1
|
Earnest R, Hahn AM, Feriancek NM, Brandt M, Filler RB, Zhao Z, Breban MI, Vogels CBF, Chen NFG, Koch RT, Porzucek AJ, Sodeinde A, Garbiel A, Keanna C, Litwak H, Stuber HR, Cantoni JL, Pitzer VE, Olarte Castillo XA, Goodman LB, Wilen CB, Linske MA, Williams SC, Grubaugh ND. Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.22.559030. [PMID: 37808797 PMCID: PMC10557615 DOI: 10.1101/2023.09.22.559030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
Abstract
Diverse mammalian species display susceptibility to and infection with SARS-CoV-2. Potential SARS-CoV-2 spillback into rodents is understudied despite their host role for numerous zoonoses and human proximity. We assessed exposure and infection among white-footed mice (Peromyscus leucopus) in Connecticut, USA. We observed 1% (6/540) wild-type neutralizing antibody seroprevalence among 2020-2022 residential mice with no cross-neutralization of variants. We detected no SARS-CoV-2 infections via RT-qPCR, but identified non-SARS-CoV-2 betacoronavirus infections via pan-coronavirus PCR among 1% (5/468) of residential mice. Sequencing revealed two divergent betacoronaviruses, preliminarily named Peromyscus coronavirus-1 and -2. Both belong to the Betacoronavirus 1 species and are ~90% identical to the closest known relative, Porcine hemagglutinating encephalomyelitis virus. Low SARS-CoV-2 seroprevalence suggests white-footed mice may not be sufficiently susceptible or exposed to SARS-CoV-2 to present a long-term human health risk. However, the discovery of divergent, non-SARS-CoV-2 betacoronaviruses expands the diversity of known rodent coronaviruses and further investigation is required to understand their transmission extent.
Collapse
Affiliation(s)
- Rebecca Earnest
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Anne M Hahn
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Nicole M Feriancek
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Matthew Brandt
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Renata B Filler
- Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT 06520, USA
- Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA
| | - Zhe Zhao
- Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT 06520, USA
- Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA
| | - Mallery I Breban
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Chantal B F Vogels
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Nicholas F G Chen
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Robert T Koch
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Abbey J Porzucek
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Afeez Sodeinde
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Alexa Garbiel
- Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Claire Keanna
- Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Hannah Litwak
- Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Heidi R Stuber
- Department of Entomology, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Jamie L Cantoni
- Department of Entomology, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Virginia E Pitzer
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
| | - Ximena A Olarte Castillo
- Department of Microbiology and Immunology, Cornell University College of Veterinary Medicine, Ithaca, NY 14853
| | - Laura B Goodman
- Department of Public & Ecosystem Health, Cornell University College of Veterinary Medicine, Ithaca, NY 14853
| | - Craig B Wilen
- Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT 06520, USA
- Department of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA
| | - Megan A Linske
- Department of Entomology, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Scott C Williams
- Department of Environmental Science and Forestry, The Connecticut Agricultural Experiment Station, New Haven, CT 06511, USA
| | - Nathan D Grubaugh
- Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06510, USA
| |
Collapse
|
2
|
Xu FH, Han PY, Tian JW, Zong LD, Yin HM, Zhao JY, Yang Z, Kong W, Ge XY, Zhang YZ. Detection of Alpha- and Betacoronaviruses in Small Mammals in Western Yunnan Province, China. Viruses 2023; 15:1965. [PMID: 37766371 PMCID: PMC10535241 DOI: 10.3390/v15091965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Revised: 09/16/2023] [Accepted: 09/18/2023] [Indexed: 09/29/2023] Open
Abstract
The genetic diversity of coronaviruses (CoVs) is high, and their infection in animals has not yet been fully revealed. By RT-PCR detection of the partial RNA-dependent RNA polymerase (RdRp) gene of CoVs, we screened a total of 502 small mammals in the Dali and Nujiang prefectures of Western Yunnan Province, China. The number of overall CoV positives was 20, including β-CoV (n = 13) and α-CoV (n = 7), with a 3.98% prevalence in rectal tissue samples. The identity of the partial RdRp genes obtained for 13 strains of β-CoV was 83.42-99.23% at the nucleotide level, and it is worth noting that the two strains from Kachin red-backed voles showed high identity to BOV-36/IND/2015 from Indian bovines and DcCoV-HKU23 from dromedary camels (Camelus dromedarius) in Morocco; the nucleotide identity was between 97.86 and 98.33%. Similarly, the identity of the seven strains of α-CoV among the partial RdRp sequences was 94.00-99.18% at nucleotide levels. The viral load in different tissues was measured by quantitative RT-PCR (qRT-PCR). The average CoV viral load in small mammalian rectal tissue was 1.35 × 106 copies/g; differently, the mean CoV viral load in liver, heart, lung, spleen, and kidney tissue was from 0.97 × 103 to 3.95 × 103 copies/g, which revealed that CoV has extensive tropism in rectal tissue in small mammals (p < 0.0001). These results revealed the genetic diversity, epidemiology, and infective tropism of α-CoV and β-CoV in small mammals from Dali and Nujiang, which deepens the comprehension of the retention and infection of coronavirus in natural hosts.
Collapse
Affiliation(s)
- Fen-Hui Xu
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Pei-Yu Han
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Jia-Wei Tian
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Li-Dong Zong
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Hong-Min Yin
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Jun-Ying Zhao
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Ze Yang
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Wei Kong
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| | - Xing-Yi Ge
- College of Biology & Hunan Provincial Key Laboratory of Medical Virology, Hunan University, Changsha 410012, China;
| | - Yun-Zhi Zhang
- School of Public Health, Institute of Preventive Medicine, Dali University, Dali 671000, China; (F.-H.X.); (P.-Y.H.); (J.-W.T.); (L.-D.Z.); (H.-M.Y.); (J.-Y.Z.); (Z.Y.); (W.K.)
- Key Laboratory of Pathogen Resistant Plant Resources Screening Research in Western Yunnan, Dali 671000, China
- Key Laboratory of Cross-Border Prevention and Control and Quarantine of Zoonotic Diseases in Yunnan, Dali 671000, China
| |
Collapse
|
3
|
Temmam S, Tu TC, Regnault B, Bonomi M, Chrétien D, Vendramini L, Duong TN, Phong TV, Yen NT, Anh HN, Son TH, Anh PT, Amara F, Bigot T, Munier S, Thong VD, van der Werf S, Nam VS, Eloit M. Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence. Viruses 2023; 15:1897. [PMID: 37766303 PMCID: PMC10536463 DOI: 10.3390/v15091897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 08/11/2023] [Accepted: 09/06/2023] [Indexed: 09/29/2023] Open
Abstract
Bats are a major reservoir of zoonotic viruses, including coronaviruses. Since the emergence of SARS-CoV in 2002/2003 in Asia, important efforts have been made to describe the diversity of Coronaviridae circulating in bats worldwide, leading to the discovery of the precursors of epidemic and pandemic sarbecoviruses in horseshoe bats. We investigated the viral communities infecting horseshoe bats living in Northern Vietnam, and report here the first identification of sarbecoviruses in Rhinolophus thomasi and Rhinolophus siamensis bats. Phylogenetic characterization of seven strains of Vietnamese sarbecoviruses identified at least three clusters of viruses. Recombination and cross-species transmission between bats seemed to constitute major drivers of virus evolution. Vietnamese sarbecoviruses were mainly enteric, therefore constituting a risk of spillover for guano collectors or people visiting caves. To evaluate the zoonotic potential of these viruses, we analyzed in silico and in vitro the ability of their RBDs to bind to mammalian ACE2s and concluded that these viruses are likely restricted to their bat hosts. The workflow applied here to characterize the spillover potential of novel sarbecoviruses is of major interest for each time a new virus is discovered, in order to concentrate surveillance efforts on high-risk interfaces.
