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Franklin O, Fransson P, Hofhansl F, Jansen S, Joshi J. Optimal balancing of xylem efficiency and safety explains plant vulnerability to drought. Ecol Lett 2023; 26:1485-1496. [PMID: 37330625 DOI: 10.1111/ele.14270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 05/05/2023] [Accepted: 05/05/2023] [Indexed: 06/19/2023]
Abstract
In vast areas of the world, forests and vegetation are water limited and plant survival depends on the ability to avoid catastrophic hydraulic failure. Therefore, it is remarkable that plants take hydraulic risks by operating at water potentials (ψ) that induce partial failure of the water conduits (xylem). Here we present an eco-evolutionary optimality principle for xylem conduit design that explains this phenomenon based on the hypothesis that conductive efficiency and safety are optimally co-adapted to the environment. The model explains the relationship between the tolerance to negative water potential (ψ50 ) and the environmentally dependent minimum ψ (ψmin ) across a large number of species, and along the xylem pathway within individuals of two species studied. The wider hydraulic safety margin in gymnosperms compared to angiosperms can be explained as an adaptation to a higher susceptibility to accumulation of embolism. The model provides a novel optimality-based perspective on the relationship between xylem safety and efficiency.
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Affiliation(s)
- Oskar Franklin
- International Institute for Applied Systems Analysis, Laxenburg, Austria
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Peter Fransson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany
| | - Florian Hofhansl
- International Institute for Applied Systems Analysis, Laxenburg, Austria
| | | | - Jaideep Joshi
- International Institute for Applied Systems Analysis, Laxenburg, Austria
- Institute of Geography, University of Bern, Bern, Switzerland
- Oeschger Centre for Climate Change Research, University of Bern, Bern, Switzerland
- Complexity Science and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
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2
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Rius BF, Filho JPD, Fleischer K, Hofhansl F, Blanco CC, Rammig A, Domingues TF, Lapola DM. Higher functional diversity improves modeling of Amazon forest carbon storage. Ecol Modell 2023. [DOI: 10.1016/j.ecolmodel.2023.110323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
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3
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Joshi J, Stocker BD, Hofhansl F, Zhou S, Dieckmann U, Prentice IC. Towards a unified theory of plant photosynthesis and hydraulics. Nat Plants 2022; 8:1304-1316. [PMID: 36303010 PMCID: PMC9663302 DOI: 10.1038/s41477-022-01244-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 08/04/2022] [Indexed: 06/01/2023]
Abstract
The global carbon and water cycles are governed by the coupling of CO2 and water vapour exchanges through the leaves of terrestrial plants, controlled by plant adaptations to balance carbon gains and hydraulic risks. We introduce a trait-based optimality theory that unifies the treatment of stomatal responses and biochemical acclimation of plants to environments changing on multiple timescales. Tested with experimental data from 18 species, our model successfully predicts the simultaneous decline in carbon assimilation rate, stomatal conductance and photosynthetic capacity during progressive soil drought. It also correctly predicts the dependencies of gas exchange on atmospheric vapour pressure deficit, temperature and CO2. Model predictions are also consistent with widely observed empirical patterns, such as the distribution of hydraulic strategies. Our unified theory opens new avenues for reliably modelling the interactive effects of drying soil and rising atmospheric CO2 on global photosynthesis and transpiration.
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Affiliation(s)
- Jaideep Joshi
- Advancing Systems Analysis Program, International Institute for Applied Systems Analysis, Laxenburg, Austria.
- Divecha Centre for Climate Change, Indian Institute of Science, Bengaluru, India.
- Complexity Science and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan.
| | - Benjamin D Stocker
- Department of Environmental Systems Science, ETH, Universitätsstrasse 2, Zürich, Switzerland
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Florian Hofhansl
- Biodiversity and Natural Resources Program, International Institute for Applied Systems Analysis, Laxenburg, Austria
| | - Shuangxi Zhou
- Department of Biological Sciences, Macquarie University, Macquarie Park, Australia
- CSIRO Agriculture and Food, Glen Osmond, South Australia, Australia
| | - Ulf Dieckmann
- Advancing Systems Analysis Program, International Institute for Applied Systems Analysis, Laxenburg, Austria
- Complexity Science and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
- Department of Evolutionary Studies of Biosystems, The Graduate University for Advanced Studies (Sokendai), Hayama, Kanagawa, Japan
| | - Iain Colin Prentice
- Department of Biological Sciences, Macquarie University, Macquarie Park, Australia
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Silwood Park Campus, Ascot, UK
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China
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4
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Fritz S, Laso Bayas JC, See L, Schepaschenko D, Hofhansl F, Jung M, Dürauer M, Georgieva I, Danylo O, Lesiv M, McCallum I. A Continental Assessment of the Drivers of Tropical Deforestation With a Focus on Protected Areas. Front Conserv Sci 2022. [DOI: 10.3389/fcosc.2022.830248] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Deforestation contributes to global greenhouse gas emissions and must be reduced if the 1.5°C limit to global warming is to be realized. Protected areas represent one intervention for decreasing forest loss and aiding conservation efforts, yet there is intense human pressure on at least one-third of protected areas globally. There have been numerous studies addressing the extent and identifying drivers of deforestation at the local, regional, and global level. Yet few have focused on drivers of deforestation in protected areas in high thematic detail. Here we use a new crowdsourced data set on drivers of tropical forest loss for the period 2008–2019, which has been collected using the Geo-Wiki crowdsourcing application for visual interpretation of very high-resolution imagery by volunteers. Extending on the published data on tree cover and forest loss from the Global Forest Change initiative, we investigate the dominant drivers of deforestation in tropical protected areas situated within 30° north and south of the equator. We find the deforestation rate in protected areas to be lower than the continental average for the Latin Americas (3.4% in protected areas compared to 5.4%) and Africa (3.3% compared to 3.9%), but it exceeds that of unprotected land in Asia (8.5% compared to 8.1%). Consistent with findings from foregoing studies, we also find that pastures and other subsistence agriculture are the dominant deforestation driver in the Latin Americas, while forest management, oil palm, shifting cultivation and other subsistence agriculture dominate in Asia, and shifting cultivation and other subsistence agriculture is the main driver in Africa. However, we find contrasting results in relation to the degree of protection, which indicate that the rate of deforestation in Latin America and Africa in strictly protected areas might even exceed that of areas with no strict protection. This crucial finding highlights the need for further studies based on a bottom up crowdsourced, data collection approach, to investigate drivers of deforestation both inside and outside protected areas.
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5
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Hofhansl F, Chacón‐Madrigal E, Brännström Å, Dieckmann U, Franklin O. Mechanisms driving plant functional trait variation in a tropical forest. Ecol Evol 2021; 11:3856-3870. [PMID: 33976780 PMCID: PMC8093716 DOI: 10.1002/ece3.7256] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Revised: 12/14/2020] [Accepted: 01/18/2021] [Indexed: 12/16/2022] Open
Abstract
Plant functional trait variation in tropical forests results from taxonomic differences in phylogeny and associated genetic differences, as well as, phenotypic plastic responses to the environment. Accounting for the underlying mechanisms driving plant functional trait variation is important for understanding the potential rate of change of ecosystems since trait acclimation via phenotypic plasticity is very fast compared to shifts in community composition and genetic adaptation. We here applied a statistical technique to decompose the relative roles of phenotypic plasticity, genetic adaptation, and phylogenetic constraints. We examined typically obtained plant functional traits, such as wood density, plant height, specific leaf area, leaf area, leaf thickness, leaf dry mass content, leaf nitrogen content, and leaf phosphorus content. We assumed that genetic differences in plant functional traits between species and genotypes increase with environmental heterogeneity and geographic distance, whereas trait variation due to plastic acclimation to the local environment is independent of spatial distance between sampling sites. Results suggest that most of the observed trait variation could not be explained by the measured environmental variables, thus indicating a limited potential to predict individual plant traits from commonly assessed parameters. However, we found a difference in the response of plant functional traits, such that leaf traits varied in response to canopy-light regime and nutrient availability, whereas wood traits were related to topoedaphic factors and water availability. Our analysis furthermore revealed differences in the functional response of coexisting neotropical tree species, which suggests that endemic species with conservative ecological strategies might be especially prone to competitive exclusion under projected climate change.
