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For: Richard AM, Huang R, Waidyanatha S, Shinn P, Collins BJ, Thillainadarajah I, Grulke CM, Williams AJ, Lougee RR, Judson RS, Houck KA, Shobair M, Yang C, Rathman JF, Yasgar A, Fitzpatrick SC, Simeonov A, Thomas RS, Crofton KM, Paules RS, Bucher JR, Austin CP, Kavlock RJ, Tice RR. The Tox21 10K Compound Library: Collaborative Chemistry Advancing Toxicology. Chem Res Toxicol 2021;34:189-216. [PMID: 33140634 PMCID: PMC7887805 DOI: 10.1021/acs.chemrestox.0c00264] [Citation(s) in RCA: 143] [Impact Index Per Article: 35.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Indexed: 12/13/2022]
Number Cited by Other Article(s)
1
Truong KT, Wambaugh JF, Kapraun DF, Davidson-Fritz SE, Eytcheson S, Judson RS, Paul Friedman K. Interpretation of thyroid-relevant bioactivity data for comparison to in vivo exposures: A prioritization approach for putative chemical inhibitors of in vitro deiodinase activity. Toxicology 2025;515:154157. [PMID: 40262668 DOI: 10.1016/j.tox.2025.154157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2025] [Revised: 04/16/2025] [Accepted: 04/17/2025] [Indexed: 04/24/2025]
2
Ngan DK, Sakamuru S, Zhao J, Xia M, Ferguson SS, Reif DM, Simeonov A, Huang R. Application of cytochrome P450 enzyme assays to predict p53 inducers and AChE inhibitors that require metabolic activation. Toxicol Appl Pharmacol 2025;499:117315. [PMID: 40180188 PMCID: PMC12065653 DOI: 10.1016/j.taap.2025.117315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Revised: 03/10/2025] [Accepted: 03/26/2025] [Indexed: 04/05/2025]
3
Seal S, Mahale M, García-Ortegón M, Joshi CK, Hosseini-Gerami L, Beatson A, Greenig M, Shekhar M, Patra A, Weis C, Mehrjou A, Badré A, Paisley B, Lowe R, Singh S, Shah F, Johannesson B, Williams D, Rouquie D, Clevert DA, Schwab P, Richmond N, Nicolaou CA, Gonzalez RJ, Naven R, Schramm C, Vidler LR, Mansouri K, Walters WP, Wilk DD, Spjuth O, Carpenter AE, Bender A. Machine Learning for Toxicity Prediction Using Chemical Structures: Pillars for Success in the Real World. Chem Res Toxicol 2025;38:759-807. [PMID: 40314361 DOI: 10.1021/acs.chemrestox.5c00033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2025]
4
Wang T, Jia X, Aleksunes LM, Shen H, Deng HW, Zhu H. Developmental toxicity: artificial intelligence-powered assessments. Trends Pharmacol Sci 2025:S0165-6147(25)00071-9. [PMID: 40374415 DOI: 10.1016/j.tips.2025.04.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 04/05/2025] [Accepted: 04/17/2025] [Indexed: 05/17/2025]
5
Chen D, Jiang J, Hayes N, Su Z, Wei GW. Artificial intelligence approaches for anti-addiction drug discovery. DIGITAL DISCOVERY 2025:d5dd00032g. [PMID: 40401266 PMCID: PMC12086782 DOI: 10.1039/d5dd00032g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Accepted: 05/07/2025] [Indexed: 05/28/2025]
6
Xue B, Xu Y, Huang R, Zhu Q. Novel target identification towards drug repurposing based on biological activity profiles. PLoS One 2025;20:e0319865. [PMID: 40327632 PMCID: PMC12054903 DOI: 10.1371/journal.pone.0319865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 02/09/2025] [Indexed: 05/08/2025]  Open
7
von Coburg E, Wedler M, Muino JM, Wolff C, Körber N, Dunst S, Liu S. Cell Painting PLUS: expanding the multiplexing capacity of Cell Painting-based phenotypic profiling using iterative staining-elution cycles. Nat Commun 2025;16:3857. [PMID: 40274798 PMCID: PMC12022024 DOI: 10.1038/s41467-025-58765-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Accepted: 04/02/2025] [Indexed: 04/26/2025]  Open
8
Maciag M, Karamyan VT. The Missing Enzymes: A Call to Update Pharmacological Profiling Practices for Better Drug Safety Assessment. J Med Chem 2025;68:7854-7865. [PMID: 40173276 PMCID: PMC12035801 DOI: 10.1021/acs.jmedchem.4c02228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 01/14/2025] [Accepted: 03/21/2025] [Indexed: 04/04/2025]
9
