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Romero JM, Serrano-Bueno G, Camacho-Fernández C, Vicente MH, Ruiz MT, Pérez-Castiñeira JR, Pérez-Hormaeche J, Nogueira FTS, Valverde F. CONSTANS, a HUB for all seasons: How photoperiod pervades plant physiology regulatory circuits. Plant Cell 2024:koae090. [PMID: 38513610 DOI: 10.1093/plcell/koae090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 02/07/2024] [Accepted: 02/28/2024] [Indexed: 03/23/2024]
Abstract
How does a plant detect the changing seasons and make important developmental decisions accordingly? How do they incorporate daylength information into their routine physiological processes? Photoperiodism, or the capacity to measure the daylength, is a crucial aspect of plant development that helps plants determine the best time of the year to make vital decisions, such as flowering. The protein CONSTANS (CO) constitutes the central regulator of this sensing mechanism, not only activating florigen production in the leaves but also participating in many physiological aspects in which seasonality is important. Recent discoveries place CO in the center of a gene network that can determine the length of the day and confer seasonal input to aspects of plant development and physiology as important as senescence, seed size, or circadian rhythms. In this review, we discuss the importance of CO protein structure, function, and evolutionary mechanisms that embryophytes have developed to incorporate annual information into their physiology.
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Affiliation(s)
- Jose M Romero
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
- Department of Plant Biochemistry and Molecular Biology, Universidad de Sevilla, Seville, Spain
| | - Gloria Serrano-Bueno
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
- Department of Plant Biochemistry and Molecular Biology, Universidad de Sevilla, Seville, Spain
| | - Carolina Camacho-Fernández
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
- Department of Plant Biochemistry and Molecular Biology, Universidad de Sevilla, Seville, Spain
- Universidad Politécnica de Valencia, Valencia, Spain
| | - Mateus Henrique Vicente
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
- Laboratory of Molecular Genetics of Plant Development, Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - M Teresa Ruiz
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
| | - J Román Pérez-Castiñeira
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
- Department of Plant Biochemistry and Molecular Biology, Universidad de Sevilla, Seville, Spain
| | - Javier Pérez-Hormaeche
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
| | - Fabio T S Nogueira
- Laboratory of Molecular Genetics of Plant Development, Escola Superior de Agricultura "Luiz de Queiroz" (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - Federico Valverde
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
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2
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Nogueira FTS, Goretti D, Valverde F. Editorial: CONSTANS - signal integration and development throughout the plant kingdom. Front Plant Sci 2024; 15:1375876. [PMID: 38444532 PMCID: PMC10913081 DOI: 10.3389/fpls.2024.1375876] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 02/12/2024] [Indexed: 03/07/2024]
Affiliation(s)
- Fabio T. S. Nogueira
- Laboratory of Molecular Genetics of Plant Development, Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - Daniela Goretti
- Faculty of Science and Technology, Department of Plant Physiology, Umeå Plant Science Centre (UPSC), Umeå University, Umeå, Sweden
| | - Federico Valverde
- Plant Development Group - Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, Seville, Spain
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3
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Park HJ, Gámez-Arjona FM, Lindahl M, Aman R, Villalta I, Cha JY, Carranco R, Lim CJ, García E, Bressan RA, Lee SY, Valverde F, Sánchez-Rodríguez C, Pardo JM, Kim WY, Quintero FJ, Yun DJ. S-acylated and nucleus-localized SALT OVERLY SENSITIVE3/CALCINEURIN B-LIKE4 stabilizes GIGANTEA to regulate Arabidopsis flowering time under salt stress. Plant Cell 2023; 35:298-317. [PMID: 36135824 PMCID: PMC9806564 DOI: 10.1093/plcell/koac289] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Accepted: 09/16/2022] [Indexed: 05/15/2023]
Abstract
The precise timing of flowering in adverse environments is critical for plants to secure reproductive success. We report a mechanism in Arabidopsis (Arabidopsis thaliana) controlling the time of flowering by which the S-acylation-dependent nuclear import of the protein SALT OVERLY SENSITIVE3/CALCINEURIN B-LIKE4 (SOS3/CBL4), a Ca2+-signaling intermediary in the plant response to salinity, results in the selective stabilization of the flowering time regulator GIGANTEA inside the nucleus under salt stress, while degradation of GIGANTEA in the cytosol releases the protein kinase SOS2 to achieve salt tolerance. S-acylation of SOS3 was critical for its nuclear localization and the promotion of flowering, but partly dispensable for salt tolerance. SOS3 interacted with the photoperiodic flowering components GIGANTEA and FLAVIN-BINDING, KELCH REPEAT, F-BOX1 and participated in the transcriptional complex that regulates CONSTANS to sustain the transcription of CO and FLOWERING LOCUS T under salinity. Thus, the SOS3 protein acts as a Ca2+- and S-acylation-dependent versatile regulator that fine-tunes flowering time in a saline environment through the shared spatial separation and selective stabilization of GIGANTEA, thereby connecting two signaling networks to co-regulate the stress response and the time of flowering.