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Affiliation(s)
- Florian Hofhansl
- International Institute for Applied Systems AnalysisLaxenburgAustria
| | | | - Åke Brännström
- International Institute for Applied Systems AnalysisLaxenburgAustria
- Department of Mathematics and Mathematical StatisticsUmeå UniversityUmeåSweden
| | - Ulf Dieckmann
- International Institute for Applied Systems AnalysisLaxenburgAustria
- Department of Evolutionary Studies of BiosystemsThe Graduate University for Advanced Studies (Sokendai)HayamaJapan
| | - Oskar Franklin
- International Institute for Applied Systems AnalysisLaxenburgAustria
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6
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Franklin O, Harrison SP, Dewar R, Farrior CE, Brännström Å, Dieckmann U, Pietsch S, Falster D, Cramer W, Loreau M, Wang H, Mäkelä A, Rebel KT, Meron E, Schymanski SJ, Rovenskaya E, Stocker BD, Zaehle S, Manzoni S, van Oijen M, Wright IJ, Ciais P, van Bodegom PM, Peñuelas J, Hofhansl F, Terrer C, Soudzilovskaia NA, Midgley G, Prentice IC. Organizing principles for vegetation dynamics. Nat Plants 2020; 6:444-453. [PMID: 32393882 DOI: 10.1038/s41477-020-0655-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 04/02/2020] [Indexed: 06/11/2023]
Abstract
Plants and vegetation play a critical-but largely unpredictable-role in global environmental changes due to the multitude of contributing processes at widely different spatial and temporal scales. In this Perspective, we explore approaches to master this complexity and improve our ability to predict vegetation dynamics by explicitly taking account of principles that constrain plant and ecosystem behaviour: natural selection, self-organization and entropy maximization. These ideas are increasingly being used in vegetation models, but we argue that their full potential has yet to be realized. We demonstrate the power of natural selection-based optimality principles to predict photosynthetic and carbon allocation responses to multiple environmental drivers, as well as how individual plasticity leads to the predictable self-organization of forest canopies. We show how models of natural selection acting on a few key traits can generate realistic plant communities and how entropy maximization can identify the most probable outcomes of community dynamics in space- and time-varying environments. Finally, we present a roadmap indicating how these principles could be combined in a new generation of models with stronger theoretical foundations and an improved capacity to predict complex vegetation responses to environmental change.
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Affiliation(s)
- Oskar Franklin
- International Institute for Applied Systems Analysis, Laxenburg, Austria.
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden.
| | - Sandy P Harrison
- Department of Geography and Environmental Science, University of Reading, Reading, UK
| | - Roderick Dewar
- Plant Sciences Division, Research School of Biology, The Australian National University, Canberra, Australia
- Institute for Atmospheric and Earth System Research/Physics, University of Helsinki, Helsinki, Finland
| | - Caroline E Farrior
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA
| | - Åke Brännström
- International Institute for Applied Systems Analysis, Laxenburg, Austria
- Department of Mathematics and Mathematical Statistics, Umeå University, Umeå, Sweden
| | - Ulf Dieckmann
- International Institute for Applied Systems Analysis, Laxenburg, Austria
- Department of Evolutionary Studies of Biosystems, The Graduate University for Advanced Studies (Sokendai), Hayama, Japan
| | - Stephan Pietsch
- International Institute for Applied Systems Analysis, Laxenburg, Austria
| | - Daniel Falster
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, Australia
| | - Wolfgang Cramer
- Institut Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), Aix Marseille Université, CNRS, IRD, Avignon Université, Technopôle Arbois-Méditerranée, Aix-en-Provence, France
| | - Michel Loreau
- Centre for Biodiversity, Theory, and Modelling, Theoretical and Experimental Ecology Station, CNRS, Moulis, France
| | - Han Wang
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China
| | - Annikki Mäkelä
- Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Karin T Rebel
- Copernicus Institute of Sustainable Development, Environmental Sciences, Faculty of Geosciences, Utrecht University, Utrecht, The Netherlands
| | - Ehud Meron
- Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Israel
- Department of Physics, Ben-Gurion University of the Negev, Be'er Sheva, Israel
| | - Stanislaus J Schymanski
- Department of Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
| | - Elena Rovenskaya
- International Institute for Applied Systems Analysis, Laxenburg, Austria
| | - Benjamin D Stocker
- Department of Environmental Systems Sciences, ETH Zurich, Zurich, Switzerland
- CREAF, Cerdanyola del Vallès, Spain
| | - Sönke Zaehle
- Biogeochemical Integration Department, Max Planck Institute for Biogeochemistry, Jena, Germany
| | - Stefano Manzoni
- Department of Physical Geography, Stockholm University, Stockholm, Sweden
- Bolin Centre for Climate Research, Stockholm, Sweden
| | - Marcel van Oijen
- Centre for Ecology and Hydrology (CEH-Edinburgh), Bush Estate, Penicuik, UK
| | - Ian J Wright
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Philippe Ciais
- Laboratoire des Sciences du Climat et de l'Environnement, CEA CNRS UVSQ, Gif-sur-Yvette, France
| | - Peter M van Bodegom
- Environmental Biology Department, Institute of Environmental Sciences, CML, Leiden University, Leiden, The Netherlands
| | - Josep Peñuelas
- CREAF, Cerdanyola del Vallès, Spain
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Bellaterra, Spain
| | - Florian Hofhansl
- International Institute for Applied Systems Analysis, Laxenburg, Austria
| | - Cesar Terrer
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, CA, USA
| | - Nadejda A Soudzilovskaia
- Environmental Biology Department, Institute of Environmental Sciences, CML, Leiden University, Leiden, The Netherlands
| | - Guy Midgley
- Department Botany & Zoology, Stellenbosch University, Stellenbosch, South Africa
| | - I Colin Prentice
- Ministry of Education Key Laboratory for Earth System Modeling, Department of Earth System Science, Tsinghua University, Beijing, China
- Department of Biological Sciences, Macquarie University, North Ryde, New South Wales, Australia
- AXA Chair of Biosphere and Climate Impacts, Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, UK
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7
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Hofhansl F, Chacón-Madrigal E, Fuchslueger L, Jenking D, Morera-Beita A, Plutzar C, Silla F, Andersen KM, Buchs DM, Dullinger S, Fiedler K, Franklin O, Hietz P, Huber W, Quesada CA, Rammig A, Schrodt F, Vincent AG, Weissenhofer A, Wanek W. Climatic and edaphic controls over tropical forest diversity and vegetation carbon storage. Sci Rep 2020; 10:5066. [PMID: 32193471 PMCID: PMC7081197 DOI: 10.1038/s41598-020-61868-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 03/04/2020] [Indexed: 11/28/2022] Open
Abstract
Tropical rainforests harbor exceptionally high biodiversity and store large amounts of carbon in vegetation biomass. However, regional variation in plant species richness and vegetation carbon stock can be substantial, and may be related to the heterogeneity of topoedaphic properties. Therefore, aboveground vegetation carbon storage typically differs between geographic forest regions in association with the locally dominant plant functional group. A better understanding of the underlying factors controlling tropical forest diversity and vegetation carbon storage could be critical for predicting tropical carbon sink strength in response to projected climate change. Based on regionally replicated 1-ha forest inventory plots established in a region of high geomorphological heterogeneity we investigated how climatic and edaphic factors affect tropical forest diversity and vegetation carbon storage. Plant species richness (of all living stems >10 cm in diameter) ranged from 69 to 127 ha-1 and vegetation carbon storage ranged from 114 to 200 t ha-1. While plant species richness was controlled by climate and soil water availability, vegetation carbon storage was strongly related to wood density and soil phosphorus availability. Results suggest that local heterogeneity in resource availability and plant functional composition should be considered to improve projections of tropical forest ecosystem functioning under future scenarios.
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Affiliation(s)
- Florian Hofhansl
- International Institute for Applied Systems Analysis, Schlossplatz 1, A-2361, Laxenburg, Austria.