Collapse
Affiliation(s)
- Sarah Temmam
- Pathogen Discovery Laboratory, Institut Pasteur, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, The OIE Collaborating Center for the Detection and Identification in Humans of Emerging Animal Pathogens, Université Paris Cité, 75015 Paris, France
| | - Tran Cong Tu
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Béatrice Regnault
- Pathogen Discovery Laboratory, Institut Pasteur, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, The OIE Collaborating Center for the Detection and Identification in Humans of Emerging Animal Pathogens, Université Paris Cité, 75015 Paris, France
| | - Massimiliano Bonomi
- Structural Bioinformatics Unit, Institut Pasteur, CNRS UMR3528, Université Paris Cité, 75015 Paris, France
| | - Delphine Chrétien
- Pathogen Discovery Laboratory, Institut Pasteur, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, The OIE Collaborating Center for the Detection and Identification in Humans of Emerging Animal Pathogens, Université Paris Cité, 75015 Paris, France
| | - Léa Vendramini
- Pathogen Discovery Laboratory, Institut Pasteur, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, The OIE Collaborating Center for the Detection and Identification in Humans of Emerging Animal Pathogens, Université Paris Cité, 75015 Paris, France
| | - Tran Nhu Duong
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Tran Vu Phong
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Nguyen Thi Yen
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Hoang Ngoc Anh
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Tran Hai Son
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Pham Tuan Anh
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Faustine Amara
- Institut Pasteur, G5 Evolutionary Genomics of RNA Viruses, Université Paris Cité, 75015 Paris, France
| | - Thomas Bigot
- Pathogen Discovery Laboratory, Institut Pasteur, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, Bioinformatics and Biostatistics Hub, Université Paris Cité, 75015 Paris, France
| | - Sandie Munier
- Institut Pasteur, G5 Evolutionary Genomics of RNA Viruses, Université Paris Cité, 75015 Paris, France
| | - Vu Dinh Thong
- Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology (VAST), Hanoi 70072, Vietnam
| | - Sylvie van der Werf
- Molecular Genetics of RNA Viruses Unit, Institut Pasteur, CNRS UMR 3569, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, National Reference Center for Respiratory Viruses, Université Paris Cité, 75015 Paris, France
| | - Vu Sinh Nam
- National Institute of Hygiene and Epidemiology, Hanoi 100000, Vietnam
| | - Marc Eloit
- Pathogen Discovery Laboratory, Institut Pasteur, Université Paris Cité, 75015 Paris, France
- Institut Pasteur, The OIE Collaborating Center for the Detection and Identification in Humans of Emerging Animal Pathogens, Université Paris Cité, 75015 Paris, France
- Ecole Nationale Vétérinaire d’Alfort, University of Paris-Est, 77420 Maisons-Alfort, France
| |
Collapse
|
4
|
Cohen LE, Fagre AC, Chen B, Carlson CJ, Becker DJ. Coronavirus sampling and surveillance in bats from 1996-2019: a systematic review and meta-analysis. Nat Microbiol 2023; 8:1176-1186. [PMID: 37231088 PMCID: PMC10234814 DOI: 10.1038/s41564-023-01375-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 03/24/2023] [Indexed: 05/27/2023]
Abstract
The emergence of SARS-CoV-2 highlights a need for evidence-based strategies to monitor bat viruses. We performed a systematic review of coronavirus sampling (testing for RNA positivity) in bats globally. We identified 110 studies published between 2005 and 2020 that collectively reported positivity from 89,752 bat samples. We compiled 2,274 records of infection prevalence at the finest methodological, spatiotemporal and phylogenetic level of detail possible from public records into an open, static database named datacov, together with metadata on sampling and diagnostic methods. We found substantial heterogeneity in viral prevalence across studies, reflecting spatiotemporal variation in viral dynamics and methodological differences. Meta-analysis identified sample type and sampling design as the best predictors of prevalence, with virus detection maximized in rectal and faecal samples and by repeat sampling of the same site. Fewer than one in five studies collected and reported longitudinal data, and euthanasia did not improve virus detection. We show that bat sampling before the SARS-CoV-2 pandemic was concentrated in China, with research gaps in South Asia, the Americas and sub-Saharan Africa, and in subfamilies of phyllostomid bats. We propose that surveillance strategies should address these gaps to improve global health security and enable the origins of zoonotic coronaviruses to be identified.
Collapse
Affiliation(s)
- Lily E Cohen
- Icahn School of Medicine at Mount Sinai, New York, NY, USA.
| | - Anna C Fagre
- Department of Microbiology, Immunology, and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA
| | - Binqi Chen
- Center for Global Health Science and Security, Georgetown University Medical Center, Washington, DC, USA
| | - Colin J Carlson
- Center for Global Health Science and Security, Georgetown University Medical Center, Washington, DC, USA
| | - Daniel J Becker
- Department of Biology, University of Oklahoma, Norman, OK, USA
| |
Collapse
|
5
|
Latinne A, Nga NTT, Long NV, Ngoc PTB, Thuy HB, Long NV, Long PT, Phuong NT, Quang LTV, Tung N, Nam VS, Duoc VT, Thinh ND, Schoepp R, Ricks K, Inui K, Padungtod P, Johnson CK, Mazet JAK, Walzer C, Olson SH, Fine AE. One Health Surveillance Highlights Circulation of Viruses with Zoonotic Potential in Bats, Pigs, and Humans in Viet Nam. Viruses 2023; 15:v15030790. [PMID: 36992498 PMCID: PMC10053906 DOI: 10.3390/v15030790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Revised: 03/12/2023] [Accepted: 03/15/2023] [Indexed: 03/31/2023] Open
Abstract
A One Health cross-sectoral surveillance approach was implemented to screen biological samples from bats, pigs, and humans at high-risk interfaces for zoonotic viral spillover for five viral families with zoonotic potential in Viet Nam. Over 1600 animal and human samples from bat guano harvesting sites, natural bat roosts, and pig farming operations were tested for coronaviruses (CoVs), paramyxoviruses, influenza viruses, filoviruses and flaviviruses using consensus PCR assays. Human samples were also tested using immunoassays to detect antibodies against eight virus groups. Significant viral diversity, including CoVs closely related to ancestors of pig pathogens, was detected in bats roosting at the human-animal interfaces, illustrating the high risk for CoV spillover from bats to pigs in Viet Nam, where pig density is very high. Season and reproductive period were significantly associated with the detection of bat CoVs, with site-specific effects. Phylogeographic analysis indicated localized viral transmission among pig farms. Our limited human sampling did not detect any known zoonotic bat viruses in human communities living close to the bat cave and harvesting bat guano, but our serological assays showed possible previous exposure to Marburg virus-like (Filoviridae), Crimean-Congo hemorrhagic fever virus-like (Bunyaviridae) viruses and flaviviruses. Targeted and coordinated One Health surveillance helped uncover this viral pathogen emergence hotspot.
Collapse
Affiliation(s)
- Alice Latinne
- Wildlife Conservation Society, Viet Nam Country Program, Hanoi 11111, Viet Nam
- Wildlife Conservation Society, Health Program, Bronx, NY 10460, USA
| | | | - Nguyen Van Long
- Wildlife Conservation Society, Viet Nam Country Program, Hanoi 11111, Viet Nam
| | - Pham Thi Bich Ngoc
- Wildlife Conservation Society, Viet Nam Country Program, Hanoi 11111, Viet Nam
| | - Hoang Bich Thuy
- Wildlife Conservation Society, Viet Nam Country Program, Hanoi 11111, Viet Nam
| | - Nguyen Van Long
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Hanoi 11519, Viet Nam
| | - Pham Thanh Long
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Hanoi 11519, Viet Nam
| | | | - Le Tin Vinh Quang
- Regional Animal Health Office No. 6, Ho Chi Minh City 72106, Viet Nam
| | - Nguyen Tung
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Hanoi 11519, Viet Nam
| | - Vu Sinh Nam
- National Institute of Hygiene and Epidemiology, Ministry of Health, Hanoi 11611, Viet Nam
| | - Vu Trong Duoc
- National Institute of Hygiene and Epidemiology, Ministry of Health, Hanoi 11611, Viet Nam
| | - Nguyen Duc Thinh
- National Institute of Hygiene and Epidemiology, Ministry of Health, Hanoi 11611, Viet Nam
| | - Randal Schoepp
- Diagnostic Systems Division, U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - Keersten Ricks
- Diagnostic Systems Division, U.S. Army Medical Research Institute of Infectious Diseases, Frederick, MD 21702, USA
| | - Ken Inui
- Food and Agriculture Organization of the United Nations (FAO), Country Office for Viet Nam, Hanoi 11112, Viet Nam
| | - Pawin Padungtod
- Food and Agriculture Organization of the United Nations (FAO), Country Office for Viet Nam, Hanoi 11112, Viet Nam
| | - Christine K Johnson
- One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Jonna A K Mazet
- One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Chris Walzer
- Wildlife Conservation Society, Health Program, Bronx, NY 10460, USA
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, 1210 Vienna, Austria
| | - Sarah H Olson
- Wildlife Conservation Society, Health Program, Bronx, NY 10460, USA
| | - Amanda E Fine
- Wildlife Conservation Society, Viet Nam Country Program, Hanoi 11111, Viet Nam
- Wildlife Conservation Society, Health Program, Bronx, NY 10460, USA
| |
Collapse
|
6
|
Mohd-Qawiem F, Nawal-Amani AR, Faranieyza-Afiqah F, Yasmin AR, Arshad SS, Norfitriah MS, Nur-Fazila SH. Paramyxoviruses in rodents: A review. Open Vet J 2022; 12:868-876. [PMID: 36650879 PMCID: PMC9805762 DOI: 10.5455/ovj.2022.v12.i6.14] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Accepted: 10/20/2022] [Indexed: 11/27/2022] Open
Abstract
Paramyxoviruses have been shown to infect a wide range of hosts, including rodents, and humans. Several novel murine paramyxoviruses have been discovered in the last several decades. Although these viruses are unclassified, they are recognized as Beilong virus, Mojiang virus (MojV), and Tailam virus in rats, Jeilongvirus, Nariva, Paju Apodemus paramyxovirus-1 and -2 in mice, and Pentlands paramyxovirus-1, -2, and -3 in squirrels. These paramyxoviruses were reported mainly in China and a few other countries like Australia, the Republic of Korea, Trinidad, and France. In June 2012, it becomes a great concern in China whereby, three miners were reported dead potentially caused by a novel zoonotic MojV, a henipa-like virus isolated from tissue samples of rats from the same cave. Rats are considered to be natural hosts for the MojV from the literature research. The classified paramyxovirus, Sendai virus in rodents is also reviewed. Paramyxoviruses infection in rodents leads to respiratory distress such as necrotizing rhinitis, tracheitis, bronchiolitis, and interstitial pneumonia. Infections caused by paramyxoviruses often spread between species, manifesting disease in spillover hosts, including humans. This review focuses on the paramyxoviruses in rodents, including the epidemiological distributions, transmission and pathogenesis, clinical manifestations, diagnostic methods, and control and prevention of paramyxoviruses infection to provide a better understanding of these highly mutating viruses.