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Affiliation(s)
| | | | - Marika Lindahl
- Institute of Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Cientificas and Universidad de Sevilla, Seville 41092, Spain
| | - Rashid Aman
- Division of Applied Life Science (BK21plus Program), Research Institute of Life Sciences, Plant Molecular Biology and Biotechnology Research Center, Graduate School of Gyeongsang National University, Jinju 52828, South Korea
| | - Irene Villalta
- Institut de Recherche sur la Biologie de l’Insecte, Université de Tours, 37200 Tours, France
| | - Joon-Yung Cha
- Division of Applied Life Science (BK21plus Program), Research Institute of Life Sciences, Plant Molecular Biology and Biotechnology Research Center, Graduate School of Gyeongsang National University, Jinju 52828, South Korea
| | - Raul Carranco
- Institute of Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Cientificas and Universidad de Sevilla, Seville 41092, Spain
| | - Chae Jin Lim
- Department of Biomedical Science and Engineering, Konkuk University, Seoul 05029, South Korea
| | - Elena García
- Institute of Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Cientificas and Universidad de Sevilla, Seville 41092, Spain
| | - Ray A Bressan
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907, USA
| | - Sang Yeol Lee
- Division of Applied Life Science (BK21plus Program), Research Institute of Life Sciences, Plant Molecular Biology and Biotechnology Research Center, Graduate School of Gyeongsang National University, Jinju 52828, South Korea
| | - Federico Valverde
- Institute of Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Cientificas and Universidad de Sevilla, Seville 41092, Spain
| | | | - Jose M Pardo
- Institute of Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Cientificas and Universidad de Sevilla, Seville 41092, Spain
| | - Woe-Yeon Kim
- Author for correspondence: (D.-J.Y.); (F.J.Q.); (W.-Y.K.)
| | | | - Dae-Jin Yun
- Author for correspondence: (D.-J.Y.); (F.J.Q.); (W.-Y.K.)
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4
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Álvarez-Urdiola R, Borràs E, Valverde F, Matus JT, Sabidó E, Riechmann JL. Peptidomics Methods Applied to the Study of Flower Development. Methods Mol Biol 2023; 2686:509-536. [PMID: 37540375 DOI: 10.1007/978-1-0716-3299-4_24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
Abstract
Understanding the global and dynamic nature of plant developmental processes requires not only the study of the transcriptome, but also of the proteome, including its largely uncharacterized peptidome fraction. Recent advances in proteomics and high-throughput analyses of translating RNAs (ribosome profiling) have begun to address this issue, evidencing the existence of novel, uncharacterized, and possibly functional peptides. To validate the accumulation in tissues of sORF-encoded polypeptides (SEPs), the basic setup of proteomic analyses (i.e., LC-MS/MS) can be followed. However, the detection of peptides that are small (up to ~100 aa, 6-7 kDa) and novel (i.e., not annotated in reference databases) presents specific challenges that need to be addressed both experimentally and with computational biology resources. Several methods have been developed in recent years to isolate and identify peptides from plant tissues. In this chapter, we outline two different peptide extraction protocols and the subsequent peptide identification by mass spectrometry using the database search or the de novo identification methods.
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Affiliation(s)
- Raquel Álvarez-Urdiola
- Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Edifici CRAG, Campus UAB, Cerdanyola del Vallès, Barcelona, Spain
| | - Eva Borràs
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain
- Universitat Pompeu Fabra, Barcelona, Spain
| | - Federico Valverde
- Institute for Plant Biochemistry and Photosynthesis CSIC - University of Seville, Seville, Spain
| | - José Tomás Matus
- Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Edifici CRAG, Campus UAB, Cerdanyola del Vallès, Barcelona, Spain
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Valencia, Spain
| | - Eduard Sabidó
- Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Barcelona, Spain
- Universitat Pompeu Fabra, Barcelona, Spain
| | - José Luis Riechmann
- Centre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, Edifici CRAG, Campus UAB, Cerdanyola del Vallès, Barcelona, Spain.
