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Brodie S, Smith JA, Muhling BA, Barnett LAK, Carroll G, Fiedler P, Bograd SJ, Hazen EL, Jacox MG, Andrews KS, Barnes CL, Crozier LG, Fiechter J, Fredston A, Haltuch MA, Harvey CJ, Holmes E, Karp MA, Liu OR, Malick MJ, Pozo Buil M, Richerson K, Rooper CN, Samhouri J, Seary R, Selden RL, Thompson AR, Tommasi D, Ward EJ, Kaplan IC. Recommendations for quantifying and reducing uncertainty in climate projections of species distributions. Glob Chang Biol 2022; 28:6586-6601. [PMID: 35978484 PMCID: PMC9805044 DOI: 10.1111/gcb.16371] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 07/25/2022] [Accepted: 07/27/2022] [Indexed: 05/26/2023]
Abstract
Projecting the future distributions of commercially and ecologically important species has become a critical approach for ecosystem managers to strategically anticipate change, but large uncertainties in projections limit climate adaptation planning. Although distribution projections are primarily used to understand the scope of potential change-rather than accurately predict specific outcomes-it is nonetheless essential to understand where and why projections can give implausible results and to identify which processes contribute to uncertainty. Here, we use a series of simulated species distributions, an ensemble of 252 species distribution models, and an ensemble of three regional ocean climate projections, to isolate the influences of uncertainty from earth system model spread and from ecological modeling. The simulations encompass marine species with different functional traits and ecological preferences to more broadly address resource manager and fishery stakeholder needs, and provide a simulated true state with which to evaluate projections. We present our results relative to the degree of environmental extrapolation from historical conditions, which helps facilitate interpretation by ecological modelers working in diverse systems. We found uncertainty associated with species distribution models can exceed uncertainty generated from diverging earth system models (up to 70% of total uncertainty by 2100), and that this result was consistent across species traits. Species distribution model uncertainty increased through time and was primarily related to the degree to which models extrapolated into novel environmental conditions but moderated by how well models captured the underlying dynamics driving species distributions. The predictive power of simulated species distribution models remained relatively high in the first 30 years of projections, in alignment with the time period in which stakeholders make strategic decisions based on climate information. By understanding sources of uncertainty, and how they change at different forecast horizons, we provide recommendations for projecting species distribution models under global climate change.
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Affiliation(s)
- Stephanie Brodie
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Environmental Research Division, Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationMontereyCaliforniaUSA
| | - James A. Smith
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSan DiegoCaliforniaUSA
| | - Barbara A. Muhling
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSan DiegoCaliforniaUSA
| | - Lewis A. K. Barnett
- Alaska Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | | | - Paul Fiedler
- Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSan DiegoCaliforniaUSA
| | - Steven J. Bograd
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Environmental Research Division, Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationMontereyCaliforniaUSA
| | - Elliott L. Hazen
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Environmental Research Division, Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationMontereyCaliforniaUSA
| | - Michael G. Jacox
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Environmental Research Division, Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationMontereyCaliforniaUSA
- Physical Sciences Laboratory, Earth System Research LaboratoriesNational Oceanic and Atmospheric AdministrationBoulderColoradoUSA
| | - Kelly S. Andrews
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Cheryl L. Barnes
- Cooperative Institute for Climate, Ocean, and Ecosystem StudiesUniversity of WashingtonSeattleWashingtonUSA
| | - Lisa G. Crozier
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Jerome Fiechter
- Ocean Sciences DepartmentUniversity of California Santa CruzSanta CruzCaliforniaUSA
| | - Alexa Fredston
- Ocean Sciences DepartmentUniversity of California Santa CruzSanta CruzCaliforniaUSA
- Department of Ecology, Evolution, and Natural ResourcesRutgers UniversityNew BrunswickNew JerseyUSA
| | - Melissa A. Haltuch
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Chris J. Harvey
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Elizabeth Holmes
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Melissa A. Karp
- ECS Tech, in support of, NOAA Fisheries Office of Science and TechnologySilver SpringMarylandUSA
| | - Owen R. Liu
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Michael J. Malick
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Mercedes Pozo Buil
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Environmental Research Division, Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationMontereyCaliforniaUSA
| | - Kate Richerson
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | | | - Jameal Samhouri
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Rachel Seary
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Environmental Research Division, Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationMontereyCaliforniaUSA
| | - Rebecca L. Selden
- Department of Biological SciencesWellesley CollegeWellesleyMassachusettsUSA
| | - Andrew R. Thompson
- Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSan DiegoCaliforniaUSA
| | - Desiree Tommasi
- Institute of Marine SciencesUniversity of California Santa CruzMontereyCaliforniaUSA
- Southwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSan DiegoCaliforniaUSA
| | - Eric J. Ward
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
| | - Isaac C. Kaplan
- Northwest Fisheries Science Center, National Marine Fisheries ServiceNational Oceanic and Atmospheric AdministrationSeattleWashingtonUSA
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Barnes CL, Beaudreau AH, Dorn MW, Holsman KK, Mueter FJ. Development of a predation index to assess trophic stability in the Gulf of Alaska. Ecol Appl 2020; 30:e02141. [PMID: 32400922 PMCID: PMC7583375 DOI: 10.1002/eap.2141] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 01/26/2020] [Accepted: 03/17/2020] [Indexed: 05/27/2023]
Abstract
Predation can have substantial and long-term effects on the population dynamics of ecologically important prey. Diverse predator assemblages, however, may produce stabilizing (i.e., portfolio) effects on prey mortality when consumption varies asynchronously among predators. We calculated spatiotemporal variation in predation on a dominant forage species to quantify synchrony and portfolio effects in a food web context and better understand diversity-stability relationships in a large marine ecosystem that has undergone considerable changes in community composition. We selected Walleye Pollock (Gadus chalcogrammus) as our case study because they support some of the largest, most valuable commercial fisheries in the world and serve as essential prey for an array of economically and culturally important species. Thus, there are sufficient data for Pollock with which to test ecological theories in an empirical setting. Spatially explicit predation indices accounted for annual variation in predator biomass, bioenergetics-based rations, and age-specific proportions of Pollock consumed by a suite of groundfishes in the Gulf of Alaska (1990-2015). We found that Arrowtooth Flounder (Atheresthes stomias) was, by far, the dominant Pollock predator (proportional consumption: 0.74 ± 0.14). We also found synchronous trends in consumption among predator species, indicating a lack of portfolio effects at the basin scale. This combination of a single dominant predator and synchronous consumption dynamics suggests strong top-down control over Pollock in the Gulf of Alaska, though the degree of synchrony was highly variable at all spatial scales. Whereas synchrony generally increased in the western subregion, consumption in the central Gulf of Alaska became less synchronous through time. This suggests diminished trophic stability in one area and increased stability in another, thereby emphasizing the importance of spatiotemporal heterogeneity in maintaining food web structure and function. Finally, total Pollock consumption was highly variable (ranging from 1.87 to 7.63 Tg) and often exceeded assessment-based estimates of productivity. We assert that using our holistic and empirically derived predation index as a modifier of assumed constant natural mortality would provide a practical method for incorporating ecological information into single-species stock assessments.
