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Petrin S, Tiengo A, Longo A, Furlan M, Marafin E, Zavagnin P, Orsini M, Losasso C, Barco L. Uncommon Salmonella Infantis Variants with Incomplete Antigenic Formula in the Poultry Food Chain, Italy. Emerg Infect Dis 2024; 30:795-799. [PMID: 38526241 PMCID: PMC10977818 DOI: 10.3201/eid3004.231074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024] Open
Abstract
Uncommon Salmonella Infantis variants displaying only flagellar antigens phenotypically showed identical incomplete antigenic formula but differed by molecular serotyping. Although most formed rough colonies, all shared antimicrobial resistances and the presence of usg gene with wild-type Salmonella Infantis. Moreover, they were undistinguishable wild-type Salmonella Infantis by whole-genome sequencing.
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Affiliation(s)
| | | | - Alessandra Longo
- National and World Organisation for Animal Health Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Maddalena Furlan
- National and World Organisation for Animal Health Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Elisa Marafin
- National and World Organisation for Animal Health Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Paola Zavagnin
- National and World Organisation for Animal Health Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Massimiliano Orsini
- National and World Organisation for Animal Health Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
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Olsen JE, Frees D, Kyvsgaard NC, Barco L. Lack of correlation between growth, stress, and virulence phenotypes in strains of Salmonella enterica serovar Enteritidis, S. Typhimurium DT104, S. 4,12, b:- and S. Liverpool. Lett Appl Microbiol 2024; 77:ovae015. [PMID: 38366187 DOI: 10.1093/lambio/ovae015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 01/08/2024] [Accepted: 02/13/2024] [Indexed: 02/18/2024]
Abstract
Strains of Salmonella Enteritidis (SEnt, n = 10) and S. Typhimurium (STm, n = 11), representing clones with high impact on human health, and strains of S. 4,12: b:- (S412B n = 11) and S. Liverpool (SLiv, n = 4), representing clones with minor impact on human health were characterized for 16 growth, stress, and virulence phenotypes to investigate whether systematic differences exist in their performance in these phenotypes and whether there was correlation between performance in different phenotypes. The term serotype was not found to be predictive of a certain type of performance in any phenotype, and surprisingly, on average, strains of SEnt and STm were not significantly better in adhering to and invading cultured intestinal cells than the less pathogenic types. Forest analysis identified desiccation tolerance and the ability to grow at 42°C with high salt as the characters that separated serovars with low human health impact (S412B/SLiv) from serovars with high human health impact (SEnt/STm). The study showed that variation in phenotypes was high even within serovars and correlation between phenotypes was low, i.e. the way that a strain performed phenotypically in one of the tested conditions had a low predictive value for the performance of the strain in other conditions.
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Affiliation(s)
- John Elmerdahl Olsen
- Department of Veterinary and Animal Sciences, University of Copenhagen, 1870 Frederiksberg C., Denmark
| | - Dorte Frees
- Department of Veterinary and Animal Sciences, University of Copenhagen, 1870 Frederiksberg C., Denmark
| | - Niels Christian Kyvsgaard
- Department of Veterinary and Animal Sciences, University of Copenhagen, 1870 Frederiksberg C., Denmark
| | - Lisa Barco
- WOAH, National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, 35020, Legnaro, Padova, Italy
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Marzoli F, Bertola M, Pinarelli Fazion J, Cento G, Antonelli P, Dolzan B, Barco L, Belluco S. A systematic review on the occurrence of Salmonella in farmed Tenebrio molitor and Acheta domesticus or their derived products. Int J Food Microbiol 2024; 410:110464. [PMID: 37956634 DOI: 10.1016/j.ijfoodmicro.2023.110464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 10/11/2023] [Accepted: 10/30/2023] [Indexed: 11/15/2023]
Abstract
Insects represent a sustainable and protein-rich food source. This new supply chain requires the study and monitoring of pathogens' presence and impact, as for other farmed animals. Among pathogens, Salmonella is of interest due to the well-established possibility for insects to harbor it. Since Acheta domesticus (cricket) and Tenebrio molitor (mealworm) are the most sold and farmed insect species, the present systematic review aimed to collect, select, and evaluate, in the available scientific literature, studies investigating the occurrence of Salmonella in these species sampled. All available studies published in peer-reviewed journals in English, French, Italian, Portuguese, German, and Spanish were considered. No time limits were imposed. We searched PUBMED, EMBASE, WEB of Science Core Collection, and Food Science and Technology Abstracts. The first date searched was May 10th, 2022; an update of the search was conducted on May 5th, 2023. The data synthesis was presented in tables reporting the number of positives on the number of total analyzed samples with other relevant characteristics of the study. The quality assessment was carried out considering relevant aspects for sampling and the method of analysis for Salmonella detection. At the end of the screening process, 10 and nine studies conducted on crickets and mealworms, respectively, were included for data extraction. The S. serovar Wandsworth and S. serovar Stanley were isolated only in one sample of ready-to-eat crickets. A second study detected OTUs related to S. enterica in cricket and mealworm powders. No studies detected Salmonella in mealworms according to cultural methods. The limitations of the present review are that few studies were retrieved and that included studies had important limitations in terms of study design as sampling was mostly based on convenience and not on a sound statistical basis. The present systematic review underlines the need to obtain reliable data about Salmonella presence in insects considering the growing market and the scaling up of existing farms. This research was funded by the Italian Ministry of Health - Ricerca Corrente IZSVe 03/21. The review protocol was published on the Systematic Reviews for Animals and Food (SYREAF) Web site (https://syreaf.org/protocols/).
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Affiliation(s)
- Filippo Marzoli
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100 Vicenza, VI, Italy
| | - Michela Bertola
- WOAH and Italian National Reference Laboratory for Diseases at the Animal/Human Interface and Laboratory of Parasitology, Micology and Sanitary Entomology, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Juliane Pinarelli Fazion
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100 Vicenza, VI, Italy.
| | - Giulia Cento
- WOAH and Italian National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Pietro Antonelli
- WOAH and Italian National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Beatrice Dolzan
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100 Vicenza, VI, Italy
| | - Lisa Barco
- WOAH and Italian National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Simone Belluco
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100 Vicenza, VI, Italy
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Napoleoni M, Villa L, Barco L, Lucarelli C, Tiengo A, Baggio G, Dionisi AM, Angellotti A, Ferretti E, Ruggeri S, Staffolani M, Rocchegiani E, Silenzi V, Morandi B, Blasi G. Monophasic Variant of Salmonella Typhimurium 4,[5],12:i:- (ACSSuGmTmpSxt Type) Outbreak in Central Italy Linked to the Consumption of a Roasted Pork Product (Porchetta). Microorganisms 2023; 11:2567. [PMID: 37894225 PMCID: PMC10609469 DOI: 10.3390/microorganisms11102567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 10/10/2023] [Accepted: 10/12/2023] [Indexed: 10/29/2023] Open
Abstract
The monophasic variant of S. Typhimurium 4,[5],12:i:- (MVST) is the third most commonly reported Salmonella serovar involved in human infections (8.8%) in the EU and ranks after S. Enteritidis (54.6%) and S. Typhimurium (11.4%). In Italy, in contrast, the MVST has achieved peculiar epidemiological and ecological success which has allowed it to be, since 2011, the serovar most frequently isolated from humans. In the summer of 2022, a foodborne outbreak of the MVST involving 63 people occurred in the Marche Region (Central Italy). A common food exposure source among some human cases was a roasted, ready-to-eat (RTE) pork product, porchetta, which is a typical product of Central Italy. This paper describes the results of investigations conducted to clarify this outbreak. The porchetta was produced by a local manufacturing plant and distributed to at least two local retail stores, one of which was the retail outlet for the manufacturing plant. The MVST was isolated from surface samples collected at the porchetta manufacturing plant and at both local retail stores via bacterial analysis, and the porchetta sampled at one store contained the MVST. These data confirm this type of RTE pork product can be a source of Salmonella infection in humans.
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Affiliation(s)
- Maira Napoleoni
- Centro di Riferimento Regionale Patogeni Enterici Marche, Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Maestri del Lavoro, 7, 62029 Tolentino, Macerata, Italy; (M.S.); (E.R.); (V.S.); (G.B.)
| | - Laura Villa
- Dipartimento di Malattie Infettive, Istituto Superiore di Sanità, Viale Regina Elena, 299, 00161 Roma, Italy; (L.V.); (C.L.); (A.M.D.)
| | - Lisa Barco
- Centro di Referenza Nazionale e Laboratorio di Referenza WOAH per le Salmonellosi, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale dell’Università, 10, 35020 Legnaro, Padova, Italy; (L.B.); (A.T.); (G.B.)
| | - Claudia Lucarelli
- Dipartimento di Malattie Infettive, Istituto Superiore di Sanità, Viale Regina Elena, 299, 00161 Roma, Italy; (L.V.); (C.L.); (A.M.D.)
| | - Alessia Tiengo
- Centro di Referenza Nazionale e Laboratorio di Referenza WOAH per le Salmonellosi, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale dell’Università, 10, 35020 Legnaro, Padova, Italy; (L.B.); (A.T.); (G.B.)
| | - Giulia Baggio
- Centro di Referenza Nazionale e Laboratorio di Referenza WOAH per le Salmonellosi, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale dell’Università, 10, 35020 Legnaro, Padova, Italy; (L.B.); (A.T.); (G.B.)
| | - Anna Maria Dionisi
- Dipartimento di Malattie Infettive, Istituto Superiore di Sanità, Viale Regina Elena, 299, 00161 Roma, Italy; (L.V.); (C.L.); (A.M.D.)
| | - Antonio Angellotti
- UOC Igiene degli Alimenti di Origine Animale, Azienda Sanitaria Territoriale Fermo—Marche, Via Zeppilli, 22A, 63900 Fermo, Italy; (A.A.); (E.F.); (S.R.)
| | - Ezio Ferretti
- UOC Igiene degli Alimenti di Origine Animale, Azienda Sanitaria Territoriale Fermo—Marche, Via Zeppilli, 22A, 63900 Fermo, Italy; (A.A.); (E.F.); (S.R.)
| | - Simonetta Ruggeri
- UOC Igiene degli Alimenti di Origine Animale, Azienda Sanitaria Territoriale Fermo—Marche, Via Zeppilli, 22A, 63900 Fermo, Italy; (A.A.); (E.F.); (S.R.)
| | - Monica Staffolani
- Centro di Riferimento Regionale Patogeni Enterici Marche, Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Maestri del Lavoro, 7, 62029 Tolentino, Macerata, Italy; (M.S.); (E.R.); (V.S.); (G.B.)
| | - Elena Rocchegiani
- Centro di Riferimento Regionale Patogeni Enterici Marche, Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Maestri del Lavoro, 7, 62029 Tolentino, Macerata, Italy; (M.S.); (E.R.); (V.S.); (G.B.)
| | - Valentina Silenzi
- Centro di Riferimento Regionale Patogeni Enterici Marche, Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Maestri del Lavoro, 7, 62029 Tolentino, Macerata, Italy; (M.S.); (E.R.); (V.S.); (G.B.)
| | - Benedetto Morandi
- Laboratorio di Diagnostica Animale, Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Maestri del Lavoro, 7, 62029 Tolentino, Macerata, Italy;
| | - Giuliana Blasi
- Centro di Riferimento Regionale Patogeni Enterici Marche, Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, Via Maestri del Lavoro, 7, 62029 Tolentino, Macerata, Italy; (M.S.); (E.R.); (V.S.); (G.B.)
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Antonelli P, Peruzzo A, Mancin M, Boscolo Anzoletti A, Dall'Ara S, Orsini M, Bordin P, Arcangeli G, Zanolin B, Barco L, Losasso C. Tetrodotoxin in bivalve mollusks: An integrated study towards the comprehension of the influencing factors of a newly native phenomenon. Chemosphere 2023; 339:139682. [PMID: 37527741 DOI: 10.1016/j.chemosphere.2023.139682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 07/24/2023] [Accepted: 07/28/2023] [Indexed: 08/03/2023]
Abstract
Tetrodotoxins (TTXs) are potent neurotoxins named after the Tetraodontidae fish family. The ingestion of TTX-contaminated flesh can cause neurotoxic symptoms and can lead to death. In 2017 symptoms the European Food Safety Authority (EFSA) recognized the threat to food safety resulting from TTX exposure via food consumption and, thus, proposed a safety limit of 44 μg/kg of TTX in marine gastropods and bivalves. To date, however, TTXs have not yet been included in the list of biotoxins to be monitored within the European Union, even though, in a few cases, levels of TTX found were higher than the EFSA limit. The origin of TTX production is debated and the roles of both biotic and abiotic factors on TTX-mediated toxic events remain unclear. In order to meet these knowledge requests the present study was aimed to investigate the role of seawater temperature, pH, water conductivity, and oxygen saturation, along with the marine phytoplankton community and the bacterial community of mussels and oysters on the accumulation of TTX and analogues in the bivalves. Abiotic parameters were measured by means of a multi-parametric probe, phytoplankton community was analyzed by optic microscopy while microbial community was described by amplicon metataxonomic sequencing, TTXs concentration in the collected matrices were measured by HILIC-MS/MS. A possible role of seawater pH and temperature, among the investigated abiotic factors, in regulating the occurrence of TTXs was found. Regarding biotic variables, a possible influence of Vibrio, Shewanella and Flavobacteriaceae in the occurrence of TTXs was found. Concurrently, Prorocentrum cordatum cell numbers were correlated to the incidence of TTX in mussels. The results herein collected suggest that environmental variables play a consistent part in the occurrence of TTX in the edible bivalve habitats, and there are also indications of a potential role played by specific bacteria taxa in association with phytoplankton.
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Affiliation(s)
- Pietro Antonelli
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Arianna Peruzzo
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Marzia Mancin
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Aurora Boscolo Anzoletti
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Sonia Dall'Ara
- National Reference Laboratory for Marine Biotoxins, Fondazione Centro Ricerche Marine, Viale A. Vespucci 2, 47042, Cesenatico, FC, Italy
| | - Massimiliano Orsini
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Paola Bordin
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Giuseppe Arcangeli
- Specialistic Aquatic Animal Health Centre, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Bruno Zanolin
- Regional Environmental Protection Agency of Friuli Venezia Giulia, ARPA FVG, Via Cairoli 14, 33057, Palmanova, UD, Italy
| | - Lisa Barco
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy
| | - Carmen Losasso
- Microbial Ecology and Microorganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale Delle Venezie, PD, Viale Dell'Università 10, 35020, Legnaro, Italy.