Collapse
Affiliation(s)
- Firdaus Mohd-Qawiem
- Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
| | - Abdul Rahman Nawal-Amani
- Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
| | - Farzee Faranieyza-Afiqah
- Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
| | - Abd Rahaman Yasmin
- Department of Veterinary Laboratory Diagnostics, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
- Laboratory of Vaccines and Immunotherapeutic, Institute of Bioscience, Universiti Putra Malaysia, Serdang, Malaysia
| | - Siti Suri Arshad
- Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
| | - Mohamed Sohaimi Norfitriah
- Department of Veterinary Laboratory Diagnostics, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
- Laboratory of Vaccines and Immunotherapeutic, Institute of Bioscience, Universiti Putra Malaysia, Serdang, Malaysia
| | - Saulol Hamid Nur-Fazila
- Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine, Universiti Putra Malaysia, Serdang, Malaysia
| |
Collapse
|
7
|
Jones S, Bell T, Coleman CM, Harris D, Woodward G, Worledge L, Roberts H, McElhinney L, Aegerter J, Ransome E, Savolainen V. Testing bats in rehabilitation for SARS-CoV-2 before release into the wild. CONSERVATION SCIENCE AND PRACTICE 2022; 4:e12707. [PMID: 35935171 PMCID: PMC9347622 DOI: 10.1111/csp2.12707] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 03/10/2022] [Accepted: 04/22/2022] [Indexed: 12/24/2022] Open
Abstract
Several studies have suggested SARS-CoV-2 originated from a viral ancestor in bats, but whether transmission occurred directly or via an intermediary host to humans remains unknown. Concerns of spillover of SARS-CoV-2 into wild bat populations are hindering bat rehabilitation and conservation efforts in the United Kingdom and elsewhere. Current protocols state that animals cared for by individuals who have tested positive for SARS-CoV-2 cannot be released into the wild and must be isolated to reduce the risk of transmission to wild populations. Here, we propose a reverse transcription-quantitative polymerase chain reaction (RT-qPCR)-based protocol for detection of SARS-CoV-2 in bats, using fecal sampling. Bats from the United Kingdom were tested following suspected exposure to SARS-CoV-2 and tested negative for the virus. With current UK and international legislation, the identification of SARS-CoV-2 infection in wild animals is becoming increasingly important, and protocols such as the one developed here will help improve understanding and mitigation of SARS-CoV-2 in the future.
Collapse
Affiliation(s)
- Scott Jones
- Department of Life Sciences, Georgina Mace Centre for the Living PlanetImperial College LondonLondonUK
| | - Thomas Bell
- Department of Life Sciences, Georgina Mace Centre for the Living PlanetImperial College LondonLondonUK
| | | | - Danielle Harris
- Department of Life Sciences, Georgina Mace Centre for the Living PlanetImperial College LondonLondonUK
| | - Guy Woodward
- Department of Life Sciences, Georgina Mace Centre for the Living PlanetImperial College LondonLondonUK
| | - Lisa Worledge
- Bat Conservation Trust, Cloisters Business CentreLondonUK
| | - Helen Roberts
- Department for EnvironmentFood & Rural Affairs (Defra)LondonUK
| | | | - James Aegerter
- National Wildlife Management CentreAnimal and Plant Health AgencyYorkUK
| | - Emma Ransome
- Department of Life Sciences, Georgina Mace Centre for the Living PlanetImperial College LondonLondonUK
| | - Vincent Savolainen
- Department of Life Sciences, Georgina Mace Centre for the Living PlanetImperial College LondonLondonUK
| |
Collapse
|
8
|
Vanmechelen B, Meurs S, Horemans M, Loosen A, Joly Maes T, Laenen L, Vergote V, Koundouno FR, Magassouba N, Konde MK, Condé IS, Carroll MW, Maes P. The Characterization of Multiple Novel Paramyxoviruses Highlights the Diverse Nature of the Subfamily Orthoparamyxovirinae. Virus Evol 2022; 8:veac061. [PMID: 35854826 PMCID: PMC9290864 DOI: 10.1093/ve/veac061] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 05/14/2022] [Accepted: 06/29/2022] [Indexed: 11/26/2022] Open
Abstract
The subfamily Orthoparamyxovirinae is a group of single-stranded, negative-sense RNA viruses that contains many human, animal, and zoonotic pathogens. While there are currently only forty-two recognized species in this subfamily, recent research has revealed that much of its diversity remains to be characterized. Using a newly developed nested PCR-based screening assay, we report here the discovery of fifteen orthoparamyxoviruses in rodents and shrews from Belgium and Guinea, thirteen of which are believed to represent new species. Using a combination of nanopore and sanger sequencing, complete genomes could be determined for almost all these viruses, enabling a detailed evaluation of their genome characteristics. While most viruses are thought to belong to the rapidly expanding genus Jeilongvirus, we also identify novel members of the genera Narmovirus, Henipavirus, and Morbillivirus. Together with other recently discovered orthoparamyxoviruses, both henipaviruses and the morbillivirus discovered here appear to form distinct rodent-/shrew-borne clades within their respective genera, clustering separately from all currently classified viruses. In the case of the henipaviruses, a comparison of the different members of this clade revealed the presence of a secondary conserved open reading frame, encoding for a transmembrane protein, within the F gene, the biological relevance of which remains to be established. While the characteristics of the viruses described here shed further light on the complex evolutionary origin of paramyxoviruses, they also illustrate that the diversity of this group of viruses in terms of genome organization appears to be much larger than previously assumed.
Collapse
Affiliation(s)
- Bert Vanmechelen
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Sien Meurs
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Marie Horemans
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Arne Loosen
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Tibe Joly Maes
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Lies Laenen
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Valentijn Vergote
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| | - Fara Raymond Koundouno
- Laboratoire des fièvres hémorragiques et virales de Guinée , Conakry Guinea – Direction préfectorale de la santé de Gueckedou
| | - N’Faly Magassouba
- Projet des Fièvres Hémorragiques en Guinée, Laboratoire de Recherche en Virologie , Conakry, Guinea
| | - Mandy Kader Konde
- Center of Excellence for Training, Research on Malaria and Disease Control in Guinea (CEFORPAG) , Quartier Nongo, Ratoma, Conakry, Guinea
| | - Ibrahima Sory Condé
- Center of Excellence for Training, Research on Malaria and Disease Control in Guinea (CEFORPAG) , Quartier Nongo, Ratoma, Conakry, Guinea
| | - Miles W Carroll
- Pandemic Science Centre, Oxford University, Nuffield Department of Medicine, Wellcome Centre for Human Genetics , CCMP1st South, Roosevelt Dr, Headington, Oxford OX3 7BN, United Kingdom
| | - Piet Maes
- KU Leuven, Department of Microbiology, Immunology and Transplantation, Laboratory of Clinical and Epidemiological Virology, Rega Institute for Medical Research , Herestraat 49/Box 1040, BE3000 Leuven, Belgium
| |
Collapse
|
9
|
Wood R, Bangura U, Mariën J, Douno M, Fichet-Calvet E. Detection of Lassa virus in wild rodent feces: Implications for Lassa fever burden within households in the endemic region of Faranah, Guinea. One Health 2021; 13:100317. [PMID: 34522759 PMCID: PMC8424210 DOI: 10.1016/j.onehlt.2021.100317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 08/22/2021] [Accepted: 08/24/2021] [Indexed: 11/30/2022] Open
Abstract
Lassa arenavirus (LASV) is the cause of Lassa Fever in humans in West Africa. The multimammate mouse (Mastomys natalensis) is a reservoir host of LASV and the primary source of human infections. Humans are assumed to become infected due to contact with this animal or its excretions. Thus far, the available literature does not describe the sampling of feces as a means to detect LASV in M. natalensis populations. More evidence is needed to know if feces of naturally infected M. natalensis can be LASV-positive and an exposure risk to humans. This study sampled feces deposits in households from three villages in the LASV-endemic region of Faranah, Guinea. PCR analysis found 10 out of 88 samples to be positive for LASV, and sequencing showed clustering to previously identified Yarawelia and Dalafilani strains. We conclude that feces sampling is a viable, non-invasive method for the determination and sequencing of LASV strains.