| | | | - Lucia Fuchslueger
- Department of Biology, Plants and Ecosystems, University of Antwerp, Antwerp, Belgium
| | - Daniel Jenking
- Escuela de Agronomía, Universidad de Costa Rica, San José, Costa Rica
| | - Albert Morera-Beita
- Laboratory of Applied Tropical Ecology, National University of Costa Rica, Heredia, Costa Rica
| | - Christoph Plutzar
- Department of Botany & Biodiversity Research, University of Vienna, Vienna, Austria
- Institute of Social Ecology, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Fernando Silla
- Area of Ecology, Faculty of Biology, University of Salamanca, Salamanca, Spain
| | - Kelly M Andersen
- Nanyang Technological University, Asian School of the Environment, 50 Nanyang Avenue, 639798, Singapore, Singapore
| | - David M Buchs
- School of Earth and Ocean Sciences, Cardiff University, Park Place, Cardiff, CF10 3AT, UK
| | - Stefan Dullinger
- Department of Botany & Biodiversity Research, University of Vienna, Vienna, Austria
| | - Konrad Fiedler
- Department of Botany & Biodiversity Research, University of Vienna, Vienna, Austria
| | - Oskar Franklin
- International Institute for Applied Systems Analysis, Schlossplatz 1, A-2361, Laxenburg, Austria
| | - Peter Hietz
- Department of Integrative Biology and Biodiversity Research, Institute of Botany, University of Natural Resources and Life Sciences, Vienna, Austria
| | - Werner Huber
- Department of Botany & Biodiversity Research, University of Vienna, Vienna, Austria
| | - Carlos A Quesada
- Instituto Nacional de Pesquisas da Amazônia, Coordenação de Dinâmica Ambiental, Avenida Ephigenio Salles 2239, Aleixo - 69000000, Manaus, AM, Brasil
| | - Anja Rammig
- Technical University of Munich, TUM School of Life Sciences Weihenstephan, Hans-Carl-v.-Carlowitz-Platz 2, 85354, Freising, Germany
| | - Franziska Schrodt
- School of Geography, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| | - Andrea G Vincent
- Escuela de Biología, Universidad de Costa Rica, San José, Costa Rica
| | - Anton Weissenhofer
- Department of Botany & Biodiversity Research, University of Vienna, Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology & Ecosystem Science, Division of Terrestrial Ecosystem Research, University of Vienna, Vienna, Austria
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8
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Rabl D, Gottsberger B, Brehm G, Hofhansl F, Fiedler K. Moth assemblages in Costa Rica rain forest mirror small‐scale topographic heterogeneity. Biotropica 2020. [DOI: 10.1111/btp.12677] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dominik Rabl
- Division of Tropical Ecology and Animal Biodiversity Department of Botany and Biodiversity Research University of Vienna Vienna Austria
| | - Brigitte Gottsberger
- Division of Tropical Ecology and Animal Biodiversity Department of Botany and Biodiversity Research University of Vienna Vienna Austria
| | - Gunnar Brehm
- Phyletisches Museum Institut für Zoologie und Evolutionsbiologie Friedrich‐Schiller‐Universität Jena Germany
| | - Florian Hofhansl
- International Institute for Applied Systems Analysis (IIASA)Laxenburg Austria
| | - Konrad Fiedler
- Division of Tropical Ecology and Animal Biodiversity Department of Botany and Biodiversity Research University of Vienna Vienna Austria
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9
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Prommer J, Walker TWN, Wanek W, Braun J, Zezula D, Hu Y, Hofhansl F, Richter A. Increased microbial growth, biomass, and turnover drive soil organic carbon accumulation at higher plant diversity. Glob Chang Biol 2020; 26:669-681. [PMID: 31344298 PMCID: PMC7027739 DOI: 10.1111/gcb.14777] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 07/10/2019] [Indexed: 05/05/2023]
Abstract
Species-rich plant communities have been shown to be more productive and to exhibit increased long-term soil organic carbon (SOC) storage. Soil microorganisms are central to the conversion of plant organic matter into SOC, yet the relationship between plant diversity, soil microbial growth, turnover as well as carbon use efficiency (CUE) and SOC accumulation is unknown. As heterotrophic soil microbes are primarily carbon limited, it is important to understand how they respond to increased plant-derived carbon inputs at higher plant species richness (PSR). We used the long-term grassland biodiversity experiment in Jena, Germany, to examine how microbial physiology responds to changes in plant diversity and how this affects SOC content. The Jena Experiment considers different numbers of species (1-60), functional groups (1-4) as well as functional identity (small herbs, tall herbs, grasses, and legumes). We found that PSR accelerated microbial growth and turnover and increased microbial biomass and necromass. PSR also accelerated microbial respiration, but this effect was less strong than for microbial growth. In contrast, PSR did not affect microbial CUE or biomass-specific respiration. Structural equation models revealed that PSR had direct positive effects on root biomass, and thereby on microbial growth and microbial biomass carbon. Finally, PSR increased SOC content via its positive influence on microbial biomass carbon. We suggest that PSR favors faster rates of microbial growth and turnover, likely due to greater plant productivity, resulting in higher amounts of microbial biomass and necromass that translate into the observed increase in SOC. We thus identify the microbial mechanism linking species-rich plant communities to a carbon cycle process of importance to Earth's climate system.
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Affiliation(s)
- Judith Prommer
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
| | - Tom W. N. Walker
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
- Department of Ecology and EvolutionUniversité de LausanneLausanneSwitzerland
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
| | - Judith Braun
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
- The Scottish Association for Marine ScienceObanUK
| | - David Zezula
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
| | - Yuntao Hu
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
- Lawrence Berkeley National LaboratoryBerkeleyCAUSA
| | - Florian Hofhansl
- International Institute for Applied Systems AnalysisLaxenburgAustria
| | - Andreas Richter
- Department of Microbiology and Ecosystem ScienceUniversity of ViennaViennaAustria
- International Institute for Applied Systems AnalysisLaxenburgAustria
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10
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Schepaschenko D, Chave J, Phillips OL, Lewis SL, Davies SJ, Réjou-Méchain M, Sist P, Scipal K, Perger C, Herault B, Labrière N, Hofhansl F, Affum-Baffoe K, Aleinikov A, Alonso A, Amani C, Araujo-Murakami A, Armston J, Arroyo L, Ascarrunz N, Azevedo C, Baker T, Bałazy R, Bedeau C, Berry N, Bilous AM, Bilous SY, Bissiengou P, Blanc L, Bobkova KS, Braslavskaya T, Brienen R, Burslem DFRP, Condit R, Cuni-Sanchez A, Danilina D, Del Castillo Torres D, Derroire G, Descroix L, Sotta ED, d'Oliveira MVN, Dresel C, Erwin T, Evdokimenko MD, Falck J, Feldpausch TR, Foli EG, Foster R, Fritz S, Garcia-Abril AD, Gornov A, Gornova M, Gothard-Bassébé E, Gourlet-Fleury S, Guedes M, Hamer KC, Susanty FH, Higuchi N, Coronado ENH, Hubau W, Hubbell S, Ilstedt U, Ivanov VV, Kanashiro M, Karlsson A, Karminov VN, Killeen T, Koffi JCK, Konovalova M, Kraxner F, Krejza J, Krisnawati H, Krivobokov LV, Kuznetsov MA, Lakyda I, Lakyda PI, Licona JC, Lucas RM, Lukina N, Lussetti D, Malhi Y, Manzanera JA, Marimon B, Junior BHM, Martinez RV, Martynenko OV, Matsala M, Matyashuk RK, Mazzei L, Memiaghe H, Mendoza C, Mendoza AM, Moroziuk OV, Mukhortova L, Musa S, Nazimova DI, Okuda T, Oliveira LC, Ontikov PV, Osipov AF, Pietsch S, Playfair M, Poulsen J, Radchenko VG, Rodney K, Rozak AH, Ruschel A, Rutishauser E, See L, Shchepashchenko M, Shevchenko N, Shvidenko A, Silveira M, Singh J, Sonké B, Souza C, Stereńczak K, Stonozhenko L, Sullivan MJP, Szatniewska J, Taedoumg H, Ter Steege H, Tikhonova E, Toledo M, Trefilova OV, Valbuena R, Gamarra LV, Vasiliev S, Vedrova EF, Verhovets SV, Vidal E, Vladimirova NA, Vleminckx J, Vos VA, Vozmitel FK, Wanek W, West TAP, Woell H, Woods JT, Wortel V, Yamada T, Nur Hajar ZS, Zo-Bi IC. The Forest Observation System, building a global reference dataset for remote sensing of forest biomass. Sci Data 2019; 6:198. [PMID: 31601817 PMCID: PMC6787017 DOI: 10.1038/s41597-019-0196-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Accepted: 08/19/2019] [Indexed: 11/09/2022] Open
Abstract
Forest biomass is an essential indicator for monitoring the Earth's ecosystems and climate. It is a critical input to greenhouse gas accounting, estimation of carbon losses and forest degradation, assessment of renewable energy potential, and for developing climate change mitigation policies such as REDD+, among others. Wall-to-wall mapping of aboveground biomass (AGB) is now possible with satellite remote sensing (RS). However, RS methods require extant, up-to-date, reliable, representative and comparable in situ data for calibration and validation. Here, we present the Forest Observation System (FOS) initiative, an international cooperation to establish and maintain a global in situ forest biomass database. AGB and canopy height estimates with their associated uncertainties are derived at a 0.25 ha scale from field measurements made in permanent research plots across the world's forests. All plot estimates are geolocated and have a size that allows for direct comparison with many RS measurements. The FOS offers the potential to improve the accuracy of RS-based biomass products while developing new synergies between the RS and ground-based ecosystem research communities.
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Affiliation(s)
- Dmitry Schepaschenko
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria.
- Forestry faculty, Bauman Moscow State Technical University, Mytischi, 141005, Russia.