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Petrin S, Orsini M, Massaro A, Olsen JE, Barco L, Losasso C. Phenotypic and genotypic antimicrobial resistance correlation and plasmid characterization in Salmonella spp. isolates from Italy reveal high heterogeneity among serovars. Front Public Health 2023; 11:1221351. [PMID: 37744490 PMCID: PMC10513437 DOI: 10.3389/fpubh.2023.1221351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Accepted: 08/15/2023] [Indexed: 09/26/2023] Open
Abstract
Introduction The spread of antimicrobial resistance among zoonotic pathogens such as Salmonella is a serious health threat, and mobile genetic elements (MGEs) carrying antimicrobial resistance genes favor this phenomenon. In this work, phenotypic antimicrobial resistance to commonly used antimicrobials was studied, and the antimicrobial resistance genes (ARGs) and plasmid replicons associated with the resistances were determined. Methods Eighty-eight Italian Salmonella enterica strains (n = 88), from human, animal and food sources, isolated between 2009 and 2019, were selected to represent serovars with different frequency of isolation in human cases of salmonellosis. The presence of plasmid replicons was also investigated. Results and discussion Resistances to sulphonamides (23.9%), ciprofloxacin (27.3%), ampicillin (29.5%), and tetracycline (32.9%) were the most found phenotypes. ARGs identified in the genomes correlated with the phenotypical results, with blaTEM-1B, sul1, sul2, tetA and tetB genes being frequently identified. Point mutations in gyrA and parC genes were also detected, in addition to many different aminoglycoside-modifying genes, which, however, did not cause phenotypic resistance to aminoglycosides. Many genomes presented plasmid replicons, however, only a limited number of ARGs were predicted to be located on the contigs carrying these replicons. As an expectation of this, multiple ARGs were identified on contigs with IncQ1 plasmid replicon in strains belonging to the monophasic variant of Salmonella Typhimurium. In general, high variability in ARGs and plasmid replicons content was observed among isolates, highlighting a high level of heterogeneity in Salmonella enterica. Irrespective of the serovar., many of the ARGs, especially those associated with critically and highly important antimicrobials for human medicine were located together with plasmid replicons, thus favoring their successful dissemination.
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Affiliation(s)
- Sara Petrin
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università, Legnaro, Italy
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Massimiliano Orsini
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università, Legnaro, Italy
| | - Andrea Massaro
- Applied Chemistry Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Vicenza, Italy
| | - John E. Olsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Lisa Barco
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università, Legnaro, Italy
| | - Carmen Losasso
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università, Legnaro, Italy
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Fagbamila IO, Ramon E, Lettini AA, Muhammad M, Longo A, Antonello K, Aworh MK, Kwaga JKP, Abdu PA, Umoh JU, Kabir JA, Ricci A, Barco L. Assessing the mechanisms of multi-drug resistant non-typhoidal Salmonella (NTS) serovars isolated from layer chicken farms in Nigeria. PLoS One 2023; 18:e0290754. [PMID: 37676896 PMCID: PMC10484460 DOI: 10.1371/journal.pone.0290754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 08/15/2023] [Indexed: 09/09/2023] Open
Abstract
BACKGROUND In Nigeria, there have been reports of widespread multiple antimicrobial resistance (AMR) amongst Salmonella isolated from poultry. To mitigate the impact of mortality associated with Salmonella on their farms, farmers resort to the use of antimicrobials without sound diagnostic advice. We conducted this study to describe the AMR patterns, mechanisms and genetic similarities within some Salmonella serovars isolated from different layer farms. METHOD We determine the AMR profiles of two hundred Salmonella isolates, selected based on frequency, serovar, and geographical and sample type distribution. We also assessed the mechanisms of multi-drug resistance for specific genetic determinants by using PCR protocols and gene sequence analysis. Pulsed-field gel electrophoresis (PFGE) was conducted on seven selected serovars to determine their genetic relatedness. RESULTS Of 200 isolates, 97 (48.5%) revealed various AMR profiles, with the multiple antibiotic resistance (MAR) index ranging from 0.07-0.5. Resistance to ciprofloxacin was common in all the multi-drug resistant isolates, while all the isolates were susceptible to cefotaxime, ceftazidime, and meropenem. Genotypic characterization showed the presence of resistance genes as well as mutations in the nucleotide genes with subsequent amino acid substitutions. Fifteen isolates (43%) of S. Kentucky were indistinguishable, but were isolated from four different states in Nigeria (Ogun, n = 9; Kaduna, n = 6; Plateau, n = 3, and: Bauchi, n = 2). PFGE revealed 40 pulsotype patterns (Kentucky, n = 12; Larochelle, n = 9; Virchow, n = 5; Saintpaul, n = 4; Poona, n = 3; Isangi, n = 2, and; Nigeria, n = 2). CONCLUSION This study recorded strictly related but diversely distributed Salmonella serovars with high AMR rates in poultry. We recommend strict regulation on antimicrobial use and regular monitoring of AMR trends among bacteria isolated from animals and humans to inform public policy.
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Affiliation(s)
| | - Elena Ramon
- WOAH and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Antonia A. Lettini
- WOAH and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Maryam Muhammad
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Alessandra Longo
- WOAH and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Keti Antonello
- WOAH and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Mabel K. Aworh
- Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, United States of America
| | - Jacob K. P. Kwaga
- Department of Veterinary Public Health, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Paul A. Abdu
- Department of Veterinary Medicine, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Jarleth U. Umoh
- Department of Veterinary Public Health, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Junaidu A. Kabir
- Department of Veterinary Public Health, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Antonia Ricci
- WOAH and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Lisa Barco
- WOAH and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
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Pinarelli Fazion J, Marzoli F, Pezzuto A, Bertola M, Antonelli P, Dolzan B, Barco L, Belluco S. A systematic review of experimental studies on Salmonella persistence in insects. NPJ Sci Food 2023; 7:44. [PMID: 37640696 PMCID: PMC10462725 DOI: 10.1038/s41538-023-00223-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 08/16/2023] [Indexed: 08/31/2023] Open
Abstract
The consumption of insects as food and feed has been recently suggested as a possible alternative to the rising global food need, thus it is crucial to monitor any potential food safety hazards in the insect supply chain. The aims of this systematic review were to collect, select, and evaluate studies investigating the persistence of Salmonella in insects. We searched PUBMED, EMBASE, WEB of Science Core Collection, and Food Science and Technology Abstracts. In total, 36 papers investigating the persistence of Salmonella in insects (both holometabolous and heterometabolous) were included after screening. Regarding complete metamorphosis insects, the longest Salmonella persistence was reported in Phormia regina, in which the pathogen persisted for 29 days at 5 °C. Similarly, Salmonella persisted in the feces of Alphitobius diaperinus for 28 days. The incomplete metamorphosis insect showing the longest Salmonella persistence (>10 months) was Blatella germanica. Periplaneta americana excreted Salmonella via feces for 44 days until all the insects were dead. The retrieved data on the persistence of Salmonella can be useful for further analysis by risk assessors and decision-makers involved in the safety of insect-based food, contributing to defining the sanitary requirements and risk mitigation measures along the supply chain. The review protocol is registered in PROSPERO database (CRD42022329213).
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Affiliation(s)
- Juliane Pinarelli Fazion
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100, Vicenza, Italy
| | - Filippo Marzoli
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100, Vicenza, Italy
| | - Alessandra Pezzuto
- WOAH and Italian National Reference Laboratory for Salmonella and, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020, Legnaro (PD), Italy
- Laboratory of hygiene and safety of the food chain, Istituto Zooprofilattico Sperimentale delle Venezie, Via Calvecchia 4, 30027, San Donà di Piave (VE), Italy
| | - Michela Bertola
- WOAH and Italian National Reference Laboratory for Diseases at the Animal/Human Interface and Laboratory of Parasitology, Micology and Sanitary Entomology, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020, Legnaro (PD), Italy
| | - Pietro Antonelli
- WOAH and Italian National Reference Laboratory for Salmonella and, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020, Legnaro (PD), Italy
| | - Beatrice Dolzan
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100, Vicenza, Italy
| | - Lisa Barco
- WOAH and Italian National Reference Laboratory for Salmonella and, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020, Legnaro (PD), Italy
| | - Simone Belluco
- Laboratory of Safety and Quality of the Food Chain, Istituto Zooprofilattico Sperimentale Delle Venezie, Viale Fiume 78, 36100, Vicenza, Italy.
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9
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Marotta F, Janowicz A, Romantini R, Di Marcantonio L, Di Timoteo F, Romualdi T, Zilli K, Barco L, D’Incau M, Mangone I, Cito F, Di Domenico M, Pomilio F, Ricci L, Garofolo G. Genomic and Antimicrobial Surveillance of Campylobacter Population in Italian Poultry. Foods 2023; 12:2919. [PMID: 37569189 PMCID: PMC10418777 DOI: 10.3390/foods12152919] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 07/25/2023] [Accepted: 07/28/2023] [Indexed: 08/13/2023] Open
Abstract
Campylobacter is one of the most common foodborne diseases worldwide with increasing rates of antibiotic resistance. Most cases of campylobacteriosis can be traced back to the consumption of poultry meat. Despite many efforts to reduce contamination in farms and in slaughterhouses, the persistence of this pathogen in poultry products remains a problem. This study aimed to evaluate the genetic diversity and antibiotic resistance of 542 C. jejuni and C. coli in Italian poultry, in the framework of two National Monitoring Programs. Genomes were screened for antibiotic resistance, virulence determinants and contextualized within a global collection of C. jejuni. ST2116, ST2863 and ST 832 were the most prevalent and significantly associated with Italian poultry. A worrying increase in resistance to quinolones, fluoroquinolones and tetracycline was observed in C. jejuni, while an increased occurrence of multidrug resistant (MDR) strains and strains resistant to macrolides was detected in C. coli. Low resistance rates were found for aminoglycosides. Molecular resistance determinants were consistent with the phenotypic resistance for tetracycline and quinolones. In silico analysis revealed 119 genes associated with virulence factors, with a notably higher prevalence of some genes in ST2863 genomes. This study highlights the increased resistance to macrolides and the emergence of MDR strains for C. coli, the genetic basis of AMR and the predominance of two genotypes among Campylobacter strains isolated from the Italian poultry farms.
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Affiliation(s)
- Francesca Marotta
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Anna Janowicz
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Romina Romantini
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Lisa Di Marcantonio
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Federica Di Timoteo
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Teresa Romualdi
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Katiuscia Zilli
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Lisa Barco
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, 35020 Padua, Italy;
| | - Mario D’Incau
- Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna “Bruno Ubertini”, 25124 Brescia, Italy;
| | - Iolanda Mangone
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Francesca Cito
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Marco Di Domenico
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Francesco Pomilio
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Lucilla Ricci
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
| | - Giuliano Garofolo
- National Reference Laboratory for Campylobacter, Istituto Zooprofilattico Sperimentale Teramo, Via Campo Boario 1, 64100 Teramo, Italy; (F.M.); (A.J.); (L.D.M.); (F.D.T.); (T.R.); (K.Z.); (I.M.); (F.C.); (M.D.D.); (F.P.); (L.R.); (G.G.)
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10
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Petrin S, Wijnands L, Benincà E, Mughini-Gras L, Delfgou-van Asch EHM, Villa L, Orsini M, Losasso C, Olsen JE, Barco L. Assessing phenotypic virulence of Salmonella enterica across serovars and sources. Front Microbiol 2023; 14:1184387. [PMID: 37346753 PMCID: PMC10279978 DOI: 10.3389/fmicb.2023.1184387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2023] [Accepted: 05/15/2023] [Indexed: 06/23/2023] Open
Abstract
Introduction Whole genome sequencing (WGS) is increasingly used for characterizing foodborne pathogens and it has become a standard typing technique for surveillance and research purposes. WGS data can help assessing microbial risks and defining risk mitigating strategies for foodborne pathogens, including Salmonella enterica. Methods To test the hypothesis that (combinations of) different genes can predict the probability of infection [P(inf)] given exposure to a certain pathogen strain, we determined P(inf) based on invasion potential of 87 S. enterica strains belonging to 15 serovars isolated from animals, foodstuffs and human patients, in an in vitro gastrointestinal tract (GIT) model system. These genomes were sequenced with WGS and screened for genes potentially involved in virulence. A random forest (RF) model was applied to assess whether P(inf) of a strain could be predicted based on the presence/absence of those genes. Moreover, the association between P(inf) and biofilm formation in different experimental conditions was assessed. Results and Discussion P(inf) values ranged from 6.7E-05 to 5.2E-01, showing variability both among and within serovars. P(inf) values also varied between isolation sources, but no unambiguous pattern was observed in the tested serovars. Interestingly, serovars causing the highest number of human infections did not show better ability to invade cells in the GIT model system, with strains belonging to other serovars displaying even higher infectivity. The RF model did not identify any virulence factor as significant P(inf) predictors. Significant associations of P(inf) with biofilm formation were found in all the different conditions for a limited number of serovars, indicating that the two phenotypes are governed by different mechanisms and that the ability to form biofilm does not correlate with the ability to invade epithelial cells. Other omics techniques therefore seem more promising as alternatives to identify genes associated with P(inf), and different hypotheses, such as gene expression rather than presence/absence, could be tested to explain phenotypic virulence [P(inf)].