Masood MA, Kaski S, Cui T. Molecular property prediction using pretrained-BERT and Bayesian active learning: a data-efficient approach to drug design. J Cheminform 2025;17:58. [PMID: 40270038 PMCID: PMC12020163 DOI: 10.1186/s13321-025-00986-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2024] [Accepted: 03/12/2025] [Indexed: 04/25/2025]  Open
10
Jiang J, Yang Y. GymBuddy and Elomia, AI-integrated applications, effects on the mental health of the students with psychological disorders. BMC Psychol 2025;13:350. [PMID: 40200376 PMCID: PMC11980345 DOI: 10.1186/s40359-025-02640-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Accepted: 03/21/2025] [Indexed: 04/10/2025]  Open
11
Ci L, Li B, Xu J, Peng S, Jiang L, Long W. MulAFNet: Integrating Multiple Molecular Representations for Enhanced Property Prediction. ACS OMEGA 2025;10:12043-12053. [PMID: 40191315 PMCID: PMC11966294 DOI: 10.1021/acsomega.4c09884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Revised: 02/12/2025] [Accepted: 02/28/2025] [Indexed: 04/09/2025]
12
Hofmann AG, Weber B, Ibbotson S, Agibetov A. Artificial intelligence-based molecular property prediction of photosensitising effects of drugs. J Drug Target 2025;33:556-561. [PMID: 39618307 DOI: 10.1080/1061186x.2024.2434911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2024] [Revised: 11/12/2024] [Accepted: 11/17/2024] [Indexed: 01/04/2025]
13
Piergiovanni M, Mennecozzi M, Barale-Thomas E, Danovi D, Dunst S, Egan D, Fassi A, Hartley M, Kainz P, Koch K, Le Dévédec SE, Mangas I, Miranda E, Nyffeler J, Pesenti E, Ricci F, Schmied C, Schreiner A, Stokar-Regenscheit N, Swedlow JR, Uhlmann V, Wieland FC, Wilson A, Whelan M. Bridging imaging-based in vitro methods from biomedical research to regulatory toxicology. Arch Toxicol 2025;99:1271-1285. [PMID: 39945818 PMCID: PMC11968550 DOI: 10.1007/s00204-024-03922-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Accepted: 11/26/2024] [Indexed: 04/04/2025]
14
Williams AJ, Richard AM. Three pillars for ensuring public access and integrity of chemical databases powering cheminformatics. J Cheminform 2025;17:40. [PMID: 40156073 PMCID: PMC11954203 DOI: 10.1186/s13321-025-00983-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Accepted: 03/04/2025] [Indexed: 04/01/2025]  Open
15
Rosa LS, Sarhan M, Pimentel AS. Toxic Alerts of Endocrine Disruption Revealed by Explainable Artificial Intelligence. ENVIRONMENT & HEALTH (WASHINGTON, D.C.) 2025;3:321-333. [PMID: 40144324 PMCID: PMC11934200 DOI: 10.1021/envhealth.4c00218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2024] [Revised: 01/10/2025] [Accepted: 01/16/2025] [Indexed: 03/28/2025]
16
Makarov DM, Ksenofontov AA, Budkov YA. Consensus Modeling for Predicting Chemical Binding to Transthyretin as the Winning Solution of the Tox24 Challenge. Chem Res Toxicol 2025;38:392-399. [PMID: 39969008 DOI: 10.1021/acs.chemrestox.4c00421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/20/2025]
17
Zhang X, Han X, Xiang T, Liu Y, Pan W, Xue Q, Liu X, Fu J, Zhang A, Qu G, Jiang G. From High Resolution Tandem Mass Spectrometry to Pollutant Toxicity AI-Based Prediction: A Case Study of 7 Endocrine Disruptors Endpoints. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2025;59:4505-4517. [PMID: 40025698 DOI: 10.1021/acs.est.4c11417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/04/2025]
18
Teri D, Aly NA, Dodds JN, Zhang J, Thiessen PA, Bolton EE, Joseph KM, Williams AJ, Schymanski EL, Rusyn I, Baker ES. Reference Library for Suspect Non-targeted Screening of Environmental Toxicants Using Ion Mobility Spectrometry-Mass Spectrometry. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.22.639656. [PMID: 40060593 PMCID: PMC11888245 DOI: 10.1101/2025.02.22.639656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/20/2025]
19
Wong TH, Khater IM, Hallgrimson C, Li YL, Hamarneh G, Nabi IR. SuperResNET - single-molecule network analysis detects changes to clathrin structure induced by small-molecule inhibitors. J Cell Sci 2025;138:JCS263570. [PMID: 39865933 DOI: 10.1242/jcs.263570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Accepted: 01/17/2025] [Indexed: 01/28/2025]  Open