Collapse
Affiliation(s)
- Rebekah Wood
- Bernhard-Nocht-Institute for Tropical Medicine, Hamburg, Germany
| | - Umaru Bangura
- Bernhard-Nocht-Institute for Tropical Medicine, Hamburg, Germany
| | - Joachim Mariën
- Evolutionary Ecology Group, Department of Biology, University of Antwerp, Antwerp, Belgium.,Virology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium
| | - Moussa Douno
- Laboratoire des Fièvres Hémorragiques de Guinée, Centre de Recherche en Virologie, Université Gamal Abdel Nasser de Conakry, Conakry, Guinée
| | | |
Collapse
|
10
|
Mu Y, Shao M, Zhong B, Zhao Y, Leung KMY, Giesy JP, Ma J, Wu F, Zeng F. Transmission of SARS-CoV-2 virus and ambient temperature: a critical review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:37051-37059. [PMID: 34053039 PMCID: PMC8164483 DOI: 10.1007/s11356-021-14625-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 05/25/2021] [Indexed: 06/12/2023]
Abstract
The coronavirus disease 2019 (COVID-19) pandemic has brought unprecedented public health, and social and economic challenges. It remains unclear whether seasonal changes in ambient temperature will alter spreading trajectory of the COVID-19 epidemic. The probable mechanism on this is still lacking. This review summarizes the most recent research data on the effect of ambient temperature on the COVID-19 epidemic characteristic. The available data suggest that (i) mesophilic traits of viruses are different due to their molecular composition; (ii) increasing ambient temperature decreases the persistence of some viruses in aquatic media; (iii) a 1°C increase in the average monthly minimum ambient temperatures (AMMAT) was related to a 0.72% fewer mammalian individuals that would be infected by coronavirus; (iv) proportion of zoonotic viruses of mammals including humans is probably related to their body temperature difference; (v) seasonal divergence between the northern and southern hemispheres may be a significant driver in determining a waved trajectory in the next 2 years. Further research is needed to understand its effects and mechanisms of global temperature change so that effective strategies can be adopted to curb its natural effects. This paper mainly explores possible scientific hypothesis and evidences that local communities and authorities should consider to find optimal solutions that can limit the transmission of SARS-CoV-2 virus.
Collapse
Affiliation(s)
- Yunsong Mu
- School of Environment & Natural Resources, Renmin University of China, No.59, Zhongguancun Street, Haidian District, Beijing, 100872, China.
| | - Meichen Shao
- School of Environment & Natural Resources, Renmin University of China, No.59, Zhongguancun Street, Haidian District, Beijing, 100872, China
| | - Buqing Zhong
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Yiqun Zhao
- School of Environment & Natural Resources, Renmin University of China, No.59, Zhongguancun Street, Haidian District, Beijing, 100872, China
| | - Kenneth M Y Leung
- State Key Laboratory of Marine Pollution and Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon, Hong Kong, China
| | - John P Giesy
- Toxicology Centre, University of Saskatchewan, Saskatoon, SK, Canada
- Department of Environmental Science, Baylor University, Waco, TX, USA
| | - Jin Ma
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China
| | - Fengchang Wu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China
| | - Fangang Zeng
- School of Environment & Natural Resources, Renmin University of China, No.59, Zhongguancun Street, Haidian District, Beijing, 100872, China.
| |
Collapse
|
11
|
Jelinek HF, Mousa M, Alefishat E, Osman W, Spence I, Bu D, Feng SF, Byrd J, Magni PA, Sahibzada S, Tay GK, Alsafar HS. Evolution, Ecology, and Zoonotic Transmission of Betacoronaviruses: A Review. Front Vet Sci 2021; 8:644414. [PMID: 34095271 PMCID: PMC8173069 DOI: 10.3389/fvets.2021.644414] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 03/25/2021] [Indexed: 12/18/2022] Open
Abstract
Coronavirus infections have been a part of the animal kingdom for millennia. The difference emerging in the twenty-first century is that a greater number of novel coronaviruses are being discovered primarily due to more advanced technology and that a greater number can be transmitted to humans, either directly or via an intermediate host. This has a range of effects from annual infections that are mild to full-blown pandemics. This review compares the zoonotic potential and relationship between MERS, SARS-CoV, and SARS-CoV-2. The role of bats as possible host species and possible intermediate hosts including pangolins, civets, mink, birds, and other mammals are discussed with reference to mutations of the viral genome affecting zoonosis. Ecological, social, cultural, and environmental factors that may play a role in zoonotic transmission are considered with reference to SARS-CoV, MERS, and SARS-CoV-2 and possible future zoonotic events.
Collapse
Affiliation(s)
- Herbert F. Jelinek
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Department of Biomedical Engineering, College of Engineering, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Center of Heath Engineering Innovation, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| | - Mira Mousa
- Nuffield Department of Women's and Reproduction Health, Oxford University, Oxford, United Kingdom
| | - Eman Alefishat
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Department of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Department of Biopharmaceutics and Clinical Pharmacy, School of Pharmacy, The University of Jordan, Amman, Jordan
| | - Wael Osman
- Department of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| | - Ian Spence
- Discipline of Pharmacology, University of Sydney, Sydney, NSW, Australia
| | - Dengpan Bu
- State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Science, Beijing, China
| | - Samuel F. Feng
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Department of Mathematics, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| | - Jason Byrd
- Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, United States
| | - Paola A. Magni
- Discipline of Medical, Molecular and Forensic Sciences, Murdoch University, Murdoch, WA, Australia
- Murdoch University Singapore, King's Centre, Singapore, Singapore
| | - Shafi Sahibzada
- Antimicrobial Resistance and Infectious Diseases Laboratory, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA, Australia
| | - Guan K. Tay
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Division of Psychiatry, Faculty of Health and Medical Sciences, The University of Western Australia, Crawley, WA, Australia
- School of Medical and Health Sciences, Edith Cowan University, Joondalup, WA, Australia
| | - Habiba S. Alsafar
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Department of Biomedical Engineering, College of Engineering, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Department of Genetics and Molecular Biology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
| |
Collapse
|
12
|
Carbone M, Lednicky J, Xiao SY, Venditti M, Bucci E. Coronavirus 2019 Infectious Disease Epidemic: Where We Are, What Can Be Done and Hope For. J Thorac Oncol 2021; 16:546-571. [PMID: 33422679 PMCID: PMC7832772 DOI: 10.1016/j.jtho.2020.12.014] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 12/15/2020] [Accepted: 12/29/2020] [Indexed: 12/18/2022]
Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spreads mainly by means of aerosols (microdroplets) in enclosed environments, especially those in which temperature and humidity are regulated by means of air-conditioning. About 30% of individuals infected with SARS-CoV-2 develop coronavirus disease 2019 (COVID-19) disease. Among them, approximately 25% require hospitalization. In medicine, cases are identified as those who become ill. During this pandemic, cases have been identified as those with a positive SARS-CoV-2 polymerase chain reaction test, including approximately 70% who were asymptomatic-this has caused unnecessary anxiety. Individuals more than 65 years old, those affected by obesity, diabetes, asthma, or are immune-depressed owing to cancer and other conditions, are at a higher risk of hospitalization and of dying of COVID-19. Healthy individuals younger than 40 years very rarely die of COVID-19. Estimates of the COVID-19 mortality rate vary because the definition of COVID-19-related deaths varies. Belgium has the highest death rate at 154.9 per 100,000 persons, because it includes anyone who died with symptoms compatible with COVID-19, even those never tested for SARS-CoV-2. The United States includes all patients who died with a positive test, whether they died because of, or with, SARS-CoV-2. Countries that include only patients in which COVID-19 was the main cause of death, rather than a cofactor, have lower death rates. Numerous therapies are being developed, and rapid improvements are anticipated. Because of disinformation, only approximately 50% of the U.S. population plans to receive a COVID-19 vaccine. By sharing accurate information, physicians, health professionals, and scientists play a key role in addressing myths and anxiety, help public health officials enact measures to decrease infections, and provide the best care for those who become sick. In this article, we discuss these issues.
Collapse
Affiliation(s)
- Michele Carbone
- Thoracic Oncology, University of Hawaii Cancer Center, Honolulu, Hawaii; Department of Pathology, John A. Burns School of Medicine, Hawaii, Honolulu, Hawaii.