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Affiliation(s)
- Sara Petrin
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C, Denmark
| | - Lucas Wijnands
- Centre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, Netherlands
| | - Elisa Benincà
- Centre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, Netherlands
| | - Lapo Mughini-Gras
- Centre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, Netherlands
- Institute for Risk Assessment Sciences (IRAS), Utrecht University, Utrecht, Netherlands
| | - Ellen H. M. Delfgou-van Asch
- Centre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, Netherlands
| | - Laura Villa
- Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy
| | - Massimiliano Orsini
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Carmen Losasso
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - John E. Olsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg C, Denmark
| | - Lisa Barco
- WHOA and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
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11
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Tiengo A, Orsini M, Petrin S, Losasso C, Longo A, Cento G, Ciot L, Ceruti R, Cibin V, Barco L. Whole-Genome Sequence of Salmonella enterica Serovar Bispebjerg from Turkey Reveals Its Pathogenic Potential. Microbiol Resour Announc 2023; 12:e0004323. [PMID: 37022181 DOI: 10.1128/mra.00043-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023] Open
Abstract
We report the genome sequence of a Salmonella enterica subsp. enterica serovar Bispebjerg strain that was isolated from a turkey flock in 2011. The genome analysis of the strain, a rare and multihost serovar, revealed its pathogenic potential due to antimicrobial resistance and a plethora of Salmonella pathogenicity islands and virulence factors.
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Affiliation(s)
- Alessia Tiengo
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Massimiliano Orsini
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Sara Petrin
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Carmen Losasso
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Alessandra Longo
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Giulia Cento
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Laura Ciot
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | | | - Veronica Cibin
- Epidemiology Department, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Lisa Barco
- Italian National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
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12
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Smoglica C, Barco L, Angelucci S, Orsini M, Marsilio F, Antonucci A, Di Francesco CE. Whole Genome Sequencing of Escherichia coli and Enterococcus spp. in wildlife-livestock interface: a pilot study. J Glob Antimicrob Resist 2023; 32:118-121. [PMID: 36764655 DOI: 10.1016/j.jgar.2023.01.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 11/15/2022] [Accepted: 01/26/2023] [Indexed: 02/11/2023] Open
Abstract
OBJECTIVES This pilot study provides a multidisciplinary investigation to monitor livestock-wildlife interface. Ecological data, microbiological investigations, and whole genome sequencing were used to characterize eight bacterial isolates obtained from sympatric domestic and wild ruminants in Maiella National Park (Italy) in terms of genetic patterns of antimicrobial resistance. METHODS Using selective culturing of fresh fecal samples of monitored and georeferenced populations of Apennine chamois, goats, red deer, and sheep, Escherichia coli, Enterococcus faecium, and Enterococcus faecalis isolates were isolated and subjected to minimum inhibitory concentration determination and whole genome sequencing. RESULTS The analyzed isolates showed phenotypic and genotypic resistance to tetracycline and critically important antibiotics such as linezolid and carbapenems. Virulence genes related to biofilm regulation and Shiga toxins were also detected. Furthermore, serotypes related to nosocomial infections, harbouring plasmids recognized as important mobile resistance gene transmitters, were identified. CONCLUSIONS This multidisciplinary pilot study represents a promising initial step to identify the environmental drivers and the transmission routes of antimicrobial resistance and virulence factors, providing new data on bacteria from rare and endangered species such as Apennine chamois.
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Affiliation(s)
- Camilla Smoglica
- University of Teramo, Faculty of Veterinary Medicine, Teramo, Italy.
| | - Lisa Barco
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Simone Angelucci
- University of Teramo, Faculty of Veterinary Medicine, Teramo, Italy; Maiella National Park, Sulmona, Italy
| | | | - Fulvio Marsilio
- University of Teramo, Faculty of Veterinary Medicine, Teramo, Italy
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13
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Tata A, Marzoli F, Cordovana M, Tiengo A, Zacometti C, Massaro A, Barco L, Belluco S, Piro R. A multi-center validation study on the discrimination of Legionella pneumophila sg.1, Legionella pneumophila sg. 2-15 and Legionella non- pneumophila isolates from water by FT-IR spectroscopy. Front Microbiol 2023; 14:1150942. [PMID: 37125166 PMCID: PMC10133462 DOI: 10.3389/fmicb.2023.1150942] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 03/20/2023] [Indexed: 05/02/2023] Open
Abstract
This study developed and validated a method, based on the coupling of Fourier-transform infrared spectroscopy (FT-IR) and machine learning, for the automated serotyping of Legionella pneumophila serogroup 1, Legionella pneumophila serogroups 2-15 as well as their successful discrimination from Legionella non-pneumophila. As Legionella presents significant intra- and inter-species heterogeneities, careful data validation strategies were applied to minimize late-stage performance variations of the method across a large microbial population. A total of 244 isolates were analyzed. In details, the method was validated with a multi-centric approach with isolates from Italian thermal and drinking water (n = 82) as well as with samples from German, Italian, French, and British collections (n = 162). Specifically, robustness of the method was verified over the time-span of 1 year with multiple operators and two different FT-IR instruments located in Italy and Germany. Moreover, different production procedures for the solid culture medium (in-house or commercial) and different culture conditions (with and without 2.5% CO2) were tested. The method achieved an overall accuracy of 100, 98.5, and 93.9% on the Italian test set of Legionella, an independent batch of Legionella from multiple European culture collections, and an extra set of rare Legionella non-pneumophila, respectively.
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Affiliation(s)
- Alessandra Tata
- Laboratorio di Chimica Sperimentale, Istituto Zooprofilattico Sperimentale delle Venezie, Vicenza, Italy
- *Correspondence: Alessandra Tata,
| | - Filippo Marzoli
- Department of Food Safety, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | | | - Alessia Tiengo
- OIE Italian Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Carmela Zacometti
- Laboratorio di Chimica Sperimentale, Istituto Zooprofilattico Sperimentale delle Venezie, Vicenza, Italy
| | - Andrea Massaro
- Laboratorio di Chimica Sperimentale, Istituto Zooprofilattico Sperimentale delle Venezie, Vicenza, Italy
| | - Lisa Barco
- OIE Italian Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Simone Belluco
- Department of Food Safety, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Roberto Piro
- Laboratorio di Chimica Sperimentale, Istituto Zooprofilattico Sperimentale delle Venezie, Vicenza, Italy
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14
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Salerno B, Cornaggia M, Sabatino R, Di Cesare A, Furlan M, Barco L, Orsini M, Cordioli B, Mantovani C, Bano L, Losasso C. Calves as Main Reservoir of Antibiotic Resistance Genes in Dairy Farms. Front Public Health 2022; 10:918658. [PMID: 35795698 PMCID: PMC9251204 DOI: 10.3389/fpubh.2022.918658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 05/13/2022] [Indexed: 11/13/2022] Open
Abstract
A side effect of antibiotic usage is the emergence and dissemination of antibiotic resistance genes (ARGs) within microbial communities. The spread of ARGs among pathogens has emerged as a public health concern. While the distribution of ARGs is documented on a global level, their routes of transmission have not been clarified yet; for example, it is not clear whether and to what extent the emergence of ARGs originates in farms, following the selective pressure exerted by antibiotic usage in animal husbandry, and if they can spread into the environment. Here we address this cutting edge issue by combining data regarding antimicrobial usage and quantitative data from selected ARGs (blaTEM, blaCTXM, ermB, vanA, qnrS, tetA, sul2, and mcr-1) encoding for resistance to penicillins, macrolides-lincosamides-streptogramins, glycopeptides, quinolones, tetracyclines, sulfonamides, and colistin at the farm level. Results suggest that dairy farms could be considered a hotspot of ARGs, comprising those classified as the highest risk for human health and that a correlation existed between the usage of penicillins and blaTEM abundances, meaning that, although the antibiotic administration is not exclusive, it remains a certain cause of the ARGs' selection and spread in farms. Furthermore, this study identified the role of calves as the main source of ARGs spread in dairy farms, claiming the need for targeted actions in this productive category to decrease the load of ARGs along the production chain.
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Affiliation(s)
- Barbara Salerno
- Laboratory of Microbial Ecology and Genomics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Matteo Cornaggia
- Laboratory of Clinical Diagnostics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Raffaella Sabatino
- National Research Council of Italy-Water Research Institute (CNR-IRSA), Verbania, Italy
| | - Andrea Di Cesare
- National Research Council of Italy-Water Research Institute (CNR-IRSA), Verbania, Italy
| | - Maddalena Furlan
- Laboratory of Microbial Ecology and Genomics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Lisa Barco
- Laboratory of Microbial Ecology and Genomics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Massimiliano Orsini
- Laboratory of Microbial Ecology and Genomics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Benedetta Cordioli
- Laboratory of Clinical Diagnostics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Claudio Mantovani
- National Research Council of Italy-Water Research Institute (CNR-IRSA), Verbania, Italy
- Laboratory of Science Communication, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Luca Bano
- Laboratory of Clinical Diagnostics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Carmen Losasso
- Laboratory of Microbial Ecology and Genomics, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
- *Correspondence: Carmen Losasso
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15
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Petrin S, Mancin M, Losasso C, Deotto S, Olsen JE, Barco L. Effect of pH and Salinity on the Ability of Salmonella Serotypes to Form Biofilm. Front Microbiol 2022; 13:821679. [PMID: 35464965 PMCID: PMC9021792 DOI: 10.3389/fmicb.2022.821679] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 03/17/2022] [Indexed: 11/28/2022] Open
Abstract
Salmonella is a major cause of food-borne infections in Europe, and the majority of human infections are caused by only a few serotypes, among them are Salmonella enterica subsp. enterica serotype Enteritidis (hereafter Salmonella Enteritidis), Salmonella Typhimurium, and the monophasic variant of S. Typhimurium. The reason for this is not fully understood, but could include virulence factors as well as increased ability to transfer via the external environment. Formation of biofilm is considered an adaptation strategy used by bacteria to overcome environmental stresses. In order to assess the capability of different Salmonella serotypes to produce biofilm and establish whether this is affected by pH and salinity, 88 Salmonella isolates collected from animal, food, and human sources and belonging to 15 serotypes, including those most frequently responsible for human infections, were tested. Strains were grown in tryptic soy broth (TSB), TSB with 4% NaCl pH 4.5, TSB with 10% NaCl pH 4.5, TSB with 4% NaCl pH 7, or TSB with 10% NaCl pH 7, and biofilm production was assessed after 24 h at 37°C using crystal violet staining. A linear mixed effect model was applied to compare results from the different experimental conditions. Among the tested serotypes, S. Dublin showed the greatest ability to form biofilm even at pH 4.5, which inhibited biofilm production in the other tested serotypes. Salmonella Senftenberg and the monophasic variant of S. Typhimurium showed the highest biofilm production in TSB with 10% NaCl pH 7. In general, pH had a high influence on the ability to form biofilm, and most of the tested strains were not able to produce biofilm at pH 4.5. In contrast, salinity only had a limited influence on biofilm production. In general, serotypes causing the highest number of human infections showed a limited ability to produce biofilm in the tested conditions, indicating that biofilm formation is not a crucial factor in the success of these clones.
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Affiliation(s)
- Sara Petrin
- Microbial Ecology and Microorganisms Genomics Laboratory - SCS1, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Marzia Mancin
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Carmen Losasso
- Microbial Ecology and Microorganisms Genomics Laboratory - SCS1, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
- *Correspondence: Carmen Losasso,
| | - Silvia Deotto
- Clinical Diagnostics Laboratory - SCT4, Istituto Zooprofilattico Sperimentale delle Venezie, Basaldella di Campoformido, Italy
| | - John Elmerdahl Olsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Frederiksberg, Denmark
| | - Lisa Barco
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
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16
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Salerno B, Furlan M, Sabatino R, Di Cesare A, Leati M, Volanti M, Barco L, Orsini M, Losasso C, Cibin V. Antibiotic resistance genes load in an antibiotic free organic broiler farm. Poult Sci 2022; 101:101675. [PMID: 35091251 PMCID: PMC8802853 DOI: 10.1016/j.psj.2021.101675] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Revised: 12/03/2021] [Accepted: 12/08/2021] [Indexed: 01/02/2023] Open
Affiliation(s)
- Barbara Salerno
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro 35020, Italy
| | - Maddalena Furlan
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro 35020, Italy
| | - Raffaella Sabatino
- Water Research Institute (IRSA) - MEG Molecular Ecology Group, CNR - National Research Council of Italy, Verbania 28922, Italy
| | - Andrea Di Cesare
- Water Research Institute (IRSA) - MEG Molecular Ecology Group, CNR - National Research Council of Italy, Verbania 28922, Italy
| | - Marta Leati
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro 35020, Italy
| | | | - Lisa Barco
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro 35020, Italy
| | | | - Carmen Losasso
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro 35020, Italy.
| | - Veronica Cibin
- Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro 35020, Italy
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17
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Ščerbová J, Lauková A, Losasso C, Barco L. Antimicrobial Susceptibility to Natural Substances of Campylobacter jejuni and Campylobacter coli Isolated from Italian Poultry. Foodborne Pathog Dis 2022; 19:266-271. [DOI: 10.1089/fpd.2021.0085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Affiliation(s)
- Jana Ščerbová
- Institute of Animal Physiology, Laboratory of Animal Microbiology, Centre of Biosciences of the Slovak Academy of Sciences, Košice, Slovakia
| | - Andrea Lauková
- Institute of Animal Physiology, Laboratory of Animal Microbiology, Centre of Biosciences of the Slovak Academy of Sciences, Košice, Slovakia
| | - Carmen Losasso
- Risk Analysis and Public Health Department, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Lisa Barco
- Risk Analysis and Public Health Department, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
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18
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Antonelli P, Salerno B, Bordin P, Peruzzo A, Orsini M, Arcangeli G, Barco L, Losasso C. Tetrodotoxin in live bivalve mollusks from Europe: Is it to be considered an emerging concern for food safety? Compr Rev Food Sci Food Saf 2021; 21:719-737. [PMID: 34954887 DOI: 10.1111/1541-4337.12881] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 11/29/2021] [Accepted: 11/30/2021] [Indexed: 10/19/2022]
Abstract
Tetrodotoxins (TTXs) are a group of potent neurotoxins named after the Tetraodontidae fish family (pufferfish). TTXs have been reported in several animal taxa, both terrestrial and marine. The ingestion of TTX-contaminated flesh can cause serious neurotoxic symptomatology and can eventually lead to death. Traditionally, TTXs have been associated with Asian countries, in particular with pufferfish consumption. However, they have also been reported in bivalve mollusks farmed in the Pacific area and, recently, in European seas. In Europe, different countries have reported TTXs, especially those bordering the Mediterranean Sea. As a consequence, in 2017 the European Food Safety Authority (EFSA) released an opinion with reference to TTX present in marine gastropods and bivalves, proposing a safety limit of 44 µg/kg TTXs in shellfish meat, below which no adverse effects should be observed in humans. Nevertheless, this limit has been exceeded on many occasions in European shellfish and, while for bivalves there have been no registered human intoxications, that is not the case for marine gastropods. However, TTXs have not yet been included in the list of marine biotoxins officially monitored in live bivalve mollusks within the European Union (EU). Thus, the aims of this manuscript are to discuss the increasing occurrence of TTXs in live bivalve mollusks from European sea waters, to acknowledge the still ongoing knowledge gaps that should be covered and to stimulate constructive debate on the eventuality of adopting a shared regulatory context, at least in the EU, for monitoring and managing this potential threat to food safety.
