1
|
Burban E, Tenaillon MI, Glémin S. RIDGE, a tool tailored to detect gene flow barriers across species pairs. Mol Ecol Resour 2024; 24:e13944. [PMID: 38419376 DOI: 10.1111/1755-0998.13944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 01/19/2024] [Accepted: 02/05/2024] [Indexed: 03/02/2024]
Abstract
Characterizing the processes underlying reproductive isolation between diverging lineages is central to understanding speciation. Here, we present RIDGE-Reproductive Isolation Detection using Genomic polymorphisms-a tool tailored for quantifying gene flow barrier proportion and identifying the relevant genomic regions. RIDGE relies on an Approximate Bayesian Computation with a model-averaging approach to accommodate diverse scenarios of lineage divergence. It captures heterogeneity in effective migration rate along the genome while accounting for variation in linked selection and recombination. The barrier detection test relies on numerous summary statistics to compute a Bayes factor, offering a robust statistical framework that facilitates cross-species comparisons. Simulations revealed RIDGE's efficiency in capturing signals of ongoing migration. Model averaging proved particularly valuable in scenarios of high model uncertainty where no migration or migration homogeneity can be wrongly assumed, typically for recent divergence times <0.1 2Ne generations. Applying RIDGE to four published crow data sets, we first validated our tool by identifying a well-known large genomic region associated with mate choice patterns. Second, while we identified a significant overlap of outlier loci using RIDGE and traditional genomic scans, our results suggest that a substantial portion of previously identified outliers are likely false positives. Outlier detection relies on allele differentiation, relative measures of divergence and the count of shared polymorphisms and fixed differences. Our analyses also highlight the value of incorporating multiple summary statistics including our newly developed outlier ones that can be useful in challenging detection conditions.
Collapse
Affiliation(s)
- Ewen Burban
- University of Rennes, CNRS, ECOBIO-UMR 6553, Rennes, France
| | - Maud I Tenaillon
- University Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE-Le Moulon, Gif-sur-Yvette, France
| | - Sylvain Glémin
- University of Rennes, CNRS, ECOBIO-UMR 6553, Rennes, France
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden
| |
Collapse
|
2
|
Briscoe AD. A genetic cause of male mate preference. Science 2024; 383:1290-1291. [PMID: 38513043 DOI: 10.1126/science.ado4079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2024]
Abstract
A gene for mate preference has been shared between hybridizing butterfly species.
Collapse
Affiliation(s)
- Adriana D Briscoe
- Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, USA
| |
Collapse
|
3
|
Rossi M, Hausmann AE, Alcami P, Moest M, Roussou R, Van Belleghem SM, Wright DS, Kuo CY, Lozano-Urrego D, Maulana A, Melo-Flórez L, Rueda-Muñoz G, McMahon S, Linares M, Osman C, McMillan WO, Pardo-Diaz C, Salazar C, Merrill RM. Adaptive introgression of a visual preference gene. Science 2024; 383:1368-1373. [PMID: 38513020 DOI: 10.1126/science.adj9201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 01/30/2024] [Indexed: 03/23/2024]
Abstract
Visual preferences are important drivers of mate choice and sexual selection, but little is known of how they evolve at the genetic level. In this study, we took advantage of the diversity of bright warning patterns displayed by Heliconius butterflies, which are also used during mate choice. Combining behavioral, population genomic, and expression analyses, we show that two Heliconius species have evolved the same preferences for red patterns by exchanging genetic material through hybridization. Neural expression of regucalcin1 correlates with visual preference across populations, and disruption of regucalcin1 with CRISPR-Cas9 impairs courtship toward conspecific females, providing a direct link between gene and behavior. Our results support a role for hybridization during behavioral evolution and show how visually guided behaviors contributing to adaptation and speciation are encoded within the genome.
Collapse
Affiliation(s)
- Matteo Rossi
- Faculty of Biology, LMU, Munich, Germany
- Smithsonian Tropical Research Institute, Gamboa, Panama
| | | | | | - Markus Moest
- Department of Ecology and Research Department for Limnology, Mondsee, University of Innsbruck, Innsbruck, Austria
| | | | | | | | - Chi-Yun Kuo
- Faculty of Biology, LMU, Munich, Germany
- Smithsonian Tropical Research Institute, Gamboa, Panama
| | - Daniela Lozano-Urrego
- Faculty of Biology, LMU, Munich, Germany
- Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | | | - Lina Melo-Flórez
- Faculty of Biology, LMU, Munich, Germany
- Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | - Geraldine Rueda-Muñoz
- Faculty of Biology, LMU, Munich, Germany
- Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | | | - Mauricio Linares
- Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | | | | | | | - Camilo Salazar
- Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | - Richard M Merrill
- Faculty of Biology, LMU, Munich, Germany
- Smithsonian Tropical Research Institute, Gamboa, Panama
| |
Collapse
|
4
|
Merrill RM, Arenas-Castro H, Feller AF, Harenčár J, Rossi M, Streisfeld MA, Kay KM. Genetics and the Evolution of Prezygotic Isolation. Cold Spring Harb Perspect Biol 2024; 16:a041439. [PMID: 37848246 PMCID: PMC10835618 DOI: 10.1101/cshperspect.a041439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2023]
Abstract
The significance of prezygotic isolation for speciation has been recognized at least since the Modern Synthesis. However, fundamental questions remain. For example, how are genetic associations between traits that contribute to prezygotic isolation maintained? What is the source of genetic variation underlying the evolution of these traits? And how do prezygotic barriers affect patterns of gene flow? We address these questions by reviewing genetic features shared across plants and animals that influence prezygotic isolation. Emerging technologies increasingly enable the identification and functional characterization of the genes involved, allowing us to test established theoretical expectations. Embedding these genes in their developmental context will allow further predictions about what constrains the evolution of prezygotic isolation. Ongoing improvements in statistical and computational tools will reveal how pre- and postzygotic isolation may differ in how they influence gene flow across the genome. Finally, we highlight opportunities for progress by combining theory with appropriate data.
Collapse
Affiliation(s)
- Richard M Merrill
- Faculty of Biology, Division of Evolutionary Biology, LMU Munich, 82152 Planegg-Martinsried, Germany
| | - Henry Arenas-Castro
- School of Biological Sciences, University of Queensland, St. Lucia, Queensland 4072, Australia
| | - Anna F Feller
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA
- Arnold Arboretum of Harvard University, Boston, Massachusetts 02131, USA
| | - Julia Harenčár
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, California 95060, USA
| | - Matteo Rossi
- Faculty of Biology, Division of Evolutionary Biology, LMU Munich, 82152 Planegg-Martinsried, Germany
| | - Matthew A Streisfeld
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon 97403-5289, USA
| | - Kathleen M Kay
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, California 95060, USA
| |
Collapse
|
5
|
Mas-Sandoval A, Mathieson S, Fumagalli M. The genomic footprint of social stratification in admixing American populations. eLife 2023; 12:e84429. [PMID: 38038347 PMCID: PMC10776089 DOI: 10.7554/elife.84429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 11/22/2023] [Indexed: 12/02/2023] Open
Abstract
Cultural and socioeconomic differences stratify human societies and shape their genetic structure beyond the sole effect of geography. Despite mating being limited by sociocultural stratification, most demographic models in population genetics often assume random mating. Taking advantage of the correlation between sociocultural stratification and the proportion of genetic ancestry in admixed populations, we sought to infer the former process in the Americas. To this aim, we define a mating model where the individual proportions of the genome inherited from Native American, European, and sub-Saharan African ancestral populations constrain the mating probabilities through ancestry-related assortative mating and sex bias parameters. We simulate a wide range of admixture scenarios under this model. Then, we train a deep neural network and retrieve good performance in predicting mating parameters from genomic data. Our results show how population stratification, shaped by socially constructed racial and gender hierarchies, has constrained the admixture processes in the Americas since the European colonization and the subsequent Atlantic slave trade.
Collapse
Affiliation(s)
- Alex Mas-Sandoval
- Department of Life Sciences, Silwood Park Campus, Imperial College LondonLondonUnited Kingdom
- Department of Statistical Sciences, University of BolognaBolognaItaly
| | - Sara Mathieson
- Department of Computer Science, Haverford CollegeHaverfordUnited States
| | - Matteo Fumagalli
- Department of Life Sciences, Silwood Park Campus, Imperial College LondonLondonUnited Kingdom
- School of Biological and Behavioural Sciences, Queen Mary University of LondonLondonUnited Kingdom
| |
Collapse
|
6
|
Laetsch DR, Bisschop G, Martin SH, Aeschbacher S, Setter D, Lohse K. Demographically explicit scans for barriers to gene flow using gIMble. PLoS Genet 2023; 19:e1010999. [PMID: 37816069 PMCID: PMC10610087 DOI: 10.1371/journal.pgen.1010999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 10/27/2023] [Accepted: 09/25/2023] [Indexed: 10/12/2023] Open
Abstract
Identifying regions of the genome that act as barriers to gene flow between recently diverged taxa has remained challenging given the many evolutionary forces that generate variation in genetic diversity and divergence along the genome, and the stochastic nature of this variation. Progress has been impeded by a conceptual and methodological divide between analyses that infer the demographic history of speciation and genome scans aimed at identifying locally maladaptive alleles i.e. genomic barriers to gene flow. Here we implement genomewide IM blockwise likelihood estimation (gIMble), a composite likelihood approach for the quantification of barriers, that bridges this divide. This analytic framework captures background selection and selection against barriers in a model of isolation with migration (IM) as heterogeneity in effective population size (Ne) and effective migration rate (me), respectively. Variation in both effective demographic parameters is estimated in sliding windows via pre-computed likelihood grids. gIMble includes modules for pre-processing/filtering of genomic data and performing parametric bootstraps using coalescent simulations. To demonstrate the new approach, we analyse data from a well-studied pair of sister species of tropical butterflies with a known history of post-divergence gene flow: Heliconius melpomene and H. cydno. Our analyses uncover both large-effect barrier loci (including well-known wing-pattern genes) and a genome-wide signal of a polygenic barrier architecture.
Collapse
Affiliation(s)
- Dominik R. Laetsch
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| | - Gertjan Bisschop
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| | - Simon H. Martin
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| | - Simon Aeschbacher
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Derek Setter
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| | - Konrad Lohse
- Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| |
Collapse
|
7
|
Gauthier J, Meier J, Legeai F, McClure M, Whibley A, Bretaudeau A, Boulain H, Parrinello H, Mugford ST, Durbin R, Zhou C, McCarthy S, Wheat CW, Piron-Prunier F, Monsempes C, François MC, Jay P, Noûs C, Persyn E, Jacquin-Joly E, Meslin C, Montagné N, Lemaitre C, Elias M. First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies. Mol Ecol Resour 2023; 23:872-885. [PMID: 36533297 DOI: 10.1111/1755-0998.13749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 11/30/2022] [Accepted: 12/05/2022] [Indexed: 12/23/2022]
Abstract
The ithomiine butterflies (Nymphalidae: Danainae) represent the largest known radiation of Müllerian mimetic butterflies. They dominate by number the mimetic butterfly communities, which include species such as the iconic neotropical Heliconius genus. Recent studies on the ecology and genetics of speciation in Ithomiini have suggested that sexual pheromones, colour pattern and perhaps hostplant could drive reproductive isolation. However, no reference genome was available for Ithomiini, which has hindered further exploration on the genetic architecture of these candidate traits, and more generally on the genomic patterns of divergence. Here, we generated high-quality, chromosome-scale genome assemblies for two Melinaea species, M. marsaeus and M. menophilus, and a draft genome of the species Ithomia salapia. We obtained genomes with a size ranging from 396 to 503 Mb across the three species and scaffold N50 of 40.5 and 23.2 Mb for the two chromosome-scale assemblies. Using collinearity analyses we identified massive rearrangements between the two closely related Melinaea species. An annotation of transposable elements and gene content was performed, as well as a specialist annotation to target chemosensory genes, which is crucial for host plant detection and mate recognition in mimetic species. A comparative genomic approach revealed independent gene expansions in ithomiines and particularly in gustatory receptor genes. These first three genomes of ithomiine mimetic butterflies constitute a valuable addition and a welcome comparison to existing biological models such as Heliconius, and will enable further understanding of the mechanisms of adaptation in butterflies.