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
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5
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Serrano-Bueno G, de Los Reyes P, Chini A, Ferreras-Garrucho G, Sánchez de Medina-Hernández V, Boter M, Solano R, Valverde F. Regulation of floral senescence in Arabidopsis by coordinated action of CONSTANS and jasmonate signaling. Mol Plant 2022; 15:1710-1724. [PMID: 36153646 DOI: 10.1016/j.molp.2022.09.017] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 09/08/2022] [Accepted: 09/20/2022] [Indexed: 06/16/2023]
Abstract
In Arabidopsis, photoperiodic flowering is controlled by the regulatory hub gene CONSTANS (CO), whereas floral organ senescence is regulated by the jasmonates (JAs). Because these processes are chronologically ordered, it remains unknown whether there are common regulators of both processes. In this study, we discovered that CO protein accumulates in Arabidopsis flowers after floral induction, and it displays a diurnal pattern in floral organs different from that in the leaves. We observed that altered CO expression could affect flower senescence and abscission by interfering with JA response, as shown by petal-specific transcriptomic analysis as well as CO overexpression in JA synthesis and signaling mutants. We found that CO has a ZIM (ZINC-FINGER INFLORESCENCE MERISTEM) like domain that mediates its interaction with the JA response repressor JAZ3 (jasmonate ZIM-domain 3). Their interaction inhibits the repressor activity of JAZ3, resulting in activation of downstream transcription factors involved in promoting flower senescence. Furthermore, we showed that CO, JAZ3, and the E3 ubiquitin ligase COI1 (Coronatine Insensitive 1) could form a protein complex in planta, which promotes the degradation of both CO and JAZ3 in the presence of JAs. Taken together, our results indicate that CO, a key regulator of photoperiodic flowering, is also involved in promoting flower senescence and abscission by augmenting JA signaling and response. We propose that coordinated recruitment of photoperiodic and JA signaling pathways could be an efficient way for plants to chronologically order floral processes and ensure the success of offspring production.
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Affiliation(s)
- Gloria Serrano-Bueno
- Plant Development Group, Institute for Plant Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 41092 Sevilla, Spain.
| | - Pedro de Los Reyes
- Plant Development Group, Institute for Plant Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 41092 Sevilla, Spain
| | - Andrea Chini
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain
| | - Gabriel Ferreras-Garrucho
- Plant Development Group, Institute for Plant Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 41092 Sevilla, Spain
| | | | - Marta Boter
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain
| | - Roberto Solano
- Department of Plant Molecular Genetics, Centro Nacional de Biotecnología, CSIC, 28049 Madrid, Spain
| | - Federico Valverde
- Plant Development Group, Institute for Plant Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 41092 Sevilla, Spain.
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6
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Serrano-Bueno G, Sánchez de Medina Hernández V, Valverde F. Photoperiodic Signaling and Senescence, an Ancient Solution to a Modern Problem? Front Plant Sci 2021; 12:634393. [PMID: 33777070 PMCID: PMC7988197 DOI: 10.3389/fpls.2021.634393] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Accepted: 02/12/2021] [Indexed: 05/22/2023]
Abstract
The length of the day (photoperiod) is a robust seasonal signal originated by earth orbital and translational movements, a resilient external cue to the global climate change, and a predictable hint to initiate or complete different developmental programs. In eukaryotic algae, the gene expression network that controls the cellular response to photoperiod also regulates other basic physiological functions such as starch synthesis or redox homeostasis. Land plants, evolving in a novel and demanding environment, imbued these external signals within the regulatory networks controlling organogenesis and developmental programs. Unlike algae that largely have to deal with cellular physical cues, within the course of evolution land plants had to transfer this external information from the receiving organs to the target tissues, and mobile signals such as hormones were recruited and incorporated in the regulomes. Control of senescence by photoperiod, as suggested in this perspective, would be an accurate way to feed seasonal information into a newly developed function (senescence) using an ancient route (photoperiodic signaling). This way, the plant would assure that two coordinated aspects of development such as flowering and organ senescence were sequentially controlled. As in the case of senescence, there is growing evidence to support the idea that harnessing the reliability of photoperiod regulation over other, more labile signaling pathways could be used as a robust breeding tool to enhance plants against the harmful effects of climate change.