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Affiliation(s)
- Pietro Antonelli
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Barbara Salerno
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Paola Bordin
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Arianna Peruzzo
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Massimiliano Orsini
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Giuseppe Arcangeli
- Specialistic Aquatic Animal Health Centre, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Lisa Barco
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
| | - Carmen Losasso
- Microbial Ecology and Microrganisms Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università, Legnaro, Italy
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19
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Arai N, Sekizuka T, Tamamura-Andoh Y, Barco L, Hinenoya A, Yamasaki S, Iwata T, Watanabe-Yanai A, Kuroda M, Akiba M, Kusumoto M. Identification of a Recently Dominant Sublineage in Salmonella 4,[5],12:i:- Sequence Type 34 Isolated From Food Animals in Japan. Front Microbiol 2021; 12:690947. [PMID: 34276624 PMCID: PMC8281233 DOI: 10.3389/fmicb.2021.690947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 06/09/2021] [Indexed: 12/03/2022] Open
Abstract
Salmonella enterica subsp. enterica serovar Typhimurium sequence type 34 (ST34) and its monophasic variant (Salmonella 4,[5],12:i:-) are among the most frequently isolated clones from both humans and animals worldwide. Our previous study demonstrated that Salmonella Typhimurium/4,[5],12:i:- strains isolated in Japan could be classified into nine clades and that clade 9 consisted of ST34 strains. In Japan, ST34/clade 9 was first found in the 1990s and has become predominant among food animals in recent years. In the present study, we analyzed the whole genome-based phylogenetic relationships and temporal information of 214 Salmonella Typhimurium/4,[5],12:i:- ST34/clade 9 strains isolated from 1998 to 2017 in Japan. The 214 strains were classified into two sublineages: the newly identified clade 9–2 diverged from clade 9 in the early 2000s and has predominated in recent years. Clonally expanding subclades in clades 9–1 or 9–2 lacked Gifsy-1 or HP1 prophages, respectively, and some strains in these subclades acquired plasmids encoding antimicrobial resistance genes. Additional genome reduction around the fljB gene encoding the phase 2-H antigen was generated by an IS26-mediated deletion adjacent to the transposon in clade 9–2. Although most of the clade 9 strains were isolated from cattle in Japan, the clonally expanding subclades in clade 9–2 (i.e., all and 24% strains of subclades 9–2a and 9–2b, respectively) were isolated from swine. The spread of clade 9 in recent years among food animals in Japan was responsible for the emergence of multiple host-adapted sublineages involving the clonally expanding subclades generated by mobile genetic element-mediated microevolution.
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Affiliation(s)
- Nobuo Arai
- National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan.,Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan
| | - Tsuyoshi Sekizuka
- Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan
| | - Yukino Tamamura-Andoh
- National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan
| | - Lisa Barco
- Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padua, Italy
| | - Atsushi Hinenoya
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan
| | - Shinji Yamasaki
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan
| | - Taketoshi Iwata
- National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan
| | - Ayako Watanabe-Yanai
- National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan
| | - Makoto Kuroda
- Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan
| | - Masato Akiba
- National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan.,Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan
| | - Masahiro Kusumoto
- National Institute of Animal Health, National Agriculture and Food Research Organization, Ibaraki, Japan
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20
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Petrin S, Orsini M, Mastrorilli E, Longo A, Cozza D, Olsen JE, Ricci A, Losasso C, Barco L. Identification and characterization of a spreadable IncI1 plasmid harbouring a bla CTX-M-15 gene in an Italian human isolate of Salmonella serovar Napoli. Plasmid 2021; 114:102566. [PMID: 33582117 DOI: 10.1016/j.plasmid.2021.102566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 02/05/2021] [Accepted: 02/07/2021] [Indexed: 10/22/2022]
Abstract
Salmonella enterica subsp. enterica serovar Napoli (S. Napoli) ranks among the top serovars causing human infections in Italy, although not common in other European countries. Isolates are generally pan-susceptible or resistant to aminoglycosides only, however data on antimicrobial resistance genes in strains of S. Napoli are limited. Recently an isolate encoding resistance to third generation cephalosporins was reported. This study aimed to characterize plasmid-encoded cephalosporin resistance due to the blaCTX-M-15 gene in a human S. Napoli isolate in Italy, and to investigate plasmid stability over time. S. Napoli 16/174478 was confirmed to be ESBL-producing. The blaCTX-M-15 gene was shown to be located on an IncI1α plasmid of 90,272 bp (50.03 GC%) encoding for 107 coding sequences (CDS). The plasmid was successfully transferred by conjugation to an E. coli 1816 recipient strain (conjugation frequency 3.9 × 10-2 transconjugants per donor). Transconjugants were confirmed to carry the IncI1α plasmid, and to be ESBL-producing strains as well. Moreover, transconjugant colonies maintained the plasmid for up to 10 passages. The identification of S. Napoli isolates able to produce ESBLs is of great concern, as this pathogen is frequently associated with invasive infections and a higher risk of bacteraemia, and its reservoir has not yet been clearly identified.
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Affiliation(s)
- Sara Petrin
- Microbial Ecology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy
| | - Massimiliano Orsini
- Microbial Ecology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy
| | - Eleonora Mastrorilli
- Microbial Ecology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy
| | - Alessandra Longo
- Microbial Ecology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy
| | - Debora Cozza
- Istituto Zooprofilattico Sperimentale del Mezzogiorno, Via Salute 2, 80055 Portici (NA), Italy
| | - John E Olsen
- Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Stigbøjlen 4, 1870 Frederiksberg C, Denmark
| | - Antonia Ricci
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy
| | - Carmen Losasso
- Microbial Ecology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy.
| | - Lisa Barco
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro (PD), Italy
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21
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Bordin P, Dall’Ara S, Tartaglione L, Antonelli P, Calfapietra A, Varriale F, Guiatti D, Milandri A, Dell’Aversano C, Arcangeli G, Barco L. First occurrence of tetrodotoxins in bivalve mollusks from Northern Adriatic Sea (Italy). Food Control 2021. [DOI: 10.1016/j.foodcont.2020.107510] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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22
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Patuzzi I, Orsini M, Cibin V, Petrin S, Mastrorilli E, Tiengo A, Gobbo F, Catania S, Barco L, Ricci A, Losasso C. The Interplay between Campylobacter and the Caecal Microbial Community of Commercial Broiler Chickens over Time. Microorganisms 2021; 9:221. [PMID: 33499060 PMCID: PMC7911313 DOI: 10.3390/microorganisms9020221] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 01/18/2021] [Accepted: 01/20/2021] [Indexed: 12/27/2022] Open
Abstract
Campylobacter is the most frequent foodborne zoonotic bacteria worldwide, with chicken meat being overwhelmingly the most important reservoir for human infections. Control measures implemented at the farm level (i.e., biosecurity or vaccination), which have been successfully applied to limit other pathogens, such as Salmonella, have not been effective in reducing Campylobacter occurrence. Thus, new approaches are needed to fully understand the ecological interactions of Campylobacter with host animals to effectively comprehend its epidemiology. The objective of this study was to analyse longitudinally the gut microbiota composition of Campylobacter-infected and non-infected farms to identify any difference that could potentially be indicative of gut colonization by Campylobacter spp. Differences in the colonization rate and timing were observed at the farms that became positive for Campylobacter jejuni over the investigated time points, even though in positive tests, the occurrence of Campylobacter jejuni gut colonization was not observed before the second week of the life of the birds. Significant differences were observed in the abundances of specific bacterial taxa between the microbiota of individuals belonging to farms that became Campylobacter positive during the study and those who remained negative with particular reference to Bacteroidales and Clostridiales, respectively. Moreover, Campylobacter colonization dramatically influenced the microbiota richness, although to a different extent depending on the infection timing. Finally, a key role of Faecalibacterium and Lactobacillus genera on the Campylobacter microbial network was observed. Understanding the ecology of the Campylobacter interaction with host microbiota during infection could support novel approaches for broiler microbial barrier restoration. Therefore, evidence obtained through this study can be used to identify options to reduce the incidence of infection at a primary production level based on the targeted influence of the intestinal microbiota, thus helping develop new control strategies in order to mitigate the risk of human exposure to Campylobacter by chicken meat consumption.
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Affiliation(s)
- Ilaria Patuzzi
- Microbial Ecology and Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (I.P.); (M.O.); (S.P.); (E.M.)
| | - Massimiliano Orsini
- Microbial Ecology and Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (I.P.); (M.O.); (S.P.); (E.M.)
| | - Veronica Cibin
- National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (V.C.); (A.T.); (A.R.)
| | - Sara Petrin
- Microbial Ecology and Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (I.P.); (M.O.); (S.P.); (E.M.)
| | - Eleonora Mastrorilli
- Microbial Ecology and Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (I.P.); (M.O.); (S.P.); (E.M.)
| | - Alessia Tiengo
- National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (V.C.); (A.T.); (A.R.)
| | - Federica Gobbo
- Avian Pathology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (F.G.); (S.C.)
| | - Salvatore Catania
- Avian Pathology Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (F.G.); (S.C.)
| | - Lisa Barco
- Experimental Microbiology Department, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy;
| | - Antonia Ricci
- National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (V.C.); (A.T.); (A.R.)
| | - Carmen Losasso
- Microbial Ecology and Genomics Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell’Università 10, 35120 Legnaro, Italy; (I.P.); (M.O.); (S.P.); (E.M.)
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Mastrorilli E, Petrin S, Orsini M, Longo A, Cozza D, Luzzi I, Ricci A, Barco L, Losasso C. Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005-2017. BMC Genomics 2020; 21:202. [PMID: 32131727 PMCID: PMC7057659 DOI: 10.1186/s12864-020-6588-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 02/18/2020] [Indexed: 12/24/2022] Open
Abstract
BACKGROUND Salmonella enterica subsp. enterica serovar Napoli (S. Napoli) is among the top serovars causing human infections in Italy, although it is relatively uncommon in other European countries; it is mainly isolated from humans and the environment, but neither the reservoir nor its route of infection are clearly defined. This serovar is characterized by high genomic diversity, and molecular evidences revealed important similarities with typhoidal serovars. RESULTS 179 S. Napoli genomes as well as 239 genomes of typhoidal and non-typhoidal serovars were analyzed in a comparative genomic study. Phylogenetic analysis and draft genome characterization in terms of Multi Locus Sequence Typing (MLST), plasmid replicons, Salmonella Pathogenicity Islands (SPIs), antimicrobial resistance genes (ARGs), phages, biocide and metal-tolerance genes confirm the high genetic variability of S. Napoli, also revealing a within-serovar phylogenetic structure more complex than previously known. Our work also confirms genomic similarity of S. Napoli to typhoidal serovars (S. Typhi and S. Paratyphi A), with S. Napoli samples clustering primarily according to ST, each being characterized by specific genomic traits. Moreover, two major subclades of S. Napoli can be clearly identified, with ST-474 being biphyletic. All STs span among isolation sources and years of isolation, highlighting the challenge this serovar poses to define its epidemiology and evolution. Altogether, S. Napoli strains carry less SPIs and less ARGs than other non-typhoidal serovars and seldom acquire plasmids. However, we here report the second case of an extended-spectrum β-lactamases (ESBLs) producing S. Napoli strain and the first cases of multidrug resistant (MDR) S. Napoli strains, all isolated from humans. CONCLUSIONS Our results provide evidence of genomic plasticity of S. Napoli, highlighting genomic similarity with typhoidal serovars and genomic features typical of non-typhoidal serovars, supporting the possibility of survival in different niches, both enteric and non-enteric. Presence of horizontally acquired ARGs and MDR profiles rises concerns regarding possible selective pressure exerted by human environment on this pathogen.
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Affiliation(s)
- Eleonora Mastrorilli
- Istituto Zooprofilattico Sperimentale delle Venezie, Microbial Ecology Unit, Legnaro, Italy
- Present address: European Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany
| | - Sara Petrin
- Istituto Zooprofilattico Sperimentale delle Venezie, Microbial Ecology Unit, Legnaro, Italy
| | - Massimiliano Orsini
- Istituto Zooprofilattico Sperimentale delle Venezie, Microbial Ecology Unit, Legnaro, Italy.
| | - Alessandra Longo
- Istituto Zooprofilattico Sperimentale delle Venezie, Microbial Ecology Unit, Legnaro, Italy
| | - Debora Cozza
- Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, Italy
| | - Ida Luzzi
- Istituto Superiore di Sanità, Rome, Italy
| | - Antonia Ricci
- Istituto Zooprofilattico Sperimentale delle Venezie, Food Safety Department, Legnaro, Italy
| | - Lisa Barco
- Istituto Zooprofilattico Sperimentale delle Venezie, Food Safety Department, Legnaro, Italy
| | - Carmen Losasso
- Istituto Zooprofilattico Sperimentale delle Venezie, Microbial Ecology Unit, Legnaro, Italy
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24
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Longo A, Losasso C, Vitulano F, Mastrorilli E, Turchetto S, Petrin S, Mantovani C, Dalla Pozza MC, Ramon E, Conedera G, Citterio CV, Ricci A, Barco L, Lettini AA. Insight into an outbreak of Salmonella Choleraesuis var. Kunzendorf in wild boars. Vet Microbiol 2019; 238:108423. [PMID: 31648730 DOI: 10.1016/j.vetmic.2019.108423] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2019] [Revised: 09/19/2019] [Accepted: 09/19/2019] [Indexed: 10/26/2022]
Abstract
An unusual mortality of wild boars occurred in Italy from 2012 to 2015 due to Salmonella Choleraesuis infection. In order to confirm the occurrence of an outbreak of S. Choleraesuis in wild boars and to epidemically characterise the unique S. Choleraesuis biovar, a collection of isolates belonging to wild boars was investigated from the phenotypic, molecular and genomic points of view (PFGE and WGS). Moreover, the possibility of transmission to domestic pigs and humans, temporally and geographically close to the wild boar epidemic, was tested by also including in the panel isolates from infected domestic pigs and from one human case of infection. Wild boar isolates displayed a high genetic correlation, thus suggesting they are part of the same outbreak, with a common invasiveness potential. Conversely, no correlation between pig isolates and those from the other sources (wild boars and human) was found. However, the phylogenetic and PFGE analyses suggest a high degree of similarity between the human and the investigated wild boar outbreak isolates, implying the potential for the spread of Salmonella Choleraesuis among these species.