| | - John Lednicky
- Department of Environmental and Global Health, College of Public Health and Health Professions, Emerging Pathogens Institute, University of Florida, Gainesville, Florida
| | - Shu-Yuan Xiao
- Department of Pathology, University of Chicago Medicine, Chicago, llinois
| | - Mario Venditti
- Department of Public Health and Infectious Diseases, Universita` La Sapienza, Roma, Italy
| | - Enrico Bucci
- Sbarro Institute for Cancer Research and Molecular Medicine, College for Science and technology, Temple University, Philadelphia, Pennsylvania; Department of Biology, College for Science and Technology, Temple University, Philadelphia, Pennsylvania
| |
Collapse
|
13
|
Frutos R, Serra-Cobo J, Pinault L, Lopez Roig M, Devaux CA. Emergence of Bat-Related Betacoronaviruses: Hazard and Risks. Front Microbiol 2021; 12:591535. [PMID: 33790874 PMCID: PMC8005542 DOI: 10.3389/fmicb.2021.591535] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 02/15/2021] [Indexed: 01/08/2023] Open
Abstract
The current Coronavirus Disease 2019 (COVID-19) pandemic, with more than 111 million reported cases and 2,500,000 deaths worldwide (mortality rate currently estimated at 2.2%), is a stark reminder that coronaviruses (CoV)-induced diseases remain a major threat to humanity. COVID-19 is only the latest case of betacoronavirus (β-CoV) epidemics/pandemics. In the last 20 years, two deadly CoV epidemics, Severe Acute Respiratory Syndrome (SARS; fatality rate 9.6%) and Middle East Respiratory Syndrome (MERS; fatality rate 34.7%), plus the emergence of HCoV-HKU1 which causes the winter common cold (fatality rate 0.5%), were already a source of public health concern. Betacoronaviruses can also be a threat for livestock, as evidenced by the Swine Acute Diarrhea Syndrome (SADS) epizootic in pigs. These repeated outbreaks of β-CoV-induced diseases raise the question of the dynamic of propagation of this group of viruses in wildlife and human ecosystems. SARS-CoV, SARS-CoV-2, and HCoV-HKU1 emerged in Asia, strongly suggesting the existence of a regional hot spot for emergence. However, there might be other regional hot spots, as seen with MERS-CoV, which emerged in the Arabian Peninsula. β-CoVs responsible for human respiratory infections are closely related to bat-borne viruses. Bats are present worldwide and their level of infection with CoVs is very high on all continents. However, there is as yet no evidence of direct bat-to-human coronavirus infection. Transmission of β-CoV to humans is considered to occur accidentally through contact with susceptible intermediate animal species. This zoonotic emergence is a complex process involving not only bats, wildlife and natural ecosystems, but also many anthropogenic and societal aspects. Here, we try to understand why only few hot spots of β-CoV emergence have been identified despite worldwide bats and bat-borne β-CoV distribution. In this work, we analyze and compare the natural and anthropogenic environments associated with the emergence of β-CoV and outline conserved features likely to create favorable conditions for a new epidemic. We suggest monitoring South and East Africa as well as South America as these regions bring together many of the conditions that could make them future hot spots.
Collapse
Affiliation(s)
- Roger Frutos
- Centre de coopération Internationale en Recherche Agronomique pour le Développement, UMR 17, Intertryp, Montpellier, France.,Institut d'Électronique et des Systèmes, UMR 5214, Université de Montpellier-CNRS, Montpellier, France
| | - Jordi Serra-Cobo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Biodiversity Research Institute, Barcelona, Spain
| | - Lucile Pinault
- Aix Marseille University, IRD, APHM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Marc Lopez Roig
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Biodiversity Research Institute, Barcelona, Spain
| | - Christian A Devaux
- Aix Marseille University, IRD, APHM, MEPHI, IHU-Méditerranée Infection, Marseille, France.,Centre National de la Recherche Scientifique, Marseille, France
| |
Collapse
|
14
|
Metagenomic Snapshots of Viral Components in Guinean Bats. Microorganisms 2021; 9:microorganisms9030599. [PMID: 33803988 PMCID: PMC7999534 DOI: 10.3390/microorganisms9030599] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 03/06/2021] [Accepted: 03/08/2021] [Indexed: 01/11/2023] Open
Abstract
To prevent the emergence of zoonotic infectious diseases and reduce their epidemic potential, we need to understand their origins in nature. Bats in the order Chiroptera are widely distributed worldwide and are natural reservoirs of prominent zoonotic viruses, including Nipah virus, Marburg virus, and possibly SARS-CoV-2. In this study, we applied unbiased metagenomic and metatranscriptomic approaches to decipher the virosphere of frugivorous and insectivorous bat species captured in Guéckédou, Guinea, the epicenter of the West African Ebola virus disease epidemic in 2013–2016. Our study provides a snapshot of the viral diversity present in these bat species, with several novel viruses reported for the first time in bats, as well as some bat viruses closely related to known human or animal pathogens. In addition, analysis of Mops condylurus genomic DNA samples revealed the presence of an Ebola virus nucleoprotein (NP)-derived pseudogene inserted in its genome. These findings provide insight into the evolutionary traits of several virus families in bats and add evidence that nonretroviral integrated RNA viruses (NIRVs) derived from filoviruses may be common in bat genomes.
Collapse
|
15
|
Devaux CA, Lagier JC, Raoult D. New Insights Into the Physiopathology of COVID-19: SARS-CoV-2-Associated Gastrointestinal Illness. Front Med (Lausanne) 2021; 8:640073. [PMID: 33681266 PMCID: PMC7930624 DOI: 10.3389/fmed.2021.640073] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 01/20/2021] [Indexed: 12/17/2022] Open
Abstract
Although SARS-CoV-2 is considered a lung-tropic virus that infects the respiratory tract through binding to the ACE2 cell-surface molecules present on alveolar lungs epithelial cells, gastrointestinal symptoms have been frequently reported in COVID-19 patients. What can be considered an apparent paradox is that these symptoms (e.g., diarrhea), sometimes precede the development of respiratory tract illness as if the breathing apparatus was not its first target during viral dissemination. Recently, evidence was reported that the gut is an active site of replication for SARS-CoV-2. This replication mainly occurs in mature enterocytes expressing the ACE2 viral receptor and TMPRSS4 protease. In this review we question how SARS-CoV-2 can cause intestinal disturbances, whether there are pneumocyte-tropic, enterocyte-tropic and/or dual tropic strains of SARS-CoV-2. We examine two major models: first, that of a virus directly causing damage locally (e.g., by inducing apoptosis of infected enterocytes); secondly, that of indirect effect of the virus (e.g., by inducing changes in the composition of the gut microbiota followed by the induction of an inflammatory process), and suggest that both situations probably occur simultaneously in COVID-19 patients. We eventually discuss the consequences of the virus replication in brush border of intestine on long-distance damages affecting other tissues/organs, particularly lungs.
Collapse
Affiliation(s)
- Christian A. Devaux
- Aix-Marseille University, IRD, APHM, MEPHI, IHU-Méditerranée Infection, Marseille, France
- CNRS, Marseille, France
| | - Jean-Christophe Lagier
- Aix-Marseille University, IRD, APHM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Didier Raoult
- Aix-Marseille University, IRD, APHM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| |
Collapse
|
16
|
Darcissac E, Donato D, de Thoisy B, Lacoste V, Lavergne A. Paramyxovirus circulation in bat species from French Guiana. INFECTION GENETICS AND EVOLUTION 2021; 90:104769. [PMID: 33588065 DOI: 10.1016/j.meegid.2021.104769] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 02/08/2021] [Accepted: 02/10/2021] [Indexed: 12/24/2022]
Abstract
Bats are recognized as reservoirs of numerous viruses. Among them, paramyxoviruses, for example, Hendra and Nipah viruses, are highly pathogenic to humans. Nothing is known regarding the circulation of this viral family in bats from French Guiana. To search for the presence of paramyxoviruses in this territory, 103 bats of seven different species were sampled and screened using a molecular approach. Four distinct paramyxovirus sequences were detected from three bat species (Desmodus rotundus, Carollia perspicillata, and Pteronotus alitonus) at high prevalence rates. In D. rotundus, two types of paramyxovirus co-circulate, with most of the bats co-infected. The phylogenetic analysis of these sequences revealed that three of them were closely related to previously characterized sequences from D. rotundus, C. perspicillata, and P. parnellii from Brazil and Costa Rica. The fourth sequence, identified in D. rotundus, was closely related to the one detected in P. alitonus in French Guiana and to previously described sequences detected in P. parnellii in Costa Rica. All paramyxovirus sequences detected in this study are close to the Jeilongvirus genus. Altogether, our results and those of previous studies indicate a wide geographical distribution of these paramyxoviruses (from Central to South America) and suggest potential cross-species transmissions of paramyxoviruses between two different bat families: Mormoopidae (P. alitonus) and Phyllostomidae (D. rotundus). In addition, their closeness to paramyxoviruses identified in rodents emphasizes the need to investigate the role of these animals as potential reservoirs or incidental hosts. Finally, the high prevalence rates of some paramyxoviruses in certain bat species, associated with the presence of large bat colonies and, in some cases, their potential proximity with humans are all parameters that can contribute to the risk of cross-species transmission between bat species and to the emergence of new paramyxoviruses in humans, a risk that deserves further investigation.
Collapse
Affiliation(s)
- Edith Darcissac
- Laboratoire des Interaction Virus Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana.
| | - Damien Donato
- Laboratoire des Interaction Virus Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana
| | - Benoît de Thoisy
- Laboratoire des Interaction Virus Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana
| | - Vincent Lacoste
- Laboratoire des Interaction Virus Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana; Département de Virologie, Institut Pasteur, Paris, France
| | - Anne Lavergne
- Laboratoire des Interaction Virus Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana.
| |
Collapse
|
17
|
Frutos R, Serra-Cobo J, Chen T, Devaux CA. COVID-19: Time to exonerate the pangolin from the transmission of SARS-CoV-2 to humans. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2020; 84:104493. [PMID: 32768565 PMCID: PMC7405773 DOI: 10.1016/j.meegid.2020.104493] [Citation(s) in RCA: 57] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Revised: 07/31/2020] [Accepted: 08/01/2020] [Indexed: 12/18/2022]
Abstract
The emergence of COVID-19 has triggered many works aiming at identifying the animal intermediate potentially involved in the transmission of SARS-CoV-2 to humans. The presence of SARS-CoV-2-related viruses in Malayan pangolins, in silico analysis of the ACE2 receptor polymorphism and sequence similarities between the Receptor Binding Domain (RBD) of the spike proteins of pangolin and human Sarbecoviruses led to the proposal of pangolin as intermediary. However, the binding affinity of the pangolin ACE2 receptor for SARS-CoV-2 RBD was later on reported to be low. Here, we provide evidence that the pangolin is not the intermediate animal at the origin of the human pandemic. Moreover, data available do not fit with the spillover model currently proposed for zoonotic emergence which is thus unlikely to account for this outbreak. We propose a different model to explain how SARS-CoV-2 related coronaviruses could have circulated in different species, including humans, before the emergence of COVID-19.