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Serrano-Bueno G, Said FE, de Los Reyes P, Lucas-Reina EI, Ortiz-Marchena MI, Romero JM, Valverde F. CONSTANS-FKBP12 interaction contributes to modulation of photoperiodic flowering in Arabidopsis. Plant J 2020; 101:1287-1302. [PMID: 31661582 DOI: 10.1111/tpj.14590] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 10/21/2019] [Indexed: 05/22/2023]
Abstract
Flowering time is a key process in plant development. Photoperiodic signals play a crucial role in the floral transition in Arabidopsis thaliana, and the protein CONSTANS (CO) has a central regulatory function that is tightly regulated at the transcriptional and post-translational levels. The stability of CO protein depends on a light-driven proteasome process that optimizes its accumulation in the evening to promote the production of the florigen FLOWERING LOCUS T (FT) and induce seasonal flowering. To further investigate the post-translational regulation of CO protein we have dissected its interactome network employing in vivo and in vitro assays and molecular genetics approaches. The immunophilin FKBP12 has been identified in Arabidopsis as a CO interactor that regulates its accumulation and activity. FKBP12 and CO interact through the CCT domain, affecting the stability and function of CO. fkbp12 insertion mutants show a delay in flowering time, while FKBP12 overexpression accelerates flowering, and these phenotypes can be directly related to a change in accumulation of FT protein. The interaction is conserved between the Chlamydomonas algal orthologs CrCO-CrFKBP12, revealing an ancient regulatory step in photoperiod regulation of plant development.
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Affiliation(s)
- Gloria Serrano-Bueno
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
| | - Fatima E Said
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
| | - Pedro de Los Reyes
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
| | - Eva I Lucas-Reina
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
| | - M Isabel Ortiz-Marchena
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
| | - José M Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
- Departamento de Bioquímica Vegetal y Biología Molecular, Facultad de Biología, Universidad de Sevilla, Reina Mercedes, 41012, Sevilla, Spain
| | - Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, CSIC-Universidad de Sevilla, 49 Americo Vespucio, 41092, Sevilla, Spain
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8
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Hayama R, Yang P, Valverde F, Mizoguchi T, Furutani-Hayama I, Vierstra RD, Coupland G. Ubiquitin carboxyl-terminal hydrolases are required for period maintenance of the circadian clock at high temperature in Arabidopsis. Sci Rep 2019; 9:17030. [PMID: 31745110 PMCID: PMC6863813 DOI: 10.1038/s41598-019-53229-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2019] [Accepted: 08/28/2019] [Indexed: 12/18/2022] Open
Abstract
Protein ubiquitylation participates in a number of essential cellular processes including signal transduction and transcription, often by initiating the degradation of specific substrates through the 26S proteasome. Within the ubiquitin-proteasome system, deubiquitylating enzymes (DUBs) not only help generate and maintain the supply of free ubiquitin monomers, they also directly control functions and activities of specific target proteins by modulating the pool of ubiquitylated species. Ubiquitin carboxyl-terminal hydrolases (UCHs) belong to an enzymatic subclass of DUBs, and are represented by three members in Arabidopsis, UCH1, UCH2 and UCH3. UCH1 and UCH2 influence auxin-dependent developmental pathways in Arabidopsis through their deubiquitylation activities, whereas biological and enzymatic functions of UCH3 remain unclear. Here, we demonstrate that Arabidopsis UCH3 acts to maintain the period of the circadian clock at high temperatures redundantly with UCH1 and UCH2. Whereas single uch1, uch2 and uch3 mutants have weak circadian phenotypes, the triple uch mutant displays a drastic lengthening of period at high temperatures that is more extreme than the uch1 uch2 double mutant. UCH3 also possesses a broad deubiquitylation activity against a range of substrates that link ubiquitin via peptide and isopeptide linkages. While the protein target(s) of UCH1-3 are not yet known, we propose that these DUBs act on one or more factors that control period length of the circadian clock through removal of their bound ubiquitin moieties, thus ensuring that the clock oscillates with a proper period even at elevated temperatures.