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Affiliation(s)
- Alessandra Longo
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Carmen Losasso
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy.
| | - Federica Vitulano
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Eleonora Mastrorilli
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Sara Turchetto
- SCT2 - Treviso, Belluno and Venezia - O.U. Eco-pathology, Istituto Zooprofilattico Sperimentale delle Venezie, Belluno, Italy
| | - Sara Petrin
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Claudio Mantovani
- Science Communication Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro PD, Italy
| | - Maria Cristina Dalla Pozza
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Elena Ramon
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Gabriella Conedera
- SCT4 - Friuli Venezia Giulia - Istituto Zooprofilattico Sperimentale delle Venezie, Pordenone, Italy
| | - Carlo V Citterio
- SCT2 - Treviso, Belluno and Venezia - O.U. Eco-pathology, Istituto Zooprofilattico Sperimentale delle Venezie, Belluno, Italy
| | - Antonia Ricci
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Lisa Barco
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
| | - Antonia Anna Lettini
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, PD, Italy
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Longo A, Petrin S, Mastrorilli E, Tiengo A, Lettini AA, Barco L, Ricci A, Losasso C, Cibin V. Characterizing Salmonella enterica Serovar Choleraesuis, var. Kunzendorf: A Comparative Case Study. Front Vet Sci 2019; 6:316. [PMID: 31620457 PMCID: PMC6763558 DOI: 10.3389/fvets.2019.00316] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Accepted: 09/04/2019] [Indexed: 11/15/2022] Open
Abstract
Different Salmonella serovars generally display different antigenic formulae, but there are some exceptions. For instance, the same antigenic formula, 6,7:c:1,5, is shared by Salmonella enterica serovar, Paratyphi C, Typhisuis, and Choleraesuis. Moreover, three biotypes have been described within the S. Choleraesuis serovar. A distinction among such biotypes can only be based on biochemical behaviors (biotyping) posing serious concerns when rapid characterization is required. The study of an outbreak of severe epizootic salmonellosis in wild boars occurred in Italy between 2012 and 2014 and the typing of the isolates recovered from the outbreak were used to test different approaches for serovar identification. A number of 30 S. Choleraesuis var. Kunzendorf isolates from the outbreak were typed by means of four different methods to derive serovar and biotype: (i) slide agglutination method followed by biochemical tests, (ii) suspension array xMAP® Salmonella Serotyping Assay (SSA), (iii) whole genome sequencing (WGS) and data analysis using SeqSero tool, and (iv) WGS and data analysis using Salmonella TypeFinder tool. Slide agglutination, xMAP® SSA and WGS, followed by SeqSero analysis, are methods that infer the serovars according to the White-Kauffmann-Le Minor (WKL) scheme, based exclusively on antigens. Using these methods, isolates with incomplete antigenic formulae could be misleadingly excluded from an outbreak. On the contrary, WGS followed by Salmonella TypeFinder data analysis, which predicts the serotype on the basis of Multilocus sequence typing (MLST), might be able to cluster together isolates belonging to the same outbreak irrespective of the antigenic formula. Results suggest the benefit of routine use of a combination of in silico MLST and antigenic formula analysis to solve specific ambiguous case studies for outbreak investigation purposes.
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Affiliation(s)
| | | | | | | | | | | | | | - Carmen Losasso
- World Organisation for Animal Health (OIE), National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell'Università, Legnaro, Italy
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Petrin S, Longo A, Barco L, Cortini E, Peruzzo A, Antonelli P, Ramon E, Cibin V, Lettini AA, Ricci A, Losasso C. Different Resolution Power of Multilocus Variable-Number Tandem Repeat Analysis and Whole-Genome Sequencing in the Characterization of S. 1,4,[5],12:i:- Isolates. Foodborne Pathog Dis 2019; 16:558-561. [PMID: 30916593 DOI: 10.1089/fpd.2018.2563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Salmonella enterica serovar 1,4,[5],12:i:- has emerged over the last two decades as one of the most common serovars causing human salmonellosis in Europe. It is supposed to originate from Salmonella enterica serovar Typhimurium due to antigenic and genotypic similarities between the two serovars. Due to the high level of similarity, the multilocus variable-number tandem repeat analysis (MLVA) protocol designed for Salmonella Typhimurium routine typing is commonly used also for the characterization of S. 1,4,[5],12:i. Nevertheless, the Salmonella Typhimurium-based MLVA protocol often shows poor discriminatory power for S. 1,4,[5],12:i. Indeed, only a limited number of MLVA profiles have been described for S. 1,4,[5],12:i:-. Moreover, based on the MLVA clustering, S. 1,4,[5],12:i:- is supposed to display high clonality. The aim of the present work was to assess whether the five loci of Salmonella Typhimurium investigated by MLVA are sufficiently accurate to correctly assign S. 1,4,[5],12:i:- isolates. For this purpose, 38 epidemiologically unrelated S. 1,4,[5],12:i:- were subjected to whole-genome sequencing. Isolates were selected among a collection of monophasic strains isolated in Italy from different sources over the period 2014-2016 and belonging to the five most commonly detected MLVA profiles. Results confirmed the possible clonality for S. 1,4,[5],12:i:- serovar in the light of the scarce difference observed in terms of single-nucleotide polymorphisms (SNPs) among investigated isolates. Nevertheless, unrelated isolates on the basis of the difference of SNP number were characterized as indistinguishable by MLVA profile, thus suggesting an insufficient resolution of MLVA. Hence, we can conclude that MLVA-based approach does not seem a valuable proxy to deepen into the epidemiological relationship among S. 1,4,[5],12:i:- isolates. These evidences can be useful to avoid incorrect assignment especially when surveillance data are used for outbreak investigations.
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Affiliation(s)
- Sara Petrin
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Alessandra Longo
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Lisa Barco
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Enzo Cortini
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Arianna Peruzzo
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Pietro Antonelli
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Elena Ramon
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Veronica Cibin
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Antonia Anna Lettini
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Antonia Ricci
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Carmen Losasso
- OIE and National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
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Agnoletti F, Arcangeli G, Barbanti F, Barco L, Brunetta R, Cocchi M, Conedera G, D'Este L, Drigo I, Spigaglia P, Mazzolini E. Survey, characterization and antimicrobial susceptibility of Clostridium difficile from marine bivalve shellfish of North Adriatic Sea. Int J Food Microbiol 2019; 298:74-80. [PMID: 30927688 DOI: 10.1016/j.ijfoodmicro.2019.03.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 03/05/2019] [Indexed: 01/08/2023]
Abstract
Clostridium difficile is a major cause of infectious diarrhea associated to healthcare settings. Community-acquired infections are increasingly reported in the last decade and exposure other than to symptomatic patients rather to contaminated foods or animals is feasible. Occurrence of C. difficile in shellfish raises concern because spores can survive the cooking temperatures given that shellfish is often consumed poorly cooked or raw. Aim of our study was to investigate whether shellfish represents a reservoir of C. difficile human PCR-ribotypes (RTs). 702 shellfish samples of farmed and wild bivalve mollusc species were collected over the 2015-2017 period in North Adriatic Italian Sea to investigate contamination with C. difficile and characterize the isolates in terms of genotypic variability and antimicrobial resistance profile. C. difficile was detected in 16.9% (CI: 14.1%-19.8%) samples: 11.6% mussels and 23.2% clams. Compared to mussels, clams were significantly associated with detection of C. difficile (OR = 2.4, P < 0.01). Overall 113 C. difficile isolates were genotyped and 75 (66.4%) were toxigenic. Fifty-three different RTs were identified. 40.7% C. difficile isolates were among the RTs most commonly involved in human infection in Europe. The profile of antimicrobial susceptibility was determined by E-test; microbiological resistance was frequent against clindamycin (17%), erythromycin (23%), rifampicin (8.8%) and moxifloxacin (10.6%). All isolates were susceptible to metronidazole and one showed MIC > ECOFF for vancomycin. C. difficile strains showed high variety in RTs, most of them already detected in other animals or known as highly virulent and epidemic in humans. These results prompt towards investigating on specific risk mitigation measures against C. difficile and are preliminary for any source attribution and risk assessment study.
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Affiliation(s)
- Fabrizio Agnoletti
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy.
| | - Giuseppe Arcangeli
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Fabrizio Barbanti
- Department of Infectious Diseases, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy
| | - Lisa Barco
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Romina Brunetta
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Monia Cocchi
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Gabriella Conedera
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Laura D'Este
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Ilenia Drigo
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
| | - Patrizia Spigaglia
- Department of Infectious Diseases, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161 Rome, Italy
| | - Elena Mazzolini
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, PD, Italy
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Sabbatucci M, Dionisi AM, Pezzotti P, Lucarelli C, Barco L, Mancin M, Luzzi I. Molecular and Epidemiologic Analysis of Reemergent Salmonella enterica Serovar Napoli, Italy, 2011-2015. Emerg Infect Dis 2019; 24:562-565. [PMID: 29460759 PMCID: PMC5823338 DOI: 10.3201/eid2403.171178] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Human infections with Salmonella enterica serovar Napoli are uncommon in Europe. However, these infections represented 5.9% of salmonellosis cases in Italy during 2014–2015. The source of infection is unknown. We analyzed surveillance data and compared strain genetic similarities and found that contaminated vegetables and surface water are probable sources of human infection.
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Cibin V, Busetti M, Longo A, Petrin S, Knezevich A, Ricci A, Barco L, Losasso C. Whole Genome Sequencing of Salmonella Serovar Stanleyville from Two Italian Outbreaks Resulted in Unexpected Genomic Diversity Within and Between Outbreaks. Foodborne Pathog Dis 2019; 16:307-308. [PMID: 30615488 DOI: 10.1089/fpd.2018.2564] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Veronica Cibin
- 1 National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Marina Busetti
- 2 Microbiology Unit, University Hospital of Trieste, Trieste, Italy
| | - Alessandra Longo
- 1 National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Sara Petrin
- 1 National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Anna Knezevich
- 2 Microbiology Unit, University Hospital of Trieste, Trieste, Italy
| | - Antonia Ricci
- 1 National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Lisa Barco
- 1 National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Carmen Losasso
- 1 National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
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Mancin M, Barco L, Losasso C, Belluco S, Cibin V, Mazzucato M, Bilei S, Carullo MR, Decastelli L, Di Giannatale E, D'Incau M, Goffredo E, Lollai S, Piraino C, Scuota S, Staffolani M, Tagliabue S, Ricci A. Salmonella serovar distribution from non-human sources in Italy; results from the IT-Enter-Vet network. Vet Rec 2018; 183:69. [PMID: 29980593 DOI: 10.1136/vr.104907] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Revised: 05/18/2018] [Accepted: 05/31/2018] [Indexed: 11/04/2022]
Abstract
The study summarises the results obtained over the period 2002-2013 by the Italian IT-Enter-Vet network, aimed at collecting data on Salmonella isolates from non-human sources. A total of 42,491 Salmonella isolates were reported with a progressive decrease over the years. S. Typhimurium was the most frequent serovar up to 2011, but then, it was overtaken by S. 4,[5],12,:i:-, S. Derby, S. Livingstone and S. Enteritidis alternated as the third most commonly isolated serovars. With regard to the sources of isolation, S. Typhimurium was distributed ubiquitously among the animal species. On the contrary, S. 4,[5],12,:i:- and S. Derby were strictly associated with pigs, whereas S. Livingstone, S. Enteritidis and S. Infantis were clearly related to poultry. Intriguingly, when the frequency of serovar distribution along the food chain was considered, it was evident that S. Typhimurium and S. Derby tended to persist along the chain, as they were isolated even more frequently from foods than from animals. A similar distribution was found for S. Enteritidis and S. Hadar. Despite limitations related to non-mandatory participation of laboratories in the network, the data presented are valuable to obtain a picture of the evolution of Salmonella from non-human sources over time in Italy.