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Affiliation(s)
- Cheryl L. Barnes
- College of Fisheries and Ocean SciencesUniversity of Alaska Fairbanks17101 Point Lena Loop RoadJuneauAlaska99801USA
| | - Anne H. Beaudreau
- College of Fisheries and Ocean SciencesUniversity of Alaska Fairbanks17101 Point Lena Loop RoadJuneauAlaska99801USA
| | - Martin W. Dorn
- Status of Stocks and Multispecies Assessment ProgramAlaska Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric Administration7600 Sand Point Way NE, Bldg 4SeattleWashington98115USA
| | - Kirstin K. Holsman
- Resource Ecology and Ecosystem Modeling ProgramAlaska Fisheries Science CenterNational Marine Fisheries ServiceNational Oceanic and Atmospheric Administration7600 Sand Point Way NE, Bldg 4SeattleWashington98115USA
| | - Franz J. Mueter
- College of Fisheries and Ocean SciencesUniversity of Alaska Fairbanks17101 Point Lena Loop RoadJuneauAlaska99801USA
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Barnes CL, Beaudreau AH, Hunsicker ME, Ciannelli L. Assessing the potential for competition between Pacific Halibut (Hippoglossus stenolepis) and Arrowtooth Flounder (Atheresthes stomias) in the Gulf of Alaska. PLoS One 2018; 13:e0209402. [PMID: 30562389 PMCID: PMC6298734 DOI: 10.1371/journal.pone.0209402] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Accepted: 12/05/2018] [Indexed: 11/19/2022] Open
Abstract
Pacific Halibut (Hippoglossus stenolepis) support culturally and economically important fisheries in the Gulf of Alaska, though recent decreases in mean size-at-age have substantially reduced fishery yields, generating concerns among stakeholders and resource managers. Among the prevailing hypotheses for reduced size-at-age is intensified competition with Arrowtooth Flounder (Atheresthes stomias), a groundfish predator that exhibited nearly five-fold increases in biomass between the 1960s and mid-2010s. To assess the potential for competition between Pacific Halibut and Arrowtooth Flounder, we evaluated their degree of spatiotemporal and dietary overlap in the Gulf of Alaska using bottom trawl survey and food habits data provided by the Alaska Fisheries Science Center (NOAA; 1990 to 2017). We restricted analyses to fish measuring 30 to 69 cm fork length and used a delta modeling approach to quantify species-specific presence-absence and catch-per-unit-effort as a function of survey year, tow location, depth, and bottom temperature. We then calculated an index of spatial overlap across a uniform grid by multiplying standardized predictions of species’ abundance. Dietary overlap was calculated across the same uniform grid using Schoener’s similarity index. Finally, we assessed the relationship between spatial and dietary overlap as a measure of resource partitioning. We found increases in spatial overlap, moving from east to west in the Gulf of Alaska (eastern: 0.13 ± 0.20; central: 0.21 ± 0.11; western: 0.31 ± 0.13 SD). Dietary overlap was low throughout the study area (0.13 ± 0.20 SD). There was no correlation between spatial and dietary overlap, suggesting an absence of resource partitioning along the niche dimensions examined. This finding provides little indication that competition with Arrowtooth Flounder was responsible for changes in Pacific Halibut alHHsize-at-age in the Gulf of Alaska; however, it does not rule out competitive interactions that may have affected resource use prior to standardized data collection or at different spatiotemporal scales.
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Affiliation(s)
- Cheryl L. Barnes
- College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Juneau, Alaska, United States of America
- * E-mail:
| | - Anne H. Beaudreau
- College of Fisheries and Ocean Sciences, University of Alaska Fairbanks, Juneau, Alaska, United States of America
| | - Mary E. Hunsicker
- Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Newport, Oregon, United States of America
| | - Lorenzo Ciannelli
- College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, Oregon, United States of America
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Starr RM, Cortés J, Barnes CL, Green K, Breedy O. Characterization of deepwater invertebrates at Isla del Coco National Park and Las Gemelas Seamount, Costa Rica. REV BIOL TROP 2017. [DOI: 10.15517/rbt.v60i3.28406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The deepwater faunas of oceanic islands and seamounts of the Eastern Tropical Pacific are poorly known. From 11-22 September 2009, we conducted an exploration of the deepwater areas around Isla del Coco National Park and Las Gemelas Seamount, located about 50km southwest of Isla del Coco, Costa Rica using a manned submersible to survey the seafloor habitats. The goal of the exploration was to characterize the habitats and biota, and conduct quantitative surveys of the deepwater portions of Isla del Coco National Park and Las Gemelas. We completed a total of 22 successful submersible dives, spanning more than 80hr underwater, and collected a total of 36hr of video. With respect to invertebrates, our objectives were to gather quantitative information on species composition, density, distribution and habitat associations as well as to compare the invertebrate communities between the two sites. A total of 7172 invertebrates were counted from analysis of the video collected on this project. Larger organisms were counted and placed into 27 taxonomic groups to characterize the deepwater invertebrate fauna of Las Gemelas Seamount and Isla del Coco National Park. The Shannon-Weiner Index for biodiversity (H’) was calculated to be 0.14 ± 0.02 for Isla del Coco and 0.07 ± 0.03 for Las Gemelas surveys. Although richness was fairly equal between the two sites, evenness was greater at Isla del Coco (J = 0.04 ± 0.006) when compared to Las Gemelas (J = 0.02 ± 0.01). This lower level of evenness in the community at Las Gemelas was a result of high densities of a few dominant species groups, specifically sea urchins and black corals. We also evaluated invertebrate percent cover at both Isla del Coco and Las Gemelas Seamount with respect to habitat type, slope and rugosity. Results indicated that highly rugose habitats contained the highest frequencies of all invertebrates at both sites, with the exception of glass sponges and polychaetes at Isla del Coco, which were found in greater quantities at intermediate levels of rugosity. Information obtained from these submersible surveys indicate that seamounts in the tropical eastern Pacific Ocean may be an important source of biodiversity and that more quantitative surveys are needed to characterize the fauna of the region. Citation: Starr, R.M., J. Cortés, C.L. Barnes, K. Green & O. Breedy. 2012. Characterization of deepwater invertebrates at Isla del Coco National Park and Las Gemelas Seamounts, Costa Rica. Rev. Biol. Trop. 60 (Suppl. 3): 303-319. Epub 2012 Dec 01.