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Affiliation(s)
- Ryosuke Hayama
- Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linne Weg 10, D-50829, Cologne, Germany. .,Department of Natural Sciences, International Christian University, 3-10-2 Osawa, Mitaka, 181-8585, Tokyo, Japan.
| | - Peizhen Yang
- Department of Genetics, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA.,, Bayer Crop Science, 800 N Lindbergh Blvd, St Louis, Missouri, 63146, USA
| | - Federico Valverde
- Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linne Weg 10, D-50829, Cologne, Germany.,Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de Sevilla, 49th Américo Vespucio Avenue, Sevilla, 41092, Spain
| | - Tsuyoshi Mizoguchi
- Department of Natural Sciences, International Christian University, 3-10-2 Osawa, Mitaka, 181-8585, Tokyo, Japan
| | - Ikuyo Furutani-Hayama
- Department of Natural Sciences, International Christian University, 3-10-2 Osawa, Mitaka, 181-8585, Tokyo, Japan
| | - Richard D Vierstra
- Department of Genetics, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA.,Department of Biology, Washington University in St. Louis, Campus Box 1137, One Brookings Drive, St. Louis, Missouri, 63130, USA
| | - George Coupland
- Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Carl-von-Linne Weg 10, D-50829, Cologne, Germany.
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Valverde F, Groover A, Romero JM. Editorial: Evolution of Gene Regulatory Networks in Plant Development. Front Plant Sci 2017; 8:2126. [PMID: 29326738 PMCID: PMC5736534 DOI: 10.3389/fpls.2017.02126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Accepted: 11/30/2017] [Indexed: 06/07/2023]
Affiliation(s)
- Federico Valverde
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas-Universidad de Sevilla, Seville, Spain
| | - Andrew Groover
- US Forest Service, Pacific Southwest Research Station, Davis, CA, United States
- Department of Plant Biology, University of California, Davis, Davis, CA, United States
| | - José M. Romero
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas-Universidad de Sevilla, Seville, Spain
- Departamento de Bioquímica Vegetal y Biología Molecular, Universidad de Sevilla, Seville, Spain
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10
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Serrano-Bueno G, Romero-Campero FJ, Lucas-Reina E, Romero JM, Valverde F. Evolution of photoperiod sensing in plants and algae. Curr Opin Plant Biol 2017; 37:10-17. [PMID: 28391047 DOI: 10.1016/j.pbi.2017.03.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Revised: 03/17/2017] [Accepted: 03/21/2017] [Indexed: 05/21/2023]
Abstract
Measuring day length confers a strong fitness improvement to photosynthetic organisms as it allows them to anticipate light phases and take the best decisions preceding diurnal transitions. In close association with signals from the circadian clock and the photoreceptors, photoperiodic sensing constitutes also a precise way to determine the passing of the seasons and to take annual decisions such as the best time to flower or the beginning of dormancy. Photoperiodic sensing in photosynthetic organisms is ancient and two major stages in its evolution could be identified, the cyanobacterial time sensing and the evolutionary tool kit that arose in green algae and developed into the photoperiodic system of modern plants. The most recent discoveries about the evolution of the perception of light, measurement of day length and relationship with the circadian clock along the evolution of the eukaryotic green lineage will be discussed in this review.
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Affiliation(s)
- Gloria Serrano-Bueno
- Plant Development Unit, Institute for Plan Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 49th, Americo Vespucio Av., 41092 Sevilla, Spain
| | - Francisco J Romero-Campero
- Plant Development Unit, Institute for Plan Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 49th, Americo Vespucio Av., 41092 Sevilla, Spain
| | - Eva Lucas-Reina
- Plant Development Unit, Institute for Plan Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 49th, Americo Vespucio Av., 41092 Sevilla, Spain
| | - Jose M Romero
- Plant Development Unit, Institute for Plan Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 49th, Americo Vespucio Av., 41092 Sevilla, Spain
| | - Federico Valverde
- Plant Development Unit, Institute for Plan Biochemistry and Photosynthesis, CSIC-Universidad de Sevilla, 49th, Americo Vespucio Av., 41092 Sevilla, Spain.
