The potential for reducing aflatoxin B1 contamination of stored peanuts by soil disinfection

Aflatoxins from the fungus Aspergillus flavus (A. flavus) that contaminate stored peanuts is a major hazard to human health worldwide. Reducing A. flavus in soil can decrease the risk of aflatoxins in stored peanuts. In this experiment, we determined whether peanuts grown on soil fumigated with dazomet (DZ), metham sodium (MS), allyl isothiocyanate (AITC), chloropicrin (PIC) or dimethyl disulfide (DMDS) would reduce of the quantity of A. flavus and its toxin's presence. The results of bioassays and field tests showed that PIC was the most effective fumigant for preventing and controlling A. flavus, followed by MS. PIC and MS applied to the soil for 14 d resulted in LD50 values against A. flavus of 3.558 and 4.893 mg kg-1, respectively, leading to almost 100% and 98.82% effectiveness of A. flavus, respectively. Peanuts harvested from fumigated soil and then stored for 60 d resulted in undetectable levels of aflatoxin B1 (AFB1) compared to unfumigated soil that contained 0.64 ug kg-1 of AFB1, which suggested that soil fumigation can reduce the probability of aflatoxin contamination during peanut storage and showed the potential to increase the safety of peanuts consumed by humans. Further research is planned to determine the practical value of our research in commercial practice.

Fumigation alters the manganese-oxidizing microbial communities to enhance soil manganese availability and increase tomato yield

Manganese is one of the essential trace elements for plants to maintain normal life activities. Soil fumigation, while effectively controlling soil-borne diseases, can also improve the cycling of soil nutrient elements. MiSeq amplicon sequencing is used to determine the composition of soil microbial communities, and structural equation modeling and the random forest algorithm are employed to conduct a correlation analysis between key manganese-oxidizing microorganisms and soil manganese availability. This experiment investigated the microbial mechanisms behind the observed increase in available manganese in soil after fumigation. The key findings revealed that Bacillus, GeoBacillus, GraciliBacillus, Chungangia, and Pseudoxanthomonas play crucial roles in influencing the variation in soil available manganese content. Fumigation was found to elevate the abundance of Bacillus. Moreover, laccase activity emerged as another significant factor impacting soil manganese availability, showing an indirect correlation with available manganese content and contributing to 58 % of the observed variation in available manganese content. In summary, alterations in the communities of manganese-oxidizing microorganisms following soil fumigation are pivotal for enhancing soil manganese availability.

Encapsulated allyl isothiocyanate improves soil distribution, efficacy against soil-borne pathogens and tomato yield

BACKGROUND

Crop quality, yield and farmer income are reduced by soil-borne diseases, nematodes and weeds, although these can be controlled by allyl isothiocyanate (AITC), a plant-derived soil fumigant. However, its efficacy against soil-borne pathogens varies, mainly because of its chemical instability and uneven distribution in the soil. Formulation modification is an effective way to optimize pesticide application. We encapsulated AITC in modified diatomite granules (GR) and measured the formulation's loading content and stability, environmental fate and efficacy against soil-borne pathogens, and its impact on the growth and yield of tomatoes.

RESULTS

We observed that an AITC loading content in the granules of 27.6% resulted in a degradation half-life of GR that was 1.94 times longer than 20% AITC emulsifiable concentrate in water (EW) and shorter than AITC technical (TC) grade. The stable and more even distribution of GR in soil resulted in relatively consistent and acceptable control of soil-borne pathogens. Soil containing AITC residues that remained 10-24 days after GR fumigation were not phytotoxic to cucumber seeds. GR significantly reduced soil-borne pest populations, and tomato growth and yield increased as AITC dosage increased. GR containing an AITC dose of 20 g m-2 effectively controlled pathogens in soil for about 7 months and improved tomato yield by 108%.

CONCLUSION

Our research demonstrates the benefits of soil fumigation with loaded AITC over other formulations for effective pest control, and improved tomato plant growth and fruit yield. Fumigant encapsulation appears to be a useful method to improve pest and disease control, environmental performance and fumigant commercial sustainability. © 2024 Society of Chemical Industry.

Systematic assessment of the antifungal mechanism of soil fumigant methyl isothiocyanate against Fusarium oxysporum

Fusarium oxysporum is an important phytopathogenic fungus, it can be controlled by the soil fumigant methyl isothiocyanate (MITC). However, the antimicrobial mechanism of MITC against F. oxysporum, especially at the transcriptional level, is still unclear. In this experiment, the antimicrobial mechanism of MITC against F. oxysporum was investigated. Our results indicated that when F. oxysporum was exposed to 6 mg/L MITC for 12 h, the inhibitory rate of MITC on F. oxysporum was 80%. Transmission electron microscopes showed that the cell wall and membrane of F. oxysporum had shrunk and folded, vacuoles increased, and mitochondria swelled and deformed. In addition, the enzyme activity of F. oxysporum treated with MITC showed a decrease of 32.50%, 8.28% and 74.04% in catalase, peroxidase and superoxide dismutase, respectively. Transcriptome sequencing of F. oxysporum was performed and the results showed that 1478 differentially expressed genes (DEGs) were produced in response to MITC exposure. GO and KEGG analysis showed that the DEGs identified were involved in substance and energy metabolism, signal transduction, transport and catalysis. MITC disrupted cell homeostasis by influencing the expression of some key genes involved in chitin synthase and detoxification enzymes production, but F. oxysporum also protected itself by up-regulating genes involved in energy synthesis (such as upregulating acnA, CS and LSC2 in TCA). qRT-PCR data validated the reliability of transcriptome data. Our research used biochemical and genetic techniques to identify molecular lesions in the mycelia of F. oxysporum exposed to MITC, and provide valuable insights into the toxic mechanism of pathogenic fungi mediated by MITC. These techniques are also likely to be useful for rapidly screening and identifying new, environmentally-friendly soil fumigants that are efficacious against fungal pathogens.

Soil amendments promoting nitrifying bacteria recovery faster than the denitrifying bacteria at post soil fumigation

Chloropicrin (CP) is a soil fumigant that not only reduces disease-causing pathogenic microbes but regrettably also those that benefit soil quality and crop health. However, we have few knowledge on rapidly restoring populations of beneficial microbes suppressed by CP fumigation. Here we used genetic sequencing technology to monitor changes in the recovery of soil bacteria in response to ammonium sulfate added to the soil following CP fumigation. The results showed that regardless of the N fertilizer addition rate, the accumulated NH4+-N in CP fumigated soil was rapidly consumed within 42 d. The rapid reduction in NH4+-N coincided with the observed recovery nitrogen-cycling microorganisms, especially the nitrification bacteria AOA and AOB that contributed to the formation of NH4+-N. Additionally, we further observed that the resilience index of nitrifying bacteria (AOB and AOA) was greater than the resilience index of denitrifying bacteria that contain the denitrification genes nirS, nirK and nosZ (0.12 to 0.55 vs. -0.27 to 0.073). These results revealed that N fertilizer stimulated the recovery of nitrifying bacteria more than denitrifying bacteria. Our research suggests that ammonium sulfate applied to CP fumigated soil could be used commercially to improve soil health as a result of an increase in beneficial microbes.

Transcriptome reveals the toxicity difference of dimethyl disulfide by contact and fumigation on Meloidogyne incognita through calcium channel-mediated oxidative phosphorylation

The prevention and control of root-knot nematode disease has been posing a severe challenge worldwide. Fumigant dimethyl disulfide (DMDS) has excellent biological activity against nematodes. However, DMDS displays significant differences in contact and fumigation toxicity on nematodes. The specific regulatory mechanisms of DMDS on nematodes were investigated by characterizing the ultrastructure of nematodes, examining the physiological and biochemical indicators, and conducting transcriptome high-throughput sequencing. As indicated by the results, DMDS fumigation exhibited the biological activity of against M. incognita 121 times higher than DMDS contact. DMDS contact destroyed nematode body wall cells. Besides, DMDS fumigation destroyed the structure of pseudocoelom. DMDS treatment expedited the oxygen consumption of nematode while inhibiting acetylcholinesterase activity. As indicated by the analysis of vital signaling pathways based on transcriptome, DMDS based on the contact mode penetrated directly into the nematode through the body wall and subsequently affected calcium channels in the body wall and muscle, disrupting their structure; it serves as an uncoupling agent to interfere with ATP synthase. Moreover, DMDS based on the fumigation mode entered the body through the respiratory pathway of olfactory perception-oxygen exchange and subsequently affected calcium channels in the nerve; eventually, DMDS acted on complex IV or complex I.

Comparison of drip-irrigated or injected allyl isothiocyanate against key soil-borne pathogens and weeds

BACKGROUND

Allyl isothiocyanate (AITC) is a soil biofumigant used for controlling soil-borne pests that reduce the growth, quality, and yield of food crops. Its effectiveness against pathogens depends largely on its distribution in the soil, which is influenced mainly by the soil water content and application method. The distributions of AITC when injected with different moisture content or drip-irrigated into soils were compared.