Collapse
Affiliation(s)
- Roger Frutos
- Cirad, UMR 17, Intertryp, Montpellier, France; IES, UMR 5214 Univ. Montpellier-CNRS, Montpellier, France.
| | - Jordi Serra-Cobo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Biodiversity Research Institute, Barcelona, Spain
| | - Tianmu Chen
- State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, Xiamen University, Xiamen, PR China
| | | |
Collapse
|
18
|
Guajardo-Leiva S, Chnaiderman J, Gaggero A, Díez B. Metagenomic Insights into the Sewage RNA Virosphere of a Large City. Viruses 2020; 12:v12091050. [PMID: 32967111 PMCID: PMC7551614 DOI: 10.3390/v12091050] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Revised: 09/08/2020] [Accepted: 09/14/2020] [Indexed: 02/06/2023] Open
Abstract
Sewage-associated viruses can cause several human and animal diseases, such as gastroenteritis, hepatitis, and respiratory infections. Therefore, their detection in wastewater can reflect current infections within the source population. To date, no viral study has been performed using the sewage of any large South American city. In this study, we used viral metagenomics to obtain a single sample snapshot of the RNA virosphere in the wastewater from Santiago de Chile, the seventh largest city in the Americas. Despite the overrepresentation of dsRNA viruses, our results show that Santiago’s sewage RNA virosphere was composed mostly of unknown sequences (88%), while known viral sequences were dominated by viruses that infect bacteria (60%), invertebrates (37%) and humans (2.4%). Interestingly, we discovered three novel genogroups within the Picobirnaviridae family that can fill major gaps in this taxa’s evolutionary history. We also demonstrated the dominance of emerging Rotavirus genotypes, such as G8 and G6, that have displaced other classical genotypes, which is consistent with recent clinical reports. This study supports the usefulness of sewage viral metagenomics for public health surveillance. Moreover, it demonstrates the need to monitor the viral component during the wastewater treatment and recycling process, where this virome can constitute a reservoir of human pathogens.
Collapse
Affiliation(s)
- Sergio Guajardo-Leiva
- Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile;
| | - Jonás Chnaiderman
- Programa de Virología, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Santiago 8380453, Chile;
| | - Aldo Gaggero
- Programa de Virología, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Santiago 8380453, Chile;
- Correspondence: (A.G.); (B.D.)
| | - Beatriz Díez
- Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile;
- Center for Climate and Resilience Research (CR)2, Santiago 8370449, Chile
- Correspondence: (A.G.); (B.D.)
| |
Collapse
|
19
|
Huong NQ, Nga NTT, Long NV, Luu BD, Latinne A, Pruvot M, Phuong NT, Quang LTV, Hung VV, Lan NT, Hoa NT, Minh PQ, Diep NT, Tung N, Ky VD, Roberton SI, Thuy HB, Long NV, Gilbert M, Wicker L, Mazet JAK, Johnson CK, Goldstein T, Tremeau-Bravard A, Ontiveros V, Joly DO, Walzer C, Fine AE, Olson SH. Coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in Viet Nam, 2013-2014. PLoS One 2020; 15:e0237129. [PMID: 32776964 PMCID: PMC7416947 DOI: 10.1371/journal.pone.0237129] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 07/20/2020] [Indexed: 12/26/2022] Open
Abstract
Outbreaks of emerging coronaviruses in the past two decades and the current pandemic of a novel coronavirus (SARS-CoV-2) that emerged in China highlight the importance of this viral family as a zoonotic public health threat. To gain a better understanding of coronavirus presence and diversity in wildlife at wildlife-human interfaces in three southern provinces in Viet Nam 2013-2014, we used consensus Polymerase Chain Reactions to detect coronavirus sequences. In comparison to previous studies, we observed high proportions of positive samples among field rats (34.0%, 239/702) destined for human consumption and insectivorous bats in guano farms (74.8%, 234/313) adjacent to human dwellings. Most notably among field rats, the odds of coronavirus RNA detection significantly increased along the supply chain from field rats sold by traders (reference group; 20.7% positivity, 39/188) by a factor of 2.2 for field rats sold in large markets (32.0%, 116/363) and 10.0 for field rats sold and served in restaurants (55.6%, 84/151). Coronaviruses were also detected in rodents on the majority of wildlife farms sampled (60.7%, 17/28). These coronaviruses were found in the Malayan porcupines (6.0%, 20/331) and bamboo rats (6.3%, 6/96) that are raised on wildlife farms for human consumption as food. We identified six known coronaviruses in bats and rodents, clustered in three Coronaviridae genera, including the Alpha-, Beta-, and Gammacoronaviruses. Our analysis also suggested either mixing of animal excreta in the environment or interspecies transmission of coronaviruses, as both bat and avian coronaviruses were detected in rodent feces on wildlife farms. The mixing of multiple coronaviruses, and their apparent amplification along the wildlife supply chain into restaurants, suggests maximal risk for end consumers and likely underpins the mechanisms of zoonotic spillover to people.
Collapse
Affiliation(s)
- Nguyen Quynh Huong
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
| | | | - Nguyen Van Long
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Ha Noi, Viet Nam
| | - Bach Duc Luu
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Ha Noi, Viet Nam
| | - Alice Latinne
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
- EcoHealth Alliance, New York, New York, United States of America
| | - Mathieu Pruvot
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
| | | | | | - Vo Van Hung
- Regional Animal Health Office No. 6, Ho Chi Minh City, Viet Nam
| | - Nguyen Thi Lan
- Faculty of Veterinary Medicine, Viet Nam National University of Agriculture, Ha Noi, Viet Nam
| | - Nguyen Thi Hoa
- Faculty of Veterinary Medicine, Viet Nam National University of Agriculture, Ha Noi, Viet Nam
| | - Phan Quang Minh
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Ha Noi, Viet Nam
| | - Nguyen Thi Diep
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Ha Noi, Viet Nam
| | - Nguyen Tung
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Ha Noi, Viet Nam
| | - Van Dang Ky
- Department of Animal Health, Ministry of Agricultural and Rural Development of Viet Nam, Ha Noi, Viet Nam
| | - Scott I. Roberton
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
| | - Hoang Bich Thuy
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
| | - Nguyen Van Long
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
| | - Martin Gilbert
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
| | - Leanne Wicker
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
| | - Jonna A. K. Mazet
- One Health Institute, School of Veterinary Medicine, University of California, Davis, California, United States of America
| | - Christine Kreuder Johnson
- One Health Institute, School of Veterinary Medicine, University of California, Davis, California, United States of America
| | - Tracey Goldstein
- One Health Institute, School of Veterinary Medicine, University of California, Davis, California, United States of America
| | - Alex Tremeau-Bravard
- One Health Institute, School of Veterinary Medicine, University of California, Davis, California, United States of America
| | - Victoria Ontiveros
- One Health Institute, School of Veterinary Medicine, University of California, Davis, California, United States of America
| | - Damien O. Joly
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
| | - Chris Walzer
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
- Research Institute of Wildlife Ecology, University of Veterinary Medicine, Vienna, Austria
| | - Amanda E. Fine
- Wildlife Conservation Society, Viet Nam Country Program, Ha Noi, Viet Nam
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
| | - Sarah H. Olson
- Wildlife Conservation Society, Health Program, Bronx, New York, United States of America
| |
Collapse
|
20
|
Yu ZM, Chen JT, Qin J, Guo JJ, Li K, Xu QY, Wang W, Lu M, Qin XC, Zhang YZ. Identification and characterization of Jingmen tick virus in rodents from Xinjiang, China. INFECTION GENETICS AND EVOLUTION 2020; 84:104411. [PMID: 32531517 PMCID: PMC7283072 DOI: 10.1016/j.meegid.2020.104411] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 05/30/2020] [Accepted: 06/05/2020] [Indexed: 11/16/2022]
Abstract
Jingmen tick virus (JMTV) is a recently identified virus which provides an unexpected connection between segmented and unsegmented RNA viruses. Recent investigations reveal that JMTV including JMTV-like virus (Alongshan virus) could be associated with human disease, suggesting the significance of JMTV in public health. To better understand the genetic diversity and host range of JMTV, a total of 164 rodents representing 8 species were collected in Qapqal Xibe county of Xinjiang Uygur Autonomous Region, China, and were screened for JMTVs using RT- PCR. Consequently, JMTV was identified in 42 rodents including 23 Microtus arvalis voles (24.5%), 9 Apodemus uralensis mice (29.0%), 5 Mus musculus mice, 1 Rhombomys opimus gerbil, 1 Meriones tamariscinus gerbil, 1 Meriones libycus gerbil, 1 Cricetulus migratorius hamster and 1 Microtus gregalis vole. Interestingly, nearly complete genome sequences were successfully recovered from 7 JMTV positive samples. Although the newly identified rodent JMTVs were closely related to those previously identified in ticks from China, based on the phylogenetic analysis of the S1, S2 and S3 segments, the newly identified rodent viruses clustered into two genetic groups. One group comprised of viruses only found in M. arvalis, while another group included viruses from A. uralensis, C. migratorius and M. gregalis. However, all rodent viruses clustered together in the S4 tree. Considering rodents live in close proximity to humans, more efforts are needed to investigate the role of rodents in the evolution and transmission of JMTV in nature. Jingmen tick virus (JMTV) was found in 8 species of rodents from Xinjiang of China. Two sub-lineages of JMTVs were co-circulating in these rodents in Xinjiang. One sub-lineage of viruses was only identified in Microtus arvalis voles. Our data indicate that rodents are one of the natural hosts of JMTV.