| | - Jérôme Chave
- Laboratoire Evolution et Diversité Biologique CNRS/Université Paul Sabatier, Toulouse, France
| | | | - Simon L Lewis
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
- University College London, 30 Guilford Street, London, WC1N 1EH, UK
| | - Stuart J Davies
- Forest Global Earth Observatory, Smithsonian Tropical Research Institute, P.O. Box 37012, Washington 20013, USA
| | | | - Plinio Sist
- CIRAD, Forêts et Sociétés, Campus International de Baillarguet, Montpellier, F-34398, France
- Forêts et Sociétés, Univ Montpellier, CIRAD, Montpellier, F-34398, France
| | - Klaus Scipal
- European Space Agency, ESTEC, Noordwijk, The Netherlands
| | - Christoph Perger
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
- Spatial Focus GmbH, Vienna, Austria
| | - Bruno Herault
- CIRAD, Forêts et Sociétés, Campus International de Baillarguet, Montpellier, F-34398, France
- Forêts et Sociétés, Univ Montpellier, CIRAD, Montpellier, F-34398, France
- Department Foresterie et Environnement (DFR FOREN), Institut National Polytechnique Félix Houphouët-Boigny, INP-HB, Yamoussoukro, BP 2661, Côte d'Ivoire
| | - Nicolas Labrière
- Laboratoire Evolution et Diversité Biologique CNRS/Université Paul Sabatier, Toulouse, France
| | - Florian Hofhansl
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
| | - Kofi Affum-Baffoe
- Mensuration Unit, Forestry Commission of Ghana, 4 Third Avenue Ridge, Kumasi, POB M434, Ghana
| | - Alexei Aleinikov
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Alfonso Alonso
- Smithsonian Conservation Biology Institute, 1100 Jefferson Dr SW, Suite 3123, Washington, DC, 20560-0705, USA
| | - Christian Amani
- Centre for International Forestry Research, CIFOR, Jalan CIFOR, Situ Gede, Bogor, 16115, Indonesia
| | | | - John Armston
- Department of Geographical Sciences, University of Maryland, 2181 Lefrak Hall, College Park, MD, 20742, USA
- Joint Remote Sensing Research Program, School of Earth and Environmental Sciences, University of Queensland, Chamberlain Building (35), Campbell Road, St Lucia Campus, Brisbane, 4072, Australia
| | - Luzmila Arroyo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno Av. Irala 565 - casilla, 2489, Santa Cruz, Bolivia
| | - Nataly Ascarrunz
- IBIF, Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto # 28, Km 14 doble via La Guardia, Santa Cruz, Casilla, 6204, Bolivia
| | - Celso Azevedo
- Embrapa, Rodovia AM 10, km 29, Manaus, AM, 69010-970, Brazil
| | - Timothy Baker
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
| | - Radomir Bałazy
- Forest Research Institute, Department of Geomatics, Braci Leśnej 3, Sękocin Stary, Raszyn, 05-090, Poland
| | - Caroline Bedeau
- ONF, ONF-Réserve de Montabo Cayenne Cedex, Cayenne, BP 7002; 97307, French Guiana
| | - Nicholas Berry
- The Landscapes and Livelihoods Group, 20 Chambers St, Edinburgh, EH1 1JZ, UK
| | - Andrii M Bilous
- National University of Life and Environmental Sciences of Ukraine, General Rodimtsev 19, Kyiv, 3041, Ukraine
| | - Svitlana Yu Bilous
- National University of Life and Environmental Sciences of Ukraine, General Rodimtsev 19, Kyiv, 3041, Ukraine
| | | | - Lilian Blanc
- CIRAD, Forêts et Sociétés, Campus International de Baillarguet, Montpellier, F-34398, France
- Forêts et Sociétés, Univ Montpellier, CIRAD, Montpellier, F-34398, France
| | - Kapitolina S Bobkova
- Institute of Biology, Komi Scientific Center, Ural Branch of Russian Academy of Sciences, Kommunisticheskaya 28, Syktyvkar, 167982, Russia
| | - Tatyana Braslavskaya
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Roel Brienen
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
| | - David F R P Burslem
- School of Biological Sciences, University of Aberdeen, Cruickshank Building, St Machar Drive, Aberdeen, AB24 3UU, UK
| | - Richard Condit
- Morton Arboretum, 4100 Illinois Rte. 53, Lisle, 60532, IL, USA
| | - Aida Cuni-Sanchez
- Department of Environment and Geography, University of York, Heslington, York, YO10 5NG, UK
| | - Dilshad Danilina
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Dennis Del Castillo Torres
- Instituto de Investigaciones de la Amazonía Peruana, Av. Abelardo Quiñones km 2.5, Iquitos, Apartado Postal 784, Peru
| | - Géraldine Derroire
- CIRAD, UMR EcoFoG, Campus Agronomique - BP 701, Kourou, 97387, France, French Guiana
| | - Laurent Descroix
- ONF, ONF-Réserve de Montabo Cayenne Cedex, Cayenne, BP 7002; 97307, French Guiana
| | - Eleneide Doff Sotta
- Embrapa, Rodovia Juscelino Kubitscheck, Km 5, no 2.600, Macapa, Caixa Postal 10, CEP: 68903-419, Brazil
| | | | - Christopher Dresel
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
- Spatial Focus GmbH, Vienna, Austria
| | - Terry Erwin
- SI Entomology, Smithsonian Institution, PO Box 37012, MRC 187, Washington, DC, DC 20013-7012, USA
| | - Mikhail D Evdokimenko
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Jan Falck
- Department Forest Ecology and Management, The Swedish University of Agricultural Sciences, SLU, Umeå, SE-901 83, Sweden
| | - Ted R Feldpausch
- Geography, College of Life and Environmental Sciences, University of Exeter,Laver Building, North Park Road, Exeter, EX4 4QE, UK
| | - Ernest G Foli
- Forestry Research Institute of Ghana, UP Box 63, KNUST, Kumasi, Ghana
| | - Robin Foster
- The Field Musium, 1400S Lake Shore Dr, Chicago, IL, 60605, USA
| | - Steffen Fritz
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
| | | | - Aleksey Gornov
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Maria Gornova
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Ernest Gothard-Bassébé
- Institut Centrafricain de Recherche Agronomique, ICRA, BP 122, Bangui, Central African Republic
| | - Sylvie Gourlet-Fleury
- CIRAD, Forêts et Sociétés, Campus International de Baillarguet, Montpellier, F-34398, France
- Forêts et Sociétés, Univ Montpellier, CIRAD, Montpellier, F-34398, France
| | - Marcelino Guedes
- Embrapa, Rodovia Juscelino Kubitscheck, Km 5, no 2.600, Macapa, Caixa Postal 10, CEP: 68903-419, Brazil
| | - Keith C Hamer
- School of Biology, University of Leeds, Leeds, LS2 9JT, UK
| | - Farida Herry Susanty
- FOERDIA, Forestry and Environment Research Development and Innovation Agency, Jalan Gunung Batu No 5, Bogor, 16610, Indonesia
| | - Niro Higuchi
- Instituto Nacional de Pesquisas da Amazônia - Coordenação de Pesquisas em Silvicultura Tropical, Manaus, 69060-001, Brazil
| | - Eurídice N Honorio Coronado
- Instituto de Investigaciones de la Amazonía Peruana, Av. Abelardo Quiñones km 2.5, Iquitos, Apartado Postal 784, Peru
| | - Wannes Hubau
- School of Geography, University of Leeds, Leeds, LS2 9JT, UK
- U Gent-Woodlab, Laboratory of Wood Technology, Department of Environment, Ghent University, Ghent, 9000, Belgium
| | - Stephen Hubbell
- Department of Ecology and Evolutionary Biology, University of California, 621 Charles E. Young Dr. South, Los Angeles, CA, 90095-1606, USA
| | - Ulrik Ilstedt
- Department Forest Ecology and Management, The Swedish University of Agricultural Sciences, SLU, Umeå, SE-901 83, Sweden
| | - Viktor V Ivanov
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Milton Kanashiro
- Embrapa Amazonia Oriental, Travessa Doutor Enéas Pinheiro, Belém, PA, 66095-903, Brazil
| | - Anders Karlsson
- Department Forest Ecology and Management, The Swedish University of Agricultural Sciences, SLU, Umeå, SE-901 83, Sweden
| | - Viktor N Karminov
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Timothy Killeen
- World Wildlife Fund, Calle Diego de Mendoza 299, Santa Cruz de la Sierra, Bolivia
| | | | - Maria Konovalova
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Florian Kraxner
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
| | - Jan Krejza
- Global Change Research Institute CAS, Bělidla 986/4a, Brno, 603 00, Czech Republic
| | - Haruni Krisnawati
- FOERDIA, Forestry and Environment Research Development and Innovation Agency, Jalan Gunung Batu No 5, Bogor, 16610, Indonesia
| | - Leonid V Krivobokov
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Mikhail A Kuznetsov
- Institute of Biology, Komi Scientific Center, Ural Branch of Russian Academy of Sciences, Kommunisticheskaya 28, Syktyvkar, 167982, Russia
| | - Ivan Lakyda
- National University of Life and Environmental Sciences of Ukraine, General Rodimtsev 19, Kyiv, 3041, Ukraine
| | - Petro I Lakyda
- National University of Life and Environmental Sciences of Ukraine, General Rodimtsev 19, Kyiv, 3041, Ukraine
| | - Juan Carlos Licona
- IBIF, Instituto Boliviano de Investigacion Forestal, Av. 6 de agosto # 28, Km 14 doble via La Guardia, Santa Cruz, Casilla, 6204, Bolivia
| | - Richard M Lucas
- Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, SY23 3DB, UK
| | - Natalia Lukina
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Daniel Lussetti
- Department Forest Ecology and Management, The Swedish University of Agricultural Sciences, SLU, Umeå, SE-901 83, Sweden
| | - Yadvinder Malhi
- School of Geography and the Environment, University of Oxford, Oxford, OX1 3QY, UK
| | | | - Beatriz Marimon
- Laboratório de Ecologia Vegetal, Universidade do Estado de Mato Grosso, UNEMAT, Campus de Nova Xavantina, Nova Xavantina, Mato Grosso, 78.690-000, Brazil
| | - Ben Hur Marimon Junior
- Laboratório de Ecologia Vegetal, Universidade do Estado de Mato Grosso, UNEMAT, Campus de Nova Xavantina, Nova Xavantina, Mato Grosso, 78.690-000, Brazil
| | | | - Olga V Martynenko
- Russian Institute of Continuous Education in Forestry, Institutskaya 17, Pushkino, 141200, Russia
| | - Maksym Matsala
- National University of Life and Environmental Sciences of Ukraine, General Rodimtsev 19, Kyiv, 3041, Ukraine
| | - Raisa K Matyashuk
- Institute for Evolutionary Ecology of the National Academy of Sciences of Ukraine, Lebedev 37, Kyiv, 03143, Ukraine
| | - Lucas Mazzei