RESULTS

AITC injected at 50 g m-2 only diffused 10 cm deep in soil column with 5, 10 or 15% soil moisture content. The gas AITC peak concentration was 0.64 μg cm-3 at 5% moisture content. Diffusion was reduced when moisture content increased to more than 15%. The results of adsorption kinetics and release indicated that AITC's limited distribution was due to its low vapor pressure. AITC applied by drip irrigation at 7.5 g m-2 diffused 15 cm laterally and 30 cm deep where it reached concentrations of 0.022 μg cm-3 and 0.035 μg g-1 , respectively. Some soil-borne pathogens, nematodes and weed seeds closed to the point of AITC release were effectively controlled under drip irrigation, but efficacy decreased with increased distance. AITC applied by drip irrigation at 7.5 g m-2 and covered with PE film for 5 days provided a satisfactory efficacy against soil-borne pathogens and weeds without any phytotoxicity.

CONCLUSION

Our results indicated that AITC applied by drip irrigation was more effective than injection, which will guide applicators on methods to optimize the application of AITC for efficient control of key pests and weeds. © 2023 Society of Chemical Industry.

Effects of soil factors on dimethyl disulfide desorption and the risk of phytotoxicity to newly-planted seedlings

Dimethyl disulfide (DMDS) is a relatively new soil fumigant used in agro-industrial crop production to control soil-borne pests that damage crops and reduce yield. The emissions of DMDS after fumigation reduce soil concentrations thus reducing the risk of phytotoxicity to newly planted crops. However, the factors affecting the desorption of DMDS from soil are unclear. In our study, the desorption characteristics of DMDS from soil were measured in response to continuous ventilation. The degradation of DMDS in soil was examined by thermal incubation. The phytotoxic response of newly-planted cucumber (Cucumis sativus) seedlings to DMDS residues was measured by a sand culture experiment. The results showed DMDS desorption and degradation rates fit a first-order model; that 92% of the DMDS desorption occurred in the first hour after fumigant application; and that residue concentrations in the soil at the end of the ventilation period were unlikely to be phytotoxic to newly-planted cucumber seedlings. By the third day of ventilation, the average desorption rate (ADR) of DMDS in Wenshan soil was 4.0 and 3.6 times, respectively, faster than that in Shunyi and Suihua soils and the ADR of DMDS in soil decreased by 40.0% when the soil moisture content increased from 3% to 12% (wt/wt). Moreover, within one hour of ventilation, the ADR of DMDS in soil decreased by 20.1% when the soil bulk density increased from 1.1 to 1.3 g cm-3. The degradation of DMDS in soil, however, was mostly influenced by soil type and moisture content. A slow degradation rate resulted in a high initial desorption concentration of DMDS in soil. Our results indicated that DMDS desorption from soil in response to continuous ventilation was affected by the soil type, moisture content and bulk density. Rapid degradation of DMDS in soil will lower the risk of phytotoxic residues remaining in the soil and reduce emissions during the waiting period. Acceleration of emissions early in the waiting period by managing soil moisture content or increasing soil porosity may shorten the duration of emissions. Alternatively, soil extraction technology could be developed to recover and reduce fumigant emissions.

Long-term effects of chloropicrin fumigation on soil microbe recovery and growth promotion of Panax notoginseng

Introduction

Panax notoginseng is a precious Chinese medicinal material. Soil fumigation can control soil-borne disease and overcome the continuous cropping obstacles of P. notoginseng. However, chloropicrin (CP) fumigation can kill non-target soil microorganisms and reduce microbial diversity, but the long-time impacts of CP fumigation on soil microbial are less reported.

Methods

We studied the long-term effects of CP fumigation on soil microbes with high-throughput gene sequencing, and correlated the changes in the composition of microbial communities with environmental factors like soil physicochemical properties and soil enzyme activities. This study mainly focuses on the recovery characteristics of soil microbe after soil fumigation by evaluating the ecological restoration of P. notoginseng soil, its sustained control effect on plant diseases, and its promotion effect on crop growth by focusing on the CP fumigation treatment.

Results

The results showed that CP fumigation significantly increased soil available phosphorus (P) to 34.6 ~ 101.6 mg/kg and electrical conductivity (EC) by 18.7% ~ 34.1%, respectively. High-throughput gene sequencing showed that soil fumigation with CP altered the relative abundance of Trichoderma, Chaetomium, Proteobacteria, and Chloroflexi in the soil while inhibiting a lot of Fusarium and Phytophthora. The inhibition rate of Phytophthora spp. was still 75.0% in the third year after fumigation. Fumigation with CP enhanced P. notoginseng's survival rate and stimulated plant growth, ensuring P. notoginseng's healthy in the growth period. The impact of fumigation on microbial community assembly and changes in microbial ecological niches were characterized using normalized stochasticity ratio (NST) and Levins' niche breadth index. Stochasticity dominated bacterial community assembly, while the fungal community was initially dominated by stochasticity and later by determinism. Fumigation with CP reduced the ecological niches of both fungi and bacteria.

Conclusion

In summary, the decrease in microbial diversity and niche caused by CP fumigation could be recovered over time, and the control of soil pathogens by CP fumigation remained sustainable. Moreover, CP fumigation could overcome continuous cropping obstacles of P. notoginseng and promote the healthy growth of P. notoginseng.

Mechanisms by which chloropicrin fumigation promotes soil potassium conversion and absorption

Fumigation of soil using chloropicrin has been proven to significantly affect soil nutrient cycling, but the mechanism by which soil potassium conversion and plant uptake is promoted remains unclear. In this study, we conducted a fumigation experiment to investigate the effects of chloropicrin soil fumigation on the conversion of soil potassium post-fumigation (days 7-70), and its mechanisms, tomatos were planted in fumigated and non-fumigated soils to enable further comparisons. Results showed that the content of rapidly available potassium and available potassium decreased by 16-24% and 17-23% at day 28 respectively, when tomato was planted in chloropicrin-fumigated soils compared to the non-fumigated soils. The potassium content of tomato planted in fumigated soil was significantly higher than that planted in non-fumigated soil (30.3 vs. 21.9 mg g^-1 dry weight). Chloropicrin fumigation resulted in a significant change in the soil bacterial and fungal community structures, and trigged a long-term (at least 70-day) decrease in microbial diversity. Network analysis showed that chloropicrin soil fumigation changed microbial co-occurrence patterns by decreasing bacterial total links, nodes, and average degree, and increasing fungal total links, nodes, and average degree. Chloropicrin fumigation caused significant changes in the relative abundance of Bacillus species, which are involved in potassium dissolution. Structural equation model (SEM) suggested that fumigation with chloropicrin enhanced the contribution of soil potassium to tomato growth and reduced the contribution of bacterial communities. Together, the results of our study help in understanding the crop yield enhancement mechanism of soil fumigation.

Silica modified copper-based alginate/chitosan hybrid hydrogel to control soil fumigant release, reduce emission and enhance bioactivity

Soil fumigant has been extensively used for excellent efficacy on soil-borne diseases. However, rapid emission and insufficient effective duration typically limit its application. In this study, hybrid silica/polysaccharide hydrogel was proposed (SIL/Cu/DMDS) by emulsion-gelation method to encapsulate dimethyl disulfide (DMDS). The orthogonal study was used to optimize the preparation parameters for LC and EE of SIL/Cu/DMDS, which was 10.39 % and 71.05 %, respectively. Compared with silica, the time for 90 % of the total emissions was extended by 4.36 times. The hydrogel possessed a longer persistent duration and the degradation half-life of DMDS was 3.47 times greater than that of silica alone. Moreover, the electrostatic interaction between abundant groups of polysaccharide hydrogel bestowed DMDS with pH-triggered release behavior. Additionally, SIL/Cu/DMDS had excellent water holding and water retention capacity. The bioactivity of the hydrogel was 58.1 % higher than that of DMDS TC due to the strong synergistic effect between DMDS and the carriers (chitosan and Cu²⁺), and showed obvious biosafety to cucumber seeds. This study seeks to provide a potential approach to develop hybrid polysaccharide hydrogel to control soil fumigants release, reduce emission and enhance bioactivity in plant protection.