Collapse
Affiliation(s)
| | - Joana Meier
- Department of Zoology, University of Cambridge, Cambridge, UK
| | - Fabrice Legeai
- BIPAA, IGEPP, INRAE, Institut Agro, Univ Rennes, Rennes, France
- Univ Rennes, Inria, CNRS, IRISA, Rennes, France
| | - Melanie McClure
- Institut Systématique Évolution Biodiversité (ISYEB), Centre National de la Recherche Scientifique, MNHN, EPHE, Sorbonne Université, Université des Antilles, Paris, France
- Laboratoire Écologie, Évolution, Interactions des Systèmes Amazoniens (LEEISA), Université de Guyane, CNRS, IFREMER, Cayenne, France
| | - Annabel Whibley
- School of Biological Sciences, University of Auckland, Auckland, New Zealand
| | - Anthony Bretaudeau
- BIPAA, IGEPP, INRAE, Institut Agro, Univ Rennes, Rennes, France
- Univ Rennes, Inria, CNRS, IRISA, Rennes, France
| | - Hélène Boulain
- Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland
| | - Hugues Parrinello
- MGX-Montpellier GenomiX, Univ. Montpellier, CNRS, INSERM, Montpellier, France
| | - Sam T Mugford
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich, UK
| | - Richard Durbin
- Department of Genetics, University of Cambridge, Cambridge, UK
- Tree of Life Programme, Wellcome Sanger Institute, Hinxton, UK
| | - Chenxi Zhou
- Department of Genetics, University of Cambridge, Cambridge, UK
- Tree of Life Programme, Wellcome Sanger Institute, Hinxton, UK
| | - Shane McCarthy
- Department of Genetics, University of Cambridge, Cambridge, UK
- Tree of Life Programme, Wellcome Sanger Institute, Hinxton, UK
| | | | - Florence Piron-Prunier
- Institut Systématique Évolution Biodiversité (ISYEB), Centre National de la Recherche Scientifique, MNHN, EPHE, Sorbonne Université, Université des Antilles, Paris, France
| | - Christelle Monsempes
- Institute of Ecology and Environmental Sciences of Paris, Sorbonne Université, INRAE, CNRS, IRD, UPEC, Université de Paris, Paris, France
| | - Marie-Christine François
- Institute of Ecology and Environmental Sciences of Paris, Sorbonne Université, INRAE, CNRS, IRD, UPEC, Université de Paris, Paris, France
| | - Paul Jay
- Ecologie Systématique Evolution, Bâtiment 360, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
| | | | - Emma Persyn
- Institute of Ecology and Environmental Sciences of Paris, Sorbonne Université, INRAE, CNRS, IRD, UPEC, Université de Paris, Paris, France
- CIRAD, UMR PVBMT, St Pierre, France
| | - Emmanuelle Jacquin-Joly
- Institute of Ecology and Environmental Sciences of Paris, Sorbonne Université, INRAE, CNRS, IRD, UPEC, Université de Paris, Paris, France
| | - Camille Meslin
- Institute of Ecology and Environmental Sciences of Paris, Sorbonne Université, INRAE, CNRS, IRD, UPEC, Université de Paris, Paris, France
| | - Nicolas Montagné
- Institute of Ecology and Environmental Sciences of Paris, Sorbonne Université, INRAE, CNRS, IRD, UPEC, Université de Paris, Paris, France
| | | | - Marianne Elias
- Institut Systématique Évolution Biodiversité (ISYEB), Centre National de la Recherche Scientifique, MNHN, EPHE, Sorbonne Université, Université des Antilles, Paris, France
| |
Collapse
|
8
|
Aubier TG, Bürger R, Servedio MR. The effectiveness of pseudomagic traits in promoting premating isolation. Proc Biol Sci 2023; 290:20222108. [PMID: 36883275 PMCID: PMC9993058 DOI: 10.1098/rspb.2022.2108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 02/10/2023] [Indexed: 03/09/2023] Open
Abstract
Upon the secondary contact of populations, speciation with gene flow is greatly facilitated when the same pleiotropic loci are both subject to divergent ecological selection and induce non-random mating, leading to loci with this fortuitous combination of functions being referred to as 'magic trait' loci. We use a population genetics model to examine whether 'pseudomagic trait' complexes, composed of physically linked loci fulfilling these two functions, are as efficient in promoting premating isolation as magic traits. We specifically measure the evolution of choosiness, which controls the strength of assortative mating. We show that, surprisingly, pseudomagic trait complexes, and to a lesser extent also physically unlinked loci, can lead to the evolution of considerably stronger assortative mating preferences than do magic traits, provided polymorphism at the involved loci is maintained. This is because assortative mating preferences are generally favoured when there is a risk of producing maladapted recombinants, as occurs with non-magic trait complexes but not with magic traits (since pleiotropy precludes recombination). Contrary to current belief, magic traits may not be the most effective genetic architecture for promoting strong premating isolation. Therefore, distinguishing between magic traits and pseudomagic trait complexes is important when inferring their role in premating isolation. This calls for further fine-scale genomic research on speciation genes.
Collapse
Affiliation(s)
- Thomas G. Aubier
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
- Laboratoire Évolution & Diversité Biologique, Université Paul Sabatier Toulouse III, UMR 5174, CNRS/IRD, 31077 Toulouse, France
| | - Reinhard Bürger
- Department of Mathematics, University of Vienna, 1090 Vienna, Austria
| | - Maria R. Servedio
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| |
Collapse
|
9
|
Hausmann AE, Freire M, Alfthan SA, Kuo CY, Linares M, McMillan O, Pardo-Diaz C, Salazar C, Merrill RM. Does sexual conflict contribute to the evolution of novel warning patterns? J Evol Biol 2023; 36:563-578. [PMID: 36702779 DOI: 10.1111/jeb.14151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Revised: 11/18/2022] [Accepted: 11/24/2022] [Indexed: 01/28/2023]
Abstract
Why warning patterns are so diverse is an enduring evolutionary puzzle. Because predators associate particular patterns with unpleasant experiences, an individual's predation risk should decrease as the local density of its warning pattern increases, promoting pattern monomorphism. Distasteful Heliconius butterflies are known for their diversity of warning patterns. Here, we explore whether interlocus sexual conflict can contribute to their diversification. Male Heliconius use warning patterns as mating cues, but mated females may suffer costs if this leads to disturbance, favouring novel patterns. Using simulations, we show that under our model conditions drift alone is unlikely to cause pattern diversification, but that sexual conflict can assist such a process. We also find that genetic architecture influences the evolution of male preferences, which track changes in warning pattern due to sexual selection. When male attraction imposes costs on females, this affects the speed at which novel pattern alleles increase. In two experiments, females laid fewer eggs with males present. However, although males in one experiment showed less interest in females with manipulated patterns, we found no evidence that female colouration mitigates sex-specific costs. Overall, male attraction to conspecific warning patterns may impose an unrecognized cost on Heliconius females, but further work is required to determine this experimentally.
Collapse
Affiliation(s)
- Alexander E Hausmann
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität, Munich, Germany
| | - Marília Freire
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität, Munich, Germany
| | - Sara A Alfthan
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Chi-Yun Kuo
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität, Munich, Germany.,Smithsonian Tropical Research Institute, Panama City, Panama
| | - Mauricio Linares
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | - Owen McMillan
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Carolina Pardo-Diaz
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | - Camilo Salazar
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Bogotá, Colombia
| | - Richard M Merrill
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität, Munich, Germany.,Smithsonian Tropical Research Institute, Panama City, Panama
| |
Collapse
|
10
|
Schuldiner‐Harpaz T, Merrill RM, Jiggins CD. Evolution of physical linkage between loci controlling ecological traits and mating preferences. J Evol Biol 2022; 35:1537-1547. [PMID: 36196988 PMCID: PMC9827829 DOI: 10.1111/jeb.14105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 07/26/2022] [Accepted: 08/08/2022] [Indexed: 01/12/2023]
Abstract
Coupling of multiple barriers to gene-flow, such as divergent local adaptation and reproductive isolation, facilitates speciation. However, alleles at loci that contribute to barrier effects can be dissociated by recombination. Models of linkage between diverging alleles often consider elements that reduce recombination, such as chromosomal inversions and alleles that modify recombination rate between existing loci. In contrast, here, we consider the evolution of linkage due to the close proximity of loci on the same chromosome. Examples of such physical linkage exist in several species, but in other cases, strong associations are maintained without physical linkage. We use an individual-based model to study the conditions under which the physical linkage between loci controlling ecological traits and mating preferences might be expected to evolve. We modelled a single locus controlling an ecological trait that acts also as a mating cue. Mating preferences are controlled by multiple loci, formed by mutations that are randomly placed in the "genome", within varying distances from the ecological trait locus, allowing us to examine which genomic architectures spread across the population. Our model reveals that stronger physical linkage is favoured when mating preferences and selection are weaker. Under such conditions mating among divergent phenotypes is more frequent, and matching ecological trait and mating preference alleles are more likely to become dissociated by recombination, favouring the evolution of genetic linkage. While most theoretical studies on clustering of divergent loci focus on how physical linkage influences speciation, we show how physical linkage itself can arise, establishing conditions that can favour speciation.
Collapse
|
11
|
Li Y, Liu Z, Liu C, Shi Z, Pang L, Chen C, Chen Y, Pan R, Zhou W, Chen X, Rokas A, Huang J, Shen X. HGT is widespread in insects and contributes to male courtship in lepidopterans. Cell 2022; 185:2975-2987.e10. [PMID: 35853453 PMCID: PMC9357157 DOI: 10.1016/j.cell.2022.06.014] [Citation(s) in RCA: 38] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 05/04/2022] [Accepted: 06/08/2022] [Indexed: 12/13/2022]
Abstract
Horizontal gene transfer (HGT) is an important evolutionary force shaping prokaryotic and eukaryotic genomes. HGT-acquired genes have been sporadically reported in insects, a lineage containing >50% of animals. We systematically examined HGT in 218 high-quality genomes of diverse insects and found that they acquired 1,410 genes exhibiting diverse functions, including many not previously reported, via 741 distinct transfers from non-metazoan donors. Lepidopterans had the highest average number of HGT-acquired genes. HGT-acquired genes containing introns exhibited substantially higher expression levels than genes lacking introns, suggesting that intron gains were likely involved in HGT adaptation. Lastly, we used the CRISPR-Cas9 system to edit the prevalent unreported gene LOC105383139, which was transferred into the last common ancestor of moths and butterflies. In diamondback moths, males lacking LOC105383139 courted females significantly less. We conclude that HGT has been a major contributor to insect adaptation.
Collapse
|
12
|
Abstract
Speciation is the process by which barriers to gene flow evolve between populations. Although we now know that speciation is largely driven by natural selection, knowledge of the agents of selection and the genetic and genomic mechanisms that facilitate divergence is required for a satisfactory theory of speciation. In this essay, we highlight three advances/problems in our understanding of speciation that have arisen from studies of the genes and genomic regions that underlie the evolution of reproductive isolation. First, we describe how the identification of “speciation” genes makes it possible to identify the agents of selection causing the evolution of reproductive isolation, while also noting that the link between the genetics of phenotypic divergence and intrinsic postzygotic reproductive barriers remains tenuous. Second, we discuss the important role of recombination suppressors in facilitating speciation with gene flow, but point out that the means and timing by which reproductive barriers become associated with recombination cold spots remains uncertain. Third, we establish the importance of ancient genetic variation in speciation, although we argue that the focus of speciation studies on evolutionarily young groups may bias conclusions in favor of ancient variation relative to new mutations.