- Embrapa Amazonia Oriental, Travessa Doutor Enéas Pinheiro, Belém, PA, 66095-903, Brazil
| | - Hervé Memiaghe
- University of Oregon, 1585 E 13th Ave, Eugene, OR, 97403, USA
| | | | - Abel Monteagudo Mendoza
- Jardín Botánico de Missouri; Universidad Nacional de San Antonio Abad del Cusco, Oxapampa, Peru
| | - Olga V Moroziuk
- National University of Life and Environmental Sciences of Ukraine, General Rodimtsev 19, Kyiv, 3041, Ukraine
| | - Liudmila Mukhortova
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Samsudin Musa
- FRIM Forest Reserach Institute of Malaysia, 52109 Kepong, Selangor, Kuala Lumpur, Malaysia
| | - Dina I Nazimova
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Toshinori Okuda
- Hiroshima University, 1-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-8521, Japan
| | | | - Petr V Ontikov
- Forestry faculty, Bauman Moscow State Technical University, Mytischi, 141005, Russia
| | - Andrey F Osipov
- Institute of Biology, Komi Scientific Center, Ural Branch of Russian Academy of Sciences, Kommunisticheskaya 28, Syktyvkar, 167982, Russia
| | - Stephan Pietsch
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
| | - Maureen Playfair
- Center for Agricultural research in Suriname, CELOS, 1914, Paramaribo, Suriname
| | - John Poulsen
- Nicholas School of the Environment, Duke University, P.O. Box 90328, Durham, NC, 27708, USA
| | - Vladimir G Radchenko
- Institute for Evolutionary Ecology of the National Academy of Sciences of Ukraine, Lebedev 37, Kyiv, 03143, Ukraine
| | - Kenneth Rodney
- IIC, The Iwokrama International Centre for Rain Forest Conservation and Development, 77 High Street, Georgetown, Guyana
| | - Andes H Rozak
- Cibodas Botanic Gardens - Indonesian Institute of Sciences (LIPI), Jl. Kebun Raya Cibodas, Cipanas, Cianjur, 43253, Indonesia
| | - Ademir Ruschel
- Embrapa Amazonia Oriental, Travessa Doutor Enéas Pinheiro, Belém, PA, 66095-903, Brazil
| | - Ervan Rutishauser
- Smithsonian Tropical Research Institute, Balboa, Ancon, Panama 3092, Panama
| | - Linda See
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
| | - Maria Shchepashchenko
- Russian Institute of Continuous Education in Forestry, Institutskaya 17, Pushkino, 141200, Russia
| | - Nikolay Shevchenko
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Anatoly Shvidenko
- Ecosystems Services and Management Program, International Institute for Applied Systems Analysis, Laxenburg, A-2361, Austria
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Marcos Silveira
- Museu Universitário, Universidade Federal do Acre, BR 364, Km 04 - Distrito Industrial, Rio Branco, 69915-559, Brazil
| | - James Singh
- Guyana Forestry Commission, 1 Water Street, Kingston Georgetown, Guyana
| | - Bonaventure Sonké
- Plant Systematic and Ecology Laboratory, University of Yaoundé I, P.O. Box 047, Yaounde, Cameroon
| | - Cintia Souza
- Embrapa, Rodovia AM 10, km 29, Manaus, AM, 69010-970, Brazil
| | - Krzysztof Stereńczak
- Forest Research Institute, Department of Geomatics, Braci Leśnej 3, Sękocin Stary, Raszyn, 05-090, Poland
| | - Leonid Stonozhenko
- Russian Institute of Continuous Education in Forestry, Institutskaya 17, Pushkino, 141200, Russia
| | | | - Justyna Szatniewska
- Global Change Research Institute CAS, Bělidla 986/4a, Brno, 603 00, Czech Republic
| | - Hermann Taedoumg
- Plant Systematic and Ecology Laboratory, University of Yaoundé I, P.O. Box 047, Yaounde, Cameroon
- Bioversity international, P.O. Box 2008, Messa, Yaoundé, Cameroun
| | | | - Elena Tikhonova
- Center of Forest Ecology and Productivity of the Russian Academy of Sciences, Profsoyuznaya 84/32/14, Moscow, 117997, Russia
| | - Marisol Toledo
- Museo de Historia Natural Noel Kempff Mercado, Universidad Autónoma Gabriel Rene Moreno Av. Irala 565 - casilla, 2489, Santa Cruz, Bolivia
| | - Olga V Trefilova
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Ruben Valbuena
- School of Natural Sciences, Bangor University, Thoday Building. Deiniol Rd, Bangor, LL57 2UW, United Kingdom
| | - Luis Valenzuela Gamarra
- Jardín Botánico de Missouri; Universidad Nacional de San Antonio Abad del Cusco, Oxapampa, Peru
| | - Sergey Vasiliev
- Forestry faculty, Bauman Moscow State Technical University, Mytischi, 141005, Russia
| | - Estella F Vedrova
- V.N. Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Science, Academgorodok 50(28), Krasnoyarsk, 660036, Russia
| | - Sergey V Verhovets
- Siberian Federal University, Svobodnyy Ave, 79, Krasnoyarsk, 660041, Russia
- Reshetnev Siberian state university of science and technology, pr. Mira 82, Krasnoyarsk, 660049, Russia
| | - Edson Vidal
- Department of Forest Sciences, Luiz de Queiroz College of Agriculture, University of Sao Paolo, PO Box 9, Av. Pádua Dias, 11, Piracicaba, São Paulo, 13418-900, Brazil
| | - Nadezhda A Vladimirova
- State Nature Reserve Denezhkin Kamen, Lenina, 6, Sverdlovsk reg, Severouralsk, 624480, Russia
| | - Jason Vleminckx
- International Center for Tropical Botany, Department of Biological Sciences, Florida International University, 11200 S.W. 8th Street, Miami, 33199, FL, USA
| | | | - Foma K Vozmitel
- Forestry faculty, Bauman Moscow State Technical University, Mytischi, 141005, Russia
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem research, University of Vienna, Althanstrasse 14, Vienna, A-1090, Austria
| | - Thales A P West
- New Zealand Forest Research Institute (Scion) Te Papa Tipu Innovation Park, 49 Sala Street, Rotorua, 3046, New Zealand
| | - Hannsjorg Woell
- Unaffiliated (retired), Sommersbergseestrasse 291, Bad Aussee, 8990, Austria
| | - John T Woods
- W.R.T College of Agriculture and Forestry, University of Liberia, Capitol Hill, Monrovia, 9020, Liberia
| | - Verginia Wortel
- Center for Agricultural research in Suriname, CELOS, 1914, Paramaribo, Suriname
| | - Toshihiro Yamada
- Hiroshima University, 1-7-1 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-8521, Japan
| | - Zamah Shari Nur Hajar
- FRIM Forest Research Institute of Malaysia, 52109 Kepong, Selangor, Kuala Lumpur, Malaysia
| | - Irié Casimir Zo-Bi
- Department Foresterie et Environnement (DFR FOREN), Institut National Polytechnique Félix Houphouët-Boigny, INP-HB, Yamoussoukro, BP 2661, Côte d'Ivoire
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11
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Morera-Beita A, Sánchez D, Wanek W, Hofhansl F, Werner H, Chacón-Madrigal E, Montero-Muñoz JL, Silla F. Beta diversity and oligarchic dominance in the tropical forests of Southern Costa Rica. Biotropica 2019. [DOI: 10.1111/btp.12638] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Albert Morera-Beita
- Laboratorio de Ecología Tropical Aplicada; Universidad Nacional de Costa Rica; Heredia Costa Rica
| | - Damián Sánchez
- Laboratorio de Ecología Tropical Aplicada; Universidad Nacional de Costa Rica; Heredia Costa Rica
| | - Wolfgang Wanek
- Division of Terrestrial Ecosystem Research; Department of Microbiology & Ecosystem Science; University of Vienna; Vienna Austria
| | - Florian Hofhansl
- Division of Conservation Biology, Vegetation- and Landscape Ecology; Department of Botany & Biodiversity Research; University of Vienna; Vienna Austria
- Ecosystems Services and Management Program (ESM); International Institute for Applied Systems Analysis (IIASA); Laxenburg Austria
| | - Huber Werner
- Division of Tropical Ecology and Animal Biodiversity; Department of Botany & Biodiversity Research; University of Vienna; Vienna Austria
| | | | - Jorge L. Montero-Muñoz
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (CINVESTAV); Unidad de Mérida; Merida Yucatán México
| | - Fernando Silla
- Area of Ecology; Faculty of Biology; University of Salamanca; Salamanca Spain
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12
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Mooshammer M, Hofhansl F, Frank AH, Wanek W, Hämmerle I, Leitner S, Schnecker J, Wild B, Watzka M, Keiblinger KM, Zechmeister-Boltenstern S, Richter A. Decoupling of microbial carbon, nitrogen, and phosphorus cycling in response to extreme temperature events. Sci Adv 2017; 3:e1602781. [PMID: 28508070 PMCID: PMC5415334 DOI: 10.1126/sciadv.1602781] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Accepted: 02/24/2017] [Indexed: 05/10/2023]
Abstract
Predicted changes in the intensity and frequency of climate extremes urge a better mechanistic understanding of the stress response of microbially mediated carbon (C) and nutrient cycling processes. We analyzed the resistance and resilience of microbial C, nitrogen (N), and phosphorus (P) cycling processes and microbial community composition in decomposing plant litter to transient, but severe, temperature disturbances, namely, freeze-thaw and heat. Disturbances led temporarily to a more rapid cycling of C and N but caused a down-regulation of P cycling. In contrast to the fast recovery of the initially stimulated C and N processes, we found a slow recovery of P mineralization rates, which was not accompanied by significant changes in community composition. The functional and structural responses to the two distinct temperature disturbances were markedly similar, suggesting that direct negative physical effects and costs associated with the stress response were comparable. Moreover, the stress response of extracellular enzyme activities, but not that of intracellular microbial processes (for example, respiration or N mineralization), was dependent on the nutrient content of the resource through its effect on microbial physiology and community composition. Our laboratory study provides novel insights into the mechanisms of microbial functional stress responses that can serve as a basis for field studies and, in particular, illustrates the need for a closer integration of microbial C-N-P interactions into climate extremes research.