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Starr RM, Wendt DE, Barnes CL, Marks CI, Malone D, Waltz G, Schmidt KT, Chiu J, Launer AL, Hall NC, Yochum N. Variation in responses of fishes across multiple reserves within a network of marine protected areas in temperate waters. PLoS One 2015; 10:e0118502. [PMID: 25760856 PMCID: PMC4356516 DOI: 10.1371/journal.pone.0118502] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Accepted: 01/19/2015] [Indexed: 11/25/2022] Open
Abstract
Meta-analyses of field studies have shown that biomass, density, species richness, and size of organisms protected by no-take marine reserves generally increase over time. The magnitude and timing of changes in these response variables, however, vary greatly and depend upon the taxonomic groups protected, size and type of reserve, oceanographic regime, and time since the reserve was implemented. We conducted collaborative, fishery-independent surveys of fishes for seven years in and near newly created marine protected areas (MPAs) in central California, USA. Results showed that initially most MPAs contained more and larger fishes than associated reference sites, likely due to differences in habitat quality. The differences between MPAs and reference sites did not greatly change over the seven years of our study, indicating that reserve benefits will be slow to accumulate in California’s temperate eastern boundary current. Fishes in an older reserve that has been closed to fishing since 1973, however, were significantly more abundant and larger than those in associated reference sites. This indicates that reserve benefits are likely to accrue in the California Current ecosystem, but that 20 years or more may be needed to detect significant changes in response variables that are due to MPA implementation. Because of the high spatial and temporal variability of fish recruitment patterns, long-term monitoring is needed to identify positive responses of fishes to protection in the diverse set of habitats in a dynamic eastern boundary current. Qualitative estimates of response variables, such as would be obtained from an expert opinion process, are unlikely to provide an accurate description of MPA performance. Similarly, using one species or one MPA as an indicator is unlikely to provide sufficient resolution to accurately describe the performance of multiple MPAs.
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Affiliation(s)
- Richard M. Starr
- California Sea Grant Extension Program, Moss Landing Marine Laboratories, Moss Landing, California, United States of America
- Moss Landing Marine Laboratories, Moss Landing, California, United States of America
- * E-mail:
| | - Dean E. Wendt
- California Polytechnic University, San Luis Obispo, California, United States of America
| | - Cheryl L. Barnes
- Moss Landing Marine Laboratories, Moss Landing, California, United States of America
| | - Corina I. Marks
- Moss Landing Marine Laboratories, Moss Landing, California, United States of America
| | - Dan Malone
- University of California Santa Cruz, Santa Cruz, California, United States of America
| | - Grant Waltz
- California Polytechnic University, San Luis Obispo, California, United States of America
| | - Katherine T. Schmidt
- Moss Landing Marine Laboratories, Moss Landing, California, United States of America
| | - Jennifer Chiu
- Moss Landing Marine Laboratories, Moss Landing, California, United States of America
| | - Andrea L. Launer
- Moss Landing Marine Laboratories, Moss Landing, California, United States of America
| | - Nathan C. Hall
- California Polytechnic University, San Luis Obispo, California, United States of America
| | - Noëlle Yochum
- Oregon State University, Corvallis, Oregon, United States of America
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Ostrov DA, Barnes CL, Smith LE, Binns S, Brusko TM, Brown AC, Quint PS, Litherland SA, Roopenian DC, Iczkowski KA. Characterization of HKE2: an ancient antigen encoded in the major histocompatibility complex. ACTA ACUST UNITED AC 2007; 69:181-8. [PMID: 17257322 DOI: 10.1111/j.1399-0039.2006.00730.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Genes at the centromeric end of the human leukocyte antigen region influence adaptive autoimmune diseases and cancer. In this study, we characterized protein expression of HKE2, a gene located in the centromeric portion of the class II region of the major histocompatibility complex encoding subunit 6 of prefoldin. Immunohistochemical analysis using an anti-HKE2 antibody indicated that HKE2 protein expression is dramatically upregulated as a consequence of activation. In a tissue microarray and in several tumors, HKE2 was overexpressed in certain cancers compared with normal counterparts. The localization of the HKE2 gene to the class II region, its cytoplasmic expression and putative protein-binding domain suggest that HKE2 may function in adaptive immunity and cancer.
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Affiliation(s)
- D A Ostrov
- Department of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32610, USA.
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Affiliation(s)
- R K Murmann
- Elmer O. Schlemper X-ray Crystallographic Center, Department of Chemistry, University of Missouri, Columbia, MO 65211, USA.
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8
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Wei Y, Lu M, Cheung CF, Barnes CL, Peng Z. Functionalization of [MoW(5)O(19)](2-) with aromatic amines: synthesis of the first arylimido derivatives of mixed-metal polyoxometalates. Inorg Chem 2001; 40:5489-90. [PMID: 11599945 DOI: 10.1021/ic0155683] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Y Wei
- Department of Chemistry, University of Missouri-Kansas City, Kansas City, Missouri 64110, USA
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Harmata M, Barnes CL, Brackley J, Bohnert G, Kirchhoefer P, Kürti L, Rashatasakhon P. Generation of cyclopentadienones from 2-bromocyclopentenones. J Org Chem 2001; 66:5232-6. [PMID: 11463277 DOI: 10.1021/jo015671+] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- M Harmata
- Department of Chemistry, University of Missouri-Columbia, Columbia, Missouri 65211, USA.
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Affiliation(s)
- E Bosch
- Department of Chemistry, University of Missouri, Columbia, MO 65211, USA
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Bosch E, Barnes CL. 1,2-Bis(2-pyridylethynyl)benzene, a novel trans-chelating bipyridyl ligand. structural characterization of the complexes with silver(I) triflate and palladium(II) chloride. Inorg Chem 2001; 40:3097-100. [PMID: 11399178 DOI: 10.1021/ic010058u] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The design, synthesis, and complexation characteristics of the bipyridyl ligand 1,2-bis-(2-pyridylethynyl)benzene are described. The X-ray crystallographic characterization of the 1:1 complexes of 1,2-bis(2-pyridylethynyl)benzene with silver(I) triflate and palladium(II) chloride are described. In the X-ray crystal structure of the silver(I) triflate complex the ligand is essentially planar with negligible distortion compatible with a good fit of the cation in the "cavity" between the pyridine N atoms. Indeed the silver center is almost linear with the N(1)-Ag(1)-N(2) angle of 177.02(10) degrees. The ligand is also essentially planar in the palladium(II) chloride complex with square planar coordination about the palladium with the N(1)-Pd(1)-N(2), Cl(2)-Pd(1)-Cl(2), and N(1)-Pd(1)-Cl(2) angles at 179.53(7), 177.17(2), and 90.52(5) degrees, respectively.