Evaluation of ethylicin as a potential soil fumigant in commercial tomato production in China

Recent increases in soil-borne plant disease have limited further expansion of some crops produced in protected agriculture. Soil fumigation effectively minimizes the impact of soil pathogens causing many diseases. We provide the first report of the efficacy of the Chinese fungicide ethylicin as a soil fumigant against the plant pathogens such as Fusarium spp. and Phytophthora spp., and against the plant parasitic nematode Meloidogyne spp. We also examined ethylicin's impact on the physicochemical properties of soil, the soil's bacterial and fungal taxonomic composition, the plant growth of tomatoes, the enzyme activity of soil and tomato yield. Ethylicin fumigation significantly decreased the abundance of Fusarium spp. and Phytophthora spp. by 67.7 %-84.0 % and 53.8 %-81.0 %, respectively. It reduced Meloidogyne spp. by 67.2 %-83.6 %. Ethylicin significantly increased the growth of tomato plants and tomato yield by 18.3 %-42.0 %. The soil's ammonium‑nitrogen concentration increased significantly in answer to ethylicin fumigation, while nitrate‑nitrogen concentration and the activity of soil urease decreased significantly. High-throughput gene sequencing had been used to show that ethylicin cut down the taxonomic soil bacteria diversity and bacterial abundance, but increased the soil fungi taxonomic diversity. Some genera of microorganisms increased, such as Firmicutes, Steroidobacter and Chytridiomycota, possibly due to changes in the physicochemical properties of soil that differentially favored their survival. We conclude that ethylicin is efficacious as a soil fumigant and it would be a useful addition to the limited number of soil fumigants currently available.

Effects of fertilizers and soil amendments on the degradation rate of allyl isothiocyanate in two typical soils of China

BACKGROUND

Allyl isothiocyanate (AITC) is a soil fumigant that protects plants against soil-borne pathogens, weeds and insects when present in the root-zone. However, the degradation of AITC under different fertilizers and soil amendments affects its emission and pest control efficacy. Degradation rates of AITC in soil amended with organic and inorganic fertilizers, zeolite and biochar were determined in the laboratory to improve its field applications.

RESULTS

The degradation half-lives of AITC were 24.4 and 35.4 h in Fangshan and Yongzhou soils, respectively, without any added fertilizer or soil amendment. Nitrogen fertilizer and organic fertilizer accelerated the degradation rate of AITC, while phosphorus fertilizer had the opposite effect. The degradation rate of AITC on adding unsterilized chicken manure was over 3.5 and 1.1 times higher than that of sterilization in Fangshan and Yongzhou soil. Inorganic and organic fertilizers affected the degradation of AITC by affecting soil microbial activity on the basis of CO₂ cumulative release. The degradation rate of AITC increased more than 0.4 times in response to zeolite, but this was independent of particle size. The AITC degradation rate increased 1.0-2.6 and 0.3-9.7 times in response to biochar made from corn stalk and pine wood, respectively. Cow manure biochar manufactured at different pyrolyzation temperatures had different effects on the degradation rate of AITC.

CONCLUSION

Soil type, fertilizers and soil amendments differentially affect the degradation rate of AITC by changing soil physicochemical characteristics, microorganisms, etc., which shows great potential in reducing AITC emissions and increasing pest control efficacy when AITC is applied commercially. © 2022 Society of Chemical Industry.

Metolachlor metal-organic framework nanoparticles for reducing leaching, ecotoxicity and improving bioactivity

BACKGROUND

The adverse effects of pesticides has led to a series of ecological, environmental and public health issues. Amide herbicides are an important agrochemical, yet many are prone to leach and pollute the environment, which limits their further application. In this study, metolachlor (METO) was selected as a model pesticide and a controlled released nanoparticle (NP) system was constructed employing a zeolitic imidazolate framework-8 hybrid inorganic-organic porous material (METO@ZIF-8).

RESULTS

The synthesis parameters of METO@ZIF-8 were optimized, and the loading content of METO@ZIF-8 was maximized by a central composite design of response surface test. The NPs were regular dodecahedron with uniform size (mostly 54.3 nm diameter). METO@ZIF-8 had high specific surface area and good dispersal in water. Moreover, it endowed the active ingredient with a pH-responsive release property. The nanocarrier effectively improved the adsorption capacity of METO in soil and reduce the leaching by 10.3-21.7%. Pot experiments suggested that the control effect of METO@ZIF-8 was 16.6 and 48.4% higher than that of METO emulsifiable concentrate (EC) and METO technical concentration (TC) at the recommended dose. Based on the excellent controlled release profiles, METO@ZIF-8 did not affect corn plant growth and significantly reduced the risk of phytotoxicity induced by METO. METO@ZIF-8 effectively reduced acute toxicity in zebrafish compared with METO EC.

CONCLUSION

This study explored the fabrication of a nanocarrier for improving the efficacy and promoting the environmental safety of leachable amide herbicides. © 2022 Society of Chemical Industry.

First report in China of Fusarium humuli as a causative agent of Chinese yam wilt

Wilt is one the most serious soil-born fungal diseases of Chinese yam (Dioscorea polystachya Turczaninow cv. Tiegun), affecting plant production in many growing regions in Jiangxi province, China. The average annual incidence of wilt is 45-80%. In 2020, affected plants with wilt symptoms including withered and dried leaves, vascular discoloration, and brown necrotic stem lesions at the soil line or in the crown of the plant (Figure 1A-D) were collected from the Ruichang, Yongfeng and Taihe production areas (four fields per location) in Jiangxi province. A total of fifteen isolates were recovered from the infected stem tissues of Chinese yam and purified by single spore cultures on PDA growth medium. The fifteen isolates were similar in morphology so isolate JXRC11 was selected to be representative of the group. Pure fungal colonies of JXRC11were found to be round, white, with margin entire (Figure 1E). Macroconidia with 3-5 septations were straight to slightly curved, 23.8-40.3 µm in length and 2.6-3.9 µm in width, with predominantly 5-septate macroconidia on carnation leaf agar (CLA) (Figure 1F). However, neither microconidia or chlamydospores were observed on CLA. The morphological characteristics of the isolate were consistent with the description observed previously for Fusarium humuli species complex (Wang et al. 2019). To confirm morphological identification, ITS, CAM, TEF-1α, RPB1 and RPB2 were amplified using the primers ITS5/ITS4 (White et al. 1990), CL1/CL2A (O'Donnell et al. 2000), EF1/EF2 (O'Donnell et al. 1998), Fa/G2R (O'Donnell et al. 2010), and 5f2/11ar (O'Donnell et al. 2010), respectively. BLASTn analysis of the ITS sequence (GenBank accession no. MZ768912), EF-1α (MZ824669), CAM (MZ824670), RPB1 (MZ824672) and RPB2 (MZ824673) alignment showed 99.55%, 99.68%, 99.85%, 97.61% and 99.76% identity to those of F. humuli CQ1039 (MK280845, MK289570, MK289712, MK289840 and MK289724), respectively. Multilocus phylogenetic analyses showed that the sequences of ITS, CAM, EF-1α, RPB1, and RPB2 of the isolate belonged to the incarnatum clade (FIESC-33) of the F. incarnatum-equiseti species complex with an independent branch (Figure 2). Pathogenicity tests were conducted on one-month-old Chinese yam seedlings using a seedling root dip method (Li et al. 2013). The roots and rhizomes of seedlings grown to two meters in height were dipped into spore suspensions (1×106 spores/mL) of isolate JXRC11 for 30 min and then transferred into 20 cm diameter plastic pots containing steam-sterilized soil and placed in a greenhouse under 12 h photoperiod. After 15 d, the inoculated seedlings showed typical wilt symptoms similar to those observed in farm fields, whereas the control remained unaffected (Figure 1G-H). The pathogen was then re-isolated from the infected plants, the re-isolations were identified as F. humuli by sequencing EF-1α, fulfilling the Koch's postulates. It has been reported that the pathogen F. oxysporum Schlecht causes Fusarium wilt in five species of Dioscorea (Nwankiti and Arene, 1978). Moreover, at least 5 species of Fusarium were identified as a causative agent of Chinese yam wilt (Fang et al. 2020). To our knowledge, this is the first report of Fusarium wilt disease on Chinese yam caused by a member of the F. humuli in Jiangxi, China. This report will contribute to developing management strategies to control the disease.

Biochar significantly reduced fumigant emissions and benefited germination and plant growth under field conditions

Soil fumigation continues to play an important role in soil disinfection, but tools to significantly reduce emissions while providing environmental benefits (e.g., biochar) are lacking. The objective of this study was to determine the effects of biochar products on fumigant 1,3-dichloropropene (1,3-D) and chloropicrin (CP) emissions, their distribution and persistence in soil, nematode control, and potential toxicity to plants in a field trial. Treatments included three biochar products [two derived from almond shells (ASB) at either 550 or 900 °C pyrolysis temperature and one from coconut shells (CSB) at 550 °C] at 30 and 60 t ha^-1, a surface covering with a low permeability film (TIF), and no surface covering (control). A mixture of 1,3-D (∼65%) and CP (∼35%) was injected to ∼60 cm soil depth at a combined rate of 640 kg ha^-1. All biochar treatments significantly reduced emissions by 38-100% compared to the control. The ASB (900 °C) at both rates reduced emissions as effectively as the TIF (by 99-100%). Both fumigant emission reduction and residue in surface soil were positively correlated with biochar's adsorption capacity while cucumber germination rate and dry biomass were negatively correlated with residual fumigant concentrations in surface soil. This research demonstrated the potential and benefits of using biochar produced from local orchard feedstocks to control fumigant emissions. Additional research is needed to maximize the benefits of biochar on fumigant emission reductions without impacting plant growth.

