• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (5090193)   Today's Articles (7542)
For: Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Gregory Caporaso J. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin. Microbiome 2018;6:90. [PMID: 29773078 PMCID: PMC5956843 DOI: 10.1186/s40168-018-0470-z] [Citation(s) in RCA: 3002] [Impact Index Per Article: 428.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Number Cited by Other Article(s)
1
Katona BW, Shukla A, Hu W, Nyul T, Dudzik C, Arvanitis A, Clay D, Dungan M, Weber M, Tu V, Hao F, Gan S, Chau L, Buchner AM, Falk GW, Jaffe DL, Ginsberg G, Palmer SN, Zhan X, Patterson AD, Bittinger K, Ni J. Microbiota and metabolite-based prediction tool for colonic polyposis with and without a known genetic driver. Gut Microbes 2025;17:2474141. [PMID: 40069167 PMCID: PMC11913376 DOI: 10.1080/19490976.2025.2474141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Revised: 01/22/2025] [Accepted: 02/25/2025] [Indexed: 03/19/2025]  Open
2
Organski AC, Rajwa B, Reddivari A, Jorgensen JS, Cross TWL. Gut microbiome-driven regulation of sex hormone homeostasis: a potential neuroendocrine connection. Gut Microbes 2025;17:2476562. [PMID: 40071861 PMCID: PMC11913384 DOI: 10.1080/19490976.2025.2476562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/02/2024] [Revised: 12/17/2024] [Accepted: 03/03/2025] [Indexed: 03/19/2025]  Open
3
Zhang W, Xiong W, Wang M, Zhao D, Guo X, Zhan A. Vertical exchange versus horizontal dispersal in structuring local planktonic and sedimentary bacterial communities in polluted lotic ecosystems. J Environ Sci (China) 2025;156:859-870. [PMID: 40412982 DOI: 10.1016/j.jes.2024.10.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 10/22/2024] [Accepted: 10/30/2024] [Indexed: 05/27/2025]
4
Chang VC, Purandare V, Li S, Andreotti G, Hua X, Wan Y, Dagnall CL, Jones K, Hicks BD, Hutchinson A, Yano Y, Dalton KR, Lee M, Parks CG, London SJ, Sandler DP, Gail MH, Shi J, Hofmann JN, Sinha R, Abnet CC, Vogtmann E, Beane Freeman LE. Animal farming and the oral microbiome in the Agricultural Health Study. ENVIRONMENTAL RESEARCH 2025;281:121964. [PMID: 40436194 DOI: 10.1016/j.envres.2025.121964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 05/08/2025] [Accepted: 05/24/2025] [Indexed: 06/11/2025]
5
Peng Q, Zhou H, Zheng H, Xie G. Investigating the role of primary fungi in Huangjiu fermentation: Insights from flavor orientation and synthetic microbiomes. Food Microbiol 2025;129:104765. [PMID: 40086991 DOI: 10.1016/j.fm.2025.104765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 02/16/2025] [Accepted: 03/03/2025] [Indexed: 03/16/2025]
6
Li B, Liang C, Xu B, Song P, Liu D, Zhang J, Gu H, Jiang F, Gao H, Cai Z, Zhang T. Extreme winter environment dominates gut microbiota and metabolome of white-lipped deer. Microbiol Res 2025;297:128182. [PMID: 40252261 DOI: 10.1016/j.micres.2025.128182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Revised: 03/23/2025] [Accepted: 04/10/2025] [Indexed: 04/21/2025]
7
Smirnova AV, Verbeke TJ, Furgason CC, Albakistani EA, Nwosu FC, Kim JJ, Haupt ES, Sheremet A, Lee ES, Trang E, Richardson E, Dacks JB, Dunfield PF. Microbial community development in an oil sands pit lake. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025;987:179764. [PMID: 40460542 DOI: 10.1016/j.scitotenv.2025.179764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2025] [Revised: 05/06/2025] [Accepted: 05/24/2025] [Indexed: 06/16/2025]
8