20
Arturi K, Harris EJ, Gasser L, Escher BI, Braun G, Bosshard R, Hollender J. MLinvitroTox reloaded for high-throughput hazard-based prioritization of high-resolution mass spectrometry data. J Cheminform 2025;17:14. [PMID: 39891244 PMCID: PMC11786476 DOI: 10.1186/s13321-025-00950-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2024] [Accepted: 01/06/2025] [Indexed: 02/03/2025]  Open
21
Richard AM, Tao D, LeClair CA, Leister W, Tretyakov KV, White E, Lewis KC, Sefler A, Shinn P, Collins BJ, Nguyen DT, Ye L, Zhao T, Xu T, Williams AJ, Waidyanatha S, Thomas RS, Tice R, Simeonov A, Huang R. Analytical Quality Evaluation of the Tox21 Compound Library. Chem Res Toxicol 2025;38:15-41. [PMID: 39829241 PMCID: PMC11752516 DOI: 10.1021/acs.chemrestox.4c00330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 12/09/2024] [Accepted: 12/12/2024] [Indexed: 01/22/2025]
22
Sedlak D, Tuma R, Kolla JN, Mokhamatam RB, Bahrova L, Lisova M, Bittova L, Jindra M. Unique and Common Agonists Activate the Insect Juvenile Hormone Receptor and the Human AHR. J Mol Biol 2025;437:168883. [PMID: 39608634 DOI: 10.1016/j.jmb.2024.168883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Accepted: 11/20/2024] [Indexed: 11/30/2024]
23
Kretschmer F, Seipp J, Ludwig M, Klau GW, Böcker S. Coverage bias in small molecule machine learning. Nat Commun 2025;16:554. [PMID: 39788952 PMCID: PMC11718084 DOI: 10.1038/s41467-024-55462-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 12/12/2024] [Indexed: 01/12/2025]  Open
24
Gao X, Zhang F, Guo X, Yao M, Wang X, Chen D, Zhang G, Wang X, Lai L. Attention-based deep learning for accurate cell image analysis. Sci Rep 2025;15:1265. [PMID: 39779905 PMCID: PMC11711278 DOI: 10.1038/s41598-025-85608-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 01/03/2025] [Indexed: 01/11/2025]  Open
25
Gini GC. QSAR: Using the Past to Study the Present. Methods Mol Biol 2025;2834:3-39. [PMID: 39312158 DOI: 10.1007/978-1-0716-4003-6_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2024]
26
Morris-Schaffer K, Higgins L, Kocabas NA, Faulhammer F, Cordova A, Freeman E, Kamp H, Nahar M, Richmond E, Rooseboom M. A weight of evidence review on the mode of action, adversity, and the human relevance of xylene's observed thyroid effects in rats. Crit Rev Toxicol 2025;55:1-26. [PMID: 39785829 DOI: 10.1080/10408444.2024.2422890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 10/23/2024] [Accepted: 10/23/2024] [Indexed: 01/12/2025]
27
Evangelista M, Chirico N, Papa E. In silico models for the screening of human transthyretin disruptors. JOURNAL OF HAZARDOUS MATERIALS 2024;480:136188. [PMID: 39454338 DOI: 10.1016/j.jhazmat.2024.136188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Revised: 09/28/2024] [Accepted: 10/15/2024] [Indexed: 10/28/2024]
28
Liang W, Su W, Zhong L, Yang Z, Li T, Liang Y, Ruan T, Jiang G. Comprehensive Characterization of Oxidative Stress-Modulating Chemicals Using GPT-Based Text Mining. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:20540-20552. [PMID: 39513989 DOI: 10.1021/acs.est.4c07390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
29
Kim D, Na K, Choi J. Mechanism-based toxicity screening of organophosphate flame retardants using Tox21 assays and molecular docking analysis. CHEMOSPHERE 2024;368:143772. [PMID: 39566687 DOI: 10.1016/j.chemosphere.2024.143772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2024] [Revised: 11/01/2024] [Accepted: 11/16/2024] [Indexed: 11/22/2024]
30
Luo X, Xu T, Ngan DK, Xia M, Zhao J, Sakamuru S, Simeonov A, Huang R. Prediction of chemical-induced acute toxicity using in vitro assay data and chemical structure. Toxicol Appl Pharmacol 2024;492:117098. [PMID: 39251042 PMCID: PMC11563913 DOI: 10.1016/j.taap.2024.117098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Revised: 07/31/2024] [Accepted: 09/06/2024] [Indexed: 09/11/2024]
31