Soil properties affect vapor-phase adsorption to regulate dimethyl disulfide diffusion in soil

Dimethyl disulfide (DMDS) is efficacious against nematodes and other soil-borne pathogens known to reduce crop quality and yield. Previous studies reported inconsistent efficacy and suggested that the diffusion of DMDS varied with different soil types. The effect of soil adsorption on gaseous DMDS diffusion through different soil types is poorly understood. To clarify the role and mechanism of soil adsorption in the diffusion of gaseous DMDS in soil, we have studied the diffusion rate constant (R_t) of gaseous DMDS in soils using a soil column experiment. The adsorption of DMDS at each gas-soil, soil-water and gas-water partition was measured by a batch-equilibrium headspace method. The results showed the DMDS adsorption equilibrium was well-described by the nonlinear Freundlich isotherm and the linear Henry isotherm. R_t values were strongly negatively correlated with the Henry coefficient (K_d) values. The K_d values of dry soil were several orders of magnitude higher than those observed in moist soil within each moisture content range. The K_d values in dry soil were strongly positively correlated with soil pore size (<2 nm). However, when the soil moisture content ranged from 3 to 12% (w/w), the K_d values were strongly correlated with specific surface area (SSA). Elevated temperatures promoted the gaseous phase of DMDS (consistent with Henry's Law) and its diffusion through soil. The soil-water partition coefficient (K'_f) ranged from 1.83 to 2.20 μg^11/n mL^1/n g^-1 in tested soils. Our results suggest that the DMDS vapor-phase diffusion in soil was significantly affected by soil adsorption, which in turn depended on the soil's properties especially the SSA and soil moisture content. These findings suggest applicators can reduce the risk of unsatisfactory and inconsistent efficacy results against soil-borne pests by adjusting the DMDS dose and fumigation period according to soil type, moisture conditions, and other environmental factors.

Site-Specific Controlled-Release Imidazolate Framework-8 for Dazomet Smart Delivery to Improve the Effective Utilization Rate and Reduce Biotoxicity

An accurate controlled-release strategy of pesticides is considered desirable in sustainable agriculture. A site-specific nanorelease system of dazomet (DZ) was proposed by employing the zeolitic imidazolate framework-8 composite (DZ@ZIF-8) by a one-pot method. The synthetic parameters of DZ@ZIF-8 were optimized, and the loading content of DZ was maximized. ZIF-8 endowed DZ with a pH-sensitive behavior. The collapse of the DZ@ZIF-8 structure and the site-specific release of DZ were triggered by acidic substances produced by Botrytis cinerea. In vitro and pot experiments showed that the fungicidal activity of DZ@ZIF-8 was about 36.3 and 42.7% higher than that of DZ, respectively. DZ is conventionally used before a crop is planted because of its volatility and toxicity. However, DZ@ZIF-8 could avoid phytotoxicity of DZ to plants, which made the application of DZ possible during plant growth. Moreover, the acute toxicity to zebrafish changed from high to moderate levels. This study highlights a potential strategy that improves DZ effective utilization and reduces side effects.

Microbial regulation of nitrous oxide emissions from chloropicrin-fumigated soil amended with biochar

The microbial mechanism underpinning biochar's ability to reduce emissions of the potent greenhouse gas nitrous oxide (N₂O) is little understood. We combined high-throughput gene sequencing with a dual-label ¹⁵N-¹⁸O isotope to examine microbial mechanisms operative in biochar made from Crofton Weed (BC1) or pine wood pellets (BC2) and the N₂O emissions from those biochar materials when present in chloropicrin (CP)-fumigated soil. Both BC1 and BC2 reduced N₂O total emissions by 62.9-71.9% and 48.8-52.0% in CP-fumigated soil, respectively. During the 7-day fumigation phase, however, both BC1 and BC2 increased N₂O production by significantly promoting nirKS and norBC gene abundance, which indicated that the N₂O emission pathway had switched from heterotrophic denitrification to nitrifier denitrification. During the post-fumigation phase, BC1 and BC2 significantly decreased N₂O production as insufficient nitrogen was available to support rapid population increases of nitrifying or denitrifying bacteria. BC1 and BC2 significantly reduced CP's inhibition of nitrifying archaeal bacteria (AOA, AOB) and the denitrifying bacterial genes (nirS, nirK, nosZ), which promoted those bacterial populations in fumigated soil to similar levels observed in unfumigated soil. Our study provided insight on the impact of biochar and microbes on N₂O emissions.

Organic fertilizers activate soil enzyme activities and promote the recovery of soil beneficial microorganisms after dazomet fumigation

Soil fumigation can reduce the impact of soil-borne diseases, weeds and insect pests on commercial crop production. Unfortunately, fumigation also kills beneficial microorganisms. In this study, we explored if dazomet fumigation could be used in combination with organic fertilizers (silicon fertilizer, potassium humate organic fertilizer, Bacillus microbial fertilizer, and mixtures of the last two) to reduce its impact on soil beneficial microorganisms. We evaluated the effects of adding these fertilizers after fumigation on the soil's physical and chemical properties and its enzyme activities, as well as its effects on the soil microbial communities under continuous production for >20 years. We found that fertilizers applied after fumigation increased the soil nitrate nitrogen content by 11.6%-29.4%, increased available potassium content by 5.6%-26.3% and increased organic matter content by 28.5%-48.8%. In addition, soil conductivity and water content increased significantly by 8.2%-26.5% and 8.0%-16.0%, respectively. The activities of soil catalase and soil sucrase were significantly increased by 6.2%-15.9% and 133.1%-238.5%, respectively. High-throughput DNA sequencing showed that fertilizers applied after fumigation increased the relative abundance of the phyla Proteobacteria, Actinobacteria and Ascomycota; and the genera Sphingomonas, Chaetomium and Mortierella. Silicon fertilizer applied after fumigation has the most significant promotion effect on soil micro-ecological health. The results showed that organic fertilizers applied after fumigation can improve the soil's fertility, activate soil enzyme activities and promote the recovery of soil beneficial microorganisms, which are all factors that improve crop quality and yield.

Efficacy and economics evaluation of seed rhizome treatment combined with preplant soil fumigation on ginger soilborne disease, plant growth, and yield promotion

BACKGROUND

Ginger (Zingiber officinale Roscoe) is widely planted around the world. Owing to continuous planting, ginger is seriously affected by soilborne fungi, bacteria, and nematodes. Although preplant soil fumigation is an effective prevention strategy of soilborne diseases, individual fumigant and technology could not provide effective control of ginger soilborne disease. In our research, different combinations of soil fumigants and seed rhizome treatments were evaluated by monitoring the soil pathogens population, ginger growth, yield, and estimation of economic benefits.

RESULTS

Soil fumigation effectively reduced the population of soilborne pathogens, and chloropicrin had a better control effect on soilborne pathogens than dazomet did. Preplant soil fumigation and seed rhizome treatment not only provide good control of soilborne disease, but also reduced the incidence of plant foliar pest and disease. Average yield increase rate of seed rhizome treatment was 12.0%; the highest yield increase was 24.4%. The average cost of seed rhizome treatment only increased by about 2.86%, but the rate of net revenue increase for the seed rhizome treatment reached up to 19.1%.

CONCLUSION

Seed rhizome treatment is a very cost-effective soilborne disease control technology. In the management of soilborne diseases, the combined application of soil fumigation and seed rhizome treatment can reduce the risk of crops infected by soilborne diseases and ensure high and stable crop yields. © 2021 Society of Chemical Industry.

Organic fertilizer activates soil beneficial microorganisms to promote strawberry growth and soil health after fumigation

Soil fumigants aim to control soil-borne diseases below levels that affect economic crop production, but their use also reduces the abundance of beneficial microorganisms. Previous studies have shown that adding various types of fertilizers to soil after fumigation can reshape the soil microbial community and regulate crop growth. We fumigated soil with dazomet (DZ) that had been cropped continuously for more than 20 years. After fumigation we applied silicon fertilizer, potassium humate organic fertilizer, Bacillus microbial fertilizer or a mixture of the last two. We studied the effects of different fertilizers treatments on the soil's physicochemical properties, enzyme activities, key soil pathogens and beneficial microbes. We found that fertilizers applied after fumigation promoted soil beneficial microorganisms (such as Fimicutes, Chloroflexi, Bacillus and Actinomadura) restoration; increased Fusarium and Phytophthora pathogen mortality, the content of ammonium nitrogen, sucrase enzyme activity; and increased strawberry fruit yield. A significant increase in strawberry yield was positively correlated with increases in beneficial microorganisms such as Gemmatimonadota, Firmicutes, Bacillus and Flavisolibacter. We concluded that organic fertilizer applied after fumigation significantly increased the number of beneficial microorganisms, improved the physicochemical properties of the soil, increased soil enzyme activities, inhibited the growth of soil pathogens to increase strawberry fruit yield. In summary, organic fertilizer activated soil beneficial microorganisms after soil fumigation, promoted soil health, and increased strawberry fruit yield.