Liu J, Xu G, Zhao S, He J. Microbiomes of coastal sediments and plastispheres shaped by microplastics and decabrominated diphenyl ether. WATER RESEARCH 2025;280:123417. [PMID: 40112457 DOI: 10.1016/j.watres.2025.123417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Revised: 01/25/2025] [Accepted: 02/28/2025] [Indexed: 03/22/2025]
9
Deng B, Ren Z, Li Q, Zhang Z, Xu C, Wang P, Zhao H, Yuan Q. Black soldier fly larvae mediate Zinc and Chromium transformation through the ZnuCBA and citric acid cycle system. WATER RESEARCH 2025;280:123483. [PMID: 40090144 DOI: 10.1016/j.watres.2025.123483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 03/09/2025] [Accepted: 03/11/2025] [Indexed: 03/18/2025]
10
Peng H, Zhang Z, Kang X, Zhang Y, Zhang H, Wang Y, Yang D, Zhang J, Wang Y, Cui L, Zhu YG, Ju F. Unveiling gut microbiota and metabolic functions contributed to polyvinyl chloride degradation in Spodoptera frugiperda larvae. JOURNAL OF HAZARDOUS MATERIALS 2025;492:138209. [PMID: 40222058 DOI: 10.1016/j.jhazmat.2025.138209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 04/04/2025] [Accepted: 04/06/2025] [Indexed: 04/15/2025]
11
Tao M, Ke X, Ma J, Liu L, Qiu Y, Hu Z, Liu F. Dissolved organic matter (DOM) - Driven variations of cadmium mobility and bioavailability in waterlogged paddy soil. JOURNAL OF HAZARDOUS MATERIALS 2025;492:138065. [PMID: 40158508 DOI: 10.1016/j.jhazmat.2025.138065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Revised: 03/20/2025] [Accepted: 03/23/2025] [Indexed: 04/02/2025]
12
Zhao X, Chen A, Gong X, Zhang P, Cui K, Li S, Zhang W, Zhu C, Gang H, Huo J, Xie F, Qin D. Metabolite-mediated responses of phyllosphere microbiota to powdery mildew infection in resistant and susceptible black currant cultivars. HORTICULTURE RESEARCH 2025;12:uhaf092. [PMID: 40371437 PMCID: PMC12077297 DOI: 10.1093/hr/uhaf092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Accepted: 03/18/2025] [Indexed: 05/16/2025]
13
Zhang J, Zhang Q, Zhang C, Wang R, Wang H, Zheng P. Vegetation succession enhances microbial diversity, network complexity, and stability in coastal wetlands, underscoring the pivotal role of soil salinity and key microbial species. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025;388:125997. [PMID: 40446786 DOI: 10.1016/j.jenvman.2025.125997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2025] [Revised: 05/15/2025] [Accepted: 05/25/2025] [Indexed: 06/16/2025]
14
Jiang T, Ren J, Li D, Luo Y, Huang Y, Gao T, Yang J, Yu J, Liu L, Yuan H. Pseudomonas syringae exacerbates apple replant disease caused by Fusarium. Microbiol Res 2025;296:128124. [PMID: 40054134 DOI: 10.1016/j.micres.2025.128124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 02/14/2025] [Accepted: 02/24/2025] [Indexed: 04/10/2025]
15
Temovska M, Hegner R, Ortiz-Ardila AE, Usack JG, Angenent LT. Lactate production from lactose-rich wastewater: A comparative study on reactor configurations to maximize conversion rates and efficiencies. WATER RESEARCH 2025;278:123365. [PMID: 40022799 DOI: 10.1016/j.watres.2025.123365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 02/13/2025] [Accepted: 02/21/2025] [Indexed: 03/04/2025]
16
Hrabar J, Babić I, Jozić S, Trumbić Ž, Pioppi A, Nielsen LJD, Maravić A, Tomašević T, Kovacs ÁT, Mladineo I. Prospecting microbiota of Adriatic fish: Bacillus velezensis as a potential probiotic candidate. Anim Microbiome 2025;7:64. [PMID: 40517265 DOI: 10.1186/s42523-025-00429-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Accepted: 05/24/2025] [Indexed: 06/16/2025]  Open
17