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Affiliation(s)
- E Bosch
- Department of Chemistry, Southwest Missouri State University, Springfield, Missouri 65804, USA
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Schibli R, Katti KV, Volkert WA, Barnes CL. Development of novel water-soluble, organometallic compounds for potential use in nuclear medicine: synthesis, characterization, and (1)H and (31)P NMR investigations of the complexes fac-[ReBr(CO)3L] (L=bis(bis(hydroxymethyl)phosphino)ethane, bis(bis(hydroxymethyl)phosphino)benzene). Inorg Chem 2001; 40:2358-62. [PMID: 11327913 DOI: 10.1021/ic001284r] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The bidentate, water-soluble phosphine ligands, bis(bis(hydroxymethyl)phosphino)benzene (HMPB, 1) and bis(bis(hydroxymethyl)phosphino)ethane (HMPE, 2) were reacted with the organometallic precursor fac-[ReBr(3)(CO)(3)](2-), 3, to produce the complexes fac-[Re(OH(2))(CO)(3)L](+) and fac-[ReBr(CO)(3)L] (L = HMPE, HMPB), respectively, in good yields. The rhenium complexes fac-[ReBr(CO)(3)HMPB], 5, and fac-[ ReBr(CO)(3)HMPE], 8, were characterized using (1)H and (31)P NMR spectroscopy. The structure of fac-[ReBr(CO)(3)HMPB] was confirmed by single-crystal X-ray spectroscopy. The substitution reactions of HMPE/HMPB with the rhenium precursor 3 in aqueous solution were monitored using time-dependent (31)P NMR techniques. A significant discrepancy in the reaction kinetics and the substitution mechanism between the two bidentate ligands could be observed presumably due to the different chemical backbones.
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Affiliation(s)
- R Schibli
- Departments of Radiology and of Chemistry, University of Missouri-Columbia, Columbia, Missouri 65211, USA
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Wei Y, Xu B, Barnes CL, Peng Z. An efficient and convenient reaction protocol to organoimido derivatives of polyoxometalates. J Am Chem Soc 2001; 123:4083-4. [PMID: 11457161 DOI: 10.1021/ja004033q] [Citation(s) in RCA: 226] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Y Wei
- Department of Chemistry, University of Missouri-Kansas City Kansas City, Missouri 64110, USA
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Serafinowski PJ, Brown CA, Barnes CL. Synthesis of some 2'- and 3'-fluoroalkyl substituted nucleosides and oligonucleotides. Nucleosides Nucleotides Nucleic Acids 2001; 20:921-5. [PMID: 11563145 DOI: 10.1081/ncn-100002459] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- P J Serafinowski
- CRC Centre for Cancer Therapeutics, Institute of Cancer Research, Sutton, Surrey SM2 5NG, United Kingdom
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Abstract
The molecular complex formed between 4-methyltolane and bis(4-N-methylpyridinium)ethyne ditriflate is reported. The X-ray crystal structure indicates that the crystalline superstructure consists of infinite zigzag ribbons of interlocked donor-acceptor complexes separated by triflate counterions.
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Affiliation(s)
- E Bosch
- Department of Chemistry, Southwest Missouri State University, Springfield, Missouri 65804, USA.
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Fuchs T, Chowdhury G, Barnes CL, Gates KS. 3-amino-1,2,4-benzotriazine 4-oxide: characterization of a new metabolite arising from bioreductive processing of the antitumor agent 3-amino-1,2,4-benzotriazine 1,4-dioxide (tirapazamine). J Org Chem 2001; 66:107-14. [PMID: 11429885 DOI: 10.1021/jo001232j] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Tirapazamine (1) is a promising antitumor agent that selectively causes DNA damage in hypoxic tumor cells, following one-electron bioreductive activation. Surprisingly, after more than 10 years of study, the products arising from bioreductive metabolism of tirapazamine have not been completely characterized. The two previously characterized metabolites are 3-amino-1,2,4-benzotriazine 1-oxide (3) and 3-amino-1,2,4-benzotriazine (5). In this work, 3-amino-1,2,4-benzotriazine 4-oxide (4) is identified for the first time as a product resulting from one-electron activation of the antitumor agent tirapazamine by the enzymes xanthine/xanthine oxidase and NADPH:cytochrome P450 oxidoreductase. As part of this work, the novel N-oxide (4) was unambiguously synthesized and characterized using NMR spectroscopy, UV-vis spectroscopy, LC/MS, and X-ray crystallography. Under conditions where the parent drug tirapazamine is enzymatically activated, the metabolite 4 is produced but readily undergoes further reduction to the benzotriazine (5). Thus, under circumstances where extensive reductive metabolism occurs, the yield of the 4-oxide (4) decreases. In contrast, the isomeric two-electron reduction product 3-amino-1,2,4-benzotriazine 1-oxide (3) does not readily undergo enzymatic reduction and, therefore, is found as a major bioreductive metabolite under all conditions. Finally, the ability of the 4-oxide metabolite (4) to participate in tirapazamine-mediated DNA damage is considered.
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Affiliation(s)
- T Fuchs
- Departments of Chemistry and Biochemistry, University of Missouri-Columbia, Columbia, Missouri 65211, USA
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Rodríguez AD, Soto JJ, Barnes CL. Synthesis of uprolide D-G analogues. Revision of structure of the marine cembranolides uprolide F diacetate and uprolide G acetate. J Org Chem 2000; 65:7700-2. [PMID: 11076639 DOI: 10.1021/jo000996w] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- A D Rodríguez
- Department of Chemistry, University of Puerto Rico, P.O. Box 23346, U.P.R. Station, San Juan, Puerto Rico 00931-3346, USA.
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Rodríguez AD, Ramírez C, Rodríguez II, Barnes CL. Novel terpenoids from the West Indian sea whip Pseudopterogorgia elisabethae (Bayer). Elisapterosins A and B: rearranged diterpenes possessing an unprecedented cagelike framework. J Org Chem 2000; 65:1390-8. [PMID: 10814100 DOI: 10.1021/jo9914869] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Four diterpenes and a nor-diterpenoid, all of which possess unusual carbocyclic skeletons, were isolated from the hexane solubles of the West Indian gorgonian Pseudopterogorgia elisabethae. The structures and relative configurations of novel metabolites elisabethin D (2), elisabethin D acetate (3), 3-epi-elisabanolide (5), elisapterosin A (6), and elisapterosin B (7) were elucidated by interpretation of overall spectral data, which included 2D NMR correlation methods, IR, UV, and accurate mass measurements (HREI-MS and HRFAB-MS), chemical reactions, and X-ray diffraction analyses. The tetracyclic carbon skeleton of the elisapterosins is undescribed and constitutes a new class of C(20) rearranged diterpenes. Elisapterosin B displays strong in vitro anti-tuberculosis activity.
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Affiliation(s)
- A D Rodríguez
- Department of Chemistry, University of Puerto Rico, P.O. Box 23346, San Juan, Puerto Rico 00931-3346, USA.
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19
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Abstract
The 2.1 A resolution crystal structure of flavin reductase P with the inhibitor nicotinamide adenine dinucleotide (NAD) bound in the active site has been determined. NAD adopts a novel, folded conformation in which the nicotinamide and adenine rings stack in parallel with an inter-ring distance of 3.6 A. The pyrophosphate binds next to the flavin cofactor isoalloxazine, while the stacked nicotinamide/adenine moiety faces away from the flavin. The observed NAD conformation is quite different from the extended conformations observed in other enzyme/NAD(P) structures; however, it resembles the conformation proposed for NAD in solution. The flavin reductase P/NAD structure provides new information about the conformational diversity of NAD, which is important for understanding catalysis. This structure offers the first crystallographic evidence of a folded NAD with ring stacking, and it is the first enzyme structure containing an FMN cofactor interacting with NAD(P). Analysis of the structure suggests a possible dynamic mechanism underlying NADPH substrate specificity and product release that involves unfolding and folding of NADP(H).