Impact of Biochar on Rhizosphere Bacterial Diversity Restoration Following Chloropicrin Fumigation of Planted Soil

Chloropicrin (CP) can effectively combat soil-borne diseases but has significant side effects on nontarget microorganisms. The rhizosphere microflora play a crucial role in promoting plant growth and protecting plants from infection by soil-borne pathogens. We conducted a laboratory pot experiment to evaluate the effect of CP on the rhizosphere soil bacterial flora and the effect of biochar amendments on the reconstruction of microbial communities. Our results show that CP fumigation and biochar additions promoted the growth of cucumber plants in the later stage of the pot experiment. CP significantly inhibited the rhizobacterial diversity and changed the community composition. Biochar amendments after CP fumigation shortened the time for the rhizobacterial diversity to recover to unfumigated levels. Biochar amendments promoted the transplantation of new populations to empty microbiome niches that were caused by CP and, in particular, stimulated many beneficial microorganisms to become the predominant flora. The relative abundances of many functional taxa related to plant-disease suppressiveness and pollutant bioremediation increased, including Pseudomonas, Stenotrophomonas, Bacillus, Massilia, Acinetobacter, Delftia, Micromonospora, Cytophagaceae, and Flavisolibacter. These changes stimulated by biochar amendments would promote multifunctionality in the soil rhizosphere and benefit plant growth and disease resistance.

Combination of modified biochar and polyurea microcapsules to co-encapsulate a fumigant via interface polymerization for controlled release and enhanced bioactivity

BACKGROUND

Soil fumigants-the most effective agrochemicals for managing soil-borne diseases-have been used extensively. However, high volatility, moderate toxicity and insufficient effective duration considerably limit their application. In the present study, interface polymerization was used to combine modified biochar (BC) and polyurea microcapsules (MCs) to co-encapsulate allyl isothiocyanate (AITC), developing a model fumigant for controlled release (AITC@BC-MCs).

RESULTS

The physical characteristics of BC modified by sand-milling were significantly improved. In addition, chemical properties and morphological features of AITC@BC-MCs characterized by integrated methods revealed successful preparation of BC-MCs. Compared with monolayer MCs, BC-MCs could significantly delay AITC release owing to the composite obstruction effect. Moreover, modifying BC endowed the cargo molecules with a pH-responsive release property. Additionally, this composite showed a longer persistent duration by prolonging AITC degradation half-life, which was 3.2-3.5-fold greater than that of the AITC technical concentrate under different soil conditions. Finally, the control efficacy of the AITC@BC-MC against pathogens, including nematodes and fungi, as well as against weeds was significantly enhanced at the same dose, but the composite did not inhibit seed germination and growth after 10 days when fumigated soil was aerated.

CONCLUSION

Construction of a composite encapsulation system enhanced pesticide efficacy, reduced dose via controlled release and delayed fumigant degradation in soil, indicating the great potential of this strategy for developing an effective and environmentally friendly fumigant formulation. © 2021 Society of Chemical Industry.

Fresh chicken manure fumigation reduces the inhibition time of chloropicrin on soil bacteria and fungi and increases beneficial microorganisms

Chloropicrin (CP) controls soil-borne plant diseases caused by pathogenic microbes, increases crop yield, but has a long-term inhibitory effect on beneficial soil microorganisms. Therefore, we evaluated the effects of biofumigation material fresh chicken manure (FCM) on soil microorganisms, and the duration of those effects in this experiment. Our results showed that in the laboratory, FCM significantly increased substrate-induced respiration (SIR) of soil microorganisms by 2.2-3.2 times at 80 d compared to the control, however, CP significantly inhibited the SIR of soil microorganisms. FCM and CP increased NH4+-N concentration within 40 days which then returned to the control level. FCM increased NO3--N by 2.82-5.78 times by 80 days, compared with the control, while the concentration of NO3--N in the CP treatment was not significantly different from the control at the 80 day. Although in the laboratory FCM inhibited the relative abundance of 16 S rRNA and the nitrogen cycle functional genes AOA amoA, AOB amoA, nirK and nosZ over a 40-day period, the taxonomic diversity of soil bacteria and fungi in the FCM treatment were restored to unfumigated level within 90 days in the field. However, CP treatment has a strong inhibitory effect on soil microorganisms after 90 days. Importantly, the relative abundance of some beneficial microorganisms that control soil-borne pathogenic microbes or degrade pollutants increased significantly in FCM, including Bacillus, Pseudomonas and Streptomyces bacterial genera and Chaetomium and Mycothermus fungal genera. Noteworthy, like CP, FCM still had a strong inhibitory effect on Fusarium at 90 d. Our results indicated that FCM not only increased the content of inorganic nitrogen and improved the respiration rate of soil microorganisms, but it also shortened the recovery time of beneficial soil microorganisms and increased taxonomic diversity. Our previous reports showed that FCM and CP treatments had the same effect in disease control and crop growth. Combined with the results of this experiment, we believe that FCM has the potential to replace CP, which would eliminate CP's detrimental environmental impact, improve farmer safety and promote sustainable crop production.

Effects of soil type, moisture content and organic amendment rate on dimethyl disulfide distribution and persistency in soil

Understanding the distribution and persistence of the fumigant dimethyl disulfide (DMDS) under different soil conditions would contribute to a more environmentally sustainable use of this gas. We determined the effects of soil type, soil moisture content and soil organic amendment rate on DMDS distribution and persistency using soil columns in the laboratory. The peak concentrations of DMDS at 60 cm soil depth in sandy loam soil, black soil and red loam soil were 1.9 μg cm^-3, 0.77 μg cm^-3, 0.22 μg cm^-3, respectively. The total soil residues of DMDS in sandy loam soil, black soil and red loam soil were 0.4, 1.3 and 1.3%, respectively. The peak concentrations of DMDS at 60 cm soil depth and the total soil residues of DMDS applied decreased from 3.2 μg cm^-3 to 0.9 μg cm^-3 and 3.3 to 0.5% when soil moisture content increased from 6 to 18%, respectively. Incremental increases (0-5%) in organic amendment rates decreased DMDS distribution through the soils and increased soil residues. Wait periods were required of 7, 21 and 21 days after polyethylene (PE) film was removed to reduce residues sufficiently for cucumber seed germination in sandy loam soil, black soil and red loam soil with 12% moisture content and 0% organic amendment rate, respectively. However, no wait period was required for successful cucumber seed germination in sandy loam soils (Beijing) with 6, 12 or 18% moisture content or organic amendment rates of 1 or 5%, respectively, but in commercial practice 7 days delay would be prudent. Our results indicated that soil type, soil moisture content and organic amendment rates significantly affected DMDS distribution, persistency and residues in soil. Those factors should be taken into consideration by farmers when determining the appropriate dose of DMDS that will control soil pests and diseases in commercially-produced crops.

Effects of chloropicrin fumigation combined with biochar on soil bacterial and fungal communities and Fusarium oxysporum

Chloropicrin (CP) can cause long-term damage to beneficial microbes which reduces soil health. Biochar (BC) can mitigate against the effects of CP by reducing the time for beneficial microbes to recover after CP fumigation. In this study, we used Real-Time Quantitative PCR to determine the effects of different rates of BC added to CP-fumigated soil on the speed of recovery of bacteria and fungi population and on changes to gene copy number of the target pathogen Fusarium oxysporum. And then we compared the structure and composition of the beneficial microbial community in the different treatments soil by using High throughput Illumina sequencing. As the results shown, adding 1 or 3% BC after CP fumigation accelerated the recovery of bacterial and fungal populations without increasing F. oxysporum abundance. BC also promoted the recovery of beneficial bacteria Rokubacteria and Latescibacteria damaged by CP. And these two bacteria may be related to the immunity of soil to F. oxysporum. In CP-fumigated soil, BC improved the disease resistance of the soil by increasing beneficial microbes, such as Steroidobacter, Sphingomonas, Purpureocillium and Mortierella. This combination of CP and BC is a new concept that could encourages the development of a healthy and sustainable soil ecosystems while controlling plant pathogens.

