J, Wollman FA, Verméglio A. High efficient cyclic electron flow and functional supercomplexes in Chlamydomonas cells. Biochim Biophys Acta Bioenerg 2022; 1863:148909. [PMID: 35952798 DOI: 10.1016/j.bbabio.2022.148909] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 08/02/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
A very high rate for cyclic electron flow (CEF) around PSI (~180 s-1 or 210 s-1 in minimum medium or in the presence of a carbon source respectively) is measured in the presence of methyl viologen (MV) in intact cells of Chlamydomonas reinhardtii under anaerobic conditions. The observation of an efficient CEF in the presence of methyl viologen is in agreement with the previous results reports of Asada et al. in broken chloroplasts (Plant Cell Physiol. 31(4) (1990) 557-564). From the analysis of the P700 and PC absorbance changes, we propose that a confinement between 2 PC molecules, 1 PSI and 1 cytb6f corresponding to a functional supercomplex is responsible for these high rates of CEF. Supercomplex formation is also observed in the absence of methyl viologen, but with lower maximal CEF rate (about 100 s-1) suggesting that this compound facilitates the mediation of electron transfer from PSI acceptors to the stromal side of cytb6f. Further analysis of CEF in mutants of Chlamydomonas defective in state transitions shows the requirement of a kinase-driven transition to state 2 to establish this functional supercomplex configuration. However, a movement of the LHCII antennae is not involved in this process. We discuss the possible involvement of auxiliary proteins, among which is a small cytb6f-associated polypeptide, the PETO protein, which is one of the targets of the STT7 kinase.
Collapse
Affiliation(s)
- Pierre Joliot
- Laboratoire de Biologie du Chloroplaste et Perception de la Lumière Chez les Microalgues, Institut de Biologie Physico-Chimique, CNRS UMR 7141, Sorbonne Université, Paris, France.
| | - Julien Sellés
- Laboratoire de Biologie du Chloroplaste et Perception de la Lumière Chez les Microalgues, Institut de Biologie Physico-Chimique, CNRS UMR 7141, Sorbonne Université, Paris, France.
| | - Françis-André Wollman
- Laboratoire de Biologie du Chloroplaste et Perception de la Lumière Chez les Microalgues, Institut de Biologie Physico-Chimique, CNRS UMR 7141, Sorbonne Université, Paris, France
| | - André Verméglio
- Laboratoire de Biologie du Chloroplaste et Perception de la Lumière Chez les Microalgues, Institut de Biologie Physico-Chimique, CNRS UMR 7141, Sorbonne Université, Paris, France
| |
Collapse
|
25
|
Zhou X, Jiang X, Chen J, Gao P. Interspecific competition between Microcystis aeruginosa and Chlamydomonas microsphaera stressed by tetracyclines. Environ Sci Pollut Res Int 2022; 29:83262-83272. [PMID: 35761141 DOI: 10.1007/s11356-022-21537-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
Abstract
The extensive use of tetracyclines in human and veterinary medicine causes contamination in the environment that could contribute to the spread of antibiotic-resistant bacteria or competition between species of phytoplankton. In this study, Microcystis aeruginosa (a bloom-forming cyanobacterium) and Chlamydomonas microsphaera (common green alga) were selected to test the effects of different concentrations of tetracyclines (tetracycline and oxytetracycline) in monoculture and co-culture. The results showed that compared with monoculture, the cell growth of C. microsphaera decreased significantly in co-culture treated with different concentrations of tetracycline and oxytetracycline. The ratios of inhibition of M. aeruginosa exposed to 0.1, 2, and 10 mg L-1 of tetracycline varied between 17.7 and 31.37% in co-culture compared with monoculture, while the cell growth of M. aeruginosa was enhanced by treatment with 0.1, 2, and 7.25 mg L-1 of oxytetracycline in co-culture. However, the cell growth of C. microsphaera was significantly inhibited by all the treatments in co-culture. With the treatment of tetracycline, the specific growth rate of M. aeruginosa was 0.36 to 0.31 day-1 in monoculture and co-culture, while that of C. microsphaera ranged from 0.38 to 0.26 day-1 in monoculture, and it decreased from 0.25 day-1 (0 mg L-1) to 0.08 day-1 (10 mg L-1) in co-culture. With the treatment of oxytetracycline, the specific growth rate of M. aeruginosa was stimulated in co-culture, while that of C. microsphaera was significantly inhibited in co-culture compared with monoculture. Therefore, although M. aeruginosa significantly inhibited C. microsphaera in co-culture with the tetracycline-free treatment, the competitive advantage of M. aeruginosa expanded following the addition of low or high concentrations of tetracyclines.
Collapse
Affiliation(s)
- Xudong Zhou
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, China
| | - Xincheng Jiang
- PowerChina Huadong Engineering Corporation Limited, Hangzhou, 311122, China
| | - Jibao Chen
- Henan Key Laboratory of Ecological Security for Water Source Region of Mid-Line of South-to-North Diversion Project of Henan Province, Nanyang, 473061, China
| | - Pengcheng Gao
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, China.
| |
Collapse
|
26
|
Zhou Y, He Y, Zhou Z, Xiao X, Wang M, Chen B. A newly isolated microalga Chlamydomonas sp. YC to efficiently remove ammonium nitrogen of rare earth elements wastewater. J Environ Manage 2022; 316:115284. [PMID: 35584596 DOI: 10.1016/j.jenvman.2022.115284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Revised: 04/26/2022] [Accepted: 05/08/2022] [Indexed: 06/15/2023]
Abstract
The aim of this study was to establish a practical approach to remove ammonium nitrogen of rare earth elements (REEs) wastewater by an indigenous photoautotrophic microalga. Firstly, a new microalgal strain was successfully isolated from REEs wastewater and identified as Chlamydomonas sp. (named Chlamydomonas sp. YC). The obtained results showed that microalga could completely remove the NH4+-N of 10% REEs wastewater after 10 days of cultivation; however, the highest NH4+-N removal rate was attained by microalga to treat undiluted REEs wastewater. Then, three cultivation modes including batch, semi-continuous and continuous cultivation methods were developed to evaluate the ability of NH4+-N removal rate by this microalga to treat diluted (10%) and undiluted REEs wastewater. It was found that, Chlamydomonas sp. YC exhibited superior performance towards NH4+-N removal rates (32.75-61.05 mg/(L·d)) by semi-continuous and continuous processes for the treatments of 10% and undiluted REEs wastewater in comparison to the results (19.50-30.38 mg/(L·d) by batch process. Interestingly, under the same treatment conditions, among the three cultivation modes, microalga exhibited the highest removal rates of NH4+-N in undiluted REEs wastewater by semi-continuous (61.05 mg/(L·d)) and continuous (57.10 mg/(L·d) processes. In term of the biochemical analysis, microalgal biomass obtained from the wastewater treatment had 35.40-44.40% carbohydrate and 4.97-6.03% lipid, which could be potential ingredients for sustainable biofuels production. And the highest carbohydrate and lipid productivities attained by Chlamydomonas sp. YC in the continuous mode were 226.36 mg/(L·d) and 32.98 mg/(L·d), respectively. Taken together, the established processes mediated with Chlamydomonas sp. YC via continuous cultivation was the great promising approaches to efficiently remove NH4+-N of REEs wastewater and produce valuable biomass for sustainable and renewable biofuels in a simultaneous manner.