Collapse
|
13
|
Abstract
The evolution of color vision is often studied through the lens of receptor gain relative to an ancestor with fewer spectral classes of photoreceptor. For instance, in Heliconius butterflies, a genus-specific UVRh opsin duplication led to the evolution of UV color discrimination in Heliconius erato females, a rare trait among butterflies. However, color vision evolution is not well understood in the context of loss. In Heliconius melpomene and Heliconius ismenius lineages, the UV2 receptor subtype has been lost, which limits female color vision in shorter wavelengths. Here, we compare the visual systems of butterflies that have either retained or lost the UV2 photoreceptor using intracellular recordings, ATAC-seq, and antibody staining. We identify several ways these butterflies modulate their color vision. In H. melpomene, chromatin reorganization has downregulated an otherwise intact UVRh2 gene, whereas in H. ismenius, pseudogenization has led to the truncation of UVRh2. In species that lack the UV2 receptor, the peak sensitivity of the remaining UV1 photoreceptor cell is shifted to longer wavelengths. Across Heliconius, we identify the widespread use of filtering pigments and co-expression of two opsins in the same photoreceptor cells. Multiple mechanisms of spectral tuning, including the molecular evolution of blue opsins, have led to the divergence of receptor sensitivities between species. The diversity of photoreceptor and ommatidial subtypes between species suggests that Heliconius visual systems are under varying selection pressures for color discrimination. Modulating the wavelengths of peak sensitivities of both the blue- and remaining UV-sensitive photoreceptor cells suggests that Heliconius species may have compensated for UV receptor loss.
Collapse
Affiliation(s)
- Kyle J McCulloch
- Department of Ecology and Evolutionary Biology, University of California, Irvine, 321 Steinhaus Hall, Irvine, CA 92697, USA.,Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN 55108, USA
| | - Aide Macias-Muñoz
- Department of Ecology and Evolutionary Biology, University of California, Irvine, 321 Steinhaus Hall, Irvine, CA 92697, USA.,Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, Santa Barbara CA 93106, USA.,Department of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA
| | - Ali Mortazavi
- Department of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA
| | - Adriana D Briscoe
- Department of Ecology and Evolutionary Biology, University of California, Irvine, 321 Steinhaus Hall, Irvine, CA 92697, USA
| |
Collapse
|
14
|
Rather PA, Herzog AE, Ernst DA, Westerman EL. Effect of experience on mating behaviour in male Heliconius melpomene butterflies. Anim Behav 2022. [DOI: 10.1016/j.anbehav.2021.11.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
15
|
Metzler D, Knief U, Peñalba JV, Wolf JBW. Assortative mating and epistatic mating-trait architecture induce complex movement of the crow hybrid zone. Evolution 2021; 75:3154-3174. [PMID: 34694633 DOI: 10.1111/evo.14386] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 10/06/2021] [Indexed: 12/20/2022]
Abstract
Hybrid zones provide a window into the evolutionary processes governing species divergence. Yet, the contribution of mate choice to the temporal and spatial stability of hybrid zones remains poorly explored. Here, we investigate the effects of assortative mating on hybrid-zone dynamics by means of a mathematical model parameterized with phenotype and genotype data from the hybrid zone between all-black carrion and gray-coated hooded crows. In the best-fit model, narrow clines of the two mating-trait loci were maintained by a moderate degree of assortative mating inducing pre- and postzygotic isolation via positive frequency-dependent selection. Epistasis between the two loci induced hybrid-zone movement in favor of alleles conveying dark plumage followed by a shift in the opposite direction favoring gray-coated phenotypes ∼ 1 200 generations after secondary contact. Unlinked neutral loci diffused near-unimpeded across the zone. These results were generally robust to the choice of matching rule (self-referencing or parental imprinting) and effects of genetic drift. Overall, this study illustrates under which conditions assortative mating can maintain steep clines in mating-trait loci without generalizing to genome-wide reproductive isolation. It further emphasizes the importance of the genetic mating-trait architecture for spatio-temporal hybrid-zone dynamics.
Collapse
Affiliation(s)
- Dirk Metzler
- Faculty of Biology, Division of Evolutionary Biology, LMU Munich, Munich, 80539, Germany
| | - Ulrich Knief
- Faculty of Biology, Division of Evolutionary Biology, LMU Munich, Munich, 80539, Germany
| | - Joshua V Peñalba
- Faculty of Biology, Division of Evolutionary Biology, LMU Munich, Munich, 80539, Germany
| | - Jochen B W Wolf
- Faculty of Biology, Division of Evolutionary Biology, LMU Munich, Munich, 80539, Germany
| |
Collapse
|
16
|
Ernst DA, Westerman EL. Stage- and sex-specific transcriptome analyses reveal distinctive sensory gene expression patterns in a butterfly. BMC Genomics 2021; 22:584. [PMID: 34340656 PMCID: PMC8327453 DOI: 10.1186/s12864-021-07819-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 06/11/2021] [Indexed: 01/24/2023] Open
Abstract
Background Animal behavior is largely driven by the information that animals are able to extract and process from their environment. However, the function and organization of sensory systems often change throughout ontogeny, particularly in animals that undergo indirect development. As an initial step toward investigating these ontogenetic changes at the molecular level, we characterized the sensory gene repertoire and examined the expression profiles of genes linked to vision and chemosensation in two life stages of an insect that goes through metamorphosis, the butterfly Bicyclus anynana. Results Using RNA-seq, we compared gene expression in the heads of late fifth instar larvae and newly eclosed adults that were reared under identical conditions. Over 50 % of all expressed genes were differentially expressed between the two developmental stages, with 4,036 genes upregulated in larval heads and 4,348 genes upregulated in adult heads. In larvae, upregulated vision-related genes were biased toward those involved with eye development, while phototransduction genes dominated the vision genes that were upregulated in adults. Moreover, the majority of the chemosensory genes we identified in the B. anynana genome were differentially expressed between larvae and adults, several of which share homology with genes linked to pheromone detection, host plant recognition, and foraging in other species of Lepidoptera. Conclusions These results revealed promising candidates for furthering our understanding of sensory processing and behavior in the disparate developmental stages of butterflies and other animals that undergo metamorphosis. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07819-4.
Collapse
Affiliation(s)
- David A Ernst
- Department of Biological Sciences, University of Arkansas, 72701, Fayetteville, AR, USA.
| | - Erica L Westerman
- Department of Biological Sciences, University of Arkansas, 72701, Fayetteville, AR, USA
| |
Collapse
|
17
|
Zhang Y, Teng D, Lu W, Liu M, Zeng H, Cao L, Southcott L, Potdar S, Westerman E, Zhu AJ, Zhang W. A widely diverged locus involved in locomotor adaptation in Heliconius butterflies. Sci Adv 2021; 7:7/32/eabh2340. [PMID: 34348900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 06/17/2021] [Indexed: 06/13/2023]
Abstract
Heliconius butterflies have undergone adaptive radiation and therefore serve as an excellent system for exploring the continuum of speciation and adaptive evolution. However, there is a long-lasting paradox between their convergent mimetic wing patterns and rapid divergence in speciation. Here, we characterize a locus that consistently displays high divergence among Heliconius butterflies and acts as an introgression hotspot. We further show that this locus contains multiple genes related to locomotion and conserved in Lepidoptera. In light of these findings, we consider that locomotion traits may be under selection, and if these are heritable traits that are selected for, then they might act as species barriers.
Collapse
Affiliation(s)
- Yubo Zhang
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Dequn Teng
- State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing 100871, China
| | - Wei Lu
- State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing 100871, China
| | - Min Liu
- Ministry of Education Key Laboratory of Cell Proliferation and Differentiation, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, School of Life Sciences, Peking University, Beijing 100871, China
| | - Hua Zeng
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Lei Cao
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Laura Southcott
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL 60637, USA
| | - Sushant Potdar
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Erica Westerman
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Alan Jian Zhu
- Ministry of Education Key Laboratory of Cell Proliferation and Differentiation, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, School of Life Sciences, Peking University, Beijing 100871, China.
| | - Wei Zhang
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.
- State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing 100871, China
| |
Collapse
|
18
|
Zhang Y, Teng D, Lu W, Liu M, Zeng H, Cao L, Southcott L, Potdar S, Westerman E, Zhu AJ, Zhang W. A widely diverged locus involved in locomotor adaptation in Heliconius butterflies. Sci Adv 2021; 7:eabh2340. [PMID: 34348900 PMCID: PMC8336958 DOI: 10.1126/sciadv.abh2340] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 06/17/2021] [Indexed: 12/30/2023]
Abstract
Heliconius butterflies have undergone adaptive radiation and therefore serve as an excellent system for exploring the continuum of speciation and adaptive evolution. However, there is a long-lasting paradox between their convergent mimetic wing patterns and rapid divergence in speciation. Here, we characterize a locus that consistently displays high divergence among Heliconius butterflies and acts as an introgression hotspot. We further show that this locus contains multiple genes related to locomotion and conserved in Lepidoptera. In light of these findings, we consider that locomotion traits may be under selection, and if these are heritable traits that are selected for, then they might act as species barriers.
Collapse
Affiliation(s)
- Yubo Zhang
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Dequn Teng
- State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing 100871, China
| | - Wei Lu
- State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing 100871, China
| | - Min Liu
- Ministry of Education Key Laboratory of Cell Proliferation and Differentiation, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, School of Life Sciences, Peking University, Beijing 100871, China
| | - Hua Zeng
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Lei Cao
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
| | - Laura Southcott
- Committee on Evolutionary Biology, University of Chicago, Chicago, IL 60637, USA
| | - Sushant Potdar
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Erica Westerman
- Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA
| | - Alan Jian Zhu
- Ministry of Education Key Laboratory of Cell Proliferation and Differentiation, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, School of Life Sciences, Peking University, Beijing 100871, China.
| | - Wei Zhang
- State Key Laboratory of Protein and Plant Gene Research, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.
- State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing 100871, China
| |
Collapse
|
19
|
Van Belleghem SM, Cole JM, Montejo-Kovacevich G, Bacquet CN, McMillan WO, Papa R, Counterman BA. Selection and isolation define a heterogeneous divergence landscape between hybridizing Heliconius butterflies. Evolution 2021; 75:2251-2268. [PMID: 34019308 DOI: 10.1111/evo.14272] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 04/26/2021] [Accepted: 05/12/2021] [Indexed: 11/30/2022]
Abstract
Hybridizing species provide a powerful system to identify the processes that shape genomic variation and maintain species boundaries. However, complex histories of isolation, gene flow, and selection often generate heterogeneous genomic landscapes of divergence that complicate reconstruction of the speciation history. Here, we explore patterns of divergence to reconstruct recent speciation in the erato clade of Heliconius butterflies. We focus on the genomic landscape of divergence across three contact zones of the species H. erato and H. himera. We show that these hybridizing species have an intermediate level of divergence in the erato clade, which fits with their incomplete levels of reproductive isolation. Using demographic modeling and the relationship between admixture and divergence with recombination rate variation, we reconstruct histories of gene flow, selection, and demographic change that explain the observed patterns of genomic divergence. We find that periods of isolation and selection within populations, followed by secondary contact with asymmetrical gene flow are key factors in shaping the heterogeneous genomic landscapes. Collectively, these results highlight the effectiveness of demographic modeling and recombination rate estimates to disentangling the distinct contributions of gene flow and selection to patterns of genomic divergence.
Collapse
Affiliation(s)
| | - Jared M Cole
- Department of Biological Sciences, Mississippi State University, Mississippi State, USA.,Department of Integrative Biology, University of Texas at Austin, Austin, Texas, USA
| | | | | | | | - Riccardo Papa
- Department of Biology, University of Puerto Rico, Rio Piedras, Puerto Rico.,Molecular Sciences and Research Center, University of Puerto Rico, San Juan, PR
| | - Brian A Counterman
- Department of Biological Sciences, Mississippi State University, Mississippi State, USA.,Department of Biological Sciences, Auburn University, Alabama, USA
| |
Collapse
|
20
|
Butlin RK, Servedio MR, Smadja CM, Bank C, Barton NH, Flaxman SM, Giraud T, Hopkins R, Larson EL, Maan ME, Meier J, Merrill R, Noor MAF, Ortiz-Barrientos D, Qvarnström A. Homage to Felsenstein 1981, or why are there so few/many species? Evolution 2021; 75:978-988. [PMID: 33870499 DOI: 10.1111/evo.14235] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Revised: 04/09/2021] [Accepted: 04/12/2021] [Indexed: 02/01/2023]
Abstract
If there are no constraints on the process of speciation, then the number of species might be expected to match the number of available niches and this number might be indefinitely large. One possible constraint is the opportunity for allopatric divergence. In 1981, Felsenstein used a simple and elegant model to ask if there might also be genetic constraints. He showed that progress towards speciation could be described by the build-up of linkage disequilibrium among divergently selected loci and between these loci and those contributing to other forms of reproductive isolation. Therefore, speciation is opposed by recombination, because it tends to break down linkage disequilibria. Felsenstein then introduced a crucial distinction between "two-allele" models, which are subject to this effect, and "one-allele" models, which are free from the recombination constraint. These fundamentally important insights have been the foundation for both empirical and theoretical studies of speciation ever since.