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Affiliation(s)
- Maria Mooshammer
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
- Corresponding author. (M.M.); (W.W.)
| | - Florian Hofhansl
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
| | - Alexander H. Frank
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
- Corresponding author. (M.M.); (W.W.)
| | - Ieda Hämmerle
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
| | - Sonja Leitner
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, 1190 Vienna, Austria
| | - Jörg Schnecker
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
| | - Birgit Wild
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
| | - Margarete Watzka
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
| | - Katharina M. Keiblinger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, 1190 Vienna, Austria
| | - Sophie Zechmeister-Boltenstern
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, 1190 Vienna, Austria
| | - Andreas Richter
- Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria
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13
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Adlassnig W, Weiss YS, Sassmann S, Steinhauser G, Hofhansl F, Baumann N, Lichtscheidl IK, Lang I. The copper spoil heap Knappenberg, Austria, as a model for metal habitats - Vegetation, substrate and contamination. Sci Total Environ 2016; 563-564:1037-1049. [PMID: 27185350 DOI: 10.1016/j.scitotenv.2016.04.179] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Revised: 04/20/2016] [Accepted: 04/25/2016] [Indexed: 06/05/2023]
Abstract
Historic mining in the Eastern Alps has left us with a legacy of numerous spoil heaps hosting specific, metal tolerant vegetation. Such habitats are characterized by elevated concentrations of toxic elements but also by high irradiation, a poorly developed substrate or extreme pH of the soil. This study investigates the distribution of vascular plants, mosses and lichens on a copper spoil heap on the ore bearing Knappenberg formed by Prebichl Layers and Werfener Schist in Lower Austria. It serves as a model for discriminating between various ecological traits and their effects on vegetation. Five distinct clusters were distinguished: (1) The bare, metal rich Central Spoil Heap was only colonised by highly resistant specialists. (2) The Northern and (3) Southern Peripheries contained less copper; the contrasting vegetation was best explained by the different microclimate. (4) A forest over acidic bedrock hosted a vegetation overlapping with the periphery of the spoil heap. (5) A forest over calcareous bedrock was similar to the spoil heap with regard to pH and humus content but hosted a vegetation differing strongly to all other habitats. Among the multiple toxic elements at the spoil heap, only Cu seems to exert a crucial influence on the vegetation pattern. Besides metal concentrations, irradiation, humidity, humus, pH and grain size distribution are important for the establishment of a metal tolerant vegetation. The difference between the species poor Northern and the diverse Southern Periphery can be explained by the microclimate rather than by the substrate. All plant species penetrating from the forest into the periphery of the spoil heap originate from the acidic but not from the calcareous bedrock.
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Affiliation(s)
- Wolfram Adlassnig
- University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Althanstraße 14, A-1090 Vienna, Austria
| | - Yasmin S Weiss
- University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Althanstraße 14, A-1090 Vienna, Austria
| | - Stefan Sassmann
- University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Althanstraße 14, A-1090 Vienna, Austria; University of Exeter, College of Life and Environmental Sciences, Biosciences, Stocker Road, Exeter EX4 4QD, United Kingdom
| | - Georg Steinhauser
- Leibniz University Hannover, Institute of Radioecology and Radiation Protection, Herrenhäuser Straße 2, D30419 Hannover, Germany
| | - Florian Hofhansl
- University of Vienna, Department of Microbiology and Ecosystem Science, Althanstraße 14, A-1090 Vienna, Austria; Instituto Nacional de Pesquisas da Amazônia, Coordenação de Dinâmica Ambiental, Manaus, Brazil
| | - Nils Baumann
- Helmholtz-Zentrum Dresden-Rossendorf, Division of Biogeochemistry, Bautzner Landstraße 400, D-01328 Dresden, Germany
| | - Irene K Lichtscheidl
- University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Althanstraße 14, A-1090 Vienna, Austria
| | - Ingeborg Lang
- University of Vienna, Core Facility Cell Imaging and Ultrastructure Research, Althanstraße 14, A-1090 Vienna, Austria.
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14
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Staudinger C, Mehmeti-Tershani V, Gil-Quintana E, Gonzalez EM, Hofhansl F, Bachmann G, Wienkoop S. Evidence for a rhizobia-induced drought stress response strategy in Medicago truncatula. J Proteomics 2016; 136:202-13. [PMID: 26812498 DOI: 10.1016/j.jprot.2016.01.006] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Revised: 12/16/2015] [Accepted: 01/11/2016] [Indexed: 01/05/2023]
Abstract
Drought stress hampers plant energy and biomass production; however it is still unknown how internal C:N balance and rhizobial symbiosis impact on plant response to water limitation. Here, the effect of differential optimal nitrogen nutrition and root nodule symbiosis on drought stress and rehydration responses of Medicago truncatula was assessed. Two groups of plants were nodulated with Sinorhizobium medicae or Sinorhizobium meliloti--differing in the performance of N fixation; the third group grew in a rhizobia-free medium and received mineral nitrogen fertilizer. In addition to growth analyses, physiological and molecular responses of the two systems were studied using ionomic, metabolomic and proteomic techniques. We found a significant delay in drought-induced leaf senescence in nodulated relative to non-nodulated plants, independent of rhizobial strain and uncoupled from initial leaf N content. The major mechanisms involved are increased concentrations of potassium and shifts in the carbon partitioning between starch and sugars under well-watered conditions, as well as the enhanced allocation of reserves to osmolytes during drought. Consequently, nodulated plants recovered more effectively from drought, relative to non-nodulated M. truncatula. Proteomic data suggest that phytohormone interactions and enhanced translational regulation play a role in increased leaf maintenance in nodulated plants during drought.
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Affiliation(s)
- Christiana Staudinger
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.
| | - Vlora Mehmeti-Tershani
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.
| | - Erena Gil-Quintana
- Department Environmental Science, Public Univeristy of Navarra Campus Arrosadía, 31006 Pamplona, Spain.
| | - Esther M Gonzalez
- Department Environmental Science, Public Univeristy of Navarra Campus Arrosadía, 31006 Pamplona, Spain.
| | - Florian Hofhansl
- Department of Microbiology and Ecosystem Science, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.
| | - Gert Bachmann
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.
| | - Stefanie Wienkoop
- Department of Ecogenomics and Systems Biology, University of Vienna, Althanstraße 14, 1090 Vienna, Austria.
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15
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Hofhansl F, Schnecker J, Singer G, Wanek W. New insights into mechanisms driving carbon allocation in tropical forests. New Phytol 2015; 205:137-146. [PMID: 25195521 DOI: 10.1111/nph.13007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Accepted: 07/18/2014] [Indexed: 06/03/2023]
Abstract
The proportion of carbon allocated to wood production is an important determinant of the carbon sink strength of global forest ecosystems. Understanding the mechanisms controlling wood production and its responses to environmental drivers is essential for parameterization of global vegetation models and to accurately predict future responses of tropical forests in terms of carbon sequestration. Here, we synthesize data from 105 pantropical old-growth rainforests to investigate environmental controls on the partitioning of net primary production to wood production (%WP) using structural equation modeling. Our results reveal that %WP is governed by two independent pathways of direct and indirect environmental controls. While temperature and soil phosphorus availability indirectly affected %WP via increasing productivity, precipitation and dry season length both directly increased %WP via tradeoffs along the plant economics spectrum. We provide new insights into the mechanisms driving %WP, allowing us to conclude that projected climate change could enhance %WP in less productive tropical forests, thus increasing carbon sequestration in montane forests, but adversely affecting lowland forests.