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Affiliation(s)
- J J Tanner
- Department of Chemistry, University of Missouri-Columbia 65211, USA
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20
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Rodríguez AD, Cóbar OM, Padilla OL, Barnes CL. Calyxamines A and B, novel piperidine alkaloids from the Caribbean sea sponge Calyx podatypa. J Nat Prod 1997; 60:1331-1333. [PMID: 9428165 DOI: 10.1021/np970328e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Calyxamines A (1) and B (2) are 2,2,4,6,6-pentasubstituted piperidine alkaloids possessing novel carbon skeletons isolated from the marine sponge Calyx podatypa collected in Puerto Rico. Their structures, after derivatization with trifluoroacetic acid, have been determined by a combination of X-ray and spectroscopic methods. A plausible biogenetic pathway to the calyxamines is suggested.
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Affiliation(s)
- A D Rodríguez
- Department of Chemistry, University of Puerto Rico, Río Piedras 00931-3346, USA.
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Affiliation(s)
- P W Stacpoole
- Department of Medicine (Division of Endocrinology and Metabolism), University of Florida, College of Medicine, Gainesville, USA
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Abstract
The title compound, C15H9BrN2O3S, was isolated as an unexpected product from the reaction of the anion of sodium 2-(1,3-benzothiazolyl)ethanonitrile with alpha,2-dibromo-5-nitrotoluene. Its structure features a benzothiazole fragment and a bromo- and nitro-substituted phenyl ring linked by a methyl ketone group. The dihedral angle between the benzothiazole and phenyl rings is 103.7 (2) degrees. The benzothiazole fragment is planar, with a maximum deviation of 0.021 (2) A. The nitro group is slightly rotated out of the phenyl-ring plane, with a O(2)-N(2)-C(14)-C(15) torsion angle of 16.4(7) degrees.
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Affiliation(s)
- T Ruiwu
- Department of Physics, University of Puerto Rico, San Juan 00931, USA
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Abstract
Thirty-one consecutive open fractures of the tibia were reviewed prospectively. Duration from injury until last examination averaged 3.7 years. The patients were divided into 2 groups for comparison: Group A consisted of children younger than 12 years of age and Group B of patients 12 years of age or older. The fractures were graded according to the system of Gustilo and Anderson. The severity of patient injuries in each group was similar. The treatments were likewise similar, but for all parameters studied, the younger patients fared better than their older counterparts. This study suggests that open fractures in children younger than 12 years of age require less aggressive surgical treatment, heal faster, are more resistant to infection, and have fewer complications than those in older children.
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Affiliation(s)
- R D Blasier
- University of Arkansas for Medical Sciences and Arkansas Children's Hospital, Little Rock, USA
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24
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Jones JT, Barnes CL, Lietzke SE, Weichenrieder O, Doudna JA, Kundrot CE. Preliminary X-ray diffraction studies of an RNA pseudoknot that inhibits HIV-1 reverse transcriptase. Acta Crystallogr D Biol Crystallogr 1996; 52:1018-20. [PMID: 15299613 DOI: 10.1107/s0907444996004234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Crystals of a 26-nucleotide pseudoknot RNA, PK26, have been grown. The RNA was produced using phosphoramidite chemistry and was purified by denaturing polyacrylamide electrophoresis. The crystallization was robust with respect to changes in the number of nucleotides and to the salt used as precipitant. The crystals belong to space group P4(1)22 or P4(3)22 with unit-cell dimensions a = b = 61.6, c = 98.9 A. The best crystals diffract X-rays to 2.9 A. Three different sequences incorporating a single 5-bromo-deoxyuridine or 5-bromo-uridine nucleotide were also crystallized. Two of these derivatives are being used to determine the structure by multiple isomorphous replacement.
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Affiliation(s)
- J T Jones
- Department of Chemistry and Biochemistry, University of Colorado, Boulder 80309-0215, USA
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Lietzke SE, Barnes CL, Berglund JA, Kundrot CE. The structure of an RNA dodecamer shows how tandem U-U base pairs increase the range of stable RNA structures and the diversity of recognition sites. Structure 1996; 4:917-30. [PMID: 8805576 DOI: 10.1016/s0969-2126(96)00099-8] [Citation(s) in RCA: 73] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
BACKGROUND Non-canonical base pairs are fundamental building blocks of RNA structures. They can adopt geometries quite different from those of canonical base pairs and are common in RNA molecules that do not transfer sequence information. Tandem U-U base pairs occur frequently, and can stabilize duplex formation despite the fact that a single U-U base pair is destabilizing. RESULTS We determined the crystal structure of the RNA dodecamer GGCGCUUGCGUC at 2.4 A resolution. The molecule forms a duplex containing tandem U-U base pairs, which introduce an overall bend of 11-12 degrees in the duplex resulting from conformational changes at each interface between the tandem U-U base pairs and a flanking duplex sequence. The formation of the U-U base pairs cause small changes in several backbone torsion angles; base stacking is preserved and two hydrogen bonds are formed per base pair, explaining the stability of the structure. CONCLUSIONS Tandem U-U base pairs can produce stable structures not accessible to normal A-form RNA, which may allow the formation of specific interfaces for RNA-RNA or RNA-protein recognition. These base-pairs show an unusual pattern of hydrogen-bond donors and acceptors in the major and minor grooves, which could also act as a recognition site.
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Affiliation(s)
- S E Lietzke
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309-0215, USA
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Abstract
Heyns compounds, 2-carboxymethylamino-2-deoxy-D-glucose (1), -mannose (2), and -galactose (3), were prepared by N-carboxymethylation of the corresponding hexosamines and 1 was also prepared via the reaction of D-fructose with glycine. Both 1 and 3 crystallize from aqueous solutions as zwitterions in the alpha-pyranose form and in the 4C1 conformation. Crystalline 1 is nearly isostructural to N-acetylglucosamine, forming stacks of molecules with infinite chains of homodromic hydrogen bonds along the stacks. For both 1 and 3, all hydroxyl, ammonium, and carboxyl groups are involved in intermolecular hydrogen-bonding, and an intramolecular hydrogen bond in 3 is formed via interaction of the ammonium and carboxyl groups. 1H and 13C NMR spectra (D2O solutions) indicate that all of the compounds are conformationally unstable, and that the major form present in D2O solution at 25 degrees C is the 4C1 alpha-pyranose form, with the 4C1 beta-pyranose form present in lesser amounts. In addition, for solutions of 2 and 3, considerable amounts of alpha- and beta-furanose forms are present and exist in conformations favorable for a cis-relationship between the carboxymethylammonium and anomeric hydroxyl groups.