Collapse
Affiliation(s)
- Youcai Zhou
- College of Life Science, Fujian Normal University, Fuzhou, 350117, China
| | - Yongjin He
- College of Life Science, Fujian Normal University, Fuzhou, 350117, China; Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou, 350117, China
| | - Zhihua Zhou
- College of Life Science, Fujian Normal University, Fuzhou, 350117, China
| | - Xuehua Xiao
- College of Life Science, Fujian Normal University, Fuzhou, 350117, China
| | - Mingzi Wang
- College of Life Science, Fujian Normal University, Fuzhou, 350117, China; Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou, 350117, China
| | - Bilian Chen
- College of Life Science, Fujian Normal University, Fuzhou, 350117, China; Engineering Research Center of Industrial Microbiology, Ministry of Education, Fujian Normal University, Fuzhou, 350117, China.
| |
Collapse
|
27
|
Hui C, Schmollinger S, Strenkert D, Holbrook K, Montgomery HR, Chen S, Nelson HM, Weber PK, Merchant SS. Simple steps to enable reproducibility: culture conditions affecting Chlamydomonas growth and elemental composition. Plant J 2022; 111:995-1014. [PMID: 35699388 DOI: 10.1111/tpj.15867] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 06/01/2022] [Accepted: 06/03/2022] [Indexed: 05/26/2023]
Abstract
Even subtle modifications in growth conditions elicit acclimation responses affecting the molecular and elemental makeup of organisms, both in the laboratory and in natural habitats. We systematically explored the effect of temperature, pH, nutrient availability, culture density, and access to CO2 and O2 in laboratory-grown algal cultures on growth rate, the ionome, and the ability to accumulate Fe. We found algal cells accumulate Fe in alkaline conditions, even more so when excess Fe is present, coinciding with a reduced growth rate. Using a combination of Fe-specific dyes, X-ray fluorescence microscopy, and NanoSIMS, we show that the alkaline-accumulated Fe was intracellularly sequestered into acidocalcisomes, which are localized towards the periphery of the cells. At high photon flux densities, Zn and Ca specifically over-accumulate, while Zn alone accumulates at low temperatures. The impact of aeration was probed by reducing shaking speeds and changing vessel fill levels; the former increased the Cu quota of cultures, the latter resulted in a reduction in P, Ca, and Mn at low fill levels. Trace element quotas were also affected in the stationary phase, where specifically Fe, Cu, and Zn accumulate. Cu accumulation here depends inversely on the Fe concentration of the medium. Individual laboratory strains accumulate Ca, P, and Cu to different levels. All together, we identified a set of specific changes to growth rate, elemental composition, and the capacity to store Fe in response to subtle differences in culturing conditions of Chlamydomonas, affecting experimental reproducibility. Accordingly, we recommend that these variables be recorded and reported as associated metadata.
Collapse
Affiliation(s)
- Colleen Hui
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
- Chemical Sciences Division, Lawrence Livermore National Laboratory, Livermore, CA, 94550, USA
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, 94720, USA
| | - Stefan Schmollinger
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, 94720, USA
| | - Daniela Strenkert
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, 94720, USA
| | - Kristen Holbrook
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
| | - Hayden R Montgomery
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
| | - Si Chen
- Advanced Photon Source, Argonne National Laboratory, Argonne, IL, 60439, USA
| | - Hosea M Nelson
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
| | - Peter K Weber
- Lawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA, 94550, USA
| | - Sabeeha S Merchant
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, 90095, USA
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, 94720, USA
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| |
Collapse
|
28
|
Choi BY, Shim D, Kong F, Auroy P, Lee Y, Li-Beisson Y, Lee Y, Yamaoka Y. The Chlamydomonas transcription factor MYB1 mediates lipid accumulation under nitrogen depletion. New Phytol 2022; 235:595-610. [PMID: 35383411 DOI: 10.1111/nph.18141] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/29/2022] [Indexed: 06/14/2023]
Abstract
Microalgae accumulate high levels of oil under stress, but the underlying biosynthetic pathways are not fully understood. We sought to identify key regulators of lipid metabolism under stress conditions. We found that the Chlamydomonas reinhardtii gene encoding the MYB-type transcription factor MYB1 is highly induced under stress conditions. Two myb1 mutants accumulated less total fatty acids and storage lipids than their parental strain upon nitrogen (N) depletion. Transcriptome analysis revealed that genes involved in lipid metabolism are highly enriched in the wild-type but not in the myb1-1 mutant after 4 h of N depletion. Among these genes were several involved in the transport of fatty acids from the chloroplast to the endoplasmic reticulum (ER): acyl-ACP thioesterase (FAT1), Fatty Acid EXporters (FAX1, FAX2), and long-chain acyl-CoA synthetase1 (LACS1). Furthermore, overexpression of FAT1 in the chloroplast increased lipid production. These results suggest that, upon N depletion, MYB1 promotes lipid accumulation by facilitating fatty acid transport from the chloroplast to the ER. This study identifies MYB1 as an important positive regulator of lipid accumulation in C. reinhardtii upon N depletion, adding another player to the established regulators of this process, including NITROGEN RESPONSE REGULATOR 1 (NRR1) and TRIACYLGLYCEROL ACCUMULATION REGULATOR 1 (TAR1).
Collapse
Affiliation(s)
- Bae Young Choi
- Department of Life Science, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Korea
| | - Donghwan Shim
- Department of Biological Sciences, Chungnam National University, Daejeon, 34134, Korea
| | - Fantao Kong
- Department of Life Science, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Korea
- School of Bioengineering, Dalian University of Technology, Dalian, 116024, China
| | - Pascaline Auroy
- CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, Aix Marseille Université, CEA Cadarache, Saint Paul-Lez-Durance, 13108, France
| | - Yuree Lee
- School of Biological Sciences, Seoul National University, Seoul, 08826, Korea
- Research Center for Plant Plasticity, Seoul National University, Seoul, 08826, Korea
- Plant Genomics and Breeding Institute, Seoul National University, Seoul, 08826, Korea
| | - Yonghua Li-Beisson
- CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, Aix Marseille Université, CEA Cadarache, Saint Paul-Lez-Durance, 13108, France
| | - Youngsook Lee
- Department of Life Science, Pohang University of Science and Technology (POSTECH), Pohang, 37673, Korea
| | - Yasuyo Yamaoka
- Division of Biotechnology, The Catholic University of Korea, Bucheon, 420-743, Korea
| |
Collapse
|
29
|
Tazi K, Jamai L, Seddouk L, Ettayebi M, Mohammed AM, Aleya L, Idrissi AJ. Improving carbohydrate accumulation in Chlamydomonas debaryana induced by sulfur starvation using response surface methodology. Environ Sci Pollut Res Int 2022; 29:23949-23962. [PMID: 34817813 DOI: 10.1007/s11356-021-17583-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 11/13/2021] [Indexed: 06/13/2023]
Abstract
Most methods that promote carbohydrate production negatively affect cell growth and microalgal biomass production. This study explores, in a two-stage cultivation strategy, in Chlamydomonas debaryana the optimization of certain culture conditions for high carbohydrate production without loss of biomass. In the first stage, the interaction between sodium bicarbonate supplementation, aeration, and different growth periods was optimized using the response surface methodology (RMS). The 3-factor Box-Behnken design (BBD) was applied, and a second-order polynomial regression analysis was used to analyze the experimental data. The results showed that 0.45 g L-1 of sodium bicarbonate combined with a good aerated agitation (0.6 L min-1) and a cultivation period of 18 days are optimal to produce 5.02 g L-1 of biomass containing 43% of carbohydrates.Under these optimized growth conditions, accumulation of carbohydrates was studied using different modes of nutritional stress. The results indicated that carbohydrate content was improved and the maximum accumulation (about 60% of the dry weight) was recorded under sulfur starvation with only a 14% reduction in biomass as compared to control. This study showed promising results as to biomass production and carbohydrate yield by the microalgae C. debaryana in view of production of third-generation biofuels.