Chloropicrin alternated with dazomet improved the soil's physicochemical properties, changed microbial communities and increased strawberry yield

Chloropicrin (Pic) and dazomet (DZ) are effective soil fumigants that are often used to reduce soil-borne pathogens that would otherwise reduce crop yield. As Pic is scheduled to be banned, we investigated whether its consumption could be halved by alternating it with DZ. We observed that Pic alternated with DZ increased the soil NH₄⁺-N content by 28.74-47.07 times, increased available potassium content by 40.80%-46.81% and increased electrical conductivity by 39.23%-85.81%. It generally improved the soil's physicochemical properties. High-throughput DNA sequencing showed that Pic alternated with DZ changed the taxonomic diversity of bacteria and fungi by increasing the relative abundance of Bacillus and Firmicutes, and by decreasing Proteobacteria, Acidobacteria and Sphingomonas. Moreover, Pic alternated with DZ can inhibit key soil pathogens by more than 90% and significantly increased strawberry yield by 78.22%-116.12%. In terms of strawberry production, we recommend using DZ in the first year and Pic in the second year. Our results showed significant ecological benefit and yield benefit when Pic consumption was halved by alternating it with DZ.

Bio-activation of soil with beneficial microbes after soil fumigation reduces soil-borne pathogens and increases tomato yield

Soil-borne diseases have become increasingly problematic for farmers producing crops intensively under protected agriculture. Although soil fumigants are convenient and effective for minimizing the impact of soil-borne disease, they are most often detrimental to beneficial soil microorganisms. Previous research showed that bio-activation of soil using biological control agents present in biofertilizers or organic fertilizers offered promise as a strategy for controlling soil-borne pathogens when the soil was bio-activated after fumigation. Our research sought to determine how bio-activation can selectively inhibit pathogens while promoting the recovery of beneficial microbes. We monitored changes in the soil's physicochemical properties, its microbial community and reductions in soil-borne pathogens. We found that the population density of Fusarium and Phytophthora were significantly reduced and tomato yield was significantly increased when the soil was bio-activated. Soil pH and soil catalase activity were significantly increased, and the soil's microbial community structure was changed, which may have enhanced the soil's ability to reduce Fusarium and Phytophthora. Our results showed that soil microbial diversity and relative abundance of beneficial microorganisms (such as Sphingomonas, Bacillus, Mortierella and Trichoderma) increased shortly after bio-activation of the soil, and were significantly and positively correlated with pathogen suppression. The reduction in pathogens may have been due to a combination of fumigation-fertilizer that reduced pathogens directly, or the indirect effect of an optimized soil microbiome that improved the soil's non-biological factors (such as soil pH, fertility structure), enhanced the soil's functional properties and increased tomato yield.

Degradation Mode of PBAT Mulching Film and Control Methods During Its Degradation Induction Period

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The plastic film plays an important role in China's agricultural production. However, the large-scale use of plastic film has also produced a very serious problem of agricultural film pollution. Biodegradable polymers have attracted much attention because of the environmental pollution caused by traditional plastic mulching film. The most typical one is poly (butylene adipate co butylene terephthalate, PBAT). Poly (Butylene Adipate-co-Terephthalate) (PBAT) is a kind of aliphatic–aromatic polyesters with excellent biodegradability and mechanical processing properties. Therefore, it has been rapidly developed and widely used in the industry. However, there are clear requirements for the degradation period of agricultural film. At present, the degradable materials available on the market are difficult to meet the requirements of all crops for their degradation period. In this paper, the basic properties，degradation process and ways to delay the degradation of PBAT are reviewed to improve the degradation period of plastic film prepared by using this kind of material. Among them, the degradation process includes photodegradation, biodegradation and hydrolysis. The ways to delay the degradation include adding chain extender, light stabilizer, anti-hydrolysis agent and antibacterial agent. These can provide a theoretical basis for the research and development of biodegradable film with controllable degradation cycle. The future research and development of biodegradable polymers mainly focus on controllable degradation rate, stable degradation cycle, new materials and reducing research and development costs.

2-Hydroxypropyl-β-cyclodextrin encapsulates dimethyl disulfide producing a controlled release formulation

Dimethyl disulfide (DMDS), a soil fumigant, is an effective, broad-spectrum compound that often replaces bromomethane (MB) in the prevention and treatment of soil-borne diseases. However, the disadvantages of DMDS include toxicity, volatility, pungent odor, risk of human exposure, and environmental pollution. Cyclodextrin (CD) has been widely used as a carrier of chemicals in many industries due to its functional advantages and safety. In this study, a DMDS-controlled release formulation was developed by encapsulating DMDS in the cavity of 2-hydroxypropyl-β-cyclodextrin (HP-β-CD). This formulation reduced DMDS usage and production costs. Orthogonal experimental design, Fourier transform infrared (FT-IR), Scanning electron microscopy (SEM), Thermal gravity analysis (TGA) characterization, efficacy comparison, safety, and other aspects of the evaluation showed that under the best preparation conditions, the encapsulation rate was 81.49%. The efficacy of DMDS@HP-β-CD was similar to unformulated DMDS. The efficacy duration of the formulation was about two times longer than DMDS, and it was safer to use. This study reveals a cyclodextrin-DMDS formulation with reduced toxicity, longer duration, environmental safety and sustainability.

Multi-Encapsulation Combination of O/W/O Emulsions with Polyurea Microcapsules for Controlled Release and Safe Application of Dimethyl Disulfide

Dimethyl disulfide (DMDS), a promising alternative fumigant, has been highly desirable for excellent management of soil pests and diseases. However, high volatility and moderate toxicity of this sulfide limit its application. To address these issues, a novel controlled release formulation of DMDS was proposed employing multiple emulsions and polyurea microcapsules (DMDS@MEs-MCs). The successful combination of the two technologies was revealed by confocal laser scanning microscopy, scanning electron microscopy, thermogravimetric analysis, and Fourier transform infrared. According to the multiple encapsulation structure, the encapsulation efficiency decreased by only 3.13% after thermal storage, compared with a 15.21% decrease of microcapsules made with only a monolayer film. DMDS@MEs-MCs could effectively control the release of active ingredient, which increased applicator and environmental safety during application. Moreover, it could be facilely used by spraying and drip irrigation instead of a special fumigation device. The innovative formulation exhibited better control efficacy on soil pathogens (Fusarium spp. and Phytophthora spp.) and root-knot nematodes (Meloidogyne spp.) than DMDS technical concentration (DMDS TC). In addition, it did not inhibit seed germination after 10 days when the plastic film was removed from the fumigated soil. This method appears to be of broad interest for the development of safe and handy fumigant application.

Alarmin-activated B cells accelerate atherosclerosis after myocardial infarction via plasma cell-immunoglobulin dependent mechanisms

Introduction

Myocardial infarction (MI) accelerates atherosclerosis and for years greatly increases the risk of recurrent cardiovascular events, such as stroke and MI. B cell-derived autoantibodies produced in response to MI also persist for years.

Purpose

We investigated the role of B cells in adaptive immune responses to MI.

Methods

We used an apolipoprotein-E-deficient (ApoE−/−) mouse model of MI-accelerated atherosclerosis to assess the importance of B cells using loss and gain of function approaches. In loss of function experiment, after inducing an MI we depleted B cells using an anti-CD20 antibody. Gain of function experiments involve transfers of purified MI-B cells from different donor mice, isolated one week after MI, into atherosclerotic ApoE−/− mice.

Results

Depletion of B cells in MI mice prevented immunoglobulin G accumulation in plaques and MI-induced acceleration of atherosclerosis. Adoptive transfer of wildtype MI-B cells into atherosclerotic ApoE−/− mice greatly increased IgG accumulation in plaque and accelerated atherosclerosis in recipient mice. Cytokines that promote humoral immunity were also greatly increased in B cells activated by MI. These cells formed germinal centres within the spleen where they differentiated into antibody-producing plasma cells. Transfer of MI-B cells deficient in Blimp-1, the transcriptional repressor that drives their terminal differentiation to antibody-producing plasma cells failed to accelerate atherosclerosis in recipient mice. Alarmins released from infarcted heart were responsible for activation of B cells via toll-like receptors; transfer of MI-B cells deficient in MyD88, the canonical adaptor protein for inflammatory signaling downstream of toll-like receptors, prevented acceleration of atherosclerosis in recipient mice.

Conclusion

Our data implicate early B cell activation and autoantibodies as a central cause for accelerated atherosclerosis post MI and identifies novel therapeutic strategies towards preventing recurrent cardiovascular events such as MI and stroke.