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Affiliation(s)
- V V Mossine
- Department of Biochemistry, University of Missouri, Columbia 65211, USA
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Venkatesh M, Goswami N, Volkert WA, Schlemper EO, Ketring AR, Barnes CL, Jurisson S. An Rh-105 complex of tetrathiacyclohexadecane diol with potential for formulating bifunctional chelates. Nucl Med Biol 1996; 23:33-40. [PMID: 9004912 DOI: 10.1016/0969-8051(95)02012-8] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
1,5,9,13-Tetrathiacyclohexane-3,11-diol (16S4-diol), a sulfur crown ether analog, was studied as a potential chelating agent to complex no-carrier-added (NCA) grade 105Rh(III) in high yield at low ligand concentrations. trans-[RhCl2(16S4-diol)]chi (chi = Cl, PF6) was prepared using nonradioactive RhCl3.3H2O and characterized by UV-Vis, nuclear magnetic resonance (NMR) and X-ray crystallography. It was shown to have a +1 charge with the Rh(III) metal center coordinated to the four S atoms equatorially and two Cl atoms in trans axial positions. The 105Rh-16S4-diol complex prepared with NCA 105Rh(III)-chloride reagent was found to exhibit identical chromatographic properties as trans-[Rh(III)Cl2(16S4-diol)]+ (including silica and C-18 thin-layer chromatography [TLC] and electrophoresis). The preparation of 105Rh-16S4-diol complex formation optimized for conditions of pH, temperature, time, % ethanol and quantity of 16S4-diol resulted in yields > 90%. Very low quantities of 16S4-diol (3 nmol) complex NCA 105Rh(III) under relatively mild reaction conditions (heating at 64 degrees C for 90 min) in the presence of ethanol (10%), yielded the high specific activity 105Rh-16S4-diol complex as a single cationic species. The 105Rh-16S4-diol complex was shown to be stable for > or = 4 days in physiological buffers at room temperature and in human serum at 37 degrees C.
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Affiliation(s)
- M Venkatesh
- Isotope Division, B.A.R.C., Trombay, Bombay, India
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28
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Abstract
Progress in the synthesis, purification and crystallization of RNA has resulted in the determination of several X-ray crystal structures of RNA molecules over the past few years. Methods proven and under development will lead to future structure determinations and shed light on the structural basis for RNA's many functions.
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Affiliation(s)
- S E Lietzke
- Department of Chemistry and Biochemistry, University of Colorado Boulder 80309-0215, USA
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Abstract
Although bipolar hemiarthroplasty of the hip is a frequently performed procedure, little information is available about the frequency of postoperative dislocation and its treatment. For this study, 1,934 hips treated consecutively with primary bipolar hemiarthroplasty were reviewed. A postoperative dislocation developed in 29 patients (1.5%): during the first month after surgery in 24 patients and between 1 month and 5 years after surgery in five patients. Of the 29 dislocations, 25 were successfully reduced with with routine closed methods. Among these 25 hips, 13 (52%) subsequently redislocated, and 7 of these required operative treatment for the recurrent dislocation. Dislocation after primary bipolar hemiarthroplasty is infrequent, can usually be reduced by routine closed methods, but is associated with a high rate of recurrent dislocation.
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Affiliation(s)
- C L Barnes
- University of Arkansas, Little Rock, USA
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30
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Abstract
Beta-particle dosimetry of various radionuclides used in the treatment of rheumatoid arthritis was estimated using Monte Carlo radiation transport simulation coupled with experiments using reactor-produced radionuclides and radiachromic film dosimeters inserted into joint phantoms and the knees of cadavers. Results are presented as absorbed dose factors (cGy-cm2/MBq-s) versus depth in a mathematical model of the rheumatoid joint which includes regions of bone, articular cartilage, joint capsule, and tissue (synovium) found in all synovial joints. The factors can be used to estimate absorbed dose and dose rate distributions in treated joints. In particular, guidance is provided for those interested in (a) a given radionuclide's therapeutic range, (b) the amount of radioactivity to administer on a case-by-case basis, (c) the expected therapeutic dose to synovium, and (d) the radiation dose imparted to other, nontarget components in the joint, including bone and articular cartilage.
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Affiliation(s)
- L S Johnson
- Department of Nuclear Engineering, Massachusetts Institute of Technology, Cambridge 02139, USA
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31
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Abstract
The popliteus tendon can be a potential source of internal derangement after total knee arthroplasty. It can subluxate anteriorly and posteriorly over a retained lateral femoral condylar osteophyte or over the overhanging edge of the metallic posterior femoral condyle. Surgical release of the tendon from its femoral insertion relieves the problem.
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Affiliation(s)
- C L Barnes
- Department of Orthopedic Surgery, New England Baptist Hospital, Brigham and Women's Hospital, Boston, Massachusetts, USA
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Barnes CL, Given BA, Given CW. Parent caregivers: a comparison of employed and not employed daughters. Soc Work 1995; 40:375-381. [PMID: 7761924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
A major task for social workers is sorting out the kinds of assistance needed by families who care for an elderly parent. In particular, information is needed about the differential effects of employment on daughters who care for their elderly parent. This study describes parental caregiving among three groups: daughters who were employed, daughters who were never employed while caregivers, and daughters who ended their employment to continue caregiving. The effects of caregiving on these three groups, as well as the daughters' involvement with care tasks and use of formal and informal assistance, are examined.
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Affiliation(s)
- C L Barnes
- Michigan State University, East Lansing 48824, USA
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33
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Abstract
The reaction of D-glucose with aminoguanidine was examined at pH 7.0 and 37 degrees C (phosphate buffer). Under these conditions, the reaction requires ca. 42 days for 50% of the sugar to react, as measured by the disappearance of D-glucose, and at 60 degrees C all the aminoguanidine had reacted within 72 h. The initial product, a beta-D-glucopyranosyl aminoguanidine (1) was obtained in the crystalline state as the trifluoroacetate salt. Data collected on this compound suggests that, in solution, it is largely a glycosylamine in the beta pyranose form. Acetylation gave a crystalline heptaacetate (2), which, in solution (as evidenced by NMR spectroscopy) exists in two different conformational forms. The crystal structure of the heptaacetate also includes two conformers. Both crystallographically independent molecules are in the normal beta pyranose form, with the acetylated guanyl residue occupying different spatial positions relative to the ring.
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Affiliation(s)
- J Hirsch
- Department of Biochemistry, University of Missouri, Columbia 65211
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Mossine VV, Glinsky GV, Barnes CL, Feather MS. Crystal structure of an Amadori compound, N-(1-deoxy-beta-D-fructopyranos-1-yl)-glycine ("D-fructose-glycine"). Carbohydr Res 1995; 266:5-14. [PMID: 7697650 DOI: 10.1016/0008-6215(94)00256-f] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The first crystal structure data on an Amadori compound, N-(1-deoxy-beta-D-fructopyranos-1-yl)-glycine, are reported. The space group is P2(1) with Z = 2 and cell parameters a = 7.246(1), b = 10.009(1), c = 7.060(1) A, and beta = 101.085(6) degrees. The structure was solved by direct methods and refined to a final R of 2.9% and Rw of 3.8% for 1385 reflections to give esd's of 0.002 A in bond lengths and 0.2 degree in angles. The conformation of the carbohydrate is the normal 2C5 pyranose chair. Bond lengths and valence angles compare well with average values from a number of pyranose structures. The molecule of the Amadori compound exists in the zwitterion form and has the C-6-O-6-C-2-C-1-N-C-2'-C-1'-O-1' chain in a zig-zag conformation, that is (together with O-2') substantionally planar. All hydroxyl, carboxyl, and ring oxygen atoms, and the secondary ammonium group are involved in hydrogen bonding, which forms a three-dimensional network of two infinite chains that have an ammonium group as a common segment. The shortest intra- and inter-molecular hydrogen bonds involved donors of the pyranosyl moiety and acceptors of the amino acid portion, and vice versa.