Kruger L, Ngan DK, Xu T, Zhang L, Xia M, Simeonov A, Huang R. Evaluating the Utility of the MSTI Assay in Predicting Compound Promiscuity and Cytotoxicity. Chem Res Toxicol 2024;37:1691-1697. [PMID: 39255953 DOI: 10.1021/acs.chemrestox.4c00243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2024]
32
Xu J, Huang Z, Duan H, Li W, Zhuang J, Xiong L, Tang Y, Liu G. In Silico Prediction of ERRα Agonists Based on Combined Features and Stacking Ensemble Method. ChemMedChem 2024;19:e202400298. [PMID: 38923819 DOI: 10.1002/cmdc.202400298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 06/07/2024] [Accepted: 06/21/2024] [Indexed: 06/28/2024]
33
Niu S, Dong Z, Li L, Ng C. Identifying long-term health risks associated with environmental chemical incidents. JOURNAL OF HAZARDOUS MATERIALS 2024;478:135432. [PMID: 39116740 DOI: 10.1016/j.jhazmat.2024.135432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 08/02/2024] [Accepted: 08/03/2024] [Indexed: 08/10/2024]
34
Barrett H, Sun J, Chen Y, Yang D, Verreault J, Houde M, Wania F, Peng H. Emerging investigator series: nontargeted screening of aryl hydrocarbon receptor agonists in endangered beluga whales from the St. Lawrence Estuary: beyond legacy contaminants. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2024;26:1451-1464. [PMID: 38904418 DOI: 10.1039/d4em00243a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
35
Xin L, Liu S, Shi W, Ying GG, Hui X, Chen CE. Knowledge-based machine learning for predicting and understanding the androgen receptor (AR)-mediated reproductive toxicity in zebrafish. ENVIRONMENT INTERNATIONAL 2024;191:108995. [PMID: 39241331 DOI: 10.1016/j.envint.2024.108995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2024] [Revised: 08/10/2024] [Accepted: 09/01/2024] [Indexed: 09/09/2024]
36
Yang S, Zhang L, Khan K, Travers J, Huang R, Jovanovic VM, Veeramachaneni R, Sakamuru S, Tristan CA, Davis EE, Klumpp-Thomas C, Witt KL, Simeonov A, Shaw ND, Xia M. Identification of Environmental Compounds That May Trigger Early Female Puberty by Activating Human GnRHR and KISS1R. Endocrinology 2024;165:bqae103. [PMID: 39254333 PMCID: PMC11384912 DOI: 10.1210/endocr/bqae103] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Indexed: 09/11/2024]
37
An S, Park IG, Hwang SY, Gong J, Lee Y, Ahn S, Noh M. Cheminformatic Read-Across Approach Revealed Ultraviolet Filter Cinoxate as an Obesogenic Peroxisome Proliferator-Activated Receptor γ Agonist. Chem Res Toxicol 2024;37:1344-1355. [PMID: 39095321 DOI: 10.1021/acs.chemrestox.4c00091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
38
James BD, Medvedev AV, Makarov SS, Nelson RK, Reddy CM, Hahn ME. Moldable Plastics (Polycaprolactone) can be Acutely Toxic to Developing Zebrafish and Activate Nuclear Receptors in Mammalian Cells. ACS Biomater Sci Eng 2024;10:5237-5251. [PMID: 38981095 PMCID: PMC11323200 DOI: 10.1021/acsbiomaterials.4c00693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/11/2024]
39
Saifi I, Bhat BA, Hamdani SS, Bhat UY, Lobato-Tapia CA, Mir MA, Dar TUH, Ganie SA. Artificial intelligence and cheminformatics tools: a contribution to the drug development and chemical science. J Biomol Struct Dyn 2024;42:6523-6541. [PMID: 37434311 DOI: 10.1080/07391102.2023.2234039] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Accepted: 07/03/2023] [Indexed: 07/13/2023]
40
Guzman-Pando A, Ramirez-Alonso G, Arzate-Quintana C, Camarillo-Cisneros J. Deep learning algorithms applied to computational chemistry. Mol Divers 2024;28:2375-2410. [PMID: 38151697 DOI: 10.1007/s11030-023-10771-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 11/14/2023] [Indexed: 12/29/2023]
41