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11
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de los Reyes P, Romero-Campero FJ, Ruiz MT, Romero JM, Valverde F. Evolution of Daily Gene Co-expression Patterns from Algae to Plants. Front Plant Sci 2017; 8:1217. [PMID: 28751903 PMCID: PMC5508029 DOI: 10.3389/fpls.2017.01217] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Accepted: 06/28/2017] [Indexed: 05/04/2023]
Abstract
Daily rhythms play a key role in transcriptome regulation in plants and microalgae orchestrating responses that, among other processes, anticipate light transitions that are essential for their metabolism and development. The recent accumulation of genome-wide transcriptomic data generated under alternating light:dark periods from plants and microalgae has made possible integrative and comparative analysis that could contribute to shed light on the evolution of daily rhythms in the green lineage. In this work, RNA-seq and microarray data generated over 24 h periods in different light regimes from the eudicot Arabidopsis thaliana and the microalgae Chlamydomonas reinhardtii and Ostreococcus tauri have been integrated and analyzed using gene co-expression networks. This analysis revealed a reduction in the size of the daily rhythmic transcriptome from around 90% in Ostreococcus, being heavily influenced by light transitions, to around 40% in Arabidopsis, where a certain independence from light transitions can be observed. A novel Multiple Bidirectional Best Hit (MBBH) algorithm was applied to associate single genes with a family of potential orthologues from evolutionary distant species. Gene duplication, amplification and divergence of rhythmic expression profiles seems to have played a central role in the evolution of gene families in the green lineage such as Pseudo Response Regulators (PRRs), CONSTANS-Likes (COLs), and DNA-binding with One Finger (DOFs). Gene clustering and functional enrichment have been used to identify groups of genes with similar rhythmic gene expression patterns. The comparison of gene clusters between species based on potential orthologous relationships has unveiled a low to moderate level of conservation of daily rhythmic expression patterns. However, a strikingly high conservation was found for the gene clusters exhibiting their highest and/or lowest expression value during the light transitions.
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Affiliation(s)
- Pedro de los Reyes
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSeville, Spain
| | - Francisco J. Romero-Campero
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSeville, Spain
- Department of Computer Science and Artificial Intelligence, Universidad de SevillaSeville, Spain
| | - M. Teresa Ruiz
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSeville, Spain
| | - José M. Romero
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSeville, Spain
| | - Federico Valverde
- Plant Development Unit, Institute for Plant Biochemistry and Photosynthesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSeville, Spain
- *Correspondence: Federico Valverde
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Briones-Moreno A, Hernández-García J, Vargas-Chávez C, Romero-Campero FJ, Romero JM, Valverde F, Blázquez MA. Evolutionary Analysis of DELLA-Associated Transcriptional Networks. Front Plant Sci 2017; 8:626. [PMID: 28487716 PMCID: PMC5404181 DOI: 10.3389/fpls.2017.00626] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2017] [Accepted: 04/07/2017] [Indexed: 05/18/2023]
Abstract
DELLA proteins are transcriptional regulators present in all land plants which have been shown to modulate the activity of over 100 transcription factors in Arabidopsis, involved in multiple physiological and developmental processes. It has been proposed that DELLAs transduce environmental information to pre-wired transcriptional circuits because their stability is regulated by gibberellins (GAs), whose homeostasis largely depends on environmental signals. The ability of GAs to promote DELLA degradation coincides with the origin of vascular plants, but the presence of DELLAs in other land plants poses at least two questions: what regulatory properties have DELLAs provided to the behavior of transcriptional networks in land plants, and how has the recruitment of DELLAs by GA signaling affected this regulation. To address these issues, we have constructed gene co-expression networks of four different organisms within the green lineage with different properties regarding DELLAs: Arabidopsis thaliana and Solanum lycopersicum (both with GA-regulated DELLA proteins), Physcomitrella patens (with GA-independent DELLA proteins) and Chlamydomonas reinhardtii (a green alga without DELLA), and we have examined the relative evolution of the subnetworks containing the potential DELLA-dependent transcriptomes. Network analysis indicates a relative increase in parameters associated with the degree of interconnectivity in the DELLA-associated subnetworks of land plants, with a stronger effect in species with GA-regulated DELLA proteins. These results suggest that DELLAs may have played a role in the coordination of multiple transcriptional programs along evolution, and the function of DELLAs as regulatory 'hubs' became further consolidated after their recruitment by GA signaling in higher plants.