Collapse
Affiliation(s)
- Zhu-Mei Yu
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Jin-Tao Chen
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Jing Qin
- Yili Prefecture Center for Disease Control and Prevention, Yili 835000, China
| | - Jing-Jing Guo
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Kun Li
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Qi-Yi Xu
- Yili Prefecture Center for Disease Control and Prevention, Yili 835000, China
| | - Wen Wang
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Miao Lu
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Xin-Cheng Qin
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China
| | - Yong-Zhen Zhang
- Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping Liuzi 5, 102206 Beijing, China; Shanghai Public Health Clinical Center, Institute of Biomedical Science, Fudan University, Shanghai, China.
| |
Collapse
|
21
|
McIver DJ, Silithammavong S, Theppangna W, Gillis A, Douangngeun B, Khammavong K, Singhalath S, Duong V, Buchy P, Olson SH, Keatts L, Fine AE, Greatorex Z, Gilbert M, LeBreton M, Saylors K, Joly DO, Rubin EM, Lange CE. Coronavirus surveillance of wildlife in the Lao People's Democratic Republic detects viral RNA in rodents. Arch Virol 2020; 165:1869-1875. [PMID: 32488616 PMCID: PMC7265875 DOI: 10.1007/s00705-020-04683-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 04/27/2020] [Indexed: 12/16/2022]
Abstract
Coronaviruses can become zoonotic, as in the case of COVID-19, and hunting, sale, and consumption of wild animals in Southeast Asia increases the risk for such incidents. We sampled and tested rodents (851) and other mammals and found betacoronavirus RNA in 12 rodents. The sequences belong to two separate genetic clusters and are closely related to those of known rodent coronaviruses detected in the region and distantly related to those of human coronaviruses OC43 and HKU1. Considering the close human-wildlife contact with many species in and beyond the region, a better understanding of virus diversity is urgently needed for the mitigation of future risks.
Collapse
Affiliation(s)
| | - Soubanh Silithammavong
- Wildlife Conservation Society, Laos Program, Vientiane, Lao PDR.,Metabiota Inc., San Francisco, CA, USA
| | - Watthana Theppangna
- Department of Livestock and Fisheries, National Animal Health Laboratory, Vientiane, Lao PDR
| | - Amethyst Gillis
- Metabiota Inc., San Francisco, CA, USA.,Development Alternatives, Inc., Washington, DC, USA
| | - Bounlom Douangngeun
- Department of Livestock and Fisheries, National Animal Health Laboratory, Vientiane, Lao PDR
| | | | | | - Veasna Duong
- Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia
| | - Philippe Buchy
- Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.,GlaxoSmithKline Vaccines R&D, Greater China and Intercontinental, Shanghai, China
| | - Sarah H Olson
- Wildlife Conservation Society, Health Program, Bronx, NY, USA
| | - Lucy Keatts
- Wildlife Conservation Society, Health Program, Bronx, NY, USA
| | - Amanda E Fine
- Wildlife Conservation Society, Health Program, Bronx, NY, USA
| | - Zoe Greatorex
- Wildlife Conservation Society, Health Program, Bronx, NY, USA
| | - Martin Gilbert
- Wildlife Conservation Society, Health Program, Bronx, NY, USA
| | | | - Karen Saylors
- Metabiota Inc., San Francisco, CA, USA.,Labyrinth Global Health, Inc., St. Petersburg, FL, USA
| | - Damien O Joly
- Metabiota Inc., Nanaimo, BC, Canada.,Wildlife Conservation Society, Laos Program, Vientiane, Lao PDR.,British Columbia Ministry of Environment and Climate Change Strategy, Victoria, BC, Canada
| | | | | |
Collapse
|
22
|
Meat consumption: Which are the current global risks? A review of recent (2010-2020) evidences. Food Res Int 2020; 137:109341. [PMID: 33233049 PMCID: PMC7256495 DOI: 10.1016/j.foodres.2020.109341] [Citation(s) in RCA: 90] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 05/10/2020] [Accepted: 05/17/2020] [Indexed: 12/29/2022]
Abstract
Consumption of fatty meats may increase risks of cardiovascular diseases and cancer. Production of red meats increases greenhouse gases (GHG) emissions contributing to the global warming. Consumption of wild meats can pose some serious risks of transmission of viruses from animals to humans.
Meat consumption has been increasing since the 1960s, but especially from the 1980s decade to today. Although meat means an important source of nutrients, it is also evident that a great consumption of this source of proteins has also a negative environmental impact. Livestock production does not only have a negative influence on GHG emissions, but also on the water footprint, water pollution, and water scarcity. With respect to human health, in 2015 the International Agency for Research on Cancer (IARC) stated that red meat was a probable carcinogen to humans (Group 2A), while consumption of processed meat was carcinogenic to humans (Group 1). Most environmental contaminants (PCDD/Fs, PCBs, PBDEs, PCNs, etc.) that are frequently found in meats are highly soluble in fats. Therefore, avoiding ingesting fats from red meats and meat products, doubtless would help in the prevention, not only of the well-known cardiovascular diseases derived of fats consumption, but also of certain kinds of cancers, mainly colorectal cancer. On the other hand, consumption of meat – especially wild meat – is related to virus infections, as many viruses have been found in wild meat trade markets. Based on the scientific literature here reviewed, we have noted that the results of the investigations conducted after the statement of the IARC, have corroborated the recommendation of reducing significantly the consumption of red meats and meat products. In turn, the reduction of meat consumption should contribute to the reduction of GHG emissions and their considerable impact on global warming and climate change. It seems evident that human dietary habits regarding meat consumption in general, and red meats and wild meats in particular, should be significantly modified downward, as much and as soon as possible.
Collapse
|
23
|
Obbard DJ. Expansion of the metazoan virosphere: progress, pitfalls, and prospects. Curr Opin Virol 2018; 31:17-23. [PMID: 30237139 DOI: 10.1016/j.coviro.2018.08.008] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Revised: 07/15/2018] [Accepted: 08/17/2018] [Indexed: 12/22/2022]
Abstract
Metagenomic sequencing has led to a recent and rapid expansion of the animal virome. It has uncovered a multitude of new virus lineages from under-sampled host groups, including many that break up long branches in the virus tree, and many that display unexpected genome sizes and structures. Although there are challenges to inferring the existence of a virus from a `virus-like sequence', in the absence of an isolate the analysis of nucleic acid (including small RNAs) and sequence data can provide considerable confidence. As a consequence, this period of molecular natural history is helping to reshape our views of deep virus evolution.
Collapse
Affiliation(s)
- Darren J Obbard
- Institute of Evolutionary Biology, and Centre for Immunity, Infection and Evolution, The University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, United Kingdom.
| |
Collapse
|
24
|
Afelt A, Frutos R, Devaux C. Bats, Coronaviruses, and Deforestation: Toward the Emergence of Novel Infectious Diseases? Front Microbiol 2018; 9:702. [PMID: 29696007 PMCID: PMC5904276 DOI: 10.3389/fmicb.2018.00702] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 03/26/2018] [Indexed: 12/22/2022] Open
Affiliation(s)
- Aneta Afelt
- Interdisciplinary Center for Mathematical and Computational Modelling, University of Warsaw, Warsaw, Poland
| | - Roger Frutos
- IES, Univ. Montpellier, CNRS, Montpellier, France.,Cirad, UMR 17, Intertryp, Montpellier, France
| | - Christian Devaux
- Aix Marseille Université, Centre National de la Recherche Scientifique, IRD, Institut National de la Santé et de la Recherche Médicale, AP-HM, URMITE, IHU-Méditerranée Infection, Marseille, France
| |
Collapse
|
25
|
Van Nguyen D, Van Nguyen C, Bonsall D, Ngo TT, Carrique-Mas J, Pham AH, Bryant JE, Thwaites G, Baker S, Woolhouse M, Simmonds P. Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam. Viruses 2018; 10:v10030102. [PMID: 29495551 PMCID: PMC5869495 DOI: 10.3390/v10030102] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2018] [Revised: 02/19/2018] [Accepted: 02/23/2018] [Indexed: 12/20/2022] Open
Abstract
Rodents and bats are now widely recognised as important sources of zoonotic virus infections in other mammals, including humans. Numerous surveys have expanded our knowledge of diverse viruses in a range of rodent and bat species, including their origins, evolution, and range of hosts. In this study of pegivirus and human hepatitis-related viruses, liver and serum samples from Vietnamese rodents and bats were examined by PCR and sequencing. Nucleic acids homologous to human hepatitis B, C, E viruses were detected in liver samples of 2 (1.3%) of 157 bats, 38 (8.1%), and 14 (3%) of 470 rodents, respectively. Hepacivirus-like viruses were frequently detected (42.7%) in the bamboo rat, Rhizomys pruinosus, while pegivirus RNA was only evident in 2 (0.3%) of 638 rodent serum samples. Complete or near-complete genome sequences of HBV, HEV and pegivirus homologues closely resembled those previously reported from rodents and bats. However, complete coding region sequences of the rodent hepacivirus-like viruses substantially diverged from all of the currently classified variants and potentially represent a new species in the Hepacivirus genus. Of the viruses identified, their routes of transmission and potential to establish zoonoses remain to be determined.