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Affiliation(s)
- Marzia Mancin
- OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Lisa Barco
- OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Carmen Losasso
- OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Simone Belluco
- OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Veronica Cibin
- OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Matteo Mazzucato
- GIS Unit, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Stefano Bilei
- Istituto Zooprofilattico Sperimentale del Lazio e della Toscana, Roma, Italy
| | | | - Lucia Decastelli
- Istituto Zooprofilattico Sperimentale del Piemonte e Valle D'Aosta, Torino, Italy
| | | | - Mario D'Incau
- Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna, Brescia, Italy
| | - Elisa Goffredo
- Istituto Zooprofilattico Sperimentale della Puglia e Basilicata, Foggia, Italy
| | - Stefano Lollai
- Istituto Zooprofilattico Speimentale delle Sardegna, Sassari, Italy
| | - Chiara Piraino
- Istituto Zooprofilattico Sperimentale della Sicilia, Palermo, Italy
| | - Stefania Scuota
- Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche, Perugia, Italy
| | - Monica Staffolani
- Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche, Perugia, Italy
| | - Silvia Tagliabue
- Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna, Brescia, Italy
| | - Antonia Ricci
- OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
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Roccato A, Mancin M, Barco L, Cibin V, Antonello K, Cocola F, Ricci A. Usefulness of indicator bacteria as potential marker of Campylobacter contamination in broiler carcasses. Int J Food Microbiol 2018; 276:63-70. [DOI: 10.1016/j.ijfoodmicro.2018.04.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Revised: 02/07/2018] [Accepted: 04/02/2018] [Indexed: 11/25/2022]
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Arai N, Sekizuka T, Tamamura Y, Tanaka K, Barco L, Izumiya H, Kusumoto M, Hinenoya A, Yamasaki S, Iwata T, Watanabe A, Kuroda M, Uchida I, Akiba M. Phylogenetic Characterization of Salmonella enterica Serovar Typhimurium and Its Monophasic Variant Isolated from Food Animals in Japan Revealed Replacement of Major Epidemic Clones in the Last 4 Decades. J Clin Microbiol 2018; 56:JCM.01758-17. [PMID: 29491013 DOI: 10.1128/jcm.01758-17/suppl_file/zjm999095924sd2.xlsx] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Accepted: 02/17/2018] [Indexed: 05/27/2023] Open
Abstract
Salmonella enterica serovar Typhimurium (Salmonella Typhimurium) and its monophasic variant (Salmonella 4,[5],12:i:-) are the major causes of gastroenteritis in both humans and animals. Pulsed-field gel electrophoresis and multilocus variable-number tandem-repeat analysis have been used widely as subtyping methods for these pathogens in molecular epidemiological analyses, but the results do not precisely reflect phylogenetic information. In this study, we performed a phylogenetic analysis of these serovars using whole-genome sequencing data and identified nine distinct genotypic clades. Then, we established an allele-specific PCR-based genotyping method detecting a clade-specific single nucleotide polymorphism to rapidly identify the clade of each isolate. Among a total of 815 isolates obtained from cattle in Japan between 1977 and 2017, clades 1, 7, and 9 contained 77% of isolates. Obvious replacement of the dominant clone was observed five times in this period, and clade 9, which mostly contains Salmonella 4,[5],12:i:-, is currently dominant. Among 140 isolates obtained from swine in Japan between 1976 and 2017, clades 3 and 9 contained 64% of isolates. Clade 9 is the latest clone as is the case in cattle isolates. Clade 9 is similar to an epidemic clone from Europe, which is characterized by sequence type 34 (ST34), chromosomal Salmonella genomic island 3, and a composite transposon containing antimicrobial resistance genes. The increased prevalence of clade 9 among food animals in Japan might be a part of the pandemic of the European Salmonella 4,[5],12:i:- clone.
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Affiliation(s)
- Nobuo Arai
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Osaka, Japan
- Division of Bacterial and Parasitic Disease, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan
| | - Tsuyoshi Sekizuka
- Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan
| | - Yukino Tamamura
- Division of Bacterial and Parasitic Disease, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan
| | - Kiyoshi Tanaka
- Hokkaido Research Station, National Institute of Animal Health, Sapporo, Hokkaido, Japan
| | - Lisa Barco
- Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padua, Italy
| | - Hidemasa Izumiya
- Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan
| | - Masahiro Kusumoto
- Kyushu Research Station, National Institute of Animal Health, Kagoshima, Japan
| | - Atsushi Hinenoya
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Osaka, Japan
| | - Shinji Yamasaki
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Osaka, Japan
| | - Taketoshi Iwata
- Division of Bacterial and Parasitic Disease, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan
| | - Ayako Watanabe
- Division of Bacterial and Parasitic Disease, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan
| | - Makoto Kuroda
- Pathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan
| | - Ikuo Uchida
- Unit of Veterinary Bacteriology, Department of Pathology, School of Veterinary Medicine, Rakuno Gakuen University, Ebetsu, Hokkaido, Japan
| | - Masato Akiba
- Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Izumisano, Osaka, Japan
- Division of Bacterial and Parasitic Disease, National Institute of Animal Health, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan
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Mastrorilli E, Pietrucci D, Barco L, Ammendola S, Petrin S, Longo A, Mantovani C, Battistoni A, Ricci A, Desideri A, Losasso C. A Comparative Genomic Analysis Provides Novel Insights Into the Ecological Success of the Monophasic Salmonella Serovar 4,[5],12:i:. Front Microbiol 2018; 9:715. [PMID: 29719530 PMCID: PMC5913373 DOI: 10.3389/fmicb.2018.00715] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Accepted: 03/27/2018] [Indexed: 12/27/2022] Open
Abstract
Over the past decades, Salmonella 4,[5],12:i:- has rapidly emerged and it is isolated with high frequency in the swine food chain. Although many studies have documented the epidemiological success of this serovar, few investigations have tried to explain this phenomenon from a genetic perspective. Here a comparative whole-genome analysis of 50 epidemiologically unrelated S. 4,[5],12:i:-, isolated in Italy from 2010 to 2016 was performed, characterizing them in terms of genetic elements potentially conferring resistance, tolerance and persistence characteristics. Phylogenetic analyses indicated interesting distinctions among the investigated isolates. The most striking genetic trait characterizing the analyzed isolates is the widespread presence of heavy metals tolerance gene cassettes: most of the strains possess genes expected to confer resistance to copper and silver, whereas about half of the isolates also contain the mercury tolerance gene merA. A functional assay showed that these genes might be useful for preventing the toxic effects of metals, thus supporting the hypothesis that they can contribute to the success of S. 4,[5],12:i:- in farming environments. In addition, the analysis of the distribution of type II toxin-antitoxin families indicated that these elements are abundant in this serovar, suggesting that this is another factor that might favor its successful spread.
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Affiliation(s)
- Eleonora Mastrorilli
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | | | - Lisa Barco
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Serena Ammendola
- Department of Biology, University of Rome Tor Vergata, Rome, Italy
| | - Sara Petrin
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Alessandra Longo
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Claudio Mantovani
- Science Communication Laboratory, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | | | - Antonia Ricci
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | | | - Carmen Losasso
- Department of Food Safety, National Reference Center for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
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Fagbamila IO, Mancin M, Barco L, Ngulukun SS, Jambalang A, Ajayi OT, Sati N, Emennaa P, Ankeli PI, Kwaga J, Abdu PA, Kabir J, Umoh J, Ricci A, Muhammad M. Investigation of potential risk factors associated with Salmonella presence in commercial laying hen farms in Nigeria. Prev Vet Med 2018; 152:40-47. [PMID: 29559104 DOI: 10.1016/j.prevetmed.2018.02.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 01/23/2018] [Accepted: 02/03/2018] [Indexed: 11/17/2022]
Abstract
BACKGROUND In 2012/13, the Federal government of Nigeria approved the surveillance of salmonellae in commercial poultry farms with the aim of generating baseline data for the development of a control programme. That baseline provided an opportunity to investigate potential risk factors in commercial layer farms. METHODS Five hundred and twenty-three farms were evaluated for the presence of Salmonella. Each farmer was interviewed through a structured questionnaire. Univariate analysis identified 26 variables potentially associated with Salmonella presence on the farms, with different levels of significance. To simultaneously evaluate the effect of these variables, a multivariable logistic regression model was implemented. RESULTS Farmers that are member of the Poultry Association of Nigeria (PAN) emerged as a risk factor, as well as being farmer as exclusive occupation. The risk of Salmonella increased in farms with a combined housing system as compared to farms with a single housing system. Moreover, in terms of farm management the use of plastic egg crates had a higher risk of Salmonella presence compared to paper crates. Higher risk of contamination was also identified in farms having regular contact with animal health workers, since this could be indicative of animal health problems requiring continuous assistance. Farms with no previous outbreak of salmonellosis were associated with an increase risk, since most of the farms in this category were newly established. With regard to feeding, the use of coccidiostats and commercial feeds were associated with the spread of Salmonella. Unexpectedly, the presence of other farms at distances further than 1 km away was associated with an increase in Salmonella presence as compared to farms which were in closer proximity. Close proximity among farms could favour the application of stricter biosecurity measures. CONCLUSIONS The results of the survey can be considered a baseline for implementing effective measures aimed at reducing the Salmonella prevalence in Nigerian laying hen farms.
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Affiliation(s)
| | - Marzia Mancin
- OIE and Italian National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell'Università 12, Padova, Italy
| | - Lisa Barco
- OIE and Italian National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell'Università 12, Padova, Italy.
| | - Sati Samuel Ngulukun
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Alexander Jambalang
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Olawunmi Toyin Ajayi
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Nancy Sati
- Poultry Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Paulinus Emennaa
- Poultry Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Paul Idoko Ankeli
- Bacterial Vaccine Production Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Jakob Kwaga
- Department of Veterinary Public Health and Preventive Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Paul Ayuba Abdu
- Department of Medicine, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Junaidu Kabir
- Department of Veterinary Public Health and Preventive Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Jarlath Umoh
- Department of Veterinary Public Health and Preventive Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Antonia Ricci
- OIE and Italian National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell'Università 12, Padova, Italy
| | - Maryam Muhammad
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
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Andreoli G, Merla C, Valle CD, Corpus F, Morganti M, D'incau M, Colmegna S, Marone P, Fabbi M, Barco L, Carra E. Foodborne Salmonellosis in Italy: Characterization of Salmonella enterica Serovar Typhimurium and Monophasic Variant 4,[5],12:i- Isolated from Salami and Human Patients. J Food Prot 2017; 80:632-639. [PMID: 28291384 DOI: 10.4315/0362-028x.jfp-16-331] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Salmonella enterica serovar Typhimurium (STm) and its monophasic variant 4,[5],12:i:- (VMSTm) have been responsible for an increased number of foodborne infections in humans in Europe in recent years. The aim of this study was to investigate the origin of three foodborne salmonellosis outbreaks that occurred in Pavia Province (Lombardy region, northern Italy) in 2010. Phenotypic and genetic characteristics of the STm and VMSTm isolates from patients and from food that were recovered in the framework of the three outbreaks were evaluated through serotyping, phage typing, antimicrobial susceptibility testing, pulsed-field gel electrophoresis (PFGE), and multiple-locus variable-number tandem repeat analysis (MLVA). Salami from three artisan producers, which had all purchased meat from the same slaughterhouse, was the food source of infection in outbreak I. STm isolates were recovered from salami and patients with symptoms of gastroenteritis. These isolates had the same PFGE type and the same rare MLVA profile (3-18-9-NA-211). The same molecular profiles were found in an STm isolate from a salami, which likely was the source of another family outbreak (II). A VMSTm strain with common phenotypic and molecular profiles was isolated from three hospitalized patients and identified as the cause of another putative outbreak (III). During the following 3 years (2011 through 2013), 360 salami produced in Pavia Province were monitored for the presence of S. enterica . In 2011, no STm and VMSTm isolates were recovered from 159 salami tested. During 2012 and 2013, 13.9% of 201 tested salami harbored S. enterica , and half of the isolates were VMSTm, mainly in salami from those artisan producers involved in the previous outbreaks. These isolates were genetically variable, especially in terms of MLVA profiles. The data collected suggest that from 2012, VMSTm has replaced STm in the environments of the salami producers monitored in this study, and these data confirm the dominance of this emergent serovar along the pork supply chain.
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Affiliation(s)
- Giuseppina Andreoli
- 1 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Pavia Unit, Strada Campeggi 59/61, 27100 Pavia, Italy
| | - Cristina Merla
- 1 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Pavia Unit, Strada Campeggi 59/61, 27100 Pavia, Italy.,2 Dipartimento di Scienze del Farmaco & Drug and Food Biotechnology Center (DFB), Università degli Studi del Piemonte Orientale "Amedeo Avogadro," Largo Donegani 2, 28100 Novara, Italy
| | - Claudia Dalla Valle
- 3 Department of Microbiology and Virology, Fondazione IRCCS Policlinico San Matteo, Via Taramelli 5, 27100 Pavia, Italy.,4 Department of Clinical Biochemistry, Guglielmo da Saliceto Hospital, Via G. Taverna 49, 29121 Piacenza, Italy
| | - Francesco Corpus
- 5 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Modena Unit, Via Diena 16, 41100 Modena, Italy
| | - Marina Morganti
- 6 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Parma Unit, Via dei Mercati 13/A, 43100 Parma, Italy
| | - Mario D'incau
- 7 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Via Bianchi 9, 25124 Brescia, Italy
| | - Silvia Colmegna
- 8 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Milano Unit, Via Celoria 12, 20133 Milano, Italy; and
| | - Piero Marone
- 3 Department of Microbiology and Virology, Fondazione IRCCS Policlinico San Matteo, Via Taramelli 5, 27100 Pavia, Italy
| | - Massimo Fabbi
- 1 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Pavia Unit, Strada Campeggi 59/61, 27100 Pavia, Italy
| | - Lisa Barco
- 9 World Organization for Animal Health (OIE), National Reference Laboratory for Salmonella, Centro di Referenza Nazionale e Laboratorio OIE per le Salmonellosi, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, Padova, Italy
| | - Elena Carra
- 5 Istituto Zooprofilattico Sperimentale della Lombardia e dell' Emilia Romagna "Bruno Ubertini," Modena Unit, Via Diena 16, 41100 Modena, Italy
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Fagbamila IO, Barco L, Mancin M, Kwaga J, Ngulukun SS, Zavagnin P, Lettini AA, Lorenzetto M, Abdu PA, Kabir J, Umoh J, Ricci A, Muhammad M. Salmonella serovars and their distribution in Nigerian commercial chicken layer farms. PLoS One 2017; 12:e0173097. [PMID: 28278292 PMCID: PMC5344354 DOI: 10.1371/journal.pone.0173097] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Accepted: 02/15/2017] [Indexed: 12/16/2022] Open
Abstract
Commercial poultry farms (n° 523), located in all the six regions of Nigeria were sampled with a view to generate baseline information about the distribution of Salmonella serovars in this country. Five different matrices (litter, dust, faeces, feed and water) were collected from each visited farm. Salmonella was isolated from at least one of the five matrices in 228 farms, with a farm prevalence of 43.6% (CI95[39.7-48.3%]). Altogether, 370 of 2615 samples collected (14.1%, CI95[12.8; 15.5%]) contained Salmonella. Considering the number of positive farms and the number of positive samples, it was evident that for the majority of the sampled farms, few samples were positive for Salmonella. With regard to the matrices, there was no difference in Salmonella prevalence among the five matrices considered. Of the 370 isolates serotyped, eighty-two different serotypes were identified and Salmonella Kentucky was identified as having the highest isolation rate in all the matrices sampled (16.2%), followed by S. Poona and S. Elisabethville. S. Kentucky was distributed across the country, whereas the other less frequent serovars had a more circumscribed diffusion. This is one of few comprehensive studies on the occurrence and distribution of Salmonella in commercial chicken layer farms from all the six regions of Nigeria. The relatively high prevalence rate documented in this study may be attributed to the generally poor infrastructure and low biosecurity measures in controlling stray animals, rodents and humans. Data collected could be valuable for instituting effective intervention strategies for Salmonella control in Nigeria and also in other developing countries with a similar poultry industry structure, with the final aim of reducing Salmonella spread in animals and ultimately in humans.