Edwin NR, Duff A, Deveautour C, Brennan F, Abram F, O'Sullivan O. Consistent microbial insights across sequencing methods in soil studies: the role of reference taxonomies. mSystems 2025:e0105924. [PMID: 40492742 DOI: 10.1128/msystems.01059-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 05/12/2025] [Indexed: 06/12/2025]  Open
18
Nash J, Looney B, Cregger MA, Schadt C, Vilgalys R. Dual-mycorrhizal colonization is determined by plant age and host identity in two species of Populus. MYCORRHIZA 2025;35:42. [PMID: 40490518 DOI: 10.1007/s00572-025-01215-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2025] [Accepted: 05/28/2025] [Indexed: 06/11/2025]
19
Babalola OO, Osuji IE, Akanmu AO. Amplicon-based metagenomic survey of microbes associated with the organic and inorganic rhizosphere soil of Glycine max L. BMC Genom Data 2025;26:40. [PMID: 40481438 PMCID: PMC12142974 DOI: 10.1186/s12863-025-01333-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2025] [Accepted: 05/23/2025] [Indexed: 06/11/2025]  Open
20
Zhou X, Xiao C, Zhang B, Yang X. Depth-dependent response of soil microbial community and greenhouse gas efflux to polylactic acid microplastics and tidal cycles in a mangrove ecosystem. JOURNAL OF HAZARDOUS MATERIALS 2025;489:137664. [PMID: 39987736 DOI: 10.1016/j.jhazmat.2025.137664] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Revised: 01/28/2025] [Accepted: 02/17/2025] [Indexed: 02/25/2025]
21
Suzuki Y, Ishioka K, Nakamura T, Miyazaki N, Marubashi S, Suzutani T. Function of Yogurt Fermented with the Lactococcus lactis 11/19-B1 Strain in Improving the Lipid Profile and Intestinal Microbiome in Hemodialysis Patients. Nutrients 2025;17:1931. [PMID: 40507200 PMCID: PMC12157043 DOI: 10.3390/nu17111931] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2025] [Revised: 05/23/2025] [Accepted: 05/28/2025] [Indexed: 06/16/2025]  Open
22
Barrena-González J, Lloret E, Zornoza R, Lavado-Contador F, Pulido M. Spatial patterns of soil bacterial communities in grazing areas of Southwest Spain. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025;979:179516. [PMID: 40280101 DOI: 10.1016/j.scitotenv.2025.179516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2025] [Revised: 03/31/2025] [Accepted: 04/22/2025] [Indexed: 04/29/2025]
23
Chen B, Zeng Y, Wang J, Lei M, Gan B, Wan Z, Wu L, Luo G, Cao S, An T, Zhang Q, Pan K, Jing B, Ni X, Zeng D. Targeted Screening of Fiber Degrading Bacteria with Probiotic Function in Herbivore Feces. Probiotics Antimicrob Proteins 2025;17:1473-1497. [PMID: 38300451 DOI: 10.1007/s12602-024-10215-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/04/2024] [Indexed: 02/02/2024]
24
Shi Z, Zeng W, Liu Z, Yao F, Guo J, Chen Y, Qin Z, Zhang J. Invasive apple snails with their core microbes are underestimated hotspots for disseminating antibiotic resistance genes and virulence factors in aquatic habitats. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025;385:125575. [PMID: 40339249 DOI: 10.1016/j.jenvman.2025.125575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Revised: 03/19/2025] [Accepted: 04/26/2025] [Indexed: 05/10/2025]
25
Liu H, Xu T, Ye W, Li Y, He K, Zhu Y, Zou X, Ruan H. Urbanisation Affects Millipede Gut Microbiota Communities by Impeding Host Gene Flow. Mol Ecol 2025;34:e17792. [PMID: 40347019 DOI: 10.1111/mec.17792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2024] [Revised: 04/11/2025] [Accepted: 04/28/2025] [Indexed: 05/12/2025]
26