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Affiliation(s)
- V V Mossine
- Laboratory and Environmental Testing, Inc., Columbia, MO 65201
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Berry DJ, Barnes CL, Scott RD, Cabanela ME, Poss R. Catastrophic failure of the polyethylene liner of uncemented acetabular components. J Bone Joint Surg Br 1994; 76:575-8. [PMID: 8027143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Ten cases are described of catastrophic failure of the polyethylene liner of three different designs of uncemented acetabular component. Failure occurred as a result of either 'wearthrough' to the metal backing, liner fracture or a combination of both, at a mean of 4.6 years after implantation (2 to 7.6). At revision there was metallosis in all hips and osteolysis of the femur or the pelvis in six. Catastrophic failure was seen only in cups with a minimum polyethylene thickness of less than 5 mm.
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Affiliation(s)
- D J Berry
- Department of Orthopedics, Mayo Clinic, Rochester, Minnesota 55905
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Berry DJ, Barnes CL, Scott RD, Cabanela ME, Poss R. Catastrophic failure of the polyethylene liner of uncemented acetabular components. ACTA ACUST UNITED AC 1994. [DOI: 10.1302/0301-620x.76b4.8027143] [Citation(s) in RCA: 85] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Ten cases are described of catastrophic failure of the polyethylene liner of three different designs of uncemented acetabular component. Failure occurred as a result of either 'wearthrough' to the metal backing, liner fracture or a combination of both, at a mean of 4.6 years after implantation (2 to 7.6). At revision there was metallosis in all hips and osteolysis of the femur or the pelvis in six. Catastrophic failure was seen only in cups with a minimum polyethylene thickness of less than 5 mm.
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Barnes CL, Shortkroff S, Wilson M, Sledge CB. Intra-articular radiation treatment of rheumatoid synovitis of the ankle with dysprosium-165 ferric hydroxide macroaggregates. Foot Ankle Int 1994; 15:306-10. [PMID: 8075761 DOI: 10.1177/107110079401500605] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Intra-articular radiation treatment using dysprosium-165 ferric hydroxide macroaggregate has been performed on eight patients with refractory synovitis of the ankle. Seventy-five percent (six patients) responded well to the treatment, and there were no complications from the injection. Although ankle synovectomy is not often indicated, those patients with rheumatoid synovitis without significant joint destruction respond favorably to radiation treatment.
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Affiliation(s)
- C L Barnes
- Department of Orthopedic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115
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Nokes SR, Barnes CL, Collins DN. Radiological case of the month. Ganglion cyst with suprascapular nerve entrapment. J Ark Med Soc 1993; 90:335-6. [PMID: 8307905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Fort DM, Barnes CL, Tempesta MS, Casper HH, Bekele E, Rottinghaus AA, Rottinghaus GE. Two new modified trichothecenes from Fusarium sporotrichioides. J Nat Prod 1993; 56:1890-1897. [PMID: 8289061 DOI: 10.1021/np50101a004] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Two new modified trichothecenes, 2-deoxy-11-epi-3 alpha-hydroxysambucoin [1] and 2-deoxy-11-epi-12-acetyl-3 alpha-hydroxysambucoin [2], were isolated from Fusarium sporotrichioides culture. This is the first report of modified trichothecenes where the two six-membered rings are cis-fused. Structures were elucidated using gc-ms, nmr, X-ray crystallography, and other spectroscopic techniques. Compounds 1 and 2 were screened for relative cytotoxicity in cultured baby hamster kidney (BHK-21) cells and found to be non-toxic.
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Affiliation(s)
- D M Fort
- Department of Chemistry, University of Missouri, Columbia 65211
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40
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Barnes CL, Fleming CA, Poinsett-Holmes K, Kennedy LD. Chronic fatigue syndrome: what are the facts? J Pract Nurs 1993; 43:24-34. [PMID: 8410720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
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Abstract
OBJECTIVE To introduce cetirizine, a nonsedating antihistamine, and discuss its mechanism of action, chemistry, clinical and comparative trials, and adverse effects. DATA SOURCES An English-language literature search of MEDLINE was conducted. STUDY SELECTION Human clinical trials were selected for evaluation. DATA SYNTHESIS Cetirizine, an investigational agent and a potent histamine1-antagonist is a piperazine derivative and carboxylated metabolite of hydroxyzine. As a second-generation, nonsedating antihistamine, cetirizine is associated with fewer adverse effects compared with first-generation antihistamines. It appears to be at least as effective as the other nonsedating antihistamines in the treatment of allergic rhinitis, chronic idiopathic urticaria, and pollen-induced asthma. The recommended adult dosage of this agent is 5 or 10 mg/d. CONCLUSIONS Clinical studies indicate that cetirizine may be more beneficial in some ways than other available agents. Two of these advantages are a rapid onset of action and a once-daily dosing regimen. Future postmarketing surveillance is warranted to further document these findings.
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Affiliation(s)
- C L Barnes
- Department of Pharmacy Practice, School of Pharmacy, Campbell University, Buies Creek, NC 27506
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42
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Boyd AD, Thornhill TS, Barnes CL. Fractures adjacent to humeral prostheses. J Bone Joint Surg Am 1992; 74:1498-504. [PMID: 1469009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
In a review of records and radiographs from 1974 through 1988, we identified seven patients who had a humeral fracture after either a total shoulder replacement or a shoulder hemiarthroplasty. All seven patients had complications after the fracture, and five fractures did not unite until an operation was done. All of the fractures that were treated operatively healed without sequelae. Four patients who were managed operatively had satisfactory relief of pain and one had fair relief. One patient who had a non-union refused further treatment for medical reasons. The one fracture that united without operative treatment healed with the tip of the prosthesis outside of the humeral shaft, but persistent pain led to a revision total shoulder replacement. The average time to union after the operation was approximately five months (range, four to seven months). There was a permanent decrease in the motion of the shoulder from preinjury levels in five of the six patients who had union of the fracture.
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Affiliation(s)
- A D Boyd
- Department of Orthopaedic Surgery, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115
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Affiliation(s)
- C L Barnes
- Department of Orthopedic Surgery, University of Arkansas for Medical Sciences, Little Rock 72205
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Collins DN, Barnes CL, McCowan TC, Nelson CL, Carver DK, McAndrew MP, Ferris EJ. Vena caval filter use in orthopaedic trauma patients with recognized preoperative venous thromboembolic disease. J Orthop Trauma 1992; 6:135-8. [PMID: 1602331 DOI: 10.1097/00005131-199206000-00001] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
This study comprises a series of 35 patients with pelvic or lower extremity fractures requiring surgery who also had a documented significant acute deep venous thrombosis (DVT). The authors treated these with low-dose Coumadin and 36 vena caval filters, which were used prophylactically prior to surgery. The patients received low-dose warfarin after placement of the vena caval filters and were maintained at 1.3-1.5 times the prothrombin control value for 6 weeks to 3 months. In this group of patients, there were no fatal pulmonary emboli and no clinically significant complications from filter placement. There were nine asymptomatic filter complications demonstrated radiographically in eight patients. Additionally, one patient with a tilted vena caval filter required placement of another filter. The combination of vena caval filters and low-dose warfarin appears to be a successful and relatively safe method of managing those patients who have acute DVT and require surgery for their pelvic or lower extremity fractures.
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Affiliation(s)
- D N Collins
- Department of Orthopaedic Surgery, University of Arkansas for Medical Sciences, Little Rock
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Abstract
The cortex of the upper bank of the superior temporal sulcus (STS) in the rhesus monkey contains a region that receives overlapping input from post-Rolandic sensory association areas and is considered multimodal in nature. We have used the fluorescence retrograde tracing technique in order to answer the question of whether multimodal areas of the STS project back to post-Rolandic sensory association areas. Additionally, we have attempted to answer the question of whether the projections from the multimodal areas directed to the parasensory association areas originate from common neurons via axon collaterals or from individual neurons. The results show that multimodal area TPO of the STS projects back to specific unimodal parasensory association areas of the parietal lobe (somatosensory), superior temporal gyrus (auditory), and posterior parahippocampal gyrus (visual). In addition, a substantial number of projections from area TPO are directed to distal parasensory association areas, area PG-Opt in the inferior parietal lobule, areas Ts1 and Ts2 in the rostral superior temporal gyrus, and areas TF and TL in the parahippocampal gyrus. These latter regions are themselves considered to be higher-order association areas. It was also noted that the majority of the projections to these higher-order association areas originate from the middle divisions of area TPO (TPO-2 and TPO-3). These neurons are organized in a significantly overlapping manner. Despite this overlap of the projection neurons, only an occasional double labeled neuron was observed in area TPO. Thus, our observations indicate that the multimodal region of the superior temporal sulcus has reciprocal connections with the unimodal parasensory association cortices subserving somatosensory, auditory and visual modalities, as well as with other post-Rolandic higher-order association areas. These connections from area TPO to post-Rolandic association areas may have a modulating influence on the sensory association input leading to multimodal areas in the superior temporal sulcus.
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Affiliation(s)
- C L Barnes
- Edith Nourse Rogers Memorial Veterans Hospital, Bedford, Massachusetts 01730
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Barnes CL, Blasier RD, Dodge BM. Intravenous regional anesthesia: a safe and cost-effective outpatient anesthetic for upper extremity fracture treatment in children. J Pediatr Orthop 1991; 11:717-20. [PMID: 1960193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
We reviewed our most recent 100 consecutive cases with respect to efficacy and safety of anesthesia in which Bier block anesthesia was used to reduce upper extremity fractures. Records were reviewed to document diagnosis, number of reduction attempts, efficacy of anesthesia, and incidence of complications and untoward effects. No adverse effects were noted from lidocaine injection or tourniquet release. The cost of Bier block anesthesia administered in the emergency room (ER) was significantly less than that of a general anesthetic in the operating room. We have found the Bier block to be a safe, reliable, and cost-effective anesthetic in treatment of children's upper extremity fractures in the ER.
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Affiliation(s)
- C L Barnes
- Department of Orthopaedic Surgery, University of Arkansas for Medical Sciences, Little Rock 72205
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Collins DN, Barnes CL, FitzRandolph RL. Cervical spine instability in rheumatoid patients having total hip or knee arthroplasty. Clin Orthop Relat Res 1991:127-35. [PMID: 1934722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The records and roentgenographs of 113 rheumatoid patients treated by total hip or knee arthroplasty were analyzed retrospectively. The cervical spine roentgenographs were evaluated for significant atlantoaxial subluxation, atlantoaxial impaction, and subaxial subluxation. One or more of these findings were present in 69 (61%) of the patients. Thirty-five of the 69 (50%) with roentgenographically documented cervical spine instability had no signs or symptoms of instability at the time of admission for joint replacement. This high incidence of cervical spine instability in a select population of rheumatoid patients emphasizes the importance of preoperative evaluation of the cervical spine including flexion and extension lateral roentgenographs.
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Affiliation(s)
- D N Collins
- Department of Orthopaedic Surgery, University of Arkansas for Medical Sciences, Little Rock 72205
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Barnes CL, Nelson CL, Nix ML, McCowan TC, Lavender RC, Barnes RW. Duplex scanning versus venography as a screening examination in total hip arthroplasty patients. Clin Orthop Relat Res 1991:180-9. [PMID: 1914293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Combined B-mode/Doppler (duplex) scanning and venography were compared in routine perioperative screening for proximal deep vein thrombosis (DVT) in 158 total hip arthroplasty (THA) patients. Preoperative scans were performed in the first 60 patients; the low preoperative prevalence of 2% for proximal DVT was thought not to warrant routine preoperative scanning. Postoperatively, duplex scanning had a sensitivity of 79%, a specificity of 98%, and an accuracy of 97% when venography was considered as the gold standard. The postoperative incidence of proximal DVT was 12% in this group of THA patients treated with mechanical and pharmacologic prophylaxis. Including calf vein thrombosis, 30% had DVT postoperatively. This study demonstrates the efficacy of duplex scanning for diagnosing proximal DVT and describes an effective noninvasive method of screening THA patients for the presence of proximal DVT.
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Affiliation(s)
- C L Barnes
- Department of Orthopaedic Surgery, University of Arkansas for Medical Sciences, Little Rock 72205
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Barnes CL, Nelson CL, McCowan TC. Preoperative venography. A risk factor for postoperative deep venous thrombosis in hip arthroplasty patients? Orthop Rev 1991; 20:763-6. [PMID: 1945512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The incidence of postoperative deep venous thrombosis was compared between patients who had or had not received a preoperative screening venogram. No statistically significant difference in the deep venous thrombosis rate was noted postoperatively. Thirty percent of patients who received a preoperative venogram developed postoperative deep venous thrombosis, and 28% of those who did not have a preoperative venogram developed postoperative deep venous thrombosis. These results suggest that an orthopaedic surgeon may order a preoperative venogram for a patient at potential high risk of thromboembolic complications without predisposing the patient to an increased risk of postoperative deep venous thrombosis.
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Affiliation(s)
- C L Barnes
- Department of Orthopaedics, University of Arkansas for Medical Sciences, Little Rock
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