Funding Acknowledgement

Type of funding source: Public grant(s) – National budget only. Main funding source(s): National Health and Medical Research Council of Australia

Organic fertilizer improves soil fertility and restores the bacterial community after 1,3-dichloropropene fumigation

Although fumigants can effectively control soil-borne diseases they are typically harmful to beneficial microorganisms unless methods are developed to encourage their survival after fumigation. The soil fumigant 1,3-dichloropropene (1,3-D) is widely used because of its effective management of pathogenic nematodes and weeds. After fumigation with 1,3-D, Bacillus subtilis and Trichoderma harzianum fertilizer (either singularly or together) or humic acid were added to soil that had been used to produce tomatoes under continuous production for >20 years. We evaluated changes to the soil's physicochemical properties and enzyme activity in response to these fertilizer treatments, and the effects of these changes on beneficial bacteria. Fertilizer applied after fumigation increased the content of ammonium nitrogen, nitrate nitrogen, available phosphorus, available potassium and organic matter, and it promoted an increase in pH and electrical conductivity. The activity of urease, sucrase and catalase enzymes in the soil increased after fumigation. Taxonomic identification of bacteria using genetic analysis techniques showed that fertilizer applied after fumigation increased the abundance of Actinobacteria and the relative abundance of the biological control genera Sphingomona, Pseudomonas, Bacillus and Lysobacter. The abundance of these beneficial bacteria increased significantly when B. subtilis and T. harzianum were applied together. These results showed that fertilizer applied after fumigation can increase the abundance of beneficial microorganisms in the soil within a short period of time, which improved the soil's fertility, ecological balance and potentially crop quality and yield.

Biochar mitigates the negative effect of chloropicrin fumigation on beneficial soil microorganisms

Chloropicrin (CP) is the most commonly used soil fumigant worldwide. Although CP effectively controls soilborne pathogens, it is also detrimental to beneficial soil microorganisms unless measures can be put in place to protect them from the effects of fumigation. In this study, we evaluated the ability of biochar made from the invasive weed Eupatorium adenophorum to mitigate the effects of CP fumigation on beneficial species. Our results showed that the addition of biochar to the soil effectively reduced the detrimental effects of CP on beneficial species and their ecological functions. Biochar added to CP-fumigated soil shortened the time to 28-84 days for microbial diversity and nitrogen cycle functions to be restored to unfumigated levels. At the same time, the inorganic nitrogen (NH₄⁺-N, NO₃^--N) content and N₂O production potential level in CP-fumigated soil returned to unfumigated levels relatively quickly, which showed that nitrogen metabolism improved with the addition of biochar. The mitigation effect of biochar in CP-fumigated soil was more evident at higher biochar amendment rates. Our results suggest that the addition of biochar to CP-fumigated soil significantly reduced the impact of CP on beneficial species and their ecological functions, and significantly shortened the time for beneficial species to recover to pre-fumigation levels. Field research is required to determine biochar's ability to mitigate the impact of CP and other fumigants on beneficial species and to quantify its benefits on crop quality and yield.

Effects of Dazomet Fumigation on Soil Phosphorus and the Composition of phoD-Harboring Microbial Communities

The soil phosphorus (P) cycle and P transformation are largely driven by the soil bacterial microbial community. However, little is known about the effects of dazomet (DZ) soil fumigation on soil P and soil microbial communities associated with P transformation. This research investigated P released from three farm soils as a result of DZ fumigation and changes in enzyme activity, gene abundance, and the encoding alkaline phosphatase PhoD microbial community. After DZ fumigation, we observed a briefly significant increase in the available P and the active P fractionation. The soil ALP activity, 16s rRNA abundance, and the phoD gene decreased significantly after DZ fumigation. The abundance and diversity of phoD-harboring microbes also decreased shortly after fumigation, increased significantly 14-28 days later, and then decreased again toward the end of the experimental period of 86 days. The shared OTUs between treatments became fewer with increasing time after fumigation. The changes in available P and the active P fractionation after DZ fumigation were significantly correlated with the abundance of the dominant phoD-harboring microbes. DZ fumigation promoted P mineralization in these farm soils and changed the composition of phoD-harboring microbial communities, which will benefit crops able to absorb and use P.

Soil properties, presence of microorganisms, application dose, soil moisture and temperature influence the degradation rate of Allyl isothiocyanate in soil

Allyl isothiocyanate (AITC) is a soil fumigant derived from plants that can effectively control soil-borne diseases. Fully understanding the impact of various factors on its degradation can contribute to its effectiveness against pests and diseases. First, orthogonal design determined the extraction method of AITC in soil, that is using ethyl acetate as the extraction reagent, vortexing for 1 min as the extraction method and holding for 30 min as the method time. Then we studied the effects of soil texture and environmental factors on the rate and extent of AITC degradation in soil. The half-lives of nine origins soils varied from 12.2 to 71.8 h that were affected by the soil's electrical conductivity, available nitrogen, pH and organic matter content. Biotic degradation of AITC contributed significantly (68%-90%) of the total AITC degradation in six soil types. The degradation rate of AITC decreased as the initial dose of AITC increased. The degradation rate of AITC in Suihua soil generally increased with increasing temperature and soil moisture. The effect of temperature on AITC degradation was more pronounced when the soil was moist, which has practical implications for the control of soil pests and diseases. In agricultural soil, the soil's characteristics and environmental factors should be considered when determining the appropriate AITC dose suitable for soil borne disease while at the same time minimizing emissions and impact on the environment.

Chloropicrin fumigation alters the soil phosphorus and the composition of the encoding alkaline phosphatase PhoD gene microbial community

The transformation of phosphorus (P) compounds in soil depends largely on soil microbial communities and is sensitive to agricultural practices. However, the effects of soil fumigation on soil P, and microbes involved in P transformation, are unknown. Our results showed that chloropicrin (CP) fumigation significantly increased the available-P, Leached-P and active-P fractionation (inorganic P extracted from H₂O, NaHCO₃ and NaOH) in Shangdong and Miyun soils in the early stages of culture, while soil alkaline phosphatase (ALP) activity and phoD gene abundance decreased significantly. Leached-P in fumigated soil was positively correlated with increased active-P fractionation, indicating that it was an important source of soil Leached-P after fumigation. The changes in P-fractionation, Leached-P and ALP after fumigation were also significantly correlated with the composition of the microbial communities. CP fumigation briefly stimulated an increase in the abundance and diversity of phoD-harboring microbial communities and promoted the mineralization process of soil P. PICRUSt metagenomic analysis showed an increase in the relative abundance of microorganisms with involved in carbohydrate/lipid transport and metabolism functions after fumigation. These results suggest CP fumigation altered soil P transformation and phoD-harboring microbes that might lead to an increased risk of P enrichment in waterways.

Comparison of headspace solid-phase microextraction and solvent extraction method for the simultaneous analysis of various soil fumigants in soil or water by gas chromatography-mass spectrometry

The quantity of soil fumigants has increased globally that has focused attention on their environmental behavior. However, simultaneous analysis of traces of fumigant residues is often unreported because analysis methods are not readily available to measure them at low concentrations. In this study, typical solvent extraction methods were compared with headspace solid-phase microextraction methods. Both methods can be used for simultaneously measuring the concentrations of five commonly used soil fumigants in soil or water. The solvent extraction method showed acceptable recovery (76-103%) and intraday relative standard deviations (0.8-11%) for the five soil fumigants. The headspace solid-phase microextraction method also showed acceptable recovery (72-104%) and precision rates (1.3-17%) for the five soil fumigants. The solvent extraction method was more precise and more suitable for analyzing relatively high fumigant residue levels (0.05-5 μg/g) contained in multiple soil samples. The headspace solid-phase microextraction method, however, had a much lower limits of detection (0.09-2.52 μg/kg or μg/L) than the solvent extraction method (5.8-29.2 μg/kg), making headspace solid-phase microextraction most suitable for trace analysis of these fumigants. The results confirmed that the headspace solid-phase microextraction method was more convenient and sensitive for the determination of fumigants to real soil samples.

Scent of a Killer: Microbial Volatilome and Its Role in the Biological Control of Plant Pathogens

The use of synthetic fungicides represents the most common strategy to control plant pathogens. Excessive and/or long-term distribution of chemicals is responsible for increased levels of environmental pollution, as well as adverse health consequence to humans and animals. These issues are deeply influencing public perception, as reflected by the increasing demand for safer and eco-friendly agricultural commodities and their by-products. A steadily increasing number of research efforts is now devoted to explore the use of safer and innovative approaches to control plant pathogens. The use of microorganisms as biological control agents (BCAs) represents one of the most durable and promising strategies. Among the panoply of microbial mechanisms exerted by BCAs, the production of volatile organic compounds (VOCs) represents an intriguing issue, mostly exploitable in circumstances where a direct contact between the pathogen and its antagonist is not practicable. VOCs are potentially produced by all living microorganisms, and may be active in the biocontrol of phytopathogenic oomycetes, fungi, and bacteria by means of antimicrobial activity and/or other cross-talk interactions. Their biological effects, the reduced residuals in the environment and on agricultural commodities, and the ease of application in different agricultural systems make the use of VOCs a promising and sustainable approach to replace synthetic fungicides in the control of plant pathogens. In this review, we focus on VOCs produced by bacteria and fungi and on their role in the cross-talk existing between the plant pathogens and their host. Biologic systemic effect of the microbial volatile blends on both pathogen and host plant cells is also briefly reviewed.