Collapse
Affiliation(s)
- Roger K Butlin
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK and Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - Maria R Servedio
- Department of Biology, University of North Carolina, Chapel Hill, NC, 27599
| | - Carole M Smadja
- Institut des Sciences de l'Evolution de Montpellier, (ISEM-Université de Montpellier, CNRS, IRD), Montpellier, France
| | - Claudia Bank
- Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland and, Gulbenkian Science Institute, Oeiras, Portugal
| | | | - Samuel M Flaxman
- Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO, 80309
| | - Tatiana Giraud
- Ecologie Systématique et Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France
| | - Robin Hopkins
- Department of Organismic and Evolutionary Biology, Arnold Arboretum, Harvard University, Boston, MA, 02131
| | - Erica L Larson
- Department of Biological Sciences, University of Denver, Denver, CO, 80208
| | - Martine E Maan
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
| | - Joana Meier
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Richard Merrill
- Division of Evolutionary Biology, Faculty of Biology, LMU Munich, Planegg-Martinsried, 82152, Germany
| | | | - Daniel Ortiz-Barrientos
- School of Biological Sciences, The University of Queensland, St Lucia, Queensland, 4072, Australia
| | - Anna Qvarnström
- Department of Ecology and Genetics, Uppsala University, Uppsala, SE-751 05, Sweden
| |
Collapse
|
21
|
Svensson EI, Arnold SJ, Bürger R, Csilléry K, Draghi J, Henshaw JM, Jones AG, De Lisle S, Marques DA, McGuigan K, Simon MN, Runemark A. Correlational selection in the age of genomics. Nat Ecol Evol 2021; 5:562-73. [PMID: 33859374 DOI: 10.1038/s41559-021-01413-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2019] [Accepted: 02/11/2021] [Indexed: 02/01/2023]
Abstract
Ecologists and evolutionary biologists are well aware that natural and sexual selection do not operate on traits in isolation, but instead act on combinations of traits. This long-recognized and pervasive phenomenon is known as multivariate selection, or-in the particular case where it favours correlations between interacting traits-correlational selection. Despite broad acknowledgement of correlational selection, the relevant theory has often been overlooked in genomic research. Here, we discuss theory and empirical findings from ecological, quantitative genetic and genomic research, linking key insights from different fields. Correlational selection can operate on both discrete trait combinations and quantitative characters, with profound implications for genomic architecture, linkage, pleiotropy, evolvability, modularity, phenotypic integration and phenotypic plasticity. We synthesize current knowledge and discuss promising research approaches that will enable us to understand how correlational selection shapes genomic architecture, thereby linking quantitative genetic approaches with emerging genomic methods. We suggest that research on correlational selection has great potential to integrate multiple fields in evolutionary biology, including developmental and functional biology, ecology, quantitative genetics, phenotypic polymorphisms, hybrid zones and speciation processes.
Collapse
|
22
|
Hausmann AE, Kuo CY, Freire M, Rueda-M N, Linares M, Pardo-Diaz C, Salazar C, Merrill RM. Light environment influences mating behaviours during the early stages of divergence in tropical butterflies. Proc Biol Sci 2021; 288:20210157. [PMID: 33757348 PMCID: PMC8059652 DOI: 10.1098/rspb.2021.0157] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 02/23/2021] [Indexed: 12/31/2022] Open
Abstract
Speciation is facilitated when traits under divergent selection also act as mating cues. Fluctuations in sensory conditions can alter signal perception independently of adaptation to the broader sensory environment, but how this fine-scale variation may constrain or promote behavioural isolation has received little attention. The warning patterns of Heliconius butterflies are under selection for aposematism and act as mating cues. Using computer vision, we extracted behavioural data from 1481 h of video footage, for 387 individuals. We show that the putative hybrid species H. heurippa and its close relative H. timareta linaresi differ in their response to divergent warning patterns, but that these differences are strengthened with increased local illuminance. Trials with live individuals reveal low-level assortative mating that is sufficiently explained by differences in visual attraction. Finally, results from hybrid butterflies are consistent with linkage between a major warning pattern gene and the corresponding behaviour, though the differences in behaviour we observe are unlikely to cause rapid reproductive isolation as predicted under a model of hybrid trait speciation. Overall, our results reveal that the contribution of ecological mating cues to reproductive isolation may depend on the immediate sensory conditions during which they are displayed to conspecifics.
Collapse
Affiliation(s)
- Alexander E. Hausmann
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2, 82152 Planegg-Martinsried, Germany
| | - Chi-Yun Kuo
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2, 82152 Planegg-Martinsried, Germany
- Smithsonian Tropical Research Institute, Gamboa 0843-03092, Panama
| | - Marília Freire
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2, 82152 Planegg-Martinsried, Germany
| | - Nicol Rueda-M
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Carrera 24 No 63C-69, Bogotá 111221, Colombia
| | - Mauricio Linares
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Carrera 24 No 63C-69, Bogotá 111221, Colombia
| | - Carolina Pardo-Diaz
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Carrera 24 No 63C-69, Bogotá 111221, Colombia
| | - Camilo Salazar
- Department of Biology, Faculty of Natural Sciences, Universidad del Rosario, Carrera 24 No 63C-69, Bogotá 111221, Colombia
| | - Richard M. Merrill
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Grosshaderner Strasse 2, 82152 Planegg-Martinsried, Germany
| |
Collapse
|
23
|
Xu M, Shaw KL. Extensive Linkage and Genetic Coupling of Song and Preference Loci Underlying Rapid Speciation in Laupala Crickets. J Hered 2021; 112:204-213. [PMID: 33438016 DOI: 10.1093/jhered/esab001] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Accepted: 01/11/2021] [Indexed: 12/20/2022] Open
Abstract
In nature, closely related species commonly display divergent mating behaviors, suggesting a central role for such traits in the origin of species. Elucidating the genetic basis of divergence in these traits is necessary to understand the evolutionary process leading to reproductive barriers and speciation. The rapidly speciating Hawaiian crickets of the genus Laupala provides an ideal system for dissecting the genetic basis of mating behavior divergence. In Laupala, closely related species differ markedly in male song pulse rate and female preference for pulse rate. These behaviors play an important role in determining mating patterns. Previous studies identified a genetic architecture consisting of numerous small to moderate effect loci causing interspecific differences in pulse rate and preference, including colocalizing pulse rate and preference QTL on linkage group one (LG1). To further interrogate these QTL, we conduct a fine mapping study using high-density SNP linkage maps. With improved statistical power and map resolution, we provide robust evidence for genetic coupling between song and preference, along with two additional pulse rate QTL on LG1, revealing a more resolved picture of the genetic architecture underlying mating behavior divergence. Our sequence-based genetic map, along with dramatically narrowed QTL confidence intervals, allowed us to annotate genes within the QTL regions and identify several exciting candidate genes underlying variation in pulse rate and preference divergence. Such knowledge suggests potential molecular mechanisms underlying the evolution of behavioral barriers.
Collapse
Affiliation(s)
- Mingzi Xu
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY
| | - Kerry L Shaw
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY
| |
Collapse
|
24
|
Van Belleghem SM, Lewis JJ, Rivera ES, Papa R. Heliconius butterflies: a window into the evolution and development of diversity. Curr Opin Genet Dev 2021; 69:72-81. [PMID: 33714874 DOI: 10.1016/j.gde.2021.01.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 01/14/2021] [Accepted: 01/25/2021] [Indexed: 10/21/2022]
Abstract
Butterflies have become prominent models for studying the evolution and development of phenotypic variation. In Heliconius, extraordinary within species divergence and between species convergence in wing color patterns has driven decades of comparative genetic studies. However, connecting genetic patterns of diversification to the molecular mechanisms of adaptation has remained elusive. Recent studies are bridging this gap between genome and function and have driven substantial advances in deciphering the genetic architecture of diversification in Heliconius. While only a handful of large-effect genes were initially identified in the diversification of Heliconius color patterns, recent experiments have begun to unravel the underlying gene regulatory networks and how these have evolved. These results reveal an evolutionary story of many interacting loci and partly independent genetic architectures that underlie convergent evolution.
Collapse
Affiliation(s)
| | - James J Lewis
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA; Baker Institute for Animal Health, Cornell University, Ithaca, NY, USA
| | - Edgardo S Rivera
- Department of Biology, University of Puerto Rico-Rio Piedras, San Juan, Puerto Rico; Chairs of Biomaterials, University of Bayreuth, Bayreuth, Bayern, Germany
| | - Riccardo Papa
- Department of Biology, University of Puerto Rico-Rio Piedras, San Juan, Puerto Rico; Molecular Sciences and Research Center, University of Puerto Rico, San Juan, Puerto Rico.
| |
Collapse
|
25
|
Darragh K, Orteu A, Black D, Byers KJRP, Szczerbowski D, Warren IA, Rastas P, Pinharanda A, Davey JW, Fernanda Garza S, Abondano Almeida D, Merrill RM, McMillan WO, Schulz S, Jiggins CD. A novel terpene synthase controls differences in anti-aphrodisiac pheromone production between closely related Heliconius butterflies. PLoS Biol 2021; 19:e3001022. [PMID: 33465061 PMCID: PMC7815096 DOI: 10.1371/journal.pbio.3001022] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 11/30/2020] [Indexed: 02/07/2023] Open
Abstract
Plants and insects often use the same compounds for chemical communication, but not much is known about the genetics of convergent evolution of chemical signals. The terpene (E)-β-ocimene is a common component of floral scent and is also used by the butterfly Heliconius melpomene as an anti-aphrodisiac pheromone. While the biosynthesis of terpenes has been described in plants and microorganisms, few terpene synthases (TPSs) have been identified in insects. Here, we study the recent divergence of 2 species, H. melpomene and Heliconius cydno, which differ in the presence of (E)-β-ocimene; combining linkage mapping, gene expression, and functional analyses, we identify 2 novel TPSs. Furthermore, we demonstrate that one, HmelOS, is able to synthesise (E)-β-ocimene in vitro. We find no evidence for TPS activity in HcydOS (HmelOS ortholog of H. cydno), suggesting that the loss of (E)-β-ocimene in this species is the result of coding, not regulatory, differences. The TPS enzymes we discovered are unrelated to previously described plant and insect TPSs, demonstrating that chemical convergence has independent evolutionary origins. Plants and insects often use the same compounds for chemical communication, but little is known about the convergent evolution of such chemical signals. This study identifies a novel terpene synthase involved in production of an anti-aphrodisiac pheromone by the butterfly Heliconius melpomene. This enzyme is unrelated to other insect terpene synthases, providing evidence that the ability to synthesise terpenes has arisen multiple times independently within the insects.