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Affiliation(s)
- Florian Hofhansl
- Department of Microbiology and Ecosystem Science, University of Vienna, Althanstraße 14, 1090, Vienna, Austria
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16
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Einzmann HJR, Beyschlag J, Hofhansl F, Wanek W, Zotz G. Host tree phenology affects vascular epiphytes at the physiological, demographic and community level. AoB Plants 2014; 7:plu073. [PMID: 25392188 PMCID: PMC4287691 DOI: 10.1093/aobpla/plu073] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2014] [Accepted: 10/27/2014] [Indexed: 05/27/2023]
Abstract
The processes that govern diverse tropical plant communities have rarely been studied in life forms other than trees. Structurally dependent vascular epiphytes, a major part of tropical biodiversity, grow in a three-dimensional matrix defined by their hosts, but trees differ in their architecture, bark structure/chemistry and leaf phenology. We hypothesized that the resulting seasonal differences in microclimatic conditions in evergreen vs. deciduous trees would affect epiphytes at different levels, from organ physiology to community structure. We studied the influence of tree leaf phenology on vascular epiphytes on the Island of Barro Colorado, Panama. Five tree species were selected, which were deciduous, semi-deciduous or evergreen. The crowns of drought-deciduous trees, characterized by sunnier and drier microclimates, hosted fewer individuals and less diverse epiphyte assemblages. Differences were also observed at a functional level, e.g. epiphyte assemblages in deciduous trees had larger proportions of Crassulacean acid metabolism species and individuals. At the population level a drier microclimate was associated with lower individual growth and survival in a xerophytic fern. Some species also showed, as expected, lower specific leaf area and higher δ(13)C values when growing in deciduous trees compared with evergreen trees. As hypothesized, host tree leaf phenology influences vascular epiphytes at different levels. Our results suggest a cascading effect of tree composition and associated differences in tree phenology on the diversity and functioning of epiphyte communities in tropical lowland forests.
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Affiliation(s)
- Helena J R Einzmann
- Department of Biology and Environmental Sciences, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky-Straße 9-11, D-26111 Oldenburg, Germany
| | - Joachim Beyschlag
- Department of Biology and Environmental Sciences, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky-Straße 9-11, D-26111 Oldenburg, Germany
| | - Florian Hofhansl
- Department of Microbiology and Ecosystem Science, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
| | - Gerhard Zotz
- Department of Biology and Environmental Sciences, Carl von Ossietzky University of Oldenburg, Carl-von-Ossietzky-Straße 9-11, D-26111 Oldenburg, Germany Smithsonian Tropical Research Institute, Apartado Postal 0843-03092, Balboa, Ancon, Panamá, República de Panamá
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17
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Mooshammer M, Wanek W, Hämmerle I, Fuchslueger L, Hofhansl F, Knoltsch A, Schnecker J, Takriti M, Watzka M, Wild B, Keiblinger KM, Zechmeister-Boltenstern S, Richter A. Adjustment of microbial nitrogen use efficiency to carbon:nitrogen imbalances regulates soil nitrogen cycling. Nat Commun 2014; 5:3694. [PMID: 24739236 PMCID: PMC3997803 DOI: 10.1038/ncomms4694] [Citation(s) in RCA: 424] [Impact Index Per Article: 42.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Accepted: 03/20/2014] [Indexed: 11/25/2022] Open
Abstract
Microbial nitrogen use efficiency (NUE) describes the partitioning of organic N taken up between growth and the release of inorganic N to the environment (that is, N mineralization), and is thus central to our understanding of N cycling. Here we report empirical evidence that microbial decomposer communities in soil and plant litter regulate their NUE. We find that microbes retain most immobilized organic N (high NUE), when they are N limited, resulting in low N mineralization. However, when the metabolic control of microbial decomposers switches from N to C limitation, they release an increasing fraction of organic N as ammonium (low NUE). We conclude that the regulation of NUE is an essential strategy of microbial communities to cope with resource imbalances, independent of the regulation of microbial carbon use efficiency, with significant effects on terrestrial N cycling. Nitrogen availability in soils is predominantly controlled by microorganisms, yet our understanding of their organic nitrogen use is limited. Mooshammer et al. show that microbial nitrogen use efficiency is dependent on resource stoichiometry and substrate type.
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Affiliation(s)
- Maria Mooshammer
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Ieda Hämmerle
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Lucia Fuchslueger
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Florian Hofhansl
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Anna Knoltsch
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Jörg Schnecker
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Mounir Takriti
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Margarete Watzka
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Birgit Wild
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
| | - Katharina M Keiblinger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Peter-Jordan-Strasse 82, 1190 Vienna, Austria
| | - Sophie Zechmeister-Boltenstern
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Peter-Jordan-Strasse 82, 1190 Vienna, Austria
| | - Andreas Richter
- Department of Microbiology and Ecosystem Science, Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
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18
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Schnecker J, Wild B, Hofhansl F, Eloy Alves RJ, Bárta J, Čapek P, Fuchslueger L, Gentsch N, Gittel A, Guggenberger G, Hofer A, Kienzl S, Knoltsch A, Lashchinskiy N, Mikutta R, Šantrůčková H, Shibistova O, Takriti M, Urich T, Weltin G, Richter A. Effects of soil organic matter properties and microbial community composition on enzyme activities in cryoturbated arctic soils. PLoS One 2014; 9:e94076. [PMID: 24705618 PMCID: PMC3976392 DOI: 10.1371/journal.pone.0094076] [Citation(s) in RCA: 80] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2013] [Accepted: 03/10/2014] [Indexed: 11/19/2022] Open
Abstract
Enzyme-mediated decomposition of soil organic matter (SOM) is controlled, amongst other factors, by organic matter properties and by the microbial decomposer community present. Since microbial community composition and SOM properties are often interrelated and both change with soil depth, the drivers of enzymatic decomposition are hard to dissect. We investigated soils from three regions in the Siberian Arctic, where carbon rich topsoil material has been incorporated into the subsoil (cryoturbation). We took advantage of this subduction to test if SOM properties shape microbial community composition, and to identify controls of both on enzyme activities. We found that microbial community composition (estimated by phospholipid fatty acid analysis), was similar in cryoturbated material and in surrounding subsoil, although carbon and nitrogen contents were similar in cryoturbated material and topsoils. This suggests that the microbial community in cryoturbated material was not well adapted to SOM properties. We also measured three potential enzyme activities (cellobiohydrolase, leucine-amino-peptidase and phenoloxidase) and used structural equation models (SEMs) to identify direct and indirect drivers of the three enzyme activities. The models included microbial community composition, carbon and nitrogen contents, clay content, water content, and pH. Models for regular horizons, excluding cryoturbated material, showed that all enzyme activities were mainly controlled by carbon or nitrogen. Microbial community composition had no effect. In contrast, models for cryoturbated material showed that enzyme activities were also related to microbial community composition. The additional control of microbial community composition could have restrained enzyme activities and furthermore decomposition in general. The functional decoupling of SOM properties and microbial community composition might thus be one of the reasons for low decomposition rates and the persistence of 400 Gt carbon stored in cryoturbated material.