Liu Y, Niu Y, Zhou Z, Ma Y, Chen M, Xu N, Zhao F, Sun Y, Chen P. Insight into endophytic microbiota-driven geographical and bioactive signatures toward a novel quality assessment model for Codonopsis Radix. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025;223:109888. [PMID: 40203555 DOI: 10.1016/j.plaphy.2025.109888] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2024] [Revised: 04/02/2025] [Accepted: 04/04/2025] [Indexed: 04/11/2025]
27
Plokhovska S, García-Villaraco A, Lucas JA, Gutiérrez-Mañero FJ, Ramos-Solano B. Pseudomonas sp. N5.12 Metabolites Formulated in AgNPs Enhance Plant Fitness and Metabolism Without Altering Soil Microbial Communities. PLANTS (BASEL, SWITZERLAND) 2025;14:1655. [PMID: 40508329 PMCID: PMC12157261 DOI: 10.3390/plants14111655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/26/2025] [Revised: 05/23/2025] [Accepted: 05/26/2025] [Indexed: 06/16/2025]
28
Nieves-Morales R, Paez-Diaz JA, Rodriguez-Carrio SM, Melendez Martinez G, Rivera-Lopez EO, Rodríguez-Ramos J, García-Arrarás JE, Rios-Velazquez C. Intestinal microbiome profile of the brown rock sea cucumber (Holothuria glaberrima) using ITS and 16S rDNA amplicons from direct mechanical, enzymatic, and chemical metagenomic extraction. Microbiol Resour Announc 2025:e0029325. [PMID: 40434086 DOI: 10.1128/mra.00293-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2025] [Accepted: 05/07/2025] [Indexed: 05/29/2025]  Open
29
Lutsiv T, Fitzgerald VK, Neil ES, McGinley JN, Hussan H, Thompson HJ. Cooked Bean (Phaseolus vulgaris L.) Consumption Alters Bile Acid Metabolism in a Mouse Model of Diet-Induced Metabolic Dysfunction: Proof-of-Concept Investigation. Nutrients 2025;17:1827. [PMID: 40507096 PMCID: PMC12157300 DOI: 10.3390/nu17111827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2025] [Revised: 05/22/2025] [Accepted: 05/26/2025] [Indexed: 06/16/2025]  Open
30
Mezhibovsky E, Wu G, Wu Y, Ning Z, Bacalia K, Sadangi S, Patel R, Poulev A, Duran RM, Macor M, Coyle S, Lam YY, Raskin I, Figeys D, Zhao L, Roopchand DE. Grape polyphenols reduce fasting glucose and increase hyocholic acid in healthy humans: a meta-omics study. NPJ Sci Food 2025;9:87. [PMID: 40425565 PMCID: PMC12116990 DOI: 10.1038/s41538-025-00443-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2024] [Accepted: 05/06/2025] [Indexed: 05/29/2025]  Open
31
Castaneda A, Indugu N, Lenker K, Narayan K, Rassler S, Bender J, Baker L, Purandare O, Chai D, Zhao X, Pitta D. Host-specific microbiome-rumination interactions shape methane-yield phenotypes in dairy cattle. mSphere 2025;10:e0009025. [PMID: 40277354 DOI: 10.1128/msphere.00090-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Accepted: 03/31/2025] [Indexed: 04/26/2025]  Open
32
Benbrik B, Reid TE, Nkir D, Chaouki H, Aallam Y, Clark IM, Mauchline TH, Harris J, Pawlett M, Barakat A, Rchiad Z, Bargaz A. Unlocking the agro-physiological potential of wheat rhizoplane fungi under low P conditions using a niche-conserved consortium approach. JOURNAL OF EXPERIMENTAL BOTANY 2025;76:2320-2337. [PMID: 40000427 DOI: 10.1093/jxb/eraf042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 01/30/2025] [Indexed: 02/27/2025]
33
Oz A, Mairesse O, Raikin S, Hanani H, Mor H, Dafny Yelin M, Sharon I. Pear flower and leaf microbiome dynamics during the naturally occurring spread of Erwinia amylovora. mSphere 2025;10:e0001125. [PMID: 40323108 DOI: 10.1128/msphere.00011-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2025] [Accepted: 04/08/2025] [Indexed: 05/28/2025]  Open
34