Collapse
Affiliation(s)
- Kathy Darragh
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- Smithsonian Tropical Research Institute, Panamá, Panamá
- * E-mail:
| | - Anna Orteu
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Daniella Black
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- School of Biology, University of St Andrews, St Andrews, United Kingdom
| | - Kelsey J. R. P. Byers
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- Smithsonian Tropical Research Institute, Panamá, Panamá
| | - Daiane Szczerbowski
- Institute of Organic Chemistry, Department of Life Sciences, Technische Universität Braunschweig, Braunschweig, Germany
| | - Ian A. Warren
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - Pasi Rastas
- Institute of Biotechnology, University of Helsinki, Helsinki, Finland
| | - Ana Pinharanda
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | - John W. Davey
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
| | | | | | - Richard M. Merrill
- Smithsonian Tropical Research Institute, Panamá, Panamá
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Munich, Germany
| | | | - Stefan Schulz
- Institute of Organic Chemistry, Department of Life Sciences, Technische Universität Braunschweig, Braunschweig, Germany
| | - Chris D. Jiggins
- Department of Zoology, University of Cambridge, Cambridge, United Kingdom
- Smithsonian Tropical Research Institute, Panamá, Panamá
| |
Collapse
|
26
|
Byers KJRP, Darragh K, Fernanda Garza S, Abondano Almeida D, Warren IA, Rastas PMA, Merrill RM, Schulz S, McMillan WO, Jiggins CD. Clustering of loci controlling species differences in male chemical bouquets of sympatric Heliconius butterflies. Ecol Evol 2021; 11:89-107. [PMID: 33437416 PMCID: PMC7790645 DOI: 10.1002/ece3.6947] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/29/2020] [Accepted: 09/30/2020] [Indexed: 12/23/2022] Open
Abstract
The degree to which loci promoting reproductive isolation cluster in the genome-that is, the genetic architecture of reproductive isolation-can influence the tempo and mode of speciation. Tight linkage between these loci can facilitate speciation in the face of gene flow. Pheromones play a role in reproductive isolation in many Lepidoptera species, and the role of endogenously produced compounds as secondary metabolites decreases the likelihood of pleiotropy associated with many barrier loci. Heliconius butterflies use male sex pheromones to both court females (aphrodisiac wing pheromones) and ward off male courtship (male-transferred antiaphrodisiac genital pheromones), and it is likely that these compounds play a role in reproductive isolation between Heliconius species. Using a set of backcross hybrids between H. melpomene and H. cydno, we investigated the genetic architecture of putative male pheromone compound production. We found a set of 40 significant quantitative trait loci (QTL) representing 33 potential pheromone compounds. QTL clustered significantly on two chromosomes, chromosome 8 for genital compounds and chromosome 20 for wing compounds, and chromosome 20 was enriched for potential pheromone biosynthesis genes. There was minimal overlap between pheromone QTL and known QTL for mate choice and color pattern. Nonetheless, we did detect linkage between a QTL for wing androconial area and optix, a color pattern locus known to play a role in reproductive isolation in these species. This tight clustering of putative pheromone loci might contribute to coincident reproductive isolating barriers, facilitating speciation despite ongoing gene flow.
Collapse
Affiliation(s)
- Kelsey J. R. P. Byers
- Department of ZoologyUniversity of CambridgeCambridgeUK
- Smithsonian Tropical Research InstitutePanamaPanama
- Present address:
Department of Cell and Developmental BiologyJohn Innes CentreNorwichUK
| | - Kathy Darragh
- Department of ZoologyUniversity of CambridgeCambridgeUK
- Smithsonian Tropical Research InstitutePanamaPanama
- Present address:
Department of Evolution and EcologyUniversity of California DavisDavisCAUSA
| | - Sylvia Fernanda Garza
- Smithsonian Tropical Research InstitutePanamaPanama
- Present address:
Department of Collective BehaviourMax Planck Institute of Animal BehaviourKonstanzGermany
| | - Diana Abondano Almeida
- Smithsonian Tropical Research InstitutePanamaPanama
- Present address:
Institute for Ecology, Evolution and DiversityGoethe UniversitätFrankfurtGermany
| | - Ian A. Warren
- Department of ZoologyUniversity of CambridgeCambridgeUK
| | | | - Richard M. Merrill
- Smithsonian Tropical Research InstitutePanamaPanama
- Division of Evolutionary BiologyLudwig‐Maximilians‐Universität MünchenMunichGermany
| | - Stefan Schulz
- Institute of Organic ChemistryDepartment of Life SciencesTechnische Universität BraunschweigBraunschweigGermany
| | | | - Chris D. Jiggins
- Department of ZoologyUniversity of CambridgeCambridgeUK
- Smithsonian Tropical Research InstitutePanamaPanama
| |
Collapse
|
27
|
Maisonneuve L, Chouteau M, Joron M, Llaurens V. Evolution and genetic architecture of disassortative mating at a locus under heterozygote advantage. Evolution 2020; 75:149-165. [PMID: 33210282 DOI: 10.1111/evo.14129] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 11/04/2020] [Indexed: 02/02/2023]
Abstract
The evolution of mate choice is a major topic in evolutionary biology because it is thought to be a key factor in trait and species diversification. Here, we aim at uncovering the ecological conditions and genetic architecture enabling the puzzling evolution of disassortative mating based on adaptive traits. This rare form of mate choice is observed for some polymorphic traits but theoretical predictions on the emergence and persistence of this behavior are largely lacking. Thus, we developed a mathematical model to specifically understand the evolution of disassortative mating based on mimetic color pattern in the polymorphic butterfly Heliconius numata. We confirm that heterozygote advantage favors the evolution of disassortative mating and show that disassortative mating is more likely to emerge if at least one allele at the trait locus is free from any recessive deleterious mutations. We modeled different possible genetic architectures underlying mate choice behavior, such as self-referencing alleles, or specific preference or rejection alleles. Our results showed that self-referencing or rejection alleles linked to the color pattern locus enable the emergence of disassortative mating. However, rejection alleles allow the emergence of disassortative mating only when the color pattern and preference loci are tightly linked.
Collapse
Affiliation(s)
- Ludovic Maisonneuve
- Institut de Systematique, Evolution, Biodiversité (UMR7205), Museum National d'Histoire Naturelle, CNRS, Sorbonne-Université, EPHE, Université des Antilles, CP50, 57 rue Cuvier, Paris, 75005, France
| | - Mathieu Chouteau
- Laboratoire Ecologie, Evolution, Interactions Des Systèmes Amazoniens (LEEISA), USR 3456, Université De Guyane, IFREMER, CNRS Guyane, 275 route de Montabo, 97334 Cayenne, French Guiana
| | - Mathieu Joron
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France
| | - Violaine Llaurens
- Institut de Systematique, Evolution, Biodiversité (UMR7205), Museum National d'Histoire Naturelle, CNRS, Sorbonne-Université, EPHE, Université des Antilles, CP50, 57 rue Cuvier, Paris, 75005, France
| |
Collapse
|
28
|
Couto A, Wainwright JB, Morris BJ, Montgomery SH. Linking ecological specialisation to adaptations in butterfly brains and sensory systems. Curr Opin Insect Sci 2020; 42:55-60. [PMID: 32979531 DOI: 10.1016/j.cois.2020.09.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2020] [Revised: 07/27/2020] [Accepted: 09/07/2020] [Indexed: 06/11/2023]
Abstract
Butterflies display incredible ecological and behavioural diversity. As such, they have been subject to intense study since the birth of evolutionary biology. However, with some possible exceptions, they are underused models in comparative and functional neurobiology. We highlight a series of areas, spanning sensory ecology to cognition, in which butterflies are particularly promising systems for investigating the neurobiological basis for behavioural or ecological variation. These fields benefit from a history of molecular and quantitative genetics, and basic comparative neuroanatomy, but these strands of research are yet to be widely integrated. We discuss areas for potential growth and argue that new experimental techniques, growing genomic resources, and tools for functional genetics will accelerate the use of butterflies in neurobiology.
Collapse
Affiliation(s)
- Antoine Couto
- School of Biological Sciences, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK
| | - J Benito Wainwright
- School of Biological Sciences, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK
| | - Billy J Morris
- Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, UK
| | - Stephen H Montgomery
- School of Biological Sciences, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK.
| |
Collapse
|
29
|
Rossi M, Hausmann AE, Thurman TJ, Montgomery SH, Papa R, Jiggins CD, McMillan WO, Merrill RM. Visual mate preference evolution during butterfly speciation is linked to neural processing genes. Nat Commun 2020; 11:4763. [PMID: 32958765 PMCID: PMC7506007 DOI: 10.1038/s41467-020-18609-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Accepted: 08/26/2020] [Indexed: 02/06/2023] Open
Abstract
Many animal species remain separate not because their individuals fail to produce viable hybrids but because they "choose" not to mate. However, we still know very little of the genetic mechanisms underlying changes in these mate preference behaviours. Heliconius butterflies display bright warning patterns, which they also use to recognize conspecifics. Here, we couple QTL for divergence in visual preference behaviours with population genomic and gene expression analyses of neural tissue (central brain, optic lobes and ommatidia) across development in two sympatric Heliconius species. Within a region containing 200 genes, we identify five genes that are strongly associated with divergent visual preferences. Three of these have previously been implicated in key components of neural signalling (specifically an ionotropic glutamate receptor and two regucalcins), and overall our candidates suggest shifts in behaviour involve changes in visual integration or processing. This would allow preference evolution without altering perception of the wider environment.
Collapse
Affiliation(s)
- Matteo Rossi
- Division of Evolutionary Biology, LMU, Munich, Germany.
- Smithsonian Tropical Research Institute, Panama City, Panama.
| | | | - Timothy J Thurman
- Smithsonian Tropical Research Institute, Panama City, Panama
- Division of Biological Sciences, University of Montana, Montana, USA
| | | | - Riccardo Papa
- Smithsonian Tropical Research Institute, Panama City, Panama
- Department of Biology, University of Puerto Rico, San Juan, Puerto Rico
- Molecular Sciences and Research Center, University of Puerto Rico, San Juan, Puerto Rico
| | - Chris D Jiggins
- Smithsonian Tropical Research Institute, Panama City, Panama
- Department of Zoology, University of Cambridge, Cambridge, UK
| | - W Owen McMillan
- Smithsonian Tropical Research Institute, Panama City, Panama
| | - Richard M Merrill
- Division of Evolutionary Biology, LMU, Munich, Germany.
- Smithsonian Tropical Research Institute, Panama City, Panama.
| |
Collapse
|
30
|
Jamie GA, Meier JI. The Persistence of Polymorphisms across Species Radiations. Trends Ecol Evol 2020; 35:795-808. [DOI: 10.1016/j.tree.2020.04.007] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 04/08/2020] [Accepted: 04/16/2020] [Indexed: 12/12/2022]
|
31
|
Rosser N, Queste LM, Cama B, Edelman NB, Mann F, Mori Pezo R, Morris J, Segami C, Velado P, Schulz S, Mallet JLB, Dasmahapatra KK. Geographic contrasts between pre- and postzygotic barriers are consistent with reinforcement in Heliconius butterflies. Evolution 2020; 73:1821-1838. [PMID: 31334832 PMCID: PMC6771877 DOI: 10.1111/evo.13804] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2018] [Revised: 05/15/2019] [Accepted: 05/20/2019] [Indexed: 12/20/2022]
Abstract
Identifying the traits causing reproductive isolation and the order in which they evolve is fundamental to understanding speciation. Here, we quantify prezygotic and intrinsic postzygotic isolation among allopatric, parapatric, and sympatric populations of the butterflies Heliconius elevatus and Heliconius pardalinus. Sympatric populations from the Amazon (H. elevatus and H. p. butleri) exhibit strong prezygotic isolation and rarely mate in captivity; however, hybrids are fertile. Allopatric populations from the Amazon (H. p. butleri) and Andes (H. p. sergestus) mate freely when brought together in captivity, but the female F1 hybrids are sterile. Parapatric populations (H. elevatus and H. p. sergestus) exhibit both assortative mating and sterility of female F1s. Assortative mating in sympatric populations is consistent with reinforcement in the face of gene flow, where the driving force, selection against hybrids, is due to disruption of mimicry and other ecological traits rather than hybrid sterility. In contrast, the lack of assortative mating and hybrid sterility observed in allopatric populations suggests that geographic isolation enables the evolution of intrinsic postzygotic reproductive isolation. Our results show how the types of reproductive barriers that evolve between species may depend on geography.