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Affiliation(s)
- Asier Briones-Moreno
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas – Universidad Politécnica de ValenciaValencia, Spain
| | - Jorge Hernández-García
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas – Universidad Politécnica de ValenciaValencia, Spain
| | - Carlos Vargas-Chávez
- Institute for Integrative Systems Biology (I2SysBio), University of ValenciaValencia, Spain
| | - Francisco J. Romero-Campero
- Department of Computer Science and Artificial Intelligence, Universidad de SevillaSevilla, Spain
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas – Universidad de SevillaSevilla, Spain
| | - José M. Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas – Universidad de SevillaSevilla, Spain
| | - Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas – Universidad de SevillaSevilla, Spain
| | - Miguel A. Blázquez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas – Universidad Politécnica de ValenciaValencia, Spain
- *Correspondence: Miguel A. Blázquez,
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Albi T, Ruiz MT, de los Reyes P, Valverde F, Romero JM. Characterization of the Sucrose Phosphate Phosphatase (SPP) Isoforms from Arabidopsis thaliana and Role of the S6PPc Domain in Dimerization. PLoS One 2016; 11:e0166308. [PMID: 27855180 PMCID: PMC5113954 DOI: 10.1371/journal.pone.0166308] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Accepted: 10/26/2016] [Indexed: 12/16/2022] Open
Abstract
Sucrose-phosphate phosphatase (SPP) catalyses the final step in the sucrose biosynthesis pathway. Arabidopsis thaliana genome codifies four SPP isoforms. In this study, the four Arabidopsis thaliana genes coding for SPP isoforms have been cloned, expressed in Escherichia coli and the kinetic and regulatory properties of the purified enzymes analysed. SPP2 is the isoform showing the highest activity, with SPP3b and SPP3a showing lower activity levels. No activity was detected for SPP1. We propose that this lack of activity is probably due to the absence of an essential amino acid participating in catalysis and/or in the binding of the substrate, sucrose-6-phosphate (Suc6P). The expression patterns of Arabidopsis SPP genes indicate that SPP2 and SPP3b are the main isoforms expressed in different tissues and organs, although the non-catalytic SPP1 is the main isoform expressed in roots. Thus, SPP1 could have acquired new unknown functions. We also show that the three catalytically active SPPs from Arabidopsis are dimers. By generating a chimeric SPP composed of the monomeric cyanobacterial SPP fused to the higher plant non-catalytic S6PPc domain (from SPP2), we show that the S6PPc domain is responsible for SPP dimerization. This is the first experimental study on the functionality and gene expression pattern of all the SPPs from a single plant species.
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Affiliation(s)
- Tomás Albi
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla and Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - M. Teresa Ruiz
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla and Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - Pedro de los Reyes
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla and Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla and Consejo Superior de Investigaciones Científicas, Seville, Spain
| | - José M. Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla and Consejo Superior de Investigaciones Científicas, Seville, Spain
- * E-mail:
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Valverde F, Romero-Campero FJ, León R, Guerrero MG, Serrano A. New challenges in microalgae biotechnology. Eur J Protistol 2016; 55:95-101. [DOI: 10.1016/j.ejop.2016.03.002] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Revised: 02/26/2016] [Accepted: 03/12/2016] [Indexed: 11/28/2022]
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Romero-Campero FJ, Perez-Hurtado I, Lucas-Reina E, Romero JM, Valverde F. ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage. BMC Genomics 2016; 17:227. [PMID: 26968660 PMCID: PMC4788957 DOI: 10.1186/s12864-016-2564-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 03/02/2016] [Indexed: 11/28/2022] Open
Abstract
BACKGROUND Chlamydomonas reinhardtii is the model organism that serves as a reference for studies in algal genomics and physiology. It is of special interest in the study of the evolution of regulatory pathways from algae to higher plants. Additionally, it has recently gained attention as a potential source for bio-fuel and bio-hydrogen production. The genome of Chlamydomonas is available, facilitating the analysis of its transcriptome by RNA-seq data. This has produced a massive amount of data that remains fragmented making necessary the application of integrative approaches based on molecular systems biology. RESULTS We constructed a gene co-expression network based on RNA-seq data and developed a web-based tool, ChlamyNET, for the exploration of the Chlamydomonas transcriptome. ChlamyNET exhibits a scale-free and small world topology. Applying clustering techniques, we identified nine gene clusters that capture the structure of the transcriptome under the analyzed conditions. One of the most central clusters was shown to be involved in carbon/nitrogen metabolism and signalling, whereas one of the most peripheral clusters was involved in DNA replication and cell cycle regulation. The transcription factors and regulators in the Chlamydomonas genome have been identified in ChlamyNET. The biological processes potentially regulated by them as well as their putative transcription factor binding sites were determined. The putative light regulated transcription factors and regulators in the Chlamydomonas genome were analyzed in order to provide a case study on the use of ChlamyNET. Finally, we used an independent data set to cross-validate the predictive power of ChlamyNET. CONCLUSIONS The topological properties of ChlamyNET suggest that the Chlamydomonas transcriptome posseses important characteristics related to error tolerance, vulnerability and information propagation. The central part of ChlamyNET constitutes the core of the transcriptome where most authoritative hub genes are located interconnecting key biological processes such as light response with carbon and nitrogen metabolism. Our study reveals that key elements in the regulation of carbon and nitrogen metabolism, light response and cell cycle identified in higher plants were already established in Chlamydomonas. These conserved elements are not only limited to transcription factors, regulators and their targets, but also include the cis-regulatory elements recognized by them.