Collapse
Affiliation(s)
- Karima Tazi
- Laboratory of Biotechnology, Conservation and Valorization of Natural Resources, Faculty of Sciences DM, Sidi Mohammed Ben Abdellah, University of Fez, P.O. Box 1796, Atlas-Fez, Morocco
| | - Latifa Jamai
- Biodiversity-Bioenergy-Environment (BBE) Research Group, Faculty of Sciences, SMBA University of Fez, Fez, Morocco
| | - Loubna Seddouk
- Laboratory of Biotechnology, Conservation and Valorization of Natural Resources, Faculty of Sciences DM, Sidi Mohammed Ben Abdellah, University of Fez, P.O. Box 1796, Atlas-Fez, Morocco
| | - Mohamed Ettayebi
- Biodiversity-Bioenergy-Environment (BBE) Research Group, Faculty of Sciences, SMBA University of Fez, Fez, Morocco
| | - Alaoui-Mhamdi Mohammed
- Laboratory of Biotechnology, Conservation and Valorization of Natural Resources, Faculty of Sciences DM, Sidi Mohammed Ben Abdellah, University of Fez, P.O. Box 1796, Atlas-Fez, Morocco
- Biodiversity-Bioenergy-Environment (BBE) Research Group, Faculty of Sciences, SMBA University of Fez, Fez, Morocco
| | - Lotfi Aleya
- CNRS 6249-Université de Franche-Comté, 16, route de Gray, F-25030, Besançon cedex, France.
| | - Abdellatif Janati Idrissi
- Laboratory of Biotechnology, Conservation and Valorization of Natural Resources, Faculty of Sciences DM, Sidi Mohammed Ben Abdellah, University of Fez, P.O. Box 1796, Atlas-Fez, Morocco
| |
Collapse
|
30
|
Seoane R, Santaeufemia S, Abalde J, Torres E. Efficient Removal of Methylene Blue Using Living Biomass of the Microalga Chlamydomonas moewusii: Kinetics and Equilibrium Studies. Int J Environ Res Public Health 2022; 19:ijerph19052653. [PMID: 35270343 PMCID: PMC8909845 DOI: 10.3390/ijerph19052653] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 02/22/2022] [Accepted: 02/23/2022] [Indexed: 12/24/2022]
Abstract
The efficiency of the living biomass of the microalga Chlamydomonas moewusii in removing methylene blue dye is determined. The kinetics, equilibrium isotherms, and the effects on this process of the pH, contact time, and initial concentration of the dye are studied. Fourier transform infrared spectrometry and point of zero charge are used to characterize the biomass and explore the process. The maximum removal capacity derived from the Langmuir isotherm is 212.41 ± 4.55 mg/g after 7 h of contact time at pH 7. The removal process is rapid because kinetic studies revealed that the best fit of the data is with pseudo-third-order kinetics. The removal efficiency is dependent on the pH; as the pH increased, the efficiency is higher. These results show that the living biomass of this microalga is a very efficient biosorbent and therefore very suitable for the removal of methylene blue from aqueous solutions.
Collapse
|
31
|
Bai F, Yu L, Shi J, Li-Beisson Y, Liu J. Long-chain acyl-CoA synthetases activate fatty acids for lipid synthesis, remodeling and energy production in Chlamydomonas. New Phytol 2022; 233:823-837. [PMID: 34665469 DOI: 10.1111/nph.17813] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
Long-chain acyl-CoA synthetases (LACSs) play many roles in mammals, yeasts and plants, but knowledge on their functions in microalgae remains fragmented. Here via genetic, biochemical and physiological analyses, we unraveled the function and roles of LACSs in the model microalga Chlamydomonas reinhardtii. In vitro assays on purified recombinant proteins revealed that CrLACS1, CrLACS2 and CrLACS3 all exhibited bona fide LACS activities toward a broad range of free fatty acids. The Chlamydomonas mutants compromised in CrLACS1, CrLACS2 or CrLACS3 did not show any obvious phenotypes in lipid content or growth under nitrogen (N)-replete condition. But under N-deprivation, CrLACS1 or CrLACS2 suppression resulted in c. 50% less oil, yet with a higher amount of chloroplast lipids. By contrast, CrLACS3 suppression impaired oil remobilization and cell growth severely during N-recovery, supporting its role in fatty acid β-oxidation to provide energy and carbon sources for regrowth. Transcriptomics analysis suggested that the observed lipid phenotypes are likely not due to transcriptional reprogramming but rather a shift in metabolic adjustment. Taken together, this study provided solid experimental evidence for essential roles of the three Chlamydomonas LACS enzymes in lipid synthesis, remodeling and catabolism, and highlighted the importance of lipid homeostasis in cell growth under nutrient fluctuations.
Collapse
Affiliation(s)
- Fan Bai
- Laboratory for Algae Biotechnology and Innovation, College of Engineering, Peking University, Beijing, 100871, China
| | - Lihua Yu
- Laboratory for Algae Biotechnology and Innovation, College of Engineering, Peking University, Beijing, 100871, China
| | - Jianan Shi
- Laboratory for Algae Biotechnology and Innovation, College of Engineering, Peking University, Beijing, 100871, China
| | - Yonghua Li-Beisson
- CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Aix Marseille Université, Saint Paul-Lez-Durance, 13108, France
| | - Jin Liu
- Laboratory for Algae Biotechnology and Innovation, College of Engineering, Peking University, Beijing, 100871, China
| |
Collapse
|
32
|
Crespo JL, Pérez-Pérez ME. Monitoring of ATG4 Protease Activity During Autophagy in the Model Microalga Chlamydomonas reinhardtii. Methods Mol Biol 2022; 2447:205-220. [PMID: 35583784 DOI: 10.1007/978-1-0716-2079-3_17] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Deciphering the molecular mechanisms underlying the regulation of the ATG4 protease is essential to understand the regulation of ATG8 lipidation, a key step in the biogenesis of the autophagosome and hence in autophagy progression. Here, we describe two complementary approaches to monitor ATG4 proteolytic activity in the model green alga Chlamydomonas reinhardtii: an in vitro assay using recombinant ATG4 and recombinant ATG8 as substrate, and a cell-free assay using soluble total protein extract from Chlamydomonas and recombinant Chlamydomonas ATG8 as substrate. Both assays are followed by non-reducing SDS-PAGE and immuno-blot analysis. Given the high evolutionary conservation of the ATG8 maturation process, these assays have also been validated to monitor ATG4 activity in yeast using Chlamydomonas ATG8 as substrate.