Effects of Fumigation with Allyl Isothiocyanate on Soil Microbial Diversity and Community Structure of Tomato

As a substitute for methyl bromide, effects of allyl isothiocyanate (AITC) on nontarget microorganisms in soil are poorly understood. This study measured the half-life of AITC in the soil as well as its effects on the soil substrate-induced respiration (SIR) and on communities of soil bacteria and fungi. The results showed that AITC had a short half-life and a short-term inhibition of SIR; high-throughput sequencing analysis showed that AITC had less effect on bacterial than fungal communities. Fumigation reduced the diversity of soil bacteria temporarily, but stimulated the diversity of soil fungi in the long-term and significantly changed the structure of the fungal community. Following AITC fumigation there were significant increases in the relative abundance of probiotics such as Sphingomonas, Streptomyces, Hypocreales, Acremonium, Aspergillus, and Pseudallescheria that help to control plant diseases. Our study provided useful information for assessing the ecological safety of AITC.

Comparative analysis of the effects of five soil fumigants on the abundance of denitrifying microbes and changes in bacterial community composition

Soil fumigation is currently the most effective method for controlling soil-borne pests and diseases in high-value crops. To better understand the effect of chloropicrin (CP), dazomet (DZ), dimethyl disulfide (DMDS), allyl isothiocyanate (AITC) and 1,3-dichloropropene (1,3-D) fumigants on soil microorganisms, this study monitored changes in the diversity and community composition of soil bacteria involved in denitrification using real-time PCR and high-throughput gene sequencing techniques. These five fumigants significantly decreased the bacterial population size in some phyla including Proteobacteria, Chloroflexi and Acidobacteria, and increased the bacterial population size in other phyla such as Firmicutes, Gemmatimonadetes, Actinobacteria, Verrucomicrobia, Saccharibacteria and Parcubacteria. Although bacterial diversity declined after CP fumigation, it was briefly stimulated by the other four fumigants. Meanwhile, all five fumigants temporarily decreased populations of denitrifying bacteria containing the napA, narG, nirS or nirK enzyme-encoding genes. Denitrifiers bearing the cnorB, qnorB or nosZ genes were relatively stable following DZ and DMDS fumigation. However, cnorB and nosZ decreased initially following CP, AITC and 1,3-D fumigation. Simultaneously, the abundance of qnorB significantly increased in AITC and 1,3-D fumigated soils. These results showed that soil fumigation significantly shifted the abundance and community structure of denitrifying bacteria. This study will help to predict the response of different phyla of denitrifying bacteria to soil fumigation.

Effects of multi-year biofumigation on soil bacterial and fungal communities and strawberry yield

Biofumigation is an effective, non-chemical method to control soil-borne pests and diseases and to maximize crop yield. We studied the responses of soil bacterial and fungal communities, the soil's nutritional state and strawberry yield, when the soil was biofumigated each year for five consecutive years using fresh chicken manure (BioFum). BioFum significantly increased the soil's NH₄⁺-N, NO₃^--N, available P and K and organic matter. Fusarium spp. and Phytophthora spp. which are known to cause plant disease, were significantly decreased after BioFum. In addition, Biofum increased the soil's temperature, enhanced chlorophyll levels in the leaves of strawberry plants, and the soluble sugar and ascorbic acid content in strawberry fruit. We used high-throughput gene sequencing to monitor changes in the soil's bacterial and fungal communities. Although BioFum significantly decreased the diversity of these communities, it increased the relative abundance of some biological control agents in the phylum Actinobacteria and the genera Pseudomonas, Bacillus and Chaetomium. An increase in these biological control agents would reduce the incidence of soil-borne pathogens and plant disease. Although strawberry marketable yield using BioFum was higher in the first three years, the decline in the final two years could be due to the accumulation of P and K which may have delayed flowering and fruiting. Methods to overcome yield losses using BioFum need to be developed in the future. Our research, however, showed that BioFum enhanced soil fertility, reduced the presence of soil pathogens, increased the relative abundance of beneficial bacteria and fungi and improved strawberry quality. Unlike chemical soil treatments that can cause pest and disease resistance when used continuously over many years, our multi-year research program on BioFum showed that this treatment provided significant benefits to the soil, plant and strawberry fruit.

Assessment of the potential of a reduced dose of dimethyl disulfide plus metham sodium on soilborne pests and cucumber growth

Methyl bromide (MB), a dominant ozone-depleting substance, is scheduled to be completely phased out for soil fumigation by December 30th 2018, in China. The combined effects of dimethyl disulfide (DMDS) plus metham sodium (MNa) were assessed in controlling soilborne pests for soil fumigation. A study was designed in laboratory for the evaluation of the efficacy of DMDS + MNa to control major soilborne pests. At the same time, two trials were conducted in cucumber field located in Tongzhou (in 2012) and Shunyi (in 2013), respectively, in order to assess the potential of DMDS + MNa in controlling soilborne pests. Laboratory studies disclosed positive synergistic effects of almost all four used combinations on Meloidogyne spp., Fusarium spp., Phytophthora spp., Abutilon theophrasti and Digitaria sanguinalis. Field trials found that DMDS + MNa (30 + 21 g a. i. m-2), both at a 50% reduced dose, effectively suppressed Meloidogyne spp. with a low root galling index (2.1% and 11.7%), significantly reduced the levels of Phytophthora and Fusarium spp. with a low root disease index (7.5% and 15.8%), gave very high cucumber yields (6.75 kg m-2 and 10.03 kg m-2), and increased income for cucumber growers with the highest economic benefits (20.91 ¥ m-2 and 23.58 ¥ m-2). The combination treatment provided similar results as MB standard dose treatment (40 g a. i. m-2) or DMDS standard dose treatment (60 g a. i. m-2) in pest control and yield, but was more effective than MNa standard dose treatment (42 g a. i. m-2). Usage of all chemical treatments gave better significant results than the untreated group of control. Considering the economic benefits, the DMDS plus MNa combination (30 + 21 g a. i. m-2) could be used for soil fumigation in cucumber production in China.

Dimethyl disulfide (DMDS) as an effective soil fumigant against nematodes in China

Root-knot nematode is an important soil pest in horticulture crops and constrains the protected cultivation development after methyl bromide (MB) was phased out in China. Dimethyl disulfide (DMDS) exhibits excellent efficacy against nematodes. Laboratory experiments and field trials were set up to clarify DMDS dose, efficacy, and yield. A dose-response experiment using three methods showed that DMDS presented high efficacy against the nematode Meloidogyne incongnita. The LC50 values of direct fumigation activity in the dessicator method were 0.086 and 0.070 mg L-1 for DMDS and 1,3-D, 29.865 and 18.851 mg L-1 for DMDS and 1,3-D of direct contact activity in the small tube method, 6.438 and 3.061 mg L-1 for DMDS and 1,3-D of soil fumigation activity in the soil fumigation method, respectively. The field trials indicated that DMDS showed an excellent efficacy of 80%-94% on root-knot nematode applied at 10-100 g m-2 on tomato in Tongzhou, Beijing. The crop yields showed no significant difference after applying 10-80 g m-2 DMDS. Results indicate that DMDS applied at 10 g m-2 for controlling root-knot nematode in Beijing is cost effective. In conclusion, DMDS is an excellent soil fumigant that can be used for controlling root-knot nematode and can be an potential novel alternative to MB in China.

Chloropicrin alternated with biofumigation increases crop yield and modifies soil bacterial and fungal communities in strawberry production

Chloropicrin (Pic) and biofumigation are both considered effective chemical and non-chemical alternatives to methyl bromide, respectively, for controlling crop-limiting soil-borne pests and diseases. In this study, we evaluated the effects of Pic alone and 'chloropicrin alternated with biofumigation' (CAB) on the soil's physico-chemical properties and strawberry yield, as well as their effects on soil bacterial and fungal communities. The contents of NO₃^--N, available phosphorus and potassium, and electrical conductivity were all significantly increased when CAB was used. In addition, CAB also significantly increased the strawberry marketable yield. High-throughput gene sequencing showed the species abundance of some soil bacteria and fungi was significantly increased such as the phyla Proteobacteria, Bacteroidetes, Actinobacteria and Ascomycota when CAB was used. However, CAB decreased the relative abundance of the phyla Firmicutes, Chloroflexi, Gemmatimonadete and Zygomycota. These results indicated that CAB could improve the physico-chemical properties of soil for strawberry production, increase the genetic diversity of microbes in the soil and enhance marketable fruit yield.