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Affiliation(s)
| | - Lisa Barco
- Reference Laboratory for Salmonella, Instituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Marzia Mancin
- Reference Laboratory for Salmonella, Instituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Jacob Kwaga
- Department of Veterinary Public Health and Preventive Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Sati Samuel Ngulukun
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
| | - Paola Zavagnin
- Reference Laboratory for Salmonella, Instituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Antonia Anna Lettini
- Reference Laboratory for Salmonella, Instituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Monica Lorenzetto
- Reference Laboratory for Salmonella, Instituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Paul Ayuba Abdu
- Department of Medicine, Faculty of Veterinary Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Junaidu Kabir
- Department of Veterinary Public Health and Preventive Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Jarlath Umoh
- Department of Veterinary Public Health and Preventive Medicine, Ahmadu Bello University, Zaria, Nigeria
| | - Antonia Ricci
- Reference Laboratory for Salmonella, Instituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Maryam Muhammad
- Bacterial Research Division, National Veterinary Research Institute, Vom, Plateau State, Nigeria
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Andoh LA, Ahmed S, Olsen JE, Obiri-Danso K, Newman MJ, Opintan JA, Barco L, Dalsgaard A. Prevalence and characterization of Salmonella among humans in Ghana. Trop Med Health 2017; 45:3. [PMID: 28194090 PMCID: PMC5301370 DOI: 10.1186/s41182-017-0043-z] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 01/17/2017] [Indexed: 11/17/2022] Open
Abstract
Background Non-typhoidal Salmonella (NTS) is a public health problem worldwide and particularly in Africa with high disease burden. This study characterized Salmonella isolates from humans in Ghana to determine serovar distribution, phage types, and antimicrobial resistance. Further, the clonal relatedness among isolates was determined. Methods One hundred and thirty-seven Salmonella isolates (111 clinical and 26 public toilet) were characterized using standard serotyping, phage typing, and antimicrobial susceptibility testing methods. The molecular epidemiology of common serovars (Salmonella Typhimurium and Salmonella Enteritidis) was established by pulsed field gel electrophoresis (PFGE). Results Twenty-two serovars were identified with S. Enteritidis, S. Typhimurium, and Salmonella Derby as the most dominant. One hundred and twelve isolates showed resistance to more than one antimicrobial. Fifty-eight (n = 58/112; 54.5%) strains were multi-resistant with low resistance to cephalosporins ceftazidime (8.0%), cefotaxime (4.5%), and cefoxitin (2.7%) with synergy to clavulanic acid indicating possible ESBLs. Isolates showed high resistance to trimethoprim (66.1%), tetracycline (61.6%), ampicillin (57.1%), sulfamethoxazole (46.4%), chloramphenicol (33.9%), and ciprofloxacin (25.0%). The most common resistance pattern of multi-resistant serovars was to ampicillin, chloramphenicol, sulphonamide, and trimethoprim. S. Enteritidis (18/43) strains reacted with typing phages but did not conform to any phage type with PT14B and PT4 as predominant definitive phage types. Six S. Typhimurium strains reacted but did not conform to any recognized phage type while seven were non-typable. The predominant definitive phage types were DT1 and DT22. PFGE patterns of human S. Enteritidis were closely related to patterns of poultry isolates obtained in a previous study in Ghana. Conclusions Cephalosporin resistance is uncommon among Salmonella from humans in Ghana. Poultry may be an important source of human salmonellosis. There is an urgent need for the implementation of routine surveillance of antimicrobial use and bacterial resistance among humans in Ghana.
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Affiliation(s)
- Linda Aurelia Andoh
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigboejlen 4, 1870 Frederiksberg C, Denmark.,Department of Theoretical and Applied Biology, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Shabana Ahmed
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigboejlen 4, 1870 Frederiksberg C, Denmark
| | - John Elmerdahl Olsen
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigboejlen 4, 1870 Frederiksberg C, Denmark
| | - Kwasi Obiri-Danso
- Department of Theoretical and Applied Biology, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Mercy Jemima Newman
- Department of Microbiology, University of Ghana Medical School, Korle-Bu, Accra, Ghana
| | | | - Lisa Barco
- OIE, National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro Padova, Italy
| | - Anders Dalsgaard
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigboejlen 4, 1870 Frederiksberg C, Denmark
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Li K, Petersen G, Barco L, Hvidtfeldt K, Liu L, Dalsgaard A. Salmonella Weltevreden in integrated and non-integrated tilapia aquaculture systems in Guangdong, China. Food Microbiol 2017; 65:19-24. [PMID: 28400002 DOI: 10.1016/j.fm.2017.01.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 01/20/2017] [Accepted: 01/29/2017] [Indexed: 10/20/2022]
Abstract
Integrated tilapia-pig farming, which uses manure from pigs as fertilizers in fish pond, is a traditional and common production system practised by small-scale farmers in South-east Asia. Although such systems may be environmentally sustainable, they also pose potential food safety hazards including transmission of faecal zoonotic pathogens and accumulation of antimicrobial and other chemical residues. This study aimed to determine differences in occurrence and characteristics of Salmonella spp. isolated from tilapia-pig and non-integrated aquaculture systems in Guangdong province, China. A total of 77 samples (9 pig feed, 19 fish feed, 9 pig faeces, 20 fish mucus and 20 fish intestine) from 10 tilapia-pig ponds and 10 non-integrated ponds were analysed. Salmonella spp. was found in fish mucus (20.0%), fish intestine (40.0%) and pig faeces (11.1%) from integrated ponds, and from fish mucus (40.0%) and fish intestine (40.0%) from non-integrated ponds. S. Weltevreden (76.5%) was by far the most common serovar showing limited antimicrobial resistance. One pig faeces sample contained S. Typhimurium whereas feed samples were found free of Salmonella spp.. DNA fingerprinting by the PFGE method showed a clonal relationship of S. Weltevreden which was supported by similar antimicrobial resistance patterns (sulfamethoxazole and trimethoprim resistance) as well as most isolates harbouring a 147-kb sized plasmid. The common finding of S. Weltevreden in both tilapia production systems indicates that this serovar may have a different ecology and increased survival in aquaculture environments in comparison with other Salmonella serovars. Further in vivo studies of the ecology of S. Weltevreden in aquaculture environments are needed.
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Affiliation(s)
- Kang Li
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigbøjlen 4, DK-1870, Frederiksberg C, Denmark; Key Laboratory of Freshwater Fishery Germplasm Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai, 201306, China
| | - Gitte Petersen
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigbøjlen 4, DK-1870, Frederiksberg C, Denmark
| | - Lisa Barco
- OIE, National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy
| | - Kristian Hvidtfeldt
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigbøjlen 4, DK-1870, Frederiksberg C, Denmark
| | - Liping Liu
- Key Laboratory of Freshwater Fishery Germplasm Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai, 201306, China
| | - Anders Dalsgaard
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Stigbøjlen 4, DK-1870, Frederiksberg C, Denmark.
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Österberg J, Wingstrand A, Nygaard Jensen A, Kerouanton A, Cibin V, Barco L, Denis M, Aabo S, Bengtsson B. Antibiotic Resistance in Escherichia coli from Pigs in Organic and Conventional Farming in Four European Countries. PLoS One 2016; 11:e0157049. [PMID: 27362262 PMCID: PMC4928804 DOI: 10.1371/journal.pone.0157049] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2015] [Accepted: 05/24/2016] [Indexed: 11/17/2022] Open
Abstract
Organic pig production differs in many ways from conventional production of pigs, e.g., in antibiotic use, herd structure, feeding regimes, access to outdoor areas and space allowance per pig. This study investigated if these differences result in a lower occurrence of antibiotic resistance in organic slaughter pigs in Denmark, France, Italy and Sweden. Samples were taken from the colon content and/or faeces and minimum inhibitory concentrations (MIC) of ten antibiotics were determined in isolates of Escherichia coli. In addition, the proportion of tetracycline (TET) resistant E. coli in colon content and/or faeces from individual pigs was determined. In all four countries the percentage resistance to ampicillin, streptomycin, sulphonamides or trimethoprim was significantly lower in E. coli from organic pigs. In France and Italy, the percentage of isolates resistant to chloramphenicol, ciprofloxacin, nalidixic acid or gentamicin was also significantly lower in the E. coli from organic pigs. Resistance to cefotaxime, was not found in any country. The percentage of E. coli isolates resistant to TET as well as the proportion of TET-resistant E. coli was significantly lower in organic than in conventional pigs, except in Sweden where TET-resistance was equally low in both production types. There were also differences between countries within production type in the percentage resistance to individual antibiotics as well as the proportion of TET-resistant E. coli with lower median proportions in Sweden and Denmark compared to France and Italy. The study shows that in each of the four countries resistance in intestinal E. coli was less common in organic than in conventional pigs, but that there were also large differences in resistance between countries within each production type, indicating that both country- and production-specific factors influence the occurrence of resistance.
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Affiliation(s)
| | - Anne Wingstrand
- National Food Institute, Technical University of Denmark (DTU), Copenhagen, Denmark
| | | | - Annaelle Kerouanton
- French Agency for Food, Environment and Occupational Health Safety (ANSES), Ploufragan, France
| | - Veronica Cibin
- Istituto Zooprofilattico Sperimentale delle Venezie (IZSVe), Legnaro, Italy
| | - Lisa Barco
- Istituto Zooprofilattico Sperimentale delle Venezie (IZSVe), Legnaro, Italy
| | - Martine Denis
- French Agency for Food, Environment and Occupational Health Safety (ANSES), Ploufragan, France
| | - Sören Aabo
- National Food Institute, Technical University of Denmark (DTU), Copenhagen, Denmark
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Di Cesare A, Losasso C, Barco L, Eckert EM, Conficoni D, Sarasini G, Corno G, Ricci A. Diverse distribution of Toxin-Antitoxin II systems in Salmonella enterica serovars. Sci Rep 2016; 6:28759. [PMID: 27357537 PMCID: PMC4928088 DOI: 10.1038/srep28759] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Accepted: 06/06/2016] [Indexed: 11/09/2022] Open
Abstract
Type II Toxin-Antitoxin systems (TAs), known for their presence in virulent and antibiotic resistant bacterial strains, were recently identified in Salmonella enterica isolates. However, the relationships between the presence of TAs (ccdAB and vapBC) and the epidemiological and genetic features of different non-typhoidal Salmonella serovars are largely unknown, reducing our understanding of the ecological success of different serovars. Salmonella enterica isolates from different sources, belonging to different serovars and epidemiologically unrelated according to ERIC profiles, were investigated for the presence of type II TAs, plasmid content, and antibiotic resistance. The results showed the ubiquitous presence of the vapBC gene in all the investigated Salmonella isolates, but a diverse distribution of ccdAB, which was detected in the most widespread Salmonella serovars, only. Analysis of the plasmid toxin ccdB translated sequence of four selected Salmonella isolates showed the presence of the amino acid substitution R99W, known to impede in vitro the lethal effect of CcdB toxin in the absence of its cognate antitoxin CcdA. These findings suggest a direct role of the TAs in promoting adaptability and persistence of the most prevalent Salmonella serovars, thus implying a wider eco-physiological role for these type II TAs.
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Affiliation(s)
- Andrea Di Cesare
- Microbial Ecology Group, National Research Council – Institute of Ecosystem Study (CNR-ISE), Largo Tonolli 50,28822, Verbania, Italy
| | - Carmen Losasso
- Food Safety Department, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell’Università 10, 35020, Legnaro, Italy
| | - Lisa Barco
- Food Safety Department, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell’Università 10, 35020, Legnaro, Italy
| | - Ester M. Eckert
- Microbial Ecology Group, National Research Council – Institute of Ecosystem Study (CNR-ISE), Largo Tonolli 50,28822, Verbania, Italy
| | - Daniele Conficoni
- Department Animal Medicine, Production and Health, University of Padua, viale dell’Università, 35020, Legnaro, Italy
| | - Giulia Sarasini
- Microbial Ecology Group, National Research Council – Institute of Ecosystem Study (CNR-ISE), Largo Tonolli 50,28822, Verbania, Italy
| | - Gianluca Corno
- Microbial Ecology Group, National Research Council – Institute of Ecosystem Study (CNR-ISE), Largo Tonolli 50,28822, Verbania, Italy
| | - Antonia Ricci
- Food Safety Department, Istituto Zooprofilattico Sperimentale delle Venezie, viale dell’Università 10, 35020, Legnaro, Italy
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41
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Lettini AA, Vo Than T, Marafin E, Longo A, Antonello K, Zavagnin P, Barco L, Mancin M, Cibin V, Morini M, Dang Thi Sao M, Nguyen Thi T, Pham Trung H, Le L, Nguyen Duc T, Ricci A. Distribution of Salmonella Serovars and Antimicrobial Susceptibility from Poultry and Swine Farms in Central Vietnam. Zoonoses Public Health 2016; 63:569-576. [PMID: 26952244 DOI: 10.1111/zph.12265] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2015] [Indexed: 11/29/2022]
Abstract
This study was conducted to estimate the prevalence of Salmonella spp. and their antimicrobial susceptibilities on poultry and swine farms, sampled in 2 regions in Central Vietnam. A total of 67 poultry farms and 46 swine farms were sampled in a period of 5 months (from September 2012 to January 2013). Salmonella spp. was prevalent in 46.3% and 71.7% of poultry and swine farms, respectively. Altogether, 99 non-typhoidal Salmonella were isolated and the most common serovars were Salmonella Weltevreden (19%), followed by Salmonella Typhimurium (12%) and Salmonella 4,[5],12:i:- (11%). Overall, 71 of 99 (72%) Salmonella isolates were resistant to at least one of the 14 antimicrobial agents tested. Both in poultry and swine farms, high levels of resistance were observed for ampicillin, chloramphenicol, ciprofloxacin, sulphamethoxazole and tetracycline. The presence of Salmonella isolates from poultry and swine farms which were resistant to different classes of antimicrobials suggests that alternative control measures to antimicrobials should be implemented. Moreover, an effective policy should be promoted to encourage a prudent use of these agents in animal farming in Vietnam.