Collapse
Affiliation(s)
- José L Crespo
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Sevilla, Spain
| | - M Esther Pérez-Pérez
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Sevilla, Spain.
| |
Collapse
|
33
|
Couso I, Smythers AL, Ford MM, Umen JG, Crespo JL, Hicks LM. Inositol polyphosphates and target of rapamycin kinase signalling govern photosystem II protein phosphorylation and photosynthetic function under light stress in Chlamydomonas. New Phytol 2021; 232:2011-2025. [PMID: 34529857 DOI: 10.1111/nph.17741] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Accepted: 09/09/2021] [Indexed: 05/28/2023]
Abstract
Stress and nutrient availability influence cell proliferation through complex intracellular signalling networks. In a previous study it was found that pyro-inositol polyphosphates (InsP7 and InsP8 ) produced by VIP1 kinase, and target of rapamycin (TOR) kinase signalling interacted synergistically to control cell growth and lipid metabolism in the green alga Chlamydomonas reinhardtii. However, the relationship between InsPs and TOR was not completely elucidated. We used an in vivo assay for TOR activity together with global proteomic and phosphoproteomic analyses to assess differences between wild-type and vip1-1 in the presence and absence of rapamycin. We found that TOR signalling is more severely affected by the inhibitor rapamycin in a vip1-1 mutant compared with wild-type, indicating that InsP7 and InsP8 produced by VIP1 act independently but also coordinately with TOR. Additionally, among hundreds of differentially phosphorylated peptides detected, an enrichment for photosynthesis-related proteins was observed, particularly photosystem II proteins. The significance of these results was underscored by the finding that vip1-1 strains show multiple defects in photosynthetic physiology that were exacerbated under high light conditions. These results suggest a novel role for inositol pyrophosphates and TOR signalling in coordinating photosystem phosphorylation patterns in Chlamydomonas cells in response to light stress and possibly other stresses.
Collapse
Affiliation(s)
- Inmaculada Couso
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla, Avda. Américo Vespucio, 49, Sevilla, 41092, Spain
| | - Amanda L Smythers
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Megan M Ford
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - James G Umen
- Donald Danforth Plant Science Center, St Louis, MO, 63132, USA
| | - José L Crespo
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla, Avda. Américo Vespucio, 49, Sevilla, 41092, Spain
| | - Leslie M Hicks
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| |
Collapse
|
34
|
Ayele A, Suresh A, Benor S, Konwarh R. Optimization of chromium(VI) removal by indigenous microalga ( Chlamydomonas sp.)-based biosorbent using response surface methodology. Water Environ Res 2021; 93:1276-1288. [PMID: 33428305 DOI: 10.1002/wer.1510] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 12/24/2020] [Accepted: 01/04/2021] [Indexed: 05/13/2023]
Abstract
Phycoremediation of heavy metals has garnered considerable recent research interest. In this study, an indigenous microalga (Chlamydomonas sp.)-based biosorbent was employed for biosorption of Cr(VI) dissolved solids (Cr(VI)-DS), optimized using response surface methodology (RSM). The effects of microalga concentration, pH, and contact time were studied with 250 mg Cr(VI)-DS L-1 . The biosorption of Cr(VI)-DS was higher at acidic pH (94.17% at pH 4) than at alkaline conditions (68.53% at pH 10). The interaction of pH and microalga concentration exerted significant (p < 0.05) influence on the biosorption. Under the optimized parameters of 1.5 g microalga L-1 , pH 4, and contact time of 30 min, a predicted biosorption of 91.31% and biosorption capacity of 152 mg Cr(VI)-DS g-1 biomass were documented. FTIR analysis attested the electronegative surface functional groups of the microalgae biomass, bracketed together with its high biosorption potency. The study evinced the potential of the indigenous microalga for remediation of hexavalent chromium. PRACTITIONER POINTS: Indigenous Ethiopian microalga (Chlamydomonas sp.) exhibited 94% Cr(VI) abatement with biosorption capacity of 152 mg Cr(VI) g-1 . FTIR analysis of the biosorbent divulged the presence of electronegative functional groups (amino, carboxyl, hydroxyl, and carbonyl groups). Higher biosorption of Cr(VI)-DS under acidic pH (94.17% at pH 4) than alkaline pH (68.53% at pH 10). Significant (p < 0.05) interaction effect of pH and biomass concentration on the biosorption, evinced in RSM optimization 91% Cr(VI) removal achieved under optimal conditions of 1.5 g biosorbent L-1 , 30 min of contact time, and pH 4.
Collapse
Affiliation(s)
- Abate Ayele
- Department of Biotechnology, College of Biological and Chemical Engineering, Addis Ababa Science and Technology University, Addis Ababa, Ethiopia
| | - Arumuganainar Suresh
- Department of Biotechnology, College of Biological and Chemical Engineering, Addis Ababa Science and Technology University, Addis Ababa, Ethiopia
- Department of Biological Sciences and Biotechnology, Institute of Advanced Research - The University for Innovation, Gandhinagar, India
| | - Solomon Benor
- Department of Biotechnology, College of Biological and Chemical Engineering, Addis Ababa Science and Technology University, Addis Ababa, Ethiopia
- Office of Science and Research Affair Director General, Ministry of Science and Higher Education, Addis Ababa, Ethiopia
| | - Rocktotpal Konwarh
- Department of Biotechnology, College of Biological and Chemical Engineering, Addis Ababa Science and Technology University, Addis Ababa, Ethiopia
- Centre of Excellence - Nanotechnology, Addis Ababa Science and Technology University, Addis Ababa, Ethiopia
| |
Collapse
|
35
|
Li-Beisson Y, Kong F, Wang P, Lee Y, Kang BH. The disassembly of lipid droplets in Chlamydomonas. New Phytol 2021; 231:1359-1364. [PMID: 34028037 DOI: 10.1111/nph.17505] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 05/07/2021] [Indexed: 06/12/2023]
Abstract
Lipid droplets (LDs) are ubiquitous and specialized organelles in eukaryotic cells. Consisting of a triacylglycerol core surrounded by a monolayer of membrane lipids, LDs are decorated with proteins and have myriad functions, from carbon/energy storage to membrane lipid remodeling and signal transduction. The biogenesis and turnover of LDs are therefore tightly coordinated with cellular metabolic needs in a fluctuating environment. Lipid droplet turnover requires remodeling of the protein coat, lipolysis, autophagy and fatty acid β-oxidation. Several key components of these processes have been identified in Chlamydomonas (Chlamydomonas reinhardtii), including the major lipid droplet protein, a CXC-domain containing regulatory protein, the phosphatidylethanolamine-binding DTH1 (DELAYED IN TAG HYDROLYSIS1), two lipases and two enzymes involved in fatty acid β-oxidation. Here, we review LD turnover and discuss its physiological significance in Chlamydomonas, a major model green microalga in research on algal oil.