Collapse
Affiliation(s)
- Neil Rosser
- Department of Biology, University of York, Wentworth Way, Heslington, YO10 5DD, United Kingdom.,Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138
| | - Lucie M Queste
- Department of Biology, University of York, Wentworth Way, Heslington, YO10 5DD, United Kingdom
| | - Bruna Cama
- Department of Biology, University of York, Wentworth Way, Heslington, YO10 5DD, United Kingdom
| | - Nathaniel B Edelman
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138
| | - Florian Mann
- Institut für Organische Chemie, Technische Universität Braunschweig, Hagenring 30, 38106, Braunschweig, Germany
| | - Ronald Mori Pezo
- URKU Estudios Amazónicos, Jr. Saposoa 181, Tarapoto, San Martín, Perú
| | - Jake Morris
- Department of Biology, University of York, Wentworth Way, Heslington, YO10 5DD, United Kingdom
| | - Carolina Segami
- Department of Ecology and Genetics, Uppsala University, Norbyvägen 18d, 75236, Uppsala, Sweden
| | - Patricia Velado
- Department for Quality Assurance Analytics, Bavarian State Research Center for Agriculture, Lange Point 6, 85354, Freising, Germany
| | - Stefan Schulz
- Institut für Organische Chemie, Technische Universität Braunschweig, Hagenring 30, 38106, Braunschweig, Germany
| | - James L B Mallet
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138
| | - Kanchon K Dasmahapatra
- Department of Biology, University of York, Wentworth Way, Heslington, YO10 5DD, United Kingdom
| |
Collapse
|
32
|
Lewis JJ, Van Belleghem SM. Mechanisms of Change: A Population-Based Perspective on the Roles of Modularity and Pleiotropy in Diversification. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.00261] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
|
33
|
Guo K, Chen C, Liang XF, Qu YF, Ji X. Female northern grass lizards judge mates by body shape to reinforce local adaptation. Front Zool 2020; 17:22. [PMID: 32774436 PMCID: PMC7409496 DOI: 10.1186/s12983-020-00367-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 07/24/2020] [Indexed: 12/03/2022] Open
Abstract
Background Identifying the factors that contribute to divergence among populations in mate preferences is important for understanding of the manner in which premating reproductive isolation might arise and how this isolation may in turn contribute to the evolutionary process of population divergence. Here, we offered female northern grass lizards (Takydromus septentrionalis) a choice of males between their own population and another four populations to test whether the preferences that females display in the mating trials correlate with phenotypic adaptation to local environments, or to the neutral genetic distance measured by divergence of mitochondrial DNA sequence loci. Results Females showed a strong preference for native over foreign males. Females that mated with native versus foreign males did not differ from each other in mating latency, or copulation duration. From results of the structural equation modelling we knew that: 1) geographical distance directly contributed to genetic differentiation and environmental dissimilarity; 2) genetic differentiation and environmental dissimilarity indirectly contributed to female mate preference, largely through their effects on morphological divergence; and 3) females judged mates by body shape (appearance) and discriminated more strongly against morphologically less familiar allopatric males. Conclusions Local adaptation rather than neutral genetic distance influences female mate preference in T. septentrionalis. The tendency to avoid mating with foreign males may indicate that, in T. septentrionalis, local adaptations are more valuable than genetic novelties. Our results highlight the importance of comprehensive studies integrating ecological, molecular and behavioral approaches to understand population divergence in female mate preferences as the consequence of local adaptations.
Collapse
Affiliation(s)
- Kun Guo
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, 210023 Jiangsu China
| | - Chen Chen
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, 210023 Jiangsu China
| | - Xiao-Fang Liang
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, 210023 Jiangsu China
| | - Yan-Fu Qu
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, 210023 Jiangsu China
| | - Xiang Ji
- Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, 210023 Jiangsu China
| |
Collapse
|
34
|
McMillan WO, Livraghi L, Concha C, Hanly JJ. From Patterning Genes to Process: Unraveling the Gene Regulatory Networks That Pattern Heliconius Wings. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.00221] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
|
35
|
van Schooten B, Meléndez-Rosa J, Van Belleghem SM, Jiggins CD, Tan JD, McMillan WO, Papa R. Divergence of chemosensing during the early stages of speciation. Proc Natl Acad Sci U S A 2020; 117:16438-16447. [PMID: 32601213 PMCID: PMC7371972 DOI: 10.1073/pnas.1921318117] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Chemosensory communication is essential to insect biology, playing indispensable roles during mate-finding, foraging, and oviposition behaviors. These traits are particularly important during speciation, where chemical perception may serve to establish species barriers. However, identifying genes associated with such complex behavioral traits remains a significant challenge. Through a combination of transcriptomic and genomic approaches, we characterize the genetic architecture of chemoperception and the role of chemosensing during speciation for a young species pair of Heliconius butterflies, Heliconius melpomene and Heliconius cydno We provide a detailed description of chemosensory gene-expression profiles as they relate to sensory tissue (antennae, legs, and mouthparts), sex (male and female), and life stage (unmated and mated female butterflies). Our results untangle the potential role of chemical communication in establishing barriers during speciation and identify strong candidate genes for mate and host plant choice behaviors. Of the 252 chemosensory genes, HmOBP20 (involved in volatile detection) and HmGr56 (a putative synephrine-related receptor) emerge as strong candidates for divergence in pheromone detection and host plant discrimination, respectively. These two genes are not physically linked to wing-color pattern loci or other genomic regions associated with visual mate preference. Altogether, our results provide evidence for chemosensory divergence between H. melpomene and H. cydno, two rarely hybridizing butterflies with distinct mate and host plant preferences, a finding that supports a polygenic architecture of species boundaries.
Collapse
Affiliation(s)
- Bas van Schooten
- Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00925;
- Smithsonian Tropical Research Institution, Balboa Ancón, 0843-03092 Panama, Republic of Panama
| | - Jesyka Meléndez-Rosa
- Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00925;
| | - Steven M Van Belleghem
- Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00925
| | - Chris D Jiggins
- Department of Zoology, University of Cambridge, CB2 8PQ Cambridge, United Kingdom
| | | | - W Owen McMillan
- Smithsonian Tropical Research Institution, Balboa Ancón, 0843-03092 Panama, Republic of Panama
| | - Riccardo Papa
- Department of Biology, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00925;
- Smithsonian Tropical Research Institution, Balboa Ancón, 0843-03092 Panama, Republic of Panama
- Molecular Sciences and Research Center, University of Puerto Rico, San Juan, Puerto Rico 00907
| |
Collapse
|
36
|
Perini S, Rafajlović M, Westram AM, Johannesson K, Butlin RK. Assortative mating, sexual selection, and their consequences for gene flow in Littorina. Evolution 2020; 74:1482-1497. [PMID: 32472616 DOI: 10.1111/evo.14027] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 05/07/2020] [Accepted: 05/21/2020] [Indexed: 01/01/2023]
Abstract
When divergent populations are connected by gene flow, the establishment of complete reproductive isolation usually requires the joint action of multiple barrier effects. One example where multiple barrier effects are coupled consists of a single trait that is under divergent natural selection and also mediates assortative mating. Such multiple-effect traits can strongly reduce gene flow. However, there are few cases where patterns of assortative mating have been described quantitatively and their impact on gene flow has been determined. Two ecotypes of the coastal marine snail, Littorina saxatilis, occur in North Atlantic rocky-shore habitats dominated by either crab predation or wave action. There is evidence for divergent natural selection acting on size, and size-assortative mating has previously been documented. Here, we analyze the mating pattern in L. saxatilis with respect to size in intensively sampled transects across boundaries between the habitats. We show that the mating pattern is mostly conserved between ecotypes and that it generates both assortment and directional sexual selection for small male size. Using simulations, we show that the mating pattern can contribute to reproductive isolation between ecotypes but the barrier to gene flow is likely strengthened more by sexual selection than by assortment.
Collapse
Affiliation(s)
- Samuel Perini
- Department of Marine Sciences, Tjärnö Marine Laboratory, University of Gothenburg, Strömstad, 45296, Sweden
| | - Marina Rafajlović
- Department of Marine Sciences, University of Gothenburg, Gothenburg, 40530, Sweden
| | | | - Kerstin Johannesson
- Department of Marine Sciences, Tjärnö Marine Laboratory, University of Gothenburg, Strömstad, 45296, Sweden
| | - Roger K Butlin
- Department of Marine Sciences, Tjärnö Marine Laboratory, University of Gothenburg, Strömstad, 45296, Sweden.,Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S102TN, United Kingdom
| |
Collapse
|
37
|
Massey JH, Rice GR, Firdaus AS, Chen CY, Yeh SD, Stern DL, Wittkopp PJ. Co-evolving wing spots and mating displays are genetically separable traits in Drosophila. Evolution 2020; 74:1098-1111. [PMID: 32363590 DOI: 10.1111/evo.13990] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 03/28/2020] [Accepted: 04/27/2020] [Indexed: 02/06/2023]
Abstract
The evolution of sexual traits often involves correlated changes in morphology and behavior. For example, in Drosophila, divergent mating displays are often accompanied by divergent pigment patterns. To better understand how such traits co-evolve, we investigated the genetic basis of correlated divergence in wing pigmentation and mating display between the sibling species Drosophila elegans and Drosophila gunungcola. Drosophila elegans males have an area of black pigment on their wings known as a wing spot and appear to display this spot to females by extending their wings laterally during courtship. By contrast, D. gunungcola lost both of these traits. Using Multiplexed Shotgun Genotyping (MSG), we identified a ∼440 kb region on the X chromosome that behaves like a genetic switch controlling the presence or absence of male-specific wing spots. This region includes the candidate gene optomotor-blind (omb), which plays a critical role in patterning the Drosophila wing. The genetic basis of divergent wing display is more complex, with at least two loci on the X chromosome and two loci on autosomes contributing to its evolution. Introgressing the X-linked region affecting wing spot development from D. gunungcola into D. elegans reduced pigmentation in the wing spots but did not affect the wing display, indicating that these are genetically separable traits. Consistent with this observation, broader sampling of wild D. gunungcola populations confirmed that the wing spot and wing display are evolving independently: some D. gunungcola males performed wing displays similar to D. elegans despite lacking wing spots. These data suggest that correlated selection pressures rather than physical linkage or pleiotropy are responsible for the coevolution of these morphological and behavioral traits. They also suggest that the change in morphology evolved prior to the change in behavior.
Collapse
Affiliation(s)
- Jonathan H Massey
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, 48109.,Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, 20147
| | - Gavin R Rice
- Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, 15260
| | - Anggun S Firdaus
- Department of Life Sciences, National Central University, Taoyuan, 32001, Taiwan
| | - Chi-Yang Chen
- Department of Life Sciences, National Central University, Taoyuan, 32001, Taiwan
| | - Shu-Dan Yeh
- Department of Life Sciences, National Central University, Taoyuan, 32001, Taiwan
| | - David L Stern
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, 20147
| | - Patricia J Wittkopp
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, 48109.,Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan, 48109
| |
Collapse
|
38
|
González-Rojas MF, Darragh K, Robles J, Linares M, Schulz S, McMillan WO, Jiggins CD, Pardo-Diaz C, Salazar C. Chemical signals act as the main reproductive barrier between sister and mimetic Heliconius butterflies. Proc Biol Sci 2020; 287:20200587. [PMID: 32370676 PMCID: PMC7282924 DOI: 10.1098/rspb.2020.0587] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Colour pattern is the main trait that drives mate recognition between Heliconius species that are phylogenetically close. However, when this cue is compromised such as in cases of mimetic, sympatric and closely related species, alternative mating signals must evolve to ensure reproductive isolation and species integrity. The closely related species Heliconius melpomene malleti and H. timareta florencia occur in the same geographical region, and despite being co-mimics, they display strong reproductive isolation. In order to test which cues differ between species, and potentially contribute to reproductive isolation, we quantified differences in the wing phenotype and the male chemical profile. As expected, the wing colour pattern was indistinguishable between the two species, while the chemical profile of the androconial and genital males' extracts showed marked differences. We then conducted behavioural experiments to study the importance of these signals in mate recognition by females. In agreement with our previous results, we found that chemical blends and not wing colour pattern drive the preference of females for conspecific males. Also, experiments with hybrid males and females suggested an important genetic component for both chemical production and preference. Altogether, these results suggest that chemicals are the major reproductive barrier opposing gene flow between these two sister and co-mimic species.