Ávila-Cervantes R, González-Pech P, Sandoval-Castro C, Torres-Acosta F, Ramos-Zapata J, Galicia-Jiménez M, Pacheco-Arjona R. Effects of Grazing in a Low Deciduous Forest on Rumen Microbiota and Volatile Fatty Acid Production in Lambs. Animals (Basel) 2025;15:1565. [PMID: 40509031 PMCID: PMC12153761 DOI: 10.3390/ani15111565] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2025] [Revised: 05/10/2025] [Accepted: 05/13/2025] [Indexed: 06/16/2025]  Open
35
Jimenez NR, Herman CR, Łaniewski P, Cope E, Lee K, Mahnert ND, Chase DM, Caporaso JG, Herbst-Kralovetz MM. Navigating complexities of polymorphic microbiomes in endometrial cancer. NPJ Biofilms Microbiomes 2025;11:85. [PMID: 40404643 PMCID: PMC12098703 DOI: 10.1038/s41522-025-00690-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 04/01/2025] [Indexed: 05/24/2025]  Open
36
Nieves-Morales R, Paez-Diaz JA, Rivera-Lopez EO, Pérez-Santos N, Borrero-Villabol SJ, Rodríguez-Ramos J, Nieves-Rivera AM, Rios-Velazquez C. Characterization of fungal communities in Puerto Rican caves using internal transcribed spacer sequencing. Microbiol Resour Announc 2025:e0002225. [PMID: 40401940 DOI: 10.1128/mra.00022-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2025] [Accepted: 04/22/2025] [Indexed: 05/23/2025]  Open
37
Olimi E, Duller M, Stangl M, Bickel S, Battisti A, Kusstatscher P, Wicaksono WA, Abdelfattah A, Cernava T, Berg G. Plant microbiome responses to bioinoculants and volatiles. ENVIRONMENTAL MICROBIOME 2025;20:55. [PMID: 40400031 PMCID: PMC12096642 DOI: 10.1186/s40793-025-00715-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2025] [Accepted: 04/24/2025] [Indexed: 05/23/2025]
38
Smahajcsik D, Roager L, Strube ML, Zhang SD, Gram L. Stronger together: harnessing natural algal communities as potential probiotics for inhibition of aquaculture pathogens. Microbiol Spectr 2025:e0042125. [PMID: 40396728 DOI: 10.1128/spectrum.00421-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Accepted: 03/22/2025] [Indexed: 05/22/2025]  Open
39
Mori-Bazzano L, Nguyen NHA, Sevcu A, Riha J, Fu T, Slaveykova VI, Ibelings BW. Plastic degradation in Lake Geneva: Influence of depth, seasonal shifts, and bacterial community dynamics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2025;983:179615. [PMID: 40398166 DOI: 10.1016/j.scitotenv.2025.179615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2025] [Revised: 04/24/2025] [Accepted: 05/05/2025] [Indexed: 05/23/2025]
40
Uchijima T, Kato S, Tanimoto K, Shiraishi F, Hamamura N, Tokunaga K, Makita H, Kondo M, Ohkuma M, Mitsunobu S. Custom-made medium approach for effective enrichment and isolation of chemolithotrophic iron-oxidizing bacteria. FEMS Microbiol Ecol 2025;101:fiaf051. [PMID: 40328454 PMCID: PMC12089753 DOI: 10.1093/femsec/fiaf051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2024] [Revised: 03/29/2025] [Accepted: 05/02/2025] [Indexed: 05/08/2025]  Open
41
Zhang C, Bosma TNP, Atashgahi S, Smidt H. Genome-resolved transcriptomics reveals novel PCE-dehalogenating bacteria from Aarhus Bay sediments. mSystems 2025;10:e0150324. [PMID: 40237482 PMCID: PMC12090745 DOI: 10.1128/msystems.01503-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Accepted: 03/20/2025] [Indexed: 04/18/2025]  Open
42
Wang J, Su X, Zhang C, Han Z, Wang M. Biodegradation of Benzo(a)pyrene in Contaminated Soil: Plant and Microorganism Contributions from Isotope Tracing. TOXICS 2025;13:405. [PMID: 40423484 DOI: 10.3390/toxics13050405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2025] [Revised: 05/12/2025] [Accepted: 05/13/2025] [Indexed: 05/28/2025]
43