Collapse
Affiliation(s)
- Yonghua Li-Beisson
- CEA, CNRS, BIAM, Institut de Biosciences et Biotechnologies Aix-Marseille, CEA Cadarache, Aix-Marseille Univ, Saint Paul-Lez-Durance, 13108, France
| | - Fantao Kong
- School of Bioengineering, Dalian University of Technology, Dalian, 116024, China
| | - Pengfei Wang
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, 999077, China
| | - Youngsook Lee
- Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, 37673, Korea
| | - Byung-Ho Kang
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, 999077, China
| |
Collapse
|
36
|
Chen G, Zhu N, Hu Z, Liu L, Wang GQ, Wang G. Motility changes rather than EPS production shape aggregation of Chlamydomonas microsphaera in aquatic environment. Environ Technol 2021; 42:2916-2924. [PMID: 31951776 DOI: 10.1080/09593330.2020.1718216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Accepted: 01/11/2020] [Indexed: 06/10/2023]
Abstract
Microalgal aggregation is a key for both microalgae harvesting and water purification, where changes in extracellular polymeric substance (EPS) secretion and cell motility changes are of core importance. In this study, we investigated the aggregation process of Chlamydomonas microsphaera confronting resource limitation and chlorine disinfection, and tried to compare changes in the magnitude of EPS secretion and cell motility. Results show that the presence of mild chlorine solution (0.20%) dose stimulated microalgal aggregation (with an aggregated to planktonic cells ratio of 3.2), with extracellular protein concentration and mean cell velocity reaching a maximum of 43.43 ± 0.01 mg/L and 201 ± 35 µm/s, respectively. These values are 71% and 191% higher than those of the control. Comparably, nutrient availability had only a limited impact on microalgal aggregation and was associated with mild EPS secretion and cell motility. Correlation analysis revealed a strong positive impact of cell motility (mean velocity) on microalgae aggregation, with little effect on EPS excretion. Together, these quantitative estimations may shed light on understanding the mechanisms of microalgae aggregation in aqueous systems, which could help future design and practical operation of source water pretreatment or microalgae harvesting.
Collapse
Affiliation(s)
- Guowei Chen
- State Key Laboratory of Hydrology-Water Resources and Hydraulic Engineering, Hohai University, Nanjing, People's Republic of China
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Ning Zhu
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Zhen Hu
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Li Liu
- Department of Civil Engineering, Hefei University of Technology, Hefei, People's Republic of China
| | - Guo-Qing Wang
- Nanjing Hydraulic Research Institute, Nanjing, People's Republic of China
| | - Gang Wang
- Department of Soil and Water Sciences, China Agricultural University, Beijing, People's Republic of China
| |
Collapse
|
37
|
Santhanagopalan I, Wong R, Mathur T, Griffiths H. Orchestral manoeuvres in the light: crosstalk needed for regulation of the Chlamydomonas carbon concentration mechanism. J Exp Bot 2021; 72:4604-4624. [PMID: 33893473 PMCID: PMC8320531 DOI: 10.1093/jxb/erab169] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 04/19/2021] [Indexed: 05/19/2023]
Abstract
The inducible carbon concentration mechanism (CCM) in Chlamydomonas reinhardtii has been well defined from a molecular and ultrastructural perspective. Inorganic carbon transport proteins, and strategically located carbonic anhydrases deliver CO2 within the chloroplast pyrenoid matrix where Rubisco is packaged. However, there is little understanding of the fundamental signalling and sensing processes leading to CCM induction. While external CO2 limitation has been believed to be the primary cue, the coupling between energetic supply and inorganic carbon demand through regulatory feedback from light harvesting and photorespiration signals could provide the original CCM trigger. Key questions regarding the integration of these processes are addressed in this review. We consider how the chloroplast functions as a crucible for photosynthesis, importing and integrating nuclear-encoded components from the cytoplasm, and sending retrograde signals to the nucleus to regulate CCM induction. We hypothesize that induction of the CCM is associated with retrograde signals associated with photorespiration and/or light stress. We have also examined the significance of common evolutionary pressures for origins of two co-regulated processes, namely the CCM and photorespiration, in addition to identifying genes of interest involved in transcription, protein folding, and regulatory processes which are needed to fully understand the processes leading to CCM induction.
Collapse
Affiliation(s)
- Indu Santhanagopalan
- Department of Plant Sciences, Downing Street, University of Cambridge, Cambridge, UK
| | - Rachel Wong
- Department of Plant Sciences, Downing Street, University of Cambridge, Cambridge, UK
| | - Tanya Mathur
- Department of Plant Sciences, Downing Street, University of Cambridge, Cambridge, UK
| | | |
Collapse
|
38
|
Hou Y, Zhao L, Kubo T, Cheng X, McNeill N, Oda T, Witman GB. Chlamydomonas FAP70 is a component of the previously uncharacterized ciliary central apparatus projection C2a. J Cell Sci 2021; 134:jcs258540. [PMID: 33988244 PMCID: PMC8272932 DOI: 10.1242/jcs.258540] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 04/23/2021] [Indexed: 12/12/2022] Open
Abstract
Cilia are essential organelles required for cell signaling and motility. Nearly all motile cilia have a '9+2' axoneme composed of nine outer doublet microtubules plus two central microtubules; the central microtubules together with their projections are termed the central apparatus (CA). In Chlamydomonas reinhardtii, a model organism for studying cilia, 30 proteins are known CA components, and ∼36 more are predicted to be CA proteins. Among the candidate CA proteins is the highly conserved FAP70 (CFAP70 in humans), which also has been reported to be associated with the doublet microtubules. Here, we determined by super-resolution structured illumination microscopy that FAP70 is located exclusively in the CA, and show by cryo-electron microscopy that its N-terminus is located at the base of the C2a projection of the CA. We also found that fap70-1 mutant axonemes lack most of the C2a projection. Mass spectrometry revealed that fap70-1 axonemes lack not only FAP70 but two other conserved candidate CA proteins, FAP65 (CFAP65 in humans) and FAP147 (MYCBPAP in humans). Finally, FAP65 and FAP147 co-immunoprecipitated with HA-tagged FAP70. Taken together, these data identify FAP70, FAP65 and FAP147 as the first defining components of the C2a projection.