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Affiliation(s)
- A A Lettini
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - T Vo Than
- Central of Vietnam Veterinary Institute, Nha Trang, Vietnam
| | - E Marafin
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - A Longo
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - K Antonello
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - P Zavagnin
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - L Barco
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - M Mancin
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - V Cibin
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy
| | - M Morini
- International Cooperation Office, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro (PD), Italy
| | - M Dang Thi Sao
- Central of Vietnam Veterinary Institute, Nha Trang, Vietnam
| | - T Nguyen Thi
- Central of Vietnam Veterinary Institute, Nha Trang, Vietnam
| | - H Pham Trung
- Central of Vietnam Veterinary Institute, Nha Trang, Vietnam
| | - L Le
- Central of Vietnam Veterinary Institute, Nha Trang, Vietnam
| | - T Nguyen Duc
- Central of Vietnam Veterinary Institute, Nha Trang, Vietnam
| | - A Ricci
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro (PD), Italy.
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Belluco S, Barco L, Roccato A, Ricci A. Escherichia coli and E nterobacteriaceae counts on poultry carcasses along the slaughterline: A systematic review and meta-analysis. Food Control 2016. [DOI: 10.1016/j.foodcont.2015.07.033] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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43
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De Cesare A, Krishnamani K, Parisi A, Ricci A, Luzzi I, Barco L, Lucchi A, Miccolupo A, Manfreda G. Comparison between Salmonella enterica Serotype Enteritidis Genotyping Methods and Phage Type. J Clin Microbiol 2015; 53:3021-31. [PMID: 26135859 PMCID: PMC4540901 DOI: 10.1128/jcm.01122-15] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Accepted: 06/21/2015] [Indexed: 11/20/2022] Open
Abstract
A quantitative comparison between discriminatory indexes and concordance among multilocus variable-number tandem-repeat analysis (MLVA), pulsed-field gel electrophoresis (PFGE), automated ribotyping, and phage typing has been performed, testing 238 Salmonella enterica serotype Enteritidis isolates not epidemiologically correlated. The results show that MLVA is the best choice, but each typing method provides a piece of information for establishing clonal relationships between the isolates.
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Affiliation(s)
| | | | - Antonio Parisi
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Putignano, Bari, Italy
| | - Antonia Ricci
- OIE/National Reference Laboratory for Salmonella-Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Ida Luzzi
- Istituto Superiore di Sanità, Rome, Italy
| | - Lisa Barco
- OIE/National Reference Laboratory for Salmonella-Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy
| | - Alex Lucchi
- Department of Agricultural and Food Sciences, Ozzano dell'Emilia, Italy
| | - Angela Miccolupo
- Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata, Putignano, Bari, Italy
| | - Gerardo Manfreda
- Department of Agricultural and Food Sciences, Ozzano dell'Emilia, Italy
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44
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Belluco S, Barco L, Roccato A, Ricci A. Variability of Escherichia coli and Enterobacteriaceae counts on pig carcasses: A systematic review. Food Control 2015. [DOI: 10.1016/j.foodcont.2015.02.042] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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45
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Barco L, Belluco S, Roccato A, Ricci A. A systematic review of studies on Escherichia coli and Enterobacteriaceae on beef carcasses at the slaughterhouse. Int J Food Microbiol 2015; 207:30-9. [DOI: 10.1016/j.ijfoodmicro.2015.04.027] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2014] [Revised: 01/31/2015] [Accepted: 04/18/2015] [Indexed: 01/06/2023]
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Abstract
This study investigated the occurrence, serovar and antimicrobial resistance of Salmonella spp. in shrimp samples from intensive and extensive farms located in three different provinces in the Mekong Delta, Vietnam. Shrimp from 11 of the 48 farms all contained S. Weltevreden, except for one farm yielding S. Agona, with no difference in Salmonella occurrence between the two production systems. Pulsed field gel electrophoresis (PFGE) of S. Weltevreden showed closely related XbaI pulse types, suggesting a clonal relationship despite the farms and shrimp samples being epidemiologically unrelated. S. Weltevreden was susceptible to most antimicrobials tested, with a few strains being resistant to florfenicol, chloramphenicol, sulfamethoxazole or trimethoprim. Future studies of the ecology of S. Weltevreden should establish if this serovar may survive better and even multiply in warm-water shrimp farm environments compared to other Salmonella serovars.
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Affiliation(s)
- Gazi Md. Noor Uddin
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Marianne Halberg Larsen
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Lisa Barco
- World Organization for Animal Health (OIE), National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro (Padua), Italy
| | - Tran Minh Phu
- College of Aquaculture & Fisheries, Can Tho University, Can Tho City, Vietnam
| | - Anders Dalsgaard
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
- * E-mail:
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47
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Proroga YTR, Capuano F, Carullo MR, La Tela I, Capparelli R, Barco L, Pasquale V. Occurrence and antimicrobial resistance of Salmonella strains from food of animal origin in southern Italy. Folia Microbiol (Praha) 2015; 61:21-7. [PMID: 26084745 DOI: 10.1007/s12223-015-0407-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 06/08/2015] [Indexed: 11/24/2022]
Abstract
Six hundred fourteen strains of Salmonella enterica were isolated from 16,926 samples of food of animal origin collected in southern Italy from 2003 to 2012. The isolates were identified, serotyped, and challenged against 15 antibiotics according to the protocol defined at national level for veterinary isolates of Salmonella (EnterVet surveillance network). Salmonella serotypes Typhimurium, Hadar, Enteritidis, Derby, and 4,[5],12:i:- were those most frequently isolated. The widest resistances were recorded towards sulfonamides (69 % of the isolates), trimethoprim-sulfamethoxazole (52 % of the isolates), and tetracycline (51 % of the isolates). The rate of multidrug resistance of the isolates decreased significantly from the first 5 years of the study period (82.6 %) to the last 5 years (54.3 %).
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Affiliation(s)
- Yolande T R Proroga
- Department of Food Microbiology - Centro Pilota Tipizzazione Salmonella, Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, Naples, Italy
| | - Federico Capuano
- Department of Food Microbiology - Centro Pilota Tipizzazione Salmonella, Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, Naples, Italy.
| | - Maria Rosaria Carullo
- Department of Food Microbiology - Centro Pilota Tipizzazione Salmonella, Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, Naples, Italy
| | - Immacolata La Tela
- Department of Food Microbiology - Centro Pilota Tipizzazione Salmonella, Istituto Zooprofilattico Sperimentale del Mezzogiorno, Portici, Naples, Italy
| | - Rosanna Capparelli
- Department DiSSPAPA, University of Naples "Federico II", Portici, Naples, Italy
| | - Lisa Barco
- National Reference Laboratory for Salmonellosis, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Padova, Italy
| | - Vincenzo Pasquale
- Department of Science and Technology, University of Naples "Parthenope", Naples, Italy
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Barco L, Barrucci F, Cortini E, Ramon E, Olsen JE, Luzzi I, Lettini AA, Ricci A. Ascertaining the relationship between Salmonella Typhimurium and Salmonella 4,[5],12:i:- by MLVA and inferring the sources of human salmonellosis due to the two serovars in Italy. Front Microbiol 2015; 6:301. [PMID: 25983720 PMCID: PMC4415582 DOI: 10.3389/fmicb.2015.00301] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2015] [Accepted: 03/26/2015] [Indexed: 11/22/2022] Open
Abstract
The current picture of human salmonellosis shows Salmonella Typhimurium and S. 4,[5],12:i:- as the most common serovars in Italy. The aims of this study were to investigate the genetic relationship between these serovars, as well as to test the possibility of inferring sources of human salmonellosis due to S. Typhimurium and S. 4,[5],12:i:- by using multilocus variable-number tandem repeat analysis (MLVA) subtyping data. Single isolates from 268 human sporadic cases and 325 veterinary isolates (from pig, cattle, chicken, and turkey) collected over the period 2009-2011 were typed by MLVA, and the similarities of MLVA profiles were investigated using different analytical approaches. Results showed that isolates of S. 4,[5],12:i:- were more clonal compared to S. Typhimurium and that clones of both serovars from different non-human sources were very close to those which were responsible for human infections, suggesting that source attribution by MLVA typing should be possible. However, using the Asymmetric Island Model it was not possible to obtain a confident ranking of sources responsible for human infections based on MLVA profiles. The source assignments provided by the model could have been jeopardized by the high heterogeneity found within each source and the negligible divergence between sources as well as by the limited source data available, especially for some species.
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Affiliation(s)
- Lisa Barco
- Food Safety Department, OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, LegnaroItaly
| | - Federica Barrucci
- Food Safety Department, OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, LegnaroItaly
| | - Enzo Cortini
- Food Safety Department, OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, LegnaroItaly
| | - Elena Ramon
- Food Safety Department, OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, LegnaroItaly
| | - John E. Olsen
- Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, CopenhagenDenmark
| | - Ida Luzzi
- Department of Infectious, Parasitic and Immune-Mediated Diseases, Istituto Superiore di Sanità, RomeItaly
| | - Antonia A. Lettini
- Food Safety Department, OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, LegnaroItaly
| | - Antonia Ricci
- Food Safety Department, OIE and National Reference Laboratory for Salmonella, Istituto Zooprofilattico Sperimentale delle Venezie, LegnaroItaly
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49
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Lettini AA, Saccardin C, Ramon E, Longo A, Cortini E, Dalla Pozza MC, Barco L, Guerra B, Luzzi I, Ricci A. Characterization of an unusual Salmonella phage type DT7a and report of a foodborne outbreak of salmonellosis. Int J Food Microbiol 2014; 189:11-7. [PMID: 25108760 DOI: 10.1016/j.ijfoodmicro.2014.07.021] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Revised: 06/21/2014] [Accepted: 07/19/2014] [Indexed: 10/25/2022]
Abstract
Salmonella enterica subsp. enterica serovar 4,[5],12,i:- is a monophasic variant of Salmonella Typhimurium and its occurrence has markedly increased in several European countries in the last ten years. In June 2011, an outbreak of Salmonella 4,[5],12,i:- was reported among attendees of a wedding reception in the North-East of Italy. The source of this outbreak was identified as a cooked pork product served during the wedding reception. All Salmonella isolates from humans and the contaminated pork products were identified as Salmonella 4,[5],12,i:- and phage typed as DT7a. Afterwards, the farm where the pigs were raised was identified and sampled, and Salmonella Typhimurium was isolated from swine fecal samples. Despite the difference in serovar, these Salmonella Typhimurium isolates were also phage typed as DT7a. In the present study, Salmonella isolates from animals, humans and pork products during the outbreak investigation were subtyped by pulsed-field gel electrophoresis (PFGE), Multiple-Locus Variable number tandem repeats Analysis (MLVA), and resistance patterns, aiming to identify the most suitable subtyping methods to characterize isolates associated with this outbreak. In addition, a collection of epidemiologically unrelated strains of Salmonella 4,[5],12,i:- and Salmonella Typhimurium sharing the same phage type (DT7a) was similarly characterized in order to investigate their genetic relationship. This study provides a first snapshot of a rare Salmonella phage type, DT7a, associated with both Salmonella 4,[5],12,i:- and Salmonella Typhimurium. Moreover, the study demonstrated that in this specific context MLVA could be a reliable tool to support outbreak investigations as well as to assess the genetic relatedness among Salmonella isolates.
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Affiliation(s)
- A A Lettini
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - C Saccardin
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - E Ramon
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - A Longo
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - E Cortini
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - M C Dalla Pozza
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - L Barco
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy
| | - B Guerra
- Federal Institute for Risk Assessment, Department of Biological Safety, Max-Dohrn-Str. 8-10, D - 10589 Berlin, Germany
| | - I Luzzi
- Istituto Superiore di Sanità, Department of Infectious, Parasitic and Immunomediated Diseases, Rome, Italy
| | - A Ricci
- Istituto Zooprofilattico Sperimentale delle Venezie, National Reference Laboratory for Salmonellosis, Legnaro, PD, Italy.
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50
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Barco L, Longo A, Lettini AA, Cortini E, Saccardin C, Minorello C, Olsen JE, Ricci A. Molecular characterization of "inconsistent" variants of Salmonella Typhimurium isolated in Italy. Foodborne Pathog Dis 2014; 11:497-9. [PMID: 24666380 DOI: 10.1089/fpd.2013.1714] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
Abstract
Salmonella 4,[5],12:i:- is a variant of Salmonella Typhimurium, which lacks the expression of phase-2 flagellar antigen, generally associated with the deletion of the fljB gene. Additional mechanisms involving the fljAB operon ( fljA, fljB, and hin genes) lead to the lack of expression of phase-2 flagellar antigens also in Salmonella strains harboring the fljB gene. For 20 S. 4,[5],12:i:- strains, defined as "inconsistent" Salmonella Typhimurium variants since they had phenotypically behaved as monophasic, even though the fljB gene was conserved, the fljAB operon was characterized in order to explain the ineffective expression of the phase-2 flagellar antigen. The monophasic phenotype for a first group of strains (9) was likely due to the absence of the hin gene, leading to the inhibited switch between the expression of phase-1 and phase-2 flagellar genes. For a second group of strains (5), the monophasic phenotype could be attributed to nonconservative point mutations identified in fljA and hin genes, which could hamper the proper expression of invertase gene and the fljA, acting as repressor of the phase-1 flagellar gene. Finally, for a last group of inconsistent strains (6), a plausible reason for their monophasic phenotype was not found, since the genes involved in the expression of phase-2 flagellar antigen were fully conserved. Moreover, the collection of inconsistent Salmonella Typhimurium isolates investigated were characterized by distinct molecular profiles, as demonstrated by multiple-locus variable-number tandem repeat analysis, and phenotype variability, as demonstrated by phage-typing. This study highlights the usefulness of investigating the entire fljAB operon when a definitive identification of the monophasic or biphasic status of Salmonella Typhimurium strains is needed (for instance, in the context of epidemiological investigations aimed to identify the relatedness among strains).
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Affiliation(s)
- Lisa Barco
- 1 World Organization for Animal Health (OIE), National Reference Laboratory for Salmonella , Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro (Padova), Italy
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