Collapse
Affiliation(s)
- M F González-Rojas
- Department of Biology, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota 111221, Colombia
| | - K Darragh
- Department of Zoology, University of Cambridge, Cambridge, Cambridgeshire CB2 3EJ, UK
| | - J Robles
- Department of Chemistry, Pontificia Universidad Javeriana, Bogota, Colombia
| | - M Linares
- Department of Biology, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota 111221, Colombia
| | - S Schulz
- Institute of Organic Chemistry, Technische Universität Braunschweig, Braunschweig, Germany
| | | | - C D Jiggins
- Department of Zoology, University of Cambridge, Cambridge, Cambridgeshire CB2 3EJ, UK
| | - C Pardo-Diaz
- Department of Biology, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota 111221, Colombia
| | - C Salazar
- Department of Biology, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota 111221, Colombia
| |
Collapse
|
39
|
Darragh K, Montejo‐Kovacevich G, Kozak KM, Morrison CR, Figueiredo CME, Ready JS, Salazar C, Linares M, Byers KJRP, Merrill RM, McMillan WO, Schulz S, Jiggins CD. Species specificity and intraspecific variation in the chemical profiles of Heliconius butterflies across a large geographic range. Ecol Evol 2020; 10:3895-3918. [PMID: 32489619 PMCID: PMC7244815 DOI: 10.1002/ece3.6079] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Revised: 01/06/2020] [Accepted: 01/07/2020] [Indexed: 02/01/2023] Open
Abstract
In many animals, mate choice is important for the maintenance of reproductive isolation between species. Traits important for mate choice and behavioral isolation are predicted to be under strong stabilizing selection within species; however, such traits can also exhibit variation at the population level driven by neutral and adaptive evolutionary processes. Here, we describe patterns of divergence among androconial and genital chemical profiles at inter- and intraspecific levels in mimetic Heliconius butterflies. Most variation in chemical bouquets was found between species, but there were also quantitative differences at the population level. We found a strong correlation between interspecific chemical and genetic divergence, but this correlation varied in intraspecific comparisons. We identified "indicator" compounds characteristic of particular species that included compounds already known to elicit a behavioral response, suggesting an approach for identification of candidate compounds for future behavioral studies in novel systems. Overall, the strong signal of species identity suggests a role for these compounds in species recognition, but with additional potentially neutral variation at the population level.
Collapse
Affiliation(s)
- Kathy Darragh
- Department of ZoologyUniversity of CambridgeCambridgeUK
- Smithsonian Tropical Research InstitutePanama CityPanama
| | | | | | - Colin R. Morrison
- Smithsonian Tropical Research InstitutePanama CityPanama
- Department of Integrative BiologyThe University of Texas at AustinAustinTXUSA
| | | | - Jonathan S. Ready
- Institute for Biological SciencesUniversidade Federal do ParáBelémBrazil
| | - Camilo Salazar
- Biology ProgramFaculty of Natural Sciences and MathematicsUniversidad del RosarioBogotaColombia
| | - Mauricio Linares
- Biology ProgramFaculty of Natural Sciences and MathematicsUniversidad del RosarioBogotaColombia
| | - Kelsey J. R. P. Byers
- Department of ZoologyUniversity of CambridgeCambridgeUK
- Smithsonian Tropical Research InstitutePanama CityPanama
| | - Richard M. Merrill
- Smithsonian Tropical Research InstitutePanama CityPanama
- Division of Evolutionary BiologyFaculty of BiologyLudwig‐Maximilians‐Universität MünchenMunichGermany
| | | | - Stefan Schulz
- Institute of Organic ChemistryTechnische Universität BraunschweigBraunschweigGermany
| | - Chris D. Jiggins
- Department of ZoologyUniversity of CambridgeCambridgeUK
- Smithsonian Tropical Research InstitutePanama CityPanama
| |
Collapse
|
40
|
Mérot C, Debat V, Le Poul Y, Merrill RM, Naisbit RE, Tholance A, Jiggins CD, Joron M. Hybridization and transgressive exploration of colour pattern and wing morphology in Heliconius butterflies. J Evol Biol 2020; 33:942-956. [PMID: 32255231 DOI: 10.1111/jeb.13626] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Revised: 03/21/2020] [Accepted: 03/24/2020] [Indexed: 12/19/2022]
Abstract
Hybridization can generate novel phenotypes distinct from those of parental lineages, a phenomenon known as transgressive trait variation. Transgressive phenotypes might negatively or positively affect hybrid fitness, and increase available variation. Closely related species of Heliconius butterflies regularly produce hybrids in nature, and hybridization is thought to play a role in the diversification of novel wing colour patterns despite strong stabilizing selection due to interspecific mimicry. Here, we studied wing phenotypes in first- and second-generation hybrids produced by controlled crosses between either two co-mimetic species of Heliconius or between two nonmimetic species. We quantified wing size, shape and colour pattern variation and asked whether hybrids displayed transgressive wing phenotypes. Discrete traits underlain by major-effect loci, such as the presence or absence of colour patches, generate novel phenotypes. For quantitative traits, such as wing shape or subtle colour pattern characters, hybrids only exceed the parental range in specific dimensions of the morphological space. Overall, our study addresses some of the challenges in defining and measuring phenotypic transgression for multivariate traits and our data suggest that the extent to which transgressive trait variation in hybrids contributes to phenotypic diversity depends on the complexity and the genetic architecture of the traits.
Collapse
Affiliation(s)
- Claire Mérot
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France.,IBIS, Université Laval, Québec, QC, Canada
| | - Vincent Debat
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Yann Le Poul
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France.,Division of Evolutionary Biology, Ludwig-Maximilians-Universität, München, Germany
| | - Richard M Merrill
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität, München, Germany.,Department of Zoology, University of Cambridge, Cambridge, UK.,Smithsonian Tropical Research Institute, Panama City, Panama
| | - Russell E Naisbit
- Smithsonian Tropical Research Institute, Panama City, Panama.,Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland
| | - Adélie Tholance
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Chris D Jiggins
- Department of Zoology, University of Cambridge, Cambridge, UK.,Smithsonian Tropical Research Institute, Panama City, Panama
| | - Mathieu Joron
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France.,UMR 5175, CNRS-Centre d'Ecologie Fonctionnelle et Evolutive, Montpellier, France
| |
Collapse
|
41
|
Feller AF, Haesler MP, Peichel CL, Seehausen O. Genetic architecture of a key reproductive isolation trait differs between sympatric and non-sympatric sister species of Lake Victoria cichlids. Proc Biol Sci 2020; 287:20200270. [PMID: 32259470 PMCID: PMC7209058 DOI: 10.1098/rspb.2020.0270] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
One hallmark of the East African cichlid radiations is the rapid evolution of reproductive isolation that is robust to full sympatry of many closely related species. Theory predicts that species persistence and speciation in sympatry with gene flow are facilitated if loci of large effect or physical linkage (or pleiotropy) underlie traits involved in reproductive isolation. Here, we investigate the genetic architecture of a key trait involved in behavioural isolation, male nuptial coloration, by crossing two sister species pairs of Lake Victoria cichlids of the genus Pundamilia and mapping nuptial coloration in the F2 hybrids. One is a young sympatric species pair, representative of an axis of colour motif differentiation, red-dorsum versus blue, that is highly recurrent in closely related sympatric species. The other is a species pair representative of colour motifs, red-chest versus blue, that are common in allopatric but uncommon in sympatric closely related species. We find significant quantitative trait loci (QTLs) with moderate to large effects (some overlapping) for red and yellow in the sympatric red-dorsum × blue cross, whereas we find no significant QTLs in the non-sympatric red-chest × blue cross. These findings are consistent with theory predicting that large effect loci or linkage/pleiotropy underlying mating trait differentiation could facilitate speciation and species persistence with gene flow in sympatry.
Collapse
Affiliation(s)
- Anna F Feller
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland.,Department of Fish Ecology and Evolution, Centre of Ecology, Evolution and Biogeochemistry, EAWAG Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
| | - Marcel P Haesler
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland.,Department of Fish Ecology and Evolution, Centre of Ecology, Evolution and Biogeochemistry, EAWAG Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
| | - Catherine L Peichel
- Division of Evolutionary Ecology, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland
| | - Ole Seehausen
- Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland.,Department of Fish Ecology and Evolution, Centre of Ecology, Evolution and Biogeochemistry, EAWAG Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland
| |
Collapse
|
42
|
Shahandeh MP, Turner TL. The complex genetic architecture of male mate choice evolution between Drosophila species. Heredity (Edinb) 2020; 124:737-50. [PMID: 32203250 DOI: 10.1038/s41437-020-0309-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Revised: 03/06/2020] [Accepted: 03/06/2020] [Indexed: 12/14/2022] Open
Abstract
Mate choice behaviors are among the most important reproductive isolating barriers in many animals. Little is known about the genetic basis of reproductively isolating behaviors, but examples to date provide evidence that they can have a simple genetic basis. However, it is unclear if these results indicate that individual genes with large effects are common, or are instead due to ascertainment biases. Here, we present the results of a QTL mapping study for the most important behavioral isolating barrier between Drosophila simulans and D. sechellia: male mate choice. Our QTL results initially suggested that differences in male mate choice may be due to a couple loci with large effects. However, as we divided the largest-effect QTL using stable introgression strains, we found evidence of multiple interacting loci. We further find that separate regions of the genome control different aspects of male choice. Taken together, our results suggest that the genetic architecture of mate choice behavior, in this case, is more complex than QTL mapping suggested, highlighting potential challenges to future mapping studies. We discuss the implications of these results as they relate to signal-receiver coevolution, mate choice, and reproductive isolation.
Collapse
|
43
|
Byers KJRP, Darragh K, Musgrove J, Almeida DA, Garza SF, Warren IA, Rastas PM, Kučka M, Chan YF, Merrill RM, Schulz S, McMillan WO, Jiggins CD. A major locus controls a biologically active pheromone component in Heliconius melpomene. Evolution 2020; 74:349-364. [PMID: 31913497 PMCID: PMC7027519 DOI: 10.1111/evo.13922] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 12/20/2019] [Accepted: 01/03/2020] [Indexed: 12/23/2022]
Abstract
Understanding the production, response, and genetics of signals used in mate choice can inform our understanding of the evolution of both intraspecific mate choice and reproductive isolation. Sex pheromones are important for courtship and mate choice in many insects, but we know relatively little of their role in butterflies. The butterfly Heliconius melpomene uses a complex blend of wing androconial compounds during courtship. Electroantennography in H. melpomene and its close relative Heliconius cydno showed that responses to androconial extracts were not species specific. Females of both species responded equally strongly to extracts of both species, suggesting conservation of peripheral nervous system elements across the two species. Individual blend components provoked little to no response, with the exception of octadecanal, a major component of the H. melpomene blend. Supplementing octadecanal on the wings of octadecanal-rich H. melpomene males led to an increase in the time until mating, demonstrating the bioactivity of octadecanal in Heliconius. Using quantitative trait locus (QTL) mapping, we identified a single locus on chromosome 20 responsible for 41% of the parental species' difference in octadecanal production. This QTL does not overlap with any of the major wing color or mate choice loci, nor does it overlap with known regions of elevated or reduced FST . A set of 16 candidate fatty acid biosynthesis genes lies underneath the QTL. Pheromones in Heliconius carry information relevant for mate choice and are under simple genetic control, suggesting they could be important during speciation.
Collapse
Affiliation(s)
- Kelsey J. R. P. Byers
- Department of ZoologyUniversity of CambridgeCambridgeCB2 3EJUnited Kingdom
- Smithsonian Tropical Research InstitutePanamaPanama
| | - Kathy Darragh
- Department of ZoologyUniversity of CambridgeCambridgeCB2 3EJUnited Kingdom
- Smithsonian Tropical Research InstitutePanamaPanama
| | | | - Diana Abondano Almeida
- Smithsonian Tropical Research InstitutePanamaPanama
- Current address: Institute for Ecology, Evolution, and DiversityGoethe Universität60323FrankfurtGermany
| | - Sylvia Fernanda Garza
- Smithsonian Tropical Research InstitutePanamaPanama
- Current address: Department of Collective BehaviorMax Planck Institute of Animal Behavior78315KonstanzGermany
- Current address: Centre for the Advanced Study of Collective BehaviorUniversity of Konstanz78464KonstanzGermany
| | - Ian A. Warren
- Department of ZoologyUniversity of CambridgeCambridgeCB2 3EJUnited Kingdom
| | - Pasi M. Rastas
- Institute of BiotechnologyUniversity of Helsinki00014HelsinkiFinland
| | - Marek Kučka
- Friedrich Miescher LaboratoryMax Planck Society72076TübingenGermany
| | | | - Richard M. Merrill
- Division of Evolutionary BiologyLudwig‐Maximilians‐Universität München80539MunichGermany
| | - Stefan Schulz
- Department of Life SciencesInstitute of Organic Chemistry, Technische Universität Braunschweig38106BraunschweigGermany
| | | | - Chris D. Jiggins
- Department of ZoologyUniversity of CambridgeCambridgeCB2 3EJUnited Kingdom
- Smithsonian Tropical Research InstitutePanamaPanama
| |
Collapse
|
44
|
Brand P, Hinojosa-Díaz IA, Ayala R, Daigle M, Yurrita Obiols CL, Eltz T, Ramírez SR. The evolution of sexual signaling is linked to odorant receptor tuning in perfume-collecting orchid bees. Nat Commun 2020; 11:244. [PMID: 31932598 PMCID: PMC6957680 DOI: 10.1038/s41467-019-14162-6] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Accepted: 12/18/2019] [Indexed: 12/16/2022] Open
Abstract
Sexual signaling is an important reproductive barrier known to evolve early during the formation of new species, but the genetic mechanisms that facilitate the divergence of sexual signals remain elusive. Here we isolate a gene linked to the rapid evolution of a signaling trait in a pair of nascent neotropical orchid bee lineages, Euglossa dilemma and E. viridissima. Male orchid bees acquire chemical compounds from their environment to concoct species-specific perfumes to later expose during courtship. We find that the two lineages acquire chemically distinct perfumes and are reproductively isolated despite low levels of genome-wide differentiation. Remarkably, variation in perfume chemistry coincides with rapid divergence in few odorant receptor (OR) genes. Using functional assays, we demonstrate that the derived variant of Or41 in E. dilemma is specific towards its species-specific major perfume compound, whereas the ancestral variant in E. viridissima is broadly tuned to multiple odorants. Our results show that OR evolution likely played a role in the divergence of sexual communication in natural populations.