Collapse
Affiliation(s)
- Yuqing Hou
- Division of Cell Biology and Imaging, Department of Radiology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655, USA
| | - Lei Zhao
- Division of Cell Biology and Imaging, Department of Radiology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655, USA
| | - Tomohiro Kubo
- Department of Anatomy and Structural Biology, Graduate School of Medicine, University of Yamanashi, Chuo, Yamanashi 409-3898, Japan
| | - Xi Cheng
- Division of Cell Biology and Imaging, Department of Radiology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655, USA
| | - Nathan McNeill
- Division of Cell Biology and Imaging, Department of Radiology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655, USA
| | - Toshiyuki Oda
- Department of Anatomy and Structural Biology, Graduate School of Medicine, University of Yamanashi, Chuo, Yamanashi 409-3898, Japan
| | - George B. Witman
- Division of Cell Biology and Imaging, Department of Radiology, University of Massachusetts Medical School, Worcester, Massachusetts, 01655, USA
| |
Collapse
|
39
|
Nobori T. Single-cell genomics goes greener. Plant Cell 2021; 33:792-793. [PMID: 35234972 PMCID: PMC8226280 DOI: 10.1093/plcell/koab036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Accepted: 01/22/2021] [Indexed: 06/14/2023]
Affiliation(s)
- Tatsuya Nobori
- Plant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, San Diego, California 92037
| |
Collapse
|
40
|
Théry A, Wang Y, Dvoriashyna M, Eloy C, Elias F, Lauga E. Rebound and scattering of motile Chlamydomonas algae in confined chambers. Soft Matter 2021; 17:4857-4873. [PMID: 33890590 PMCID: PMC8115209 DOI: 10.1039/d0sm02207a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Motivated by recent experiments demonstrating that motile algae get trapped in draining foams, we study the trajectories of microorganisms confined in model foam channels (section of a Plateau border). We track single Chlamydomonas reinhardtii cells confined in a thin three-circle microfluidic chamber and show that their spatial distribution exhibits strong corner accumulation. Using empirical scattering laws observed in previous experiments (scattering with a constant scattering angle), we next develop a two-dimension geometrical model and compute the phase space of trapped and periodic trajectories of swimmers inside a three-circles billiard. We find that the majority of cell trajectories end up in a corner, providing a geometrical mechanism for corner accumulation. Incorporating the distribution of scattering angles observed in our experiments and including hydrodynamic interactions between the cells and the surfaces into the geometrical model enables us to reproduce the experimental probability density function of micro-swimmers in microfluidic chambers. Both our experiments and models demonstrate therefore that motility leads generically to trapping in complex geometries.
Collapse
Affiliation(s)
- Albane Théry
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK.
| | - Yuxuan Wang
- Université de Paris, CNRS UMR 7057, Laboratoire Matière et Systèmes Complexes MSC, F-75006 Paris, France
| | - Mariia Dvoriashyna
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK.
| | - Christophe Eloy
- Aix Marseille Univ., CNRS, Centrale Marseille, IRPHE, 13013 Marseille, France
| | - Florence Elias
- Université de Paris, CNRS UMR 7057, Laboratoire Matière et Systèmes Complexes MSC, F-75006 Paris, France
| | - Eric Lauga
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, UK.
| |
Collapse
|
41
|
Goli Pozveh S, Bae AJ, Gholami A. Resistive force theory and wave dynamics in swimming flagellar apparatus isolated from C. reinhardtii. Soft Matter 2021; 17:1601-1613. [PMID: 33355581 PMCID: PMC8323821 DOI: 10.1039/d0sm01969k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 12/08/2020] [Indexed: 06/12/2023]
Abstract
Cilia-driven motility and fluid transport are ubiquitous in nature and essential for many biological processes, including swimming of eukaryotic unicellular organisms, mucus transport in airway apparatus or fluid flow in the brain. The-biflagellated micro-swimmer Chlamydomonas reinhardtii is a model organism to study the dynamics of flagellar synchronization. Hydrodynamic interactions, intracellular mechanical coupling or cell body rocking is believed to play a crucial role in the synchronization of flagellar beating in green algae. Here, we use freely swimming intact flagellar apparatus isolated from a wall-less strain of Chlamydomonas to investigate wave dynamics. Our analysis on phase coordinates shows that when the frequency difference between the flagella is high (10-41% of the mean), neither mechanical coupling via basal body nor hydrodynamics interactions are strong enough to synchronize two flagella, indicating that the beating frequency is perhaps controlled internally by the cell. We also examined the validity of resistive force theory for a flagellar apparatus swimming freely in the vicinity of a substrate and found quantitative agreement between the experimental data and simulations with a drag anisotropy of ratio 2. Finally, using a simplified wave form, we investigated the influence of phase and frequency differences, intrinsic curvature and wave amplitude on the swimming trajectory of flagellar apparatus. Our analysis shows that by controlling the phase or frequency differences between two flagella, steering can occur.
Collapse
Affiliation(s)
- Samira Goli Pozveh
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.
| | - Albert J Bae
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.
| | - Azam Gholami
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.
| |
Collapse
|
42
|
Carrasco Flores D, Fricke M, Wesp V, Desirò D, Kniewasser A, Hölzer M, Marz M, Mittag M. A marine Chlamydomonas sp. emerging as an algal model. J Phycol 2021; 57:54-69. [PMID: 33043442 DOI: 10.1111/jpy.13083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 08/25/2020] [Accepted: 08/26/2020] [Indexed: 06/11/2023]
Abstract
The freshwater microalga Chlamydomonas reinhardtii, which lives in wet soil, has served for decades as a model for numerous biological processes, and many tools have been introduced for this organism. Here, we have established a stable nuclear transformation for its marine counterpart, Chlamydomonas sp. SAG25.89, by fusing specific cis-acting elements from its Actin gene with the gene providing hygromycin resistance and using an elaborated electroporation protocol. Like C. reinhardtii, Chlamydomonas sp. has a high GC content, allowing reporter genes and selection markers to be applicable in both organisms. Chlamydomonas sp. grows purely photoautotrophically and requires ammonia as a nitrogen source because its nuclear genome lacks some of the genes required for nitrogen metabolism. Interestingly, it can grow well under both low and very high salinities (up to 50 g · L-1 ) rendering it as a model for osmotolerance. We further show that Chlamydomonas sp. grows well from 15 to 28°C, but halts its growth at 32°C. The genome of Chlamydomonas sp. contains some gene homologs the expression of which is regulated according to the ambient temperatures and/or confer thermal acclimation in C. reinhardtii. Thus, knowledge of temperature acclimation can now be compared to the marine species. Furthermore, Chlamydomonas sp. can serve as a model for studying marine microbial interactions and for comparing mechanisms in freshwater and marine environments. Chlamydomonas sp. was previously shown to be immobilized rapidly by a cyclic lipopeptide secreted from the antagonistic bacterium Pseudomonas protegens PF-5, which deflagellates C. reinhardtii.