Jiang H, Zhou C, Liang Z, Wu W, Ahmed T, Gao Q, Liao M, Cao H. Serratia marcescens Sm85 produces dimethyl disulfide defense against rice sheath blight and effects on phyllosphere bacterial community. PEST MANAGEMENT SCIENCE 2025. [PMID: 40370113 DOI: 10.1002/ps.8853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 02/18/2025] [Accepted: 04/09/2025] [Indexed: 05/16/2025]
44
Castaño-Jiménez PA, Baltazar-Díaz TA, González-Hernández LA, García-Salcido R, Klimov-Kravtchenko K, Andrade-Villanueva JF, Arellano-Arteaga KJ, Padilla-Sánchez MP, Del Toro-Arreola S, Bueno-Topete MR. Deciphering the Language of Intestinal Microbiota Associated with Sepsis, Organ Failure, and Mortality in Patients with Alcohol-Related Acute-on-Chronic Liver Failure (ACLF): A Pioneer Study in Latin America. Microorganisms 2025;13:1138. [PMID: 40431310 PMCID: PMC12113797 DOI: 10.3390/microorganisms13051138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2025] [Revised: 05/05/2025] [Accepted: 05/10/2025] [Indexed: 05/29/2025]  Open
45
Bressa C, González-Soltero R, Tabone M, Clemente-Velasco S, Gálvez BG, Larrosa M. Exploring the relationship between APOEε4 allele and gut microbiota composition and function in healthy adults. AMB Express 2025;15:77. [PMID: 40372527 PMCID: PMC12081816 DOI: 10.1186/s13568-025-01888-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2025] [Accepted: 05/06/2025] [Indexed: 05/16/2025]  Open
46
Argenta N, Clark KF. Shell bacterial community dynamics suggest that American lobster (Homarus americanus) impoundment shell disease is caused by a dysbiosis. J Invertebr Pathol 2025;211:108355. [PMID: 40379204 DOI: 10.1016/j.jip.2025.108355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2025] [Revised: 05/05/2025] [Accepted: 05/12/2025] [Indexed: 05/19/2025]
47
Shevchenko AY, Ursalov GI, Eromasova NI, Shelyakin PV, Gelfand MS, Tutukina MN, Abramov AA, Vishnivetskaya TA, Rivkina EM. Microbial diversity of high-elevated fumarole fields, low-biomass communities on the boundary between ice and fire. Sci Rep 2025;15:16600. [PMID: 40360685 PMCID: PMC12075824 DOI: 10.1038/s41598-025-99782-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Accepted: 04/22/2025] [Indexed: 05/15/2025]  Open
48
Wang JQ, Yu T, Qiu HY, Ji SW, Xu ZQ, Cui QC, Li HF, Liang WF, Feng S, Fu CT, Gao X, Han ZZ, Tian WN, Li JX, Xue SJ. Differential impact of spotted fever group rickettsia and anaplasmosis on tick microbial ecology: evidence from multi-species comparative microbiome analysis. Front Microbiol 2025;16:1589263. [PMID: 40432969 PMCID: PMC12106494 DOI: 10.3389/fmicb.2025.1589263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2025] [Accepted: 04/22/2025] [Indexed: 05/29/2025]  Open
49
Xie X, Wang JK, Liu JX, Guan LL, Neves ALA. Temporal microbial colonization on different forages is driven by the rumen environmental conditions. Anim Microbiome 2025;7:46. [PMID: 40355960 PMCID: PMC12067915 DOI: 10.1186/s42523-025-00407-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2025] [Accepted: 04/09/2025] [Indexed: 05/15/2025]  Open
50
Sacharow J, Ratering S, Quiroga S, Geissler-Plaum R, Schneider B, Österreicher Cunha-Dupont A, Schnell S. Composition of cercozoan diversity: Unravelling leaf, root, and soil specificity in crop plants. Eur J Protistol 2025;99:126152. [PMID: 40513363 DOI: 10.1016/j.ejop.2025.126152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Revised: 05/09/2025] [Accepted: 05/09/2025] [Indexed: 06/16/2025]
PrevPage 1 of 61 123456061Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA