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For: Larsson A. AliView: a fast and lightweight alignment viewer and editor for large datasets. ACTA ACUST UNITED AC 2014;30:3276-8. [PMID: 25095880 PMCID: PMC4221126 DOI: 10.1093/bioinformatics/btu531] [Citation(s) in RCA: 1952] [Impact Index Per Article: 177.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Number Cited by Other Article(s)
101
Zhang JY, Hyde KD, Ma J, Wu N, Al-Otibi F, Zhang LJ, Lu YZ. Morpho-phylogenetic evidence reveals Pseudolomaanthathailandica gen. et sp. nov. and Submultiguttulisporamultiseptata gen. et sp. nov. in Chaetosphaeriaceae. MycoKeys 2025;113:123-146. [PMID: 39925748 PMCID: PMC11806344 DOI: 10.3897/mycokeys.113.142643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2024] [Accepted: 12/29/2024] [Indexed: 02/11/2025]  Open
102
Gnimadi TAC, Kadio KJJO, Mathew MJ, Diallo H, Soumah AK, Keita AK, Hounmenou CG, Fernandez-Nuñez N, Vidal N, Guichet E, Ayouba A, Delaporte E, Peeters M, Touré A, Keita AK. Genetic Diversity and Spatiotemporal Distribution of SARS-CoV-2 Variants in Guinea: A Meta-Analysis of Sequence Data (2020-2023). Viruses 2025;17:204. [PMID: 40006959 PMCID: PMC11860642 DOI: 10.3390/v17020204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2024] [Revised: 01/21/2025] [Accepted: 01/22/2025] [Indexed: 02/27/2025]  Open
103
Zhang JY, Hyde KD, Zhang LJ, Bai S, Bao DF, Al-Otibi F, Lu YZ. Two novel hyphomycetes associated with ferns from China. MycoKeys 2025;113:101-121. [PMID: 39925749 PMCID: PMC11806345 DOI: 10.3897/mycokeys.113.137678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2024] [Accepted: 12/07/2024] [Indexed: 02/11/2025]  Open
104
Yang X, Zhu Y, Duan S, Wu X, Zhao C. Morphology and multigene phylogeny revealed four new species of Geastrum (Geastrales, Basidiomycota) from China. MycoKeys 2025;113:73-100. [PMID: 39911476 PMCID: PMC11795189 DOI: 10.3897/mycokeys.113.139672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 01/02/2025] [Indexed: 02/07/2025]  Open
105
Gustani-Buss EC, Salehi-Vaziri M, Lemey P, Thijssen M, Fereydouni Z, Ahmadi Z, Ranst MV, Maes P, Pourkarim MR, Maleki A. Dispersal dynamics and introduction patterns of SARS-CoV-2 lineages in Iran. Virus Evol 2025;11:veaf004. [PMID: 39926479 PMCID: PMC11803630 DOI: 10.1093/ve/veaf004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 12/19/2024] [Accepted: 01/27/2025] [Indexed: 02/11/2025]  Open
106
Chittavichai T, Sathitnaitham S, Utthiya S, Prompichai W, Prommarit K, Vuttipongchaikij S, Wonnapinij P. Limitations of 18S rDNA Sequence in Species-Level Classification of Dictyostelids. Microorganisms 2025;13:275. [PMID: 40005642 PMCID: PMC11857562 DOI: 10.3390/microorganisms13020275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Revised: 01/21/2025] [Accepted: 01/22/2025] [Indexed: 02/27/2025]  Open
107
Giovanetti M, Micheli V, Mancon A, Mileto D, Rizzo A. Phylogenetic Analysis of Chandipura virus: Insights from a Preliminary Genomic Study. Int J Mol Sci 2025;26:1021. [PMID: 39940789 PMCID: PMC11817177 DOI: 10.3390/ijms26031021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2024] [Revised: 01/22/2025] [Accepted: 01/24/2025] [Indexed: 02/16/2025]  Open
108
Petzold A, Norden V, Gonwouo NL, Segniagbeto GH, Ohler A, Rödel MO. Phylogenetic relationships within western African Torrent Toads (Anura: Bufonidae: Werneria) with focus on the taxonomic status of Werneria preussi and Atelopus africanus. Zootaxa 2025;5575:351-373. [PMID: 40173864 DOI: 10.11646/zootaxa.5575.3.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2025] [Indexed: 04/04/2025]
109
Zhang X, Tibpromma S, Karunarathna SC, Du TY, Han LS, Elgorban AM, Kumla J, Senwanna C, Dai DQ, Suwannarach N, Wang HH. Additions to the saprobic fungi (Ascomycota) associated with macadamia trees from the Greater Mekong Subregion. MycoKeys 2025;113:1-29. [PMID: 39897715 PMCID: PMC11786193 DOI: 10.3897/mycokeys.113.140031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Accepted: 12/10/2024] [Indexed: 02/04/2025]  Open
110
Han SM, Kubo Y, Robert A, Baguelin M, Ariyoshi K. Impact of Viral Co-Detection on the Within-Host Viral Diversity of Influenza Patients. Viruses 2025;17:152. [PMID: 40006908 PMCID: PMC11861327 DOI: 10.3390/v17020152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2024] [Revised: 01/16/2025] [Accepted: 01/21/2025] [Indexed: 02/27/2025]  Open
111
Almeida MV, Blumer M, Yuan CU, Sierra P, Price JL, Quah FX, Friman A, Dallaire A, Vernaz G, Putman ALK, Smith AM, Joyce DA, Butter F, Haase AD, Durbin R, Santos ME, Miska EA. Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes. Genome Biol 2025;26:14. [PMID: 39844208 PMCID: PMC11753138 DOI: 10.1186/s13059-025-03475-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 01/06/2025] [Indexed: 01/24/2025]  Open
112
Bakamutumaho B, Juma J, Clancey E, Nyakarahuka L, Situma S, Odinoh R, Dawa J, Nasimiyu C, Eskew EA, Balinandi S, Mulei S, Kayiwa J, Klena JD, Shoemaker TR, Whitmer SLM, Montgomery JM, Schieffelin J, Lutwama J, Muruta A, Bosa HK, Nuismer SL, Oyola SO, Breiman RF, Njenga MK. Atypical hyperendemicity of Rift Valley fever in Southwestern Uganda associated with the rapidly evolving lineage C viruses. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2025:2025.01.14.25320317. [PMID: 39867400 PMCID: PMC11759597 DOI: 10.1101/2025.01.14.25320317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2025]
113
Horsman S, Zaugg J, Meler E, Mikkelsen D, Soares Magalhães RJ, Gibson JS. Molecular Epidemiological Characteristics of Staphylococcus pseudintermedius, Staphylococcus coagulans, and Coagulase-Negative Staphylococci Cultured from Clinical Canine Skin and Ear Samples in Queensland. Antibiotics (Basel) 2025;14:80. [PMID: 39858366 PMCID: PMC11761246 DOI: 10.3390/antibiotics14010080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2024] [Revised: 01/08/2025] [Accepted: 01/10/2025] [Indexed: 01/27/2025]  Open
114
Magalhães TBS, Viana ADO, Semedo TBF, Saldanha JS, dos Reis NA, Pereira NDA, de Barros RVP, Miranda HR, Almeida GC, Ozaki DYSR, Caleiro GS, Fenner GO, Vizu FP, Kraiser T, Carvalho TP, Thomazelli LM, Dorlass EG, Arns CW, Ferreira HL, Hingst-Zaher E, Rossi RV, Garbino GST, Durigon EL, de Araujo J, de Aguiar DM. First Detection of Alphacoronavirus in Bats from the World's Largest Wetland, the Pantanal, Brazil. Pathogens 2025;14:58. [PMID: 39861019 PMCID: PMC11768564 DOI: 10.3390/pathogens14010058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Revised: 01/05/2025] [Accepted: 01/07/2025] [Indexed: 01/27/2025]  Open
115
Gao Y, Zhang Z, Ji M, Ze S, Wang H, Yang B, Hu L, Zhao N. Identification and Pathogenicity of Fusarium Species from Herbaceous Plants on Grassland in Qiaojia County, China. Microorganisms 2025;13:113. [PMID: 39858884 PMCID: PMC11767762 DOI: 10.3390/microorganisms13010113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 01/05/2025] [Accepted: 01/07/2025] [Indexed: 01/27/2025]  Open
116
Markowitz LM, Nearman A, Zhao Z, Boncristiani D, Butenko A, de Pablos LM, Marin A, Xu G, Machado CA, Schwarz RS, Palmer-Young EC, Evans JD. Somy evolution in the honey bee infecting trypanosomatid parasite Lotmaria passim. G3 (BETHESDA, MD.) 2025;15:jkae258. [PMID: 39501754 PMCID: PMC11708234 DOI: 10.1093/g3journal/jkae258] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2024] [Accepted: 10/22/2024] [Indexed: 01/11/2025]
117
Dong J, Deng Q, Chen M, Chen D, Zhou C, Zhao C. Molecular phylogeny and morphology reveal four new wood-inhabiting fungi of Asterostroma and Radulomyces (Basidiomycota) from Southwestern China. MycoKeys 2025;112:35-58. [PMID: 39823091 PMCID: PMC11736305 DOI: 10.3897/mycokeys.112.137098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Accepted: 12/03/2024] [Indexed: 01/19/2025]  Open
118
Willemsen A, Manzano-Marín A, Horn M. Novel High-Quality Amoeba Genomes Reveal Widespread Codon Usage Mismatch Between Giant Viruses and Their Hosts. Genome Biol Evol 2025;17:evae271. [PMID: 39760805 PMCID: PMC11702301 DOI: 10.1093/gbe/evae271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/08/2024] [Indexed: 01/07/2025]  Open
119
Torruella G, Galindo LJ, Moreira D, López-García P. Phylogenomics of neglected flagellated protists supports a revised eukaryotic tree of life. Curr Biol 2025;35:198-207.e4. [PMID: 39642877 DOI: 10.1016/j.cub.2024.10.075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 08/28/2024] [Accepted: 10/29/2024] [Indexed: 12/09/2024]
120
Arakal BS, Rowlands RS, Maddocks SE, Whitworth DE, James PE, Livingstone PG. Myxobacteria from soil can substantially reduce the bacterial load in a wound infection model. J Appl Microbiol 2025;136:lxae315. [PMID: 39730144 DOI: 10.1093/jambio/lxae315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 11/20/2024] [Accepted: 12/26/2024] [Indexed: 12/29/2024]
121
de Sousa LLF, Guilardi MD, Martins JO, Alves BSS, Tibo LHS, da Silva-Antunes P, Cabral-Miranda G, Caldeira DB, Brandão PE, Campos FS, Janini LMR, Durães-Carvalho R. Phylogenetic inferences reveal multiple intra- and interhost genetic diversity among bat rabies viruses circulating in northeastern Brazil. ONE HEALTH OUTLOOK 2025;7:1. [PMID: 39757183 DOI: 10.1186/s42522-024-00124-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 11/18/2024] [Indexed: 01/07/2025]
122
Sánchez-Serna G, Badia-Ramentol J, Bujosa P, Ferrández-Roldán A, Torres-Águila NP, Fabregà-Torrus M, Wibisana JN, Mansfield MJ, Plessy C, Luscombe NM, Albalat R, Cañestro C. Less, but More: New Insights From Appendicularians on Chordate Fgf Evolution and the Divergence of Tunicate Lifestyles. Mol Biol Evol 2025;42:msae260. [PMID: 39686543 PMCID: PMC11733497 DOI: 10.1093/molbev/msae260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Revised: 11/17/2024] [Accepted: 12/02/2024] [Indexed: 12/18/2024]  Open
123
Fajardo SN, Bourret TB, Frankel SJ, Rizzo DM. Phytophthora Species and Their Associations with Chaparral and Oak Woodland Vegetation in Southern California. J Fungi (Basel) 2025;11:33. [PMID: 39852452 PMCID: PMC11766400 DOI: 10.3390/jof11010033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2024] [Revised: 12/28/2024] [Accepted: 01/02/2025] [Indexed: 01/26/2025]  Open
124
Frankenberg SR, Lucas S, Feigin CY, Doronina L, Steffen R, Hartley G, Grady P, Menzies BR, De Paoli-Iseppi R, Donnellan S, Klein M, Newton A, Black JR, Clark M, Cooper S, O'Neill R, Clark N, Schmitz J, Pask AJ. Unearthing the secrets of Australia's most enigmatic and cryptic mammal, the marsupial mole. SCIENCE ADVANCES 2025;11:eado4140. [PMID: 39742480 DOI: 10.1126/sciadv.ado4140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Accepted: 11/25/2024] [Indexed: 01/03/2025]
125
Hess OCJ, van der Deure T, Bolander M, Leal Dutra CA, Shik JZ. The evolution of thermal performance curves in fungi farmed by attine ant mutualists in above-ground or below-ground microclimates. J Evol Biol 2025;38:83-93. [PMID: 39447058 DOI: 10.1093/jeb/voae135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 09/13/2024] [Accepted: 10/22/2024] [Indexed: 10/26/2024]
126
Acford-Palmer H, Andrade AO, Phelan JE, Santana RA, Lopes SCP, Medeiros JF, Clark TG, Araujo MS, Campino S. Application of a targeted amplicon sequencing panel to screen for insecticide resistance mutations in Anopheles darlingi populations from Brazil. Sci Rep 2025;15:731. [PMID: 39753672 PMCID: PMC11698964 DOI: 10.1038/s41598-024-84432-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 12/23/2024] [Indexed: 01/06/2025]  Open
127
Patil S, Siji A, Mallur D, Kruthika BS, Gheewalla N, Karve S, Kavathekar M, Tarai B, Naik M, Hegde V, Rangineni J, Gupta V, Chandru V, Pradeep BE, Arora R. PathCrisp: an innovative molecular diagnostic tool for early detection of NDM-resistant infections. Sci Rep 2025;15:490. [PMID: 39747369 PMCID: PMC11696219 DOI: 10.1038/s41598-024-84832-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Accepted: 12/27/2024] [Indexed: 01/04/2025]  Open
128
Liao IT, Sears KE, Hileman LC, Nikolov LA. Different orthology inference algorithms generate similar predicted orthogroups among Brassicaceae species. APPLICATIONS IN PLANT SCIENCES 2025;13:e11627. [PMID: 39906489 PMCID: PMC11788906 DOI: 10.1002/aps3.11627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 08/25/2024] [Accepted: 09/07/2024] [Indexed: 02/06/2025]
129
Yıldırım Y, Bilge Dağalp S, Bozkurt G, Doğan F, Küçük A. Molecular Detection and Phylogenetic Analysis of Orf Virus From Dermatological Lesions in the Teats of Goats. Vet Med Sci 2025;11:e70139. [PMID: 39792125 PMCID: PMC11720726 DOI: 10.1002/vms3.70139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 10/30/2024] [Accepted: 11/11/2024] [Indexed: 01/12/2025]  Open
130
Palka MV, Manglicmot RC, Lax G, Wakeman KC, Leander BS. Ultrastructure of Olkasia polycarbonata (Euglenozoa, Euglenida) demonstrates cytoskeletal innovations associated with the feeding and flagellar apparatuses. J Eukaryot Microbiol 2025;72:e13074. [PMID: 39868631 PMCID: PMC11771642 DOI: 10.1111/jeu.13074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Revised: 11/27/2024] [Accepted: 12/16/2024] [Indexed: 01/28/2025]
131
Sunvittayakul P, Wonnapinij P, Wannitikul P, Phanthanong P, Changwitchukarn K, Suttangkakul A, Utthiya S, Phraemuang A, Kongsil P, Prommarit K, Ceballos H, Gomez LD, Kittipadakul P, Vuttipongchaikij S. Genome-wide association studies unveils the genetic basis of cell wall composition and saccharification of cassava pulp. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025;218:109312. [PMID: 39579720 DOI: 10.1016/j.plaphy.2024.109312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 10/27/2024] [Accepted: 11/18/2024] [Indexed: 11/25/2024]
132
Endsley CE, Kuhl MJ, Townsley TD, Durston KK, Soda M, Wallace TL, Deweese J. Using PSICalc to Identify Protein Sequence Interdependencies. Methods Mol Biol 2025;2928:223-232. [PMID: 40372649 DOI: 10.1007/978-1-0716-4550-5_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2025]
133
Keogh SM, Johnson NA, Smith CH, Sietman BE, Garner JT, Randklev CR, Simons AM. Secondary contact erodes Pleistocene diversification in a wide-ranging freshwater mussel (Quadrula). Mol Ecol 2025;34:e17572. [PMID: 39543938 DOI: 10.1111/mec.17572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2024] [Revised: 10/08/2024] [Accepted: 10/16/2024] [Indexed: 11/17/2024]
134
Hiltunen Thorén M, Stanojković A, Ryberg M, Johannesson H. Evolution of a bipolar sexual compatibility system in Marasmius. Mycologia 2025;117:19-33. [PMID: 39661443 DOI: 10.1080/00275514.2024.2425583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Accepted: 11/01/2024] [Indexed: 12/13/2024]
135
Crespo-Bellido A, Martin DP, Duffy S. Recombination Analysis of Geminiviruses Using Recombination Detection Program (RDP). Methods Mol Biol 2025;2912:125-143. [PMID: 40064777 DOI: 10.1007/978-1-0716-4454-6_11] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2025]
136
Naskar A, Chattopadhyay P, Dutta AK, Acharya K. Taxonomy and Biopharmaceutical Properties of a Newly Discovered Variety of Lentinus squarrosulus (Agaricomycetes) from West Bengal, India. Int J Med Mushrooms 2025;27:1-16. [PMID: 40094336 DOI: 10.1615/intjmedmushrooms.2025058024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
137
Jiang Q, Kang Z, Wang X, Zhao C. Molecular phylogeny and morphology reveal three new plant pathogenic fungi species (Septobasidiales, Basidiomycota) from China. MycoKeys 2024;111:229-248. [PMID: 39777379 PMCID: PMC11704740 DOI: 10.3897/mycokeys.111.125933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 11/28/2024] [Indexed: 01/11/2025]  Open
138
Resende PC, Junqueira DM, Tochetto C, Ogrzewalska M, Motta FC, Lopes J, Appolinario L, Macedo L, Caetano B, Matos A, Silva T, Pereira EC, Lima LF, Riediger I, Debur MDC, Becker GN, Andrade A, Nasr AMLF, Piler RA, Dalla Vecchia AC, Almeida W, Brown D, Schaefer R, Siqueira MM. Zoonotic transmission of novel Influenza A variant viruses detected in Brazil during 2020 to 2023. Nat Commun 2024;15:10748. [PMID: 39737909 PMCID: PMC11685428 DOI: 10.1038/s41467-024-53815-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Accepted: 10/22/2024] [Indexed: 01/01/2025]  Open
139
Wu XX, Wang Y, Chen YY, Wang Q. Microtoenawawushanensis (Lamiaceae, Lamioideae): A new species from Sichuan, China. PHYTOKEYS 2024;250:223-236. [PMID: 39777402 PMCID: PMC11704741 DOI: 10.3897/phytokeys.250.139362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Accepted: 11/29/2024] [Indexed: 01/11/2025]
140
Nyathi S, Rezende IM, Walter KS, Thongsripong P, Mutuku F, Ndenga B, Mbakaya JO, Agola G, Vu DM, Bennett S, Mordecai EA, Andrews JR, LaBeaud AD. Geographic origin and evolution of dengue virus serotypes 1 and 3 circulating in Africa. Virus Evol 2024;11:veae116. [PMID: 39839680 PMCID: PMC11749777 DOI: 10.1093/ve/veae116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 12/06/2024] [Accepted: 12/26/2024] [Indexed: 01/23/2025]  Open
141
Davies-Bolorunduro OF, Jaemsai B, Ruangchai W, Noppanamas T, Boonbangyang M, Bodharamik T, Sawaengdee W, Mahasirimongkol S, Palittapongarnpim P. Analysis of complete genomes of Mycobacterium tuberculosis sublineage 2.1 (Proto-Beijing) revealed the presence of three pe_pgrs3-pe_pgrs4-like genes. Sci Rep 2024;14:30702. [PMID: 39730410 DOI: 10.1038/s41598-024-79351-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Accepted: 11/08/2024] [Indexed: 12/29/2024]  Open
142
Pasquesi GIM, Allen H, Ivancevic A, Barbachano-Guerrero A, Joyner O, Guo K, Simpson DM, Gapin K, Horton I, Nguyen LL, Yang Q, Warren CJ, Florea LD, Bitler BG, Santiago ML, Sawyer SL, Chuong EB. Regulation of human interferon signaling by transposon exonization. Cell 2024;187:7621-7636.e19. [PMID: 39672162 PMCID: PMC11682929 DOI: 10.1016/j.cell.2024.11.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 02/21/2024] [Accepted: 11/12/2024] [Indexed: 12/15/2024]
143
Garcia LE, Sanchez-Puerta MV. Mitochondrial Splicing Efficiency Is Lower in Holoparasites Than in Free-Living Plants. PLANT & CELL PHYSIOLOGY 2024;65:2018-2029. [PMID: 39540883 DOI: 10.1093/pcp/pcae120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 09/18/2024] [Accepted: 10/09/2024] [Indexed: 11/16/2024]
144
Yang T, Tan C, Zhao L, Hu Z, Su C, Li F, Ma Y, Zhang W, Hao X, Zou W, Kang J, He Q. The Complete Mitochondrial Genome of the Luciocyprinus langsoni (Cypriniformes: Cyprinidae): Characterization, Phylogeny, and Genetic Diversity Analysis. Genes (Basel) 2024;15:1621. [PMID: 39766888 PMCID: PMC11675621 DOI: 10.3390/genes15121621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2024] [Revised: 12/09/2024] [Accepted: 12/17/2024] [Indexed: 01/11/2025]  Open
145
Tran TH, F Escapa I, Roberts AQ, Gao W, Obawemimo AC, Segre JA, Kong HH, Conlan S, Kelly MS, Lemon KP. Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses. mSystems 2024;9:e0113224. [PMID: 39508593 DOI: 10.1128/msystems.01132-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Accepted: 10/03/2024] [Indexed: 11/15/2024]  Open
146
Mikhari RL, Meiring S, de Gouveia L, Chan WY, Jolley KA, Van Tyne D, Harrison LH, Marjuki H, Ismail A, Quan V, Cohen C, Walaza S, von Gottberg A, du Plessis M. Genomic Diversity and Antimicrobial Susceptibility of Invasive Neisseria meningitidis in South Africa, 2016-2021. J Infect Dis 2024;230:e1311-e1321. [PMID: 38687883 PMCID: PMC11646611 DOI: 10.1093/infdis/jiae225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 04/22/2024] [Accepted: 04/29/2024] [Indexed: 05/02/2024]  Open
147
Souza PJD, Fernandes J, Coelho TA, Cosentino M, D'arc M, Alves PDG, Guterres A, Vilar EM, Lemos ERSD, Cordeiro-Estrela P, Santos AFA, Oliveira RCD. A newly bat-borne hantavirus detected in Seba's short-tailed bats (Carollia perspicillata) in the Brazilian Atlantic Rainforest. Mem Inst Oswaldo Cruz 2024;119:e240132. [PMID: 39699489 DOI: 10.1590/0074-02760240132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 10/14/2024] [Indexed: 12/20/2024]  Open
148
Wu N, Du HZ, Chethana KWT, Khongphinitbunjong K, Maharachchikumbura SSN, Hyde KD, Liu JK. Additions to Dictyosporiaceae: Neoxylochrysis typhicola comb. et gen. nov., Two New Species and Four New Host Records from Medicinal Plants in Southwestern China. J Fungi (Basel) 2024;10:872. [PMID: 39728368 DOI: 10.3390/jof10120872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2024] [Revised: 12/08/2024] [Accepted: 12/13/2024] [Indexed: 12/28/2024]  Open
149
Ma J, Hyde KD, Tibpromma S, Gomdola D, Liu NG, Norphanphoun C, Bao DF, Boonmee S, Xiao XJ, Zhang LJ, Luo ZL, Zhao Q, Suwannarach N, Karunarathna SC, Liu JK, Lu YZ. Taxonomy and systematics of lignicolous helicosporous hyphomycetes. FUNGAL DIVERS 2024;129:365-653. [DOI: 10.1007/s13225-024-00544-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 09/20/2024] [Indexed: 01/05/2025]
150
Drewinski MP, Corrêa-Santos MP, Lima VX, Lima FT, Palacio M, Borges MEA, Trierveiler-Pereira L, Magnago AC, Furtado ANM, Lenz AR, Silva-Filho AGS, Nascimento CC, Alvarenga RLM, Gibertoni TB, Oliveira JJS, Baltazar JM, Neves MA, Vargas-Isla R, Ishikawa NK, Menolli N. Over 400 food resources from Brazil: evidence-based records of wild edible mushrooms. IMA Fungus 2024;15:40. [PMID: 39673069 PMCID: PMC11639120 DOI: 10.1186/s43008-024-00171-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Accepted: 11/21/2024] [Indexed: 12/15/2024]  Open
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