Collapse
Affiliation(s)
- David Carrasco Flores
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, 07743, Germany
| | - Markus Fricke
- RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University, Jena, 07743, Germany
| | - Valentin Wesp
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, 07743, Germany
| | - Daniel Desirò
- RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University, Jena, 07743, Germany
| | - Anja Kniewasser
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, 07743, Germany
| | - Martin Hölzer
- RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University, Jena, 07743, Germany
| | - Manja Marz
- RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University, Jena, 07743, Germany
- FLI, Leibniz Institute for Age Research, Beutenbergstr. 11, Jena, 07745, Germany
| | - Maria Mittag
- Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich Schiller University, Jena, 07743, Germany
| |
Collapse
|
43
|
Xie P, Ho SH, Xiao QY, Xu XJ, Zhao L, Zhou X, Lee DJ, Ren NQ, Chen C. Revealing the role of nitrate on sulfide removal coupled with bioenergy production in Chlamydomonas sp. Tai-03: Metabolic pathways and mechanisms. J Hazard Mater 2020; 399:123115. [PMID: 32937723 DOI: 10.1016/j.jhazmat.2020.123115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 05/23/2020] [Accepted: 06/02/2020] [Indexed: 06/11/2023]
Abstract
Recently, simultaneous sulfide removal and bioenergy production by microalgal treatment have attracted growing attention. However, the response of nitrogen metabolism to the sulfide-removal process has yet to be explored. Here, variable levels of sulfide could be completely removed by Chlamydomonas sp. Tai-03 under both high and low nitrate conditions in synthetic wastewaters. The highest sulfide removal rate of 5.56 mg-S L-1 h-1 was achieved with the addition of 100 mg L-1 sulfide in the presence of high nitrate. Meanwhile, sulfide was chemically oxidized to sulfate and then ingested by microalgae. Interestingly, sulfide-removal efficiency critically depended on nitrate concentration. Sulfide can also enhance the ability of microalgae to assimilate nitrogen. Based on the analysis of sulfur- and nitrogen-related metabolic profiling, serine as a precursor decreased by 94 % under low levels of nitrate, which induced the significant inhibition of cysteine and methionine biosynthesis. The results indicated that nitrogen source played a critical role in the sulfur cycle because of the positive relationship between the aforementioned metabolic processes and nitrate concentration. Additionally, sulfide can improve lipid and carbohydrate productivity under high levels of nitrate. This study enhances our understanding of the mechanisms underlying the simultaneous removal of sulfide and alternative bioenergy production.
Collapse
Affiliation(s)
- Peng Xie
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Shih-Hsin Ho
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Qing-Yang Xiao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Xi-Jun Xu
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Lei Zhao
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Xu Zhou
- Engineering Laboratory of Microalgal Bioenergy, Shenzhen Graduate School, Harbin Institute of Technology, Shenzhen, 518055, China
| | - Duu-Jong Lee
- Department of Chemical Engineering, National Taiwan University, Taipei 106, Taiwan; Department of Chemical Engineering, National Taiwan University of Science and Technology, Taipei 106, Taiwan
| | - Nan-Qi Ren
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China
| | - Chuan Chen
- State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, HeiLongjiang Province 150090, China.
| |
Collapse
|
44
|
Klassen V, Blifernez-Klassen O, Bax J, Kruse O. Wastewater-borne microalga Chlamydomonas sp.: A robust chassis for efficient biomass and biomethane production applying low-N cultivation strategy. Bioresour Technol 2020; 315:123825. [PMID: 32693344 DOI: 10.1016/j.biortech.2020.123825] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 07/06/2020] [Accepted: 07/08/2020] [Indexed: 05/16/2023]
Abstract
Biogas/biomethane generation from microalgae biomass via anaerobic fermentation is increasingly gaining attention as CO2-neutral energy source. Intensive research has shown, however, that microalgae represent a rather challenging substrate for anaerobic digestion (AD) due to their high cell wall recalcitrance and unfavourable protein content. Previously, the utilization of nitrogen-limited (low-N) microalgal biomass for continuous AD-processes was demonstrated (as proof-of-concept) with remarkable biomethane productivity. The present study shows the efficient portability of the low-N cultivation/fermentation strategy on a robust, wastewater-borne microalga isolate that tolerates high temperature and light conditions and can perfectly cope with microbial contaminations. Continuous long-term anaerobic digestion was characterized by stable and efficient specific biogas and biomethane productivity (765 ± 20 and 478 ± 15 mLNg-1 volatile solids (VS) d-1, respectively), equivalent to volumetric methane productivity of 1912 mLN L-1d-1. The present work underlines the applicability of low-N-biomass of wastewater-borne, robust microalgae as mono-substrate for highly efficient continuous methane generation.
Collapse
Affiliation(s)
- Viktor Klassen
- Algenbiotechnology and Bioenergy, Bielefeld University, Faculty of Biology, Center for Biotechnology (CeBiTec), Universitätsstrasse 27, 33615 Bielefeld, Germany.
| | - Olga Blifernez-Klassen
- Algenbiotechnology and Bioenergy, Bielefeld University, Faculty of Biology, Center for Biotechnology (CeBiTec), Universitätsstrasse 27, 33615 Bielefeld, Germany
| | - Jördis Bax
- Algenbiotechnology and Bioenergy, Bielefeld University, Faculty of Biology, Center for Biotechnology (CeBiTec), Universitätsstrasse 27, 33615 Bielefeld, Germany
| | - Olaf Kruse
- Algenbiotechnology and Bioenergy, Bielefeld University, Faculty of Biology, Center for Biotechnology (CeBiTec), Universitätsstrasse 27, 33615 Bielefeld, Germany
| |
Collapse
|
45
|
Poghosyan E, Iacovache I, Faltova L, Leitner A, Yang P, Diener DR, Aebersold R, Zuber B, Ishikawa T. The structure and symmetry of the radial spoke protein complex in Chlamydomonas flagella. J Cell Sci 2020; 133:jcs245233. [PMID: 32694165 DOI: 10.1242/jcs.245233] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 06/25/2020] [Indexed: 12/27/2022] Open
Abstract
The radial spoke is a key element in a transducer apparatus controlling the motility of eukaryotic cilia. The transduction biomechanics is a long-standing question in cilia biology. The radial spoke has three regions - a spoke head, a bifurcated neck and a stalk. Although the neck and the stalk are asymmetric, twofold symmetry of the head has remained controversial. In this work we used single particle cryo-electron microscopy (cryo-EM) analysis to generate a 3D structure of the whole radial spoke at unprecedented resolution. We show the head region at 15 Å (1.5 nm) resolution and confirm twofold symmetry. Using distance constraints generated by cross-linking mass spectrometry, we locate two components, RSP2 and RSP4, at the head and neck regions. Our biophysical analysis of isolated RSP4, RSP9, and RSP10 affirmed their oligomeric state. Our results enable us to redefine the boundaries of the regions and propose a model of organization of the radial spoke component proteins.