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Affiliation(s)
- Jörg Schnecker
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
- Austrian Polar Research Institute, Vienna, Austria
- * E-mail:
| | - Birgit Wild
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
- Austrian Polar Research Institute, Vienna, Austria
| | - Florian Hofhansl
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
| | - Ricardo J. Eloy Alves
- Austrian Polar Research Institute, Vienna, Austria
- University of Vienna, Department of Ecogenomics and Systems Biology, Division of Archaea Biology and Ecogenomics, Vienna, Austria
| | - Jiří Bárta
- University of South Bohemia, Department of Ecosystems Biology, České Budějovice, Czech Republic
| | - Petr Čapek
- University of South Bohemia, Department of Ecosystems Biology, České Budějovice, Czech Republic
| | - Lucia Fuchslueger
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
| | - Norman Gentsch
- Leibniz Universität Hannover, Institut für Bodenkunde, Hannover, Germany
| | - Antje Gittel
- Austrian Polar Research Institute, Vienna, Austria
- University of Bergen, Centre for Geobiology, Department of Biology, Bergen, Norway
| | - Georg Guggenberger
- Leibniz Universität Hannover, Institut für Bodenkunde, Hannover, Germany
| | - Angelika Hofer
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
| | - Sandra Kienzl
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
| | - Anna Knoltsch
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
- Austrian Polar Research Institute, Vienna, Austria
| | - Nikolay Lashchinskiy
- Central Siberian Botanical Garden, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia
| | - Robert Mikutta
- Leibniz Universität Hannover, Institut für Bodenkunde, Hannover, Germany
| | - Hana Šantrůčková
- University of South Bohemia, Department of Ecosystems Biology, České Budějovice, Czech Republic
| | - Olga Shibistova
- Leibniz Universität Hannover, Institut für Bodenkunde, Hannover, Germany
- VN Sukachev Institute of Forest, Siberian Branch of Russian Academy of Sciences, Krasnoyarsk, Russia
| | - Mounir Takriti
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
- Austrian Polar Research Institute, Vienna, Austria
| | - Tim Urich
- Austrian Polar Research Institute, Vienna, Austria
- University of Vienna, Department of Ecogenomics and Systems Biology, Division of Archaea Biology and Ecogenomics, Vienna, Austria
| | - Georg Weltin
- International Atomic Energy Agency, Joint FAO/IAEA Division for Nuclear Techniques in Food and Agriculture, Soil and Water Management & Crop Nutrition Laboratory, Vienna, Austria
| | - Andreas Richter
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Vienna, Austria
- Austrian Polar Research Institute, Vienna, Austria
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19
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Prommer J, Wanek W, Hofhansl F, Trojan D, Offre P, Urich T, Schleper C, Sassmann S, Kitzler B, Soja G, Hood-Nowotny RC. Biochar decelerates soil organic nitrogen cycling but stimulates soil nitrification in a temperate arable field trial. PLoS One 2014; 9:e86388. [PMID: 24497947 PMCID: PMC3907405 DOI: 10.1371/journal.pone.0086388] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2013] [Accepted: 12/06/2013] [Indexed: 11/18/2022] Open
Abstract
Biochar production and subsequent soil incorporation could provide carbon farming solutions to global climate change and escalating food demand. There is evidence that biochar amendment causes fundamental changes in soil nutrient cycles, often resulting in marked increases in crop production, particularly in acidic and in infertile soils with low soil organic matter contents, although comparable outcomes in temperate soils are variable. We offer insight into the mechanisms underlying these findings by focusing attention on the soil nitrogen (N) cycle, specifically on hitherto unmeasured processes of organic N cycling in arable soils. We here investigated the impacts of biochar addition on soil organic and inorganic N pools and on gross transformation rates of both pools in a biochar field trial on arable land (Chernozem) in Traismauer, Lower Austria. We found that biochar increased total soil organic carbon but decreased the extractable organic C pool and soil nitrate. While gross rates of organic N transformation processes were reduced by 50–80%, gross N mineralization of organic N was not affected. In contrast, biochar promoted soil ammonia-oxidizer populations (bacterial and archaeal nitrifiers) and accelerated gross nitrification rates more than two-fold. Our findings indicate a de-coupling of the soil organic and inorganic N cycles, with a build-up of organic N, and deceleration of inorganic N release from this pool. The results therefore suggest that addition of inorganic fertilizer-N in combination with biochar could compensate for the reduction in organic N mineralization, with plants and microbes drawing on fertilizer-N for growth, in turn fuelling the belowground build-up of organic N. We conclude that combined addition of biochar with fertilizer-N may increase soil organic N in turn enhancing soil carbon sequestration and thereby could play a fundamental role in future soil management strategies.
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Affiliation(s)
- Judith Prommer
- Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Wolfgang Wanek
- Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
- * E-mail: (RCHN); (WW)
| | - Florian Hofhansl
- Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
| | - Daniela Trojan
- Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Pierre Offre
- Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Tim Urich
- Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Christa Schleper
- Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria
| | - Stefan Sassmann
- Core Facility of Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, Austria
| | - Barbara Kitzler
- Institute of Forest Ecology and Soil, Federal Research and Training Centre for Forests, Natural Hazards and Landscape, Vienna, Austria
| | - Gerhard Soja
- Department of Health and Environment, Austrian Institute of Technology, Tulln, Austria
| | - Rebecca Clare Hood-Nowotny
- Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria
- * E-mail: (RCHN); (WW)
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20
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Wild B, Schnecker J, Bárta J, Čapek P, Guggenberger G, Hofhansl F, Kaiser C, Lashchinsky N, Mikutta R, Mooshammer M, Šantrůčková H, Shibistova O, Urich T, Zimov SA, Richter A. Nitrogen dynamics in Turbic Cryosols from Siberia and Greenland. Soil Biol Biochem 2013; 67:85-93. [PMID: 24302785 PMCID: PMC3819518 DOI: 10.1016/j.soilbio.2013.08.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2013] [Revised: 08/01/2013] [Accepted: 08/03/2013] [Indexed: 05/16/2023]
Abstract
Turbic Cryosols (permafrost soils characterized by cryoturbation, i.e., by mixing of soil layers due to freezing and thawing) are widespread across the Arctic, and contain large amounts of poorly decomposed organic material buried in the subsoil. This cryoturbated organic matter exhibits retarded decomposition compared to organic material in the topsoil. Since soil organic matter (SOM) decomposition is known to be tightly linked to N availability, we investigated N transformation rates in different soil horizons of three tundra sites in north-eastern Siberia and Greenland. We measured gross rates of protein depolymerization, N mineralization (ammonification) and nitrification, as well as microbial uptake of amino acids and NH4+ using an array of 15N pool dilution approaches. We found that all sites and horizons were characterized by low N availability, as indicated by low N mineralization compared to protein depolymerization rates (with gross N mineralization accounting on average for 14% of gross protein depolymerization). The proportion of organic N mineralized was significantly higher at the Greenland than at the Siberian sites, suggesting differences in N limitation. The proportion of organic N mineralized, however, did not differ significantly between soil horizons, pointing to a similar N demand of the microbial community of each horizon. In contrast, absolute N transformation rates were significantly lower in cryoturbated than in organic horizons, with cryoturbated horizons reaching not more than 32% of the transformation rates in organic horizons. Our results thus indicate a deceleration of the entire N cycle in cryoturbated soil horizons, especially strongly reduced rates of protein depolymerization (16% of organic horizons) which is considered the rate-limiting step in soil N cycling.
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Affiliation(s)
- Birgit Wild
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Althanstrasse 14, 1090 Vienna, Austria
- Austrian Polar Research Institute, 1090 Vienna, Austria
| | - Jörg Schnecker
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Althanstrasse 14, 1090 Vienna, Austria
- Austrian Polar Research Institute, 1090 Vienna, Austria
| | - Jiří Bárta
- University of South Bohemia, Department of Ecosystems Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Petr Čapek
- University of South Bohemia, Department of Ecosystems Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Georg Guggenberger
- Leibniz Universität Hannover, Institut für Bodenkunde, Herrenhäuser Strasse 2, 30419 Hannover, Germany
| | - Florian Hofhansl
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Althanstrasse 14, 1090 Vienna, Austria
| | - Christina Kaiser
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Althanstrasse 14, 1090 Vienna, Austria
- International Institute for Applied Systems Analysis (IIASA), Schlossplatz 1, 2361 Laxenburg, Austria
| | - Nikolaj Lashchinsky
- Central Siberian Botanical Garden, Siberian Branch of Russian Academy of Sciences, St. Zolotodolinskaya 101, 630090 Novosibirsk, Russia
| | - Robert Mikutta
- Leibniz Universität Hannover, Institut für Bodenkunde, Herrenhäuser Strasse 2, 30419 Hannover, Germany
| | - Maria Mooshammer
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Althanstrasse 14, 1090 Vienna, Austria
| | - Hana Šantrůčková
- University of South Bohemia, Department of Ecosystems Biology, Branišovská 31, 37005 České Budějovice, Czech Republic
| | - Olga Shibistova
- Leibniz Universität Hannover, Institut für Bodenkunde, Herrenhäuser Strasse 2, 30419 Hannover, Germany
- VN Sukachev Institute of Forest, Siberian Branch of Russian Academy of Sciences, Akademgorodok, 660036 Krasnoyarsk, Russia
| | - Tim Urich
- Austrian Polar Research Institute, 1090 Vienna, Austria
- University of Vienna, Department of Ecogenomics and Systems Biology, Althanstrasse 14, 1090 Vienna, Austria
- University of Bergen, Department of Biology/Centre for Geobiology, Allégaten 41, 5007 Bergen, Norway
| | - Sergey A. Zimov
- Northeast Scientific Station, Pacific Institute for Geography, Far-East Branch of Russian Academy of Sciences, 678830 Chersky, Republic of Sakha, Russia
| | - Andreas Richter
- University of Vienna, Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, Althanstrasse 14, 1090 Vienna, Austria
- Austrian Polar Research Institute, 1090 Vienna, Austria
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21
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Mooshammer M, Wanek W, Schnecker J, Wild B, Leitner S, Hofhansl F, Blöchl A, Hämmerle I, Frank AH, Fuchslueger L, Keiblinger KM, Zechmeister-Boltenstern S, Richter A. Stoichiometric controls of nitrogen and phosphorus cycling in decomposing beech leaf litter. Ecology 2012; 93:770-82. [DOI: 10.1890/11-0721.1] [Citation(s) in RCA: 174] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Maria Mooshammer
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Wolfgang Wanek
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Jörg Schnecker
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Birgit Wild
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Sonja Leitner
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Florian Hofhansl
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Andreas Blöchl
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Ieda Hämmerle
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Alexander H. Frank
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Lucia Fuchslueger
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
| | - Katharina M. Keiblinger
- Institute of Soil Research, University of Natural Resources and Life Sciences, Peter-Jordan-Straße 82, 1190 Vienna, Austria
| | - Sophie Zechmeister-Boltenstern
- Institute of Soil Research, University of Natural Resources and Life Sciences, Peter-Jordan-Straße 82, 1190 Vienna, Austria
| | - Andreas Richter
- Department of Chemical Ecology and Ecosystem Research, University of Vienna, Althanstraße 14, 1090 Vienna, Austria
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