Lai Y, Koelmel JP, Walker DI, Price EJ, Papazian S, Manz KE, Castilla-Fernández D, Bowden JA, Nikiforov V, David A, Bessonneau V, Amer B, Seethapathy S, Hu X, Lin EZ, Jbebli A, McNeil BR, Barupal D, Cerasa M, Xie H, Kalia V, Nandakumar R, Singh R, Tian Z, Gao P, Zhao Y, Froment J, Rostkowski P, Dubey S, Coufalíková K, Seličová H, Hecht H, Liu S, Udhani HH, Restituito S, Tchou-Wong KM, Lu K, Martin JW, Warth B, Godri Pollitt KJ, Klánová J, Fiehn O, Metz TO, Pennell KD, Jones DP, Miller GW. High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:12784-12822. [PMID: 38984754 PMCID: PMC11271014 DOI: 10.1021/acs.est.4c01156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 06/11/2024] [Accepted: 06/12/2024] [Indexed: 07/11/2024]
42
Tetko IV. Tox24 Challenge. Chem Res Toxicol 2024;37:825-826. [PMID: 38769907 DOI: 10.1021/acs.chemrestox.4c00192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]
43
Lovrić M, Wang T, Staffe MR, Šunić I, Časni K, Lasky-Su J, Chawes B, Rasmussen MA. A Chemical Structure and Machine Learning Approach to Assess the Potential Bioactivity of Endogenous Metabolites and Their Association with Early Childhood Systemic Inflammation. Metabolites 2024;14:278. [PMID: 38786755 PMCID: PMC11122766 DOI: 10.3390/metabo14050278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Revised: 04/29/2024] [Accepted: 05/08/2024] [Indexed: 05/25/2024]  Open
44
Serafini MM, Sepehri S, Midali M, Stinckens M, Biesiekierska M, Wolniakowska A, Gatzios A, Rundén-Pran E, Reszka E, Marinovich M, Vanhaecke T, Roszak J, Viviani B, SenGupta T. Recent advances and current challenges of new approach methodologies in developmental and adult neurotoxicity testing. Arch Toxicol 2024;98:1271-1295. [PMID: 38480536 PMCID: PMC10965660 DOI: 10.1007/s00204-024-03703-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 02/06/2024] [Indexed: 03/27/2024]
45
Rahu I, Kull M, Kruve A. Predicting the Activity of Unidentified Chemicals in Complementary Bioassays from the HRMS Data to Pinpoint Potential Endocrine Disruptors. J Chem Inf Model 2024;64:3093-3104. [PMID: 38523265 PMCID: PMC11040721 DOI: 10.1021/acs.jcim.3c02050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 03/07/2024] [Accepted: 03/15/2024] [Indexed: 03/26/2024]
46
Nelms MD, Antonijevic T, Ring C, Harris DL, Bever RJ, Lynn SG, Williams D, Chappell G, Boyles R, Borghoff S, Edwards SW, Markey K. Chemistry domain of applicability evaluation against existing estrogen receptor high-throughput assay-based activity models. FRONTIERS IN TOXICOLOGY 2024;6:1346767. [PMID: 38694816 PMCID: PMC11061348 DOI: 10.3389/ftox.2024.1346767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 03/26/2024] [Indexed: 05/04/2024]  Open
47
Shkil DO, Muhamedzhanova AA, Petrov PI, Skorb EV, Aliev TA, Steshin IS, Tumanov AV, Kislinskiy AS, Fedorov MV. Expanding Predictive Capacities in Toxicology: Insights from Hackathon-Enhanced Data and Model Aggregation. Molecules 2024;29:1826. [PMID: 38675645 PMCID: PMC11055041 DOI: 10.3390/molecules29081826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/11/2024] [Accepted: 04/15/2024] [Indexed: 04/28/2024]  Open
48
Choi JI, Song WS, Koh DH, Kim EY. In Silico and In Vitro multiple analysis approach for screening naturally derived ligands for red seabream aryl hydrocarbon receptor. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024;275:116262. [PMID: 38569320 DOI: 10.1016/j.ecoenv.2024.116262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/20/2024] [Accepted: 03/23/2024] [Indexed: 04/05/2024]
49
Charest N, Lowe CN, Ramsland C, Meyer B, Samano V, Williams AJ. Improving predictions of compound amenability for liquid chromatography-mass spectrometry to enhance non-targeted analysis. Anal Bioanal Chem 2024;416:2565-2579. [PMID: 38530399 PMCID: PMC11228616 DOI: 10.1007/s00216-024-05229-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 02/14/2024] [Accepted: 02/16/2024] [Indexed: 03/28/2024]
50
Browne P, Paul Friedman K, Boekelheide K, Thomas RS. Adverse effects in traditional and alternative toxicity tests. Regul Toxicol Pharmacol 2024;148:105579. [PMID: 38309424 PMCID: PMC11062625 DOI: 10.1016/j.yrtph.2024.105579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 01/10/2024] [Accepted: 01/31/2024] [Indexed: 02/05/2024]
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