Collapse
Affiliation(s)
- Philipp Brand
- Department of Evolution and Ecology, Center for Population Biology, University of California, 1 Shields Avenue, 95616, Davis, California, USA.
- Laboratory of Neurophysiology and Behavior, The Rockefeller University, 1230 York Avenue, 10065, New York, New York, USA.
| | - Ismael A Hinojosa-Díaz
- Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n Ciudad Universitaria Delegación Coyoacán, Apartado Postal 70-153, Ciudad de México, 04510, Mexico
| | - Ricardo Ayala
- Estación de Biología Chamela, Instituto de Biología, Universidad Nacional Autónoma de México, Apartado Postal 21, San Patricio, Jalisco, 48980, Mexico
| | - Michael Daigle
- Department of Evolution and Ecology, Center for Population Biology, University of California, 1 Shields Avenue, 95616, Davis, California, USA
| | - Carmen L Yurrita Obiols
- Centro de Estudios Conservacionistas, Universidad de San Carlos de Guatemala, Avenida La Reforma, 0-63, Guatemala, 01000, Guatemala
| | - Thomas Eltz
- Department of Animal Ecology, Evolution and Biodiversity, Ruhr University Bochum, Universitätsstrasse 150, 44801, Bochum, Germany
| | - Santiago R Ramírez
- Department of Evolution and Ecology, Center for Population Biology, University of California, 1 Shields Avenue, 95616, Davis, California, USA.
| |
Collapse
|
45
|
Mansourian S, Fandino RA, Riabinina O. Progress in the use of genetic methods to study insect behavior outside Drosophila. Curr Opin Insect Sci 2019; 36:45-56. [PMID: 31494407 DOI: 10.1016/j.cois.2019.08.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2019] [Revised: 07/20/2019] [Accepted: 08/02/2019] [Indexed: 06/10/2023]
Abstract
In the span of a decade we have seen a rapid progress in the application of genetic tools and genome editing approaches in 'non-model' insects. It is now possible to target sensory receptor genes and neurons, explore their functional roles and manipulate behavioral responses in these insects. In this review, we focus on the latest examples from Diptera, Lepidoptera and Hymenoptera of how applications of genetic tools advanced our understanding of diverse behavioral phenomena. We further discuss genetic methods that could be applied to study insect behavior in the future.
Collapse
Affiliation(s)
| | - Richard A Fandino
- Mass Spectrometry Research Group, Max Planck Institute for Chemical Ecology, Jena, Germany.
| | | |
Collapse
|
46
|
Lewis JJ, Geltman RC, Pollak PC, Rondem KE, Van Belleghem SM, Hubisz MJ, Munn PR, Zhang L, Benson C, Mazo-Vargas A, Danko CG, Counterman BA, Papa R, Reed RD. Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry. Proc Natl Acad Sci U S A 2019; 116:24174-83. [PMID: 31712408 DOI: 10.1073/pnas.1907068116] [Citation(s) in RCA: 67] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Color pattern mimicry in Heliconius butterflies is a classic case study of complex trait adaptation via selection on a few large effect genes. Association studies have linked color pattern variation to a handful of noncoding regions, yet the presumptive cis-regulatory elements (CREs) that control color patterning remain unknown. Here we combine chromatin assays, DNA sequence associations, and genome editing to functionally characterize 5 cis-regulatory elements of the color pattern gene optix We were surprised to find that the cis-regulatory architecture of optix is characterized by pleiotropy and regulatory fragility, where deletion of individual cis-regulatory elements has broad effects on both color pattern and wing vein development. Remarkably, we found orthologous cis-regulatory elements associate with wing pattern convergence of distantly related comimics, suggesting that parallel coevolution of ancestral elements facilitated pattern mimicry. Our results support a model of color pattern evolution in Heliconius where changes to ancient, multifunctional cis-regulatory elements underlie adaptive radiation.
Collapse
|
47
|
Abstract
The divergence of sexual signals is ultimately a coevolutionary process: while signals and preferences diverge between lineages, they must remain coordinated within lineages for matings to occur. Divergence in sexual signals makes a major contribution to evolving species barriers. Therefore, the genetic architecture underlying signal-preference coevolution is essential to understanding speciation but remains largely unknown. In Laupala crickets where male song pulse rate and female pulse rate preferences have coevolved repeatedly and rapidly, we tested two contrasting hypotheses for the genetic architecture underlying signal-preference coevolution: linkage disequilibrium between unlinked loci and genetic coupling (linkage disequilibrium resulting from pleiotropy of a shared locus or tight physical linkage). Through selective introgression and quantitative trait locus (QTL) fine mapping, we estimated the location of QTL underlying interspecific variation in both female preference and male pulse rate from the same mapping populations. Remarkably, map estimates of the pulse rate and preference loci are as close as 0.06 cM apart, the strongest evidence to date for genetic coupling between signal and preference loci. As the second pair of colocalizing signal and preference loci in the Laupala genome, our finding supports an intriguing pattern, pointing to a major role for genetic coupling in the quantitative evolution of a reproductive barrier and rapid speciation in Laupala. Owing to its effect on suppressing recombination, a coupled, quantitative genetic architecture offers a powerful and parsimonious genetic mechanism for signal-preference coevolution and the establishment of positive genetic covariance on which the Fisherian runaway process of sexual selection relies.
Collapse
Affiliation(s)
- Mingzi Xu
- Department of Neurobiology and Behavior, Cornell University, 215 Tower Rd, Ithaca, NY 14853, USA
| | - Kerry L Shaw
- Department of Neurobiology and Behavior, Cornell University, 215 Tower Rd, Ithaca, NY 14853, USA
| |
Collapse
|
48
|
Abstract
Evolutionary theory predicts that positive assortative mating-the tendency of similar individuals to mate with each other-plays a key role for speciation by generating reproductive isolation between diverging populations. However, comprehensive tests for an effect of assortative mating on species richness at the macroevolutionary scale are lacking. We used a meta-analytic approach to test the hypothesis that the strength of assortative mating within populations is positively related to species richness across a broad range of animal taxa. Specifically, we ran a phylogenetically independent meta-analysis using an extensive database of 1,447 effect sizes for the strength of assortative mating, encompassing 307 species from 130 families and 14 classes. Our results suggest that there is no relationship between the strength of assortative mating and species richness across and within major taxonomic groups and trait categories. Moreover, our analysis confirms an earlier finding that animals typically mate assortatively (global Pearson correlation coefficient: r=0.36; 95% confidence interval: 0.19-0.52) when accounting for phylogenetic nonindependence. We argue that future advances will rely on a better understanding of the evolutionary causes and consequences of the observed intra- and interspecific variation in the strength of assortative mating.
Collapse
|
49
|
Catalán A, Briscoe AD, Höhna S. Drift and Directional Selection Are the Evolutionary Forces Driving Gene Expression Divergence in Eye and Brain Tissue of Heliconius Butterflies. Genetics 2019; 213:581-594. [PMID: 31467133 PMCID: PMC6781903 DOI: 10.1534/genetics.119.302493] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 08/24/2019] [Indexed: 01/05/2023] Open
Abstract
Investigating gene expression evolution over micro- and macroevolutionary timescales will expand our understanding of the role of gene expression in adaptation and speciation. In this study, we characterized the evolutionary forces acting on gene expression levels in eye and brain tissue of five Heliconius butterflies with divergence times of ∼5-12 MYA. We developed and applied Brownian motion (BM) and Ornstein-Uhlenbeck (OU) models to identify genes whose expression levels are evolving through drift, stabilizing selection, or a lineage-specific shift. We found that 81% of the genes evolve under genetic drift. When testing for branch-specific shifts in gene expression, we detected 368 (16%) shift events. Genes showing a shift toward upregulation have significantly lower gene expression variance than those genes showing a shift leading toward downregulation. We hypothesize that directional selection is acting in shifts causing upregulation, since transcription is costly. We further uncovered through simulations that parameter estimation of OU models is biased when using small phylogenies and only becomes reliable with phylogenies having ≥ 50 taxa. Therefore, we developed a new statistical test based on BM to identify highly conserved genes (i.e., evolving under strong stabilizing selection), which comprised 3% of the orthoclusters. In conclusion, we found that drift is the dominant evolutionary force driving gene expression evolution in eye and brain tissue in Heliconius Nevertheless, the higher proportion of genes evolving under directional than under stabilizing selection might reflect species-specific selective pressures on vision and the brain that are necessary to fulfill species-specific requirements.
Collapse
Affiliation(s)
- Ana Catalán
- Department of Evolutionary Biology, Evolutionary Biology Centre (EBC), Uppsala University, 75236, Sweden
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried 82152, Germany
| | - Adriana D Briscoe
- Department of Ecology and Evolutionary Biology, University of California, Irvine, California 92697
| | - Sebastian Höhna
- Division of Evolutionary Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried 82152, Germany
- Department of Earth and Environmental Sciences, Paleontology and Geobiology, 80333 Munich, Germany
- GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany
| |
Collapse
|
50
|
Blankers T, Berdan EL, Hennig RM, Mayer F. Physical linkage and mate preference generate linkage disequilibrium for behavioral isolation in two parapatric crickets. Evolution 2019; 73:777-791. [PMID: 30820950 PMCID: PMC6593781 DOI: 10.1111/evo.13706] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Accepted: 02/04/2019] [Indexed: 12/23/2022]
Abstract
Behavioral isolation is a potent barrier to gene flow and a source of striking diversity in the animal kingdom. However, it remains unclear if the linkage disequilibrium (LD) between sex‐specific traits required for behavioral isolation results mostly from physical linkage between signal and preference loci or from directional mate preferences. Here, we test this in the field crickets Gryllus rubens and G. texensis. These closely related species diverged with gene flow and have strongly differentiated songs and preference functions for the mate calling song rhythm. We map quantitative trait loci for signal and preference traits (pQTL) as well as for gene expression associated with these traits (eQTL). We find strong, positive genetic covariance between song traits and between song and preference. Our results show that this is in part explained by incomplete physical linkage: although both linked pQTL and eQTL couple male and female traits, major effect loci for different traits were never on the same chromosome. We suggest that the finely tuned, highly divergent preference functions are likely an additional source of LD between male and female traits in this system. Furthermore, pleiotropy of gene expression presents an underappreciated mechanism to link sexually dimorphic phenotypes.
Collapse
Affiliation(s)
- Thomas Blankers
- Department of Behavioral Physiology, Humboldt-Universität zu Berlin, Berlin, Germany.,Leibniz Institute for Evolution and Biodiversity Science, Museum für Naturkunde Berlin, Berlin, Germany.,Current address: Department of Evolutionary and Population Biology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands
| | - Emma L Berdan
- Leibniz Institute for Evolution and Biodiversity Science, Museum für Naturkunde Berlin, Berlin, Germany.,Current address: Department of Marine Sciences, University of Gothenburg, Gothenburg, Sweden
| | - R Matthias Hennig
- Department of Behavioral Physiology, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Frieder Mayer
- Leibniz Institute for Evolution and Biodiversity Science, Museum für Naturkunde Berlin, Berlin, Germany.,Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| |
Collapse
|