Collapse
Affiliation(s)
- Emiliya Poghosyan
- Paul Scherrer Institute, Department of Biology and Chemistry, Forschungsstrasse 111, 5232 Villigen PSI, Switzerland
- ETH Zurich, Department of Biology, Wolfgang-Pauli-Strasse 27, 8093 Zürich, Switzerland
| | - Ioan Iacovache
- University of Bern, Institute of Anatomy, Baltzerstrasse 2, 3012 Bern, Switzerland
| | - Lenka Faltova
- Paul Scherrer Institute, Department of Biology and Chemistry, Forschungsstrasse 111, 5232 Villigen PSI, Switzerland
| | - Alexander Leitner
- ETH Zurich, Department of Biology, Institute of Molecular Systems Biology, Otto-Stern-Weg 3, 8093 Zürich, Switzerland
| | - Pinfen Yang
- Department of Biological Sciences, Marquette University, Milwaukee, WI 53233, USA
| | - Dennis R Diener
- Paul Scherrer Institute, Department of Biology and Chemistry, Forschungsstrasse 111, 5232 Villigen PSI, Switzerland
| | - Ruedi Aebersold
- ETH Zurich, Department of Biology, Institute of Molecular Systems Biology, Otto-Stern-Weg 3, 8093 Zürich, Switzerland
- University of Zurich, Faculty of Science, Rämistrasse 71, 8006 Zürich, Switzerland
| | - Benoit Zuber
- University of Bern, Institute of Anatomy, Baltzerstrasse 2, 3012 Bern, Switzerland
| | - Takashi Ishikawa
- Paul Scherrer Institute, Department of Biology and Chemistry, Forschungsstrasse 111, 5232 Villigen PSI, Switzerland
- ETH Zurich, Department of Biology, Wolfgang-Pauli-Strasse 27, 8093 Zürich, Switzerland
| |
Collapse
|
46
|
Affiliation(s)
- Magdalena Julkowska
- King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia
| |
Collapse
|
47
|
Maron L. Structure and function of an inorganic carbon transporter that captures CO 2 in green algae. Plant J 2020; 102:1105-1106. [PMID: 32557968 DOI: 10.1111/tpj.14859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
|
48
|
Amador GJ, Wei D, Tam D, Aubin-Tam ME. Fibrous Flagellar Hairs of Chlamydomonas reinhardtii Do Not Enhance Swimming. Biophys J 2020; 118:2914-2925. [PMID: 32502384 PMCID: PMC7300311 DOI: 10.1016/j.bpj.2020.05.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Revised: 04/06/2020] [Accepted: 04/27/2020] [Indexed: 01/18/2023] Open
Abstract
The flagella of Chlamydomonas reinhardtii possess fibrous ultrastructures of a nanometer-scale thickness known as mastigonemes. These structures have been widely hypothesized to enhance flagellar thrust; however, detailed hydrodynamic analysis supporting this claim is lacking. In this study, we present a comprehensive investigation into the hydrodynamic effects of mastigonemes using a genetically modified mutant lacking the fibrous structures. Through high-speed observations of freely swimming cells, we found the average and maximum swimming speeds to be unaffected by the presence of mastigonemes. In addition to swimming speeds, no significant difference was found for flagellar gait kinematics. After our observations of swimming kinematics, we present direct measurements of the hydrodynamic forces generated by flagella with and without mastigonemes. These measurements were conducted using optical tweezers, which enabled high temporal and spatial resolution of hydrodynamic forces. Through our measurements, we found no significant difference in propulsive flows due to the presence of mastigonemes. Direct comparison between measurements and fluid mechanical modeling revealed that swimming hydrodynamics were accurately captured without including mastigonemes on the modeled swimmer's flagella. Therefore, mastigonemes do not appear to increase the flagella's effective area while swimming, as previously thought. Our results refute the longstanding claim that mastigonemes enhance flagellar thrust in C. reinhardtii, and so, their function still remains enigmatic.
Collapse
Affiliation(s)
- Guillermo J Amador
- Laboratory for Aero and Hydrodynamics, Delft University of Technology, Delft, the Netherlands; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands
| | - Da Wei
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands
| | - Daniel Tam
- Laboratory for Aero and Hydrodynamics, Delft University of Technology, Delft, the Netherlands.
| | - Marie-Eve Aubin-Tam
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, the Netherlands.
| |
Collapse
|
49
|
Dell'Aglio E. Overcoming Algal Vitamin B12 Auxotrophy by Experimental Evolution. Plant Physiol 2020; 183:15-16. [PMID: 32385175 PMCID: PMC7210650 DOI: 10.1104/pp.20.00274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Affiliation(s)
- Elisa Dell'Aglio
- Institut National des Sciences Appliquées-Lyon, 69100 Villeurbanne, France
| |
Collapse
|
50
|
Behl K, SeshaCharan P, Joshi M, Sharma M, Mathur A, Kareya MS, Jutur PP, Bhatnagar A, Nigam S. Multifaceted applications of isolated microalgae Chlamydomonas sp. TRC-1 in wastewater remediation, lipid production and bioelectricity generation. Bioresour Technol 2020; 304:122993. [PMID: 32078900 DOI: 10.1016/j.biortech.2020.122993] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Revised: 02/02/2020] [Accepted: 02/07/2020] [Indexed: 06/10/2023]
Abstract
Green microalga, Chlamydomonas sp. TRC-1 (C. TRC-1), isolated from the outlet of effluent treatment plant of textile dyeing mill, was investigated for its competence towards bioremediation. Algal biomass obtained after remediation (ABAR) was implied for bioelectricity and biofuel production. C. TRC-1 could completely decolorize the effluent in 7 days. Significant reduction in pollution-indicating parameters was observed. Chronoamperometric studies were carried out using cyclic voltammetry and electrochemical impedance spectroscopy (EIS). Maximum current density, power and power density of 3.6 A m-2, 4.13 × 10-4 W and 1.83 W m-2, respectively were generated in ABAR. EIS studies showed a decrease in resistance of ABAR, supporting better electron transfer as compared to algal biomass before remediation (ABBR). Its candidature for biofuel production was assessed by estimating the total lipid content. Results revealed enhancement in lipid content from 46.85% (ABBR) to 79.1% (ABAR). Current study advocates versatile potential of isolated C. TRC-1 for bioremediation of wastewater, bioelectricity production and biofuel generation.
Collapse
Affiliation(s)
- Kannikka Behl
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh 201313, India
| | | | - Monika Joshi
- Amity Institute of Nanotechnology, Amity University, Noida, Uttar Pradesh 201313, India
| | - Mahima Sharma
- Amity Institute of Nanotechnology, Amity University, Noida, Uttar Pradesh 201313, India
| | - Ashish Mathur
- Amity Institute of Nanotechnology, Amity University, Noida, Uttar Pradesh 201313, India
| | - Mukul Suresh Kareya
- Omics of Algae Group, Integrative Biology, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
| | - Pannaga Pavan Jutur
- Omics of Algae Group, Integrative Biology, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
| | - Amit Bhatnagar
- Department of Environmental and Biological Sciences, University of Eastern Finland, P. O. Box 1627, FI-70211, Kuopio, Finland
| | - Subhasha Nigam
- Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh 201313, India.
| |
Collapse
|