Collapse
MESH Headings
- Animals
- Chiroptera/virology
- Genome, Viral
- Hepatitis Viruses/classification
- Hepatitis Viruses/genetics
- Hepatitis, Viral, Animal/diagnosis
- Hepatitis, Viral, Animal/epidemiology
- Hepatitis, Viral, Animal/virology
- Hepatitis, Viral, Human/diagnosis
- Hepatitis, Viral, Human/epidemiology
- Hepatitis, Viral, Human/virology
- Humans
- Phylogeny
- Public Health Surveillance
- RNA, Viral
- Rodentia/virology
- Vietnam/epidemiology
- Zoonoses/epidemiology
- Zoonoses/virology
Collapse
Affiliation(s)
- Dung Van Nguyen
- Nuffield Department of Medicine, University of Oxford, Oxford OX1 3SY, UK.
| | - Cuong Van Nguyen
- Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City 700000, Vietnam.
| | - David Bonsall
- Nuffield Department of Medicine, University of Oxford, Oxford OX1 3SY, UK.
| | - Tue Tri Ngo
- Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City 700000, Vietnam.
| | - Juan Carrique-Mas
- Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City 700000, Vietnam.
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, Oxford University, Oxford OX3 7FZ, UK.
| | - Anh Hong Pham
- Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City 700000, Vietnam.
| | - Juliet E Bryant
- Fondation Mérieux, Centre International de Recherche en Infectiologie (CIRI), 69365 Lyon CEDEX 07, France.
| | - Guy Thwaites
- Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City 700000, Vietnam.
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, Oxford University, Oxford OX3 7FZ, UK.
| | - Stephen Baker
- Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City 700000, Vietnam.
- Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, Oxford University, Oxford OX3 7FZ, UK.
- The London School of Hygiene & Tropical Medicine, London WC1E 7HT, UK.
| | - Mark Woolhouse
- Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh EH9 3FL, UK.
| | - Peter Simmonds
- Nuffield Department of Medicine, University of Oxford, Oxford OX1 3SY, UK.
| |
Collapse
|
26
|
Berto A, Anh PH, Carrique‐Mas JJ, Simmonds P, Van Cuong N, Tue NT, Van Dung N, Woolhouse ME, Smith I, Marsh GA, Bryant JE, Thwaites GE, Baker S, Rabaa MA. Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam. Zoonoses Public Health 2018; 65:30-42. [PMID: 28418192 PMCID: PMC5811810 DOI: 10.1111/zph.12362] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Indexed: 11/30/2022]
Abstract
Bats and rodents are being increasingly recognized as reservoirs of emerging zoonotic viruses. Various studies have investigated bat viruses in tropical regions, but to date there are no data regarding viruses with zoonotic potential that circulate in bat and rat populations in Viet Nam. To address this paucity of data, we sampled three bat farms and three wet markets trading in rat meat in the Mekong Delta region of southern Viet Nam. Faecal and urine samples were screened for the presence of RNA from paramyxoviruses, coronaviruses and filoviruses. Paramyxovirus RNA was detected in 4 of 248 (1%) and 11 of 222 (4.9%) bat faecal and urine samples, respectively. Coronavirus RNA was detected in 55 of 248 (22%) of bat faecal samples; filovirus RNA was not detected in any of the bat samples. Further, coronavirus RNA was detected in 12 of 270 (4.4%) of rat faecal samples; all samples tested negative for paramyxovirus. Phylogenetic analysis revealed that the bat paramyxoviruses and bat and rat coronaviruses were related to viruses circulating in bat and rodent populations globally, but showed no cross-species mixing of viruses between bat and rat populations within Viet Nam. Our study shows that potentially novel variants of paramyxoviruses and coronaviruses commonly circulate in bat and rat populations in Viet Nam. Further characterization of the viruses and additional human and animal surveillance is required to evaluate the likelihood of viral spillover and to assess whether these viruses pose a risk to human health.
Collapse
Affiliation(s)
- A. Berto
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
| | - P. H. Anh
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
| | - J. J. Carrique‐Mas
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
- Centre for Tropical MedicineNuffield Department of Clinical MedicineOxford UniversityOxfordUK
| | - P. Simmonds
- Nuffield Department of Clinical MedicineUniversity of OxfordOxfordUK
| | - N. Van Cuong
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
| | - N. T. Tue
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
| | - N. Van Dung
- Nuffield Department of Clinical MedicineUniversity of OxfordOxfordUK
| | - M. E. Woolhouse
- Centre for Immunity, Infection & EvolutionThe University of EdinburghEdinburghUK
| | - I. Smith
- Health and BiosecurityCSIRO, Australian Animal Health LaboratoryGeelongVic.Australia
| | - G. A. Marsh
- Health and BiosecurityCSIRO, Australian Animal Health LaboratoryGeelongVic.Australia
| | - J. E. Bryant
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
- Centre for Tropical MedicineNuffield Department of Clinical MedicineOxford UniversityOxfordUK
| | - G. E. Thwaites
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
- Centre for Tropical MedicineNuffield Department of Clinical MedicineOxford UniversityOxfordUK
| | - S. Baker
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
- Centre for Tropical MedicineNuffield Department of Clinical MedicineOxford UniversityOxfordUK
- The London School of Hygiene and Tropical MedicineLondonUK
| | - M. A. Rabaa
- Wellcome Trust Major Overseas ProgrammeOxford University Clinical Research UnitHo Chi Minh CityViet Nam
- Centre for Tropical MedicineNuffield Department of Clinical MedicineOxford UniversityOxfordUK
| | | |
Collapse
|
27
|
Drewes S, Straková P, Drexler JF, Jacob J, Ulrich RG. Assessing the Diversity of Rodent-Borne Viruses: Exploring of High-Throughput Sequencing and Classical Amplification/Sequencing Approaches. Adv Virus Res 2017; 99:61-108. [PMID: 29029730 DOI: 10.1016/bs.aivir.2017.08.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Rodents are distributed throughout the world and interact with humans in many ways. They provide vital ecosystem services, some species are useful models in biomedical research and some are held as pet animals. However, many rodent species can have adverse effects such as damage to crops and stored produce, and they are of health concern because of the transmission of pathogens to humans and livestock. The first rodent viruses were discovered by isolation approaches and resulted in break-through knowledge in immunology, molecular and cell biology, and cancer research. In addition to rodent-specific viruses, rodent-borne viruses are causing a large number of zoonotic diseases. Most prominent examples are reemerging outbreaks of human hemorrhagic fever disease cases caused by arena- and hantaviruses. In addition, rodents are reservoirs for vector-borne pathogens, such as tick-borne encephalitis virus and Borrelia spp., and may carry human pathogenic agents, but likely are not involved in their transmission to human. In our days, next-generation sequencing or high-throughput sequencing (HTS) is revolutionizing the speed of the discovery of novel viruses, but other molecular approaches, such as generic RT-PCR/PCR and rolling circle amplification techniques, contribute significantly to the rapidly ongoing process. However, the current knowledge still represents only the tip of the iceberg, when comparing the known human viruses to those known for rodents, the mammalian taxon with the largest species number. The diagnostic potential of HTS-based metagenomic approaches is illustrated by their use in the discovery and complete genome determination of novel borna- and adenoviruses as causative disease agents in squirrels. In conclusion, HTS, in combination with conventional RT-PCR/PCR-based approaches, resulted in a drastically increased knowledge of the diversity of rodent viruses. Future improvements of the used workflows, including bioinformatics analysis, will further enhance our knowledge and preparedness in case of the emergence of novel viruses. Classical virological and additional molecular approaches are needed for genome annotation and functional characterization of novel viruses, discovered by these technologies, and evaluation of their zoonotic potential.
Collapse
Affiliation(s)
- Stephan Drewes
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Petra Straková
- Institute of Vertebrate Biology v.v.i., Academy of Sciences, Brno, Czech Republic
| | - Jan F Drexler
- Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Virology, Berlin, Germany; German Center for Infection Research (DZIF), Germany
| | - Jens Jacob
- Julius Kühn-Institute, Federal Research Centre for Cultivated Plants, Institute for Plant Protection in Horticulture and Forests, Vertebrate Research, Münster, Germany
| | - Rainer G Ulrich
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany; German Center for Infection Research (DZIF), Partner site Hamburg-Luebeck-Borstel-Insel Riems, Greifswald-Insel Riems, Germany.
| |
Collapse
|