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Affiliation(s)
- Francisco J. Romero-Campero
- />Departamento de Ciencias de la Computación e Inteligencia Artificial, Universidad de Sevilla, Reina Mercedes s/n, 41012 Sevilla, Spain
| | - Ignacio Perez-Hurtado
- />Departamento de Ciencias de la Computación e Inteligencia Artificial, Universidad de Sevilla, Reina Mercedes s/n, 41012 Sevilla, Spain
| | - Eva Lucas-Reina
- />Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Americo Vespucio 49, 41092 Sevilla, Spain
| | - Jose M. Romero
- />Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Americo Vespucio 49, 41092 Sevilla, Spain
| | - Federico Valverde
- />Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Americo Vespucio 49, 41092 Sevilla, Spain
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Hernández A, Herrera-Palau R, Madroñal JM, Albi T, López-Lluch G, Perez-Castiñeira JR, Navas P, Valverde F, Serrano A. Vacuolar H(+)-Pyrophosphatase AVP1 is Involved in Amine Fungicide Tolerance in Arabidopsis thaliana and Provides Tridemorph Resistance in Yeast. Front Plant Sci 2016; 7:85. [PMID: 26904057 PMCID: PMC4746327 DOI: 10.3389/fpls.2016.00085] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Accepted: 01/17/2016] [Indexed: 05/12/2023]
Abstract
Amine fungicides are widely used as crop protectants. Their success is believed to be related to their ability to inhibit postlanosterol sterol biosynthesis in fungi, in particular sterol-Δ(8),Δ(7)-isomerases and sterol-Δ(14)-reductases, with a concomitant accumulation of toxic abnormal sterols. However, their actual cellular effects and mechanisms of death induction are still poorly understood. Paradoxically, plants exhibit a natural resistance to amine fungicides although they have similar enzymes in postcicloartenol sterol biosynthesis that are also susceptible to fungicide inhibition. A major difference in vacuolar ion homeostasis between plants and fungi is the presence of a dual set of primary proton pumps in the former (V-ATPase and H(+)-pyrophosphatase), but only the V-ATPase in the latter. Abnormal sterols affect the proton-pumping capacity of V-ATPases in fungi and this has been proposed as a major determinant in fungicide action. Using Saccharomyces cerevisiae as a model fungus, we provide evidence that amine fungicide treatment induced cell death by apoptosis. Cell death was concomitant with impaired H(+)-pumping capacity in vacuole vesicles and dependent on vacuolar proteases. Also, the heterologous expression of the Arabidopsis thaliana main H(+)-pyrophosphatase (AVP1) at the fungal vacuolar membrane reduced apoptosis levels in yeast and increased resistance to amine fungicides. Consistently, A. thaliana avp1 mutant seedlings showed increased susceptibility to this amine fungicide, particularly at the level of root development. This is in agreement with AVP1 being nearly the sole H(+)-pyrophosphatase gene expressed at the root elongation zones. All in all, the present data suggest that H(+)-pyrophosphatases are major determinants of plant tolerance to amine fungicides.
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Affiliation(s)
- Agustín Hernández
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
- Departamento de Parasitologia, Instituto de Ciências Biomédicas, Universidade de São PauloSão Paulo, Brazil
| | - Rosana Herrera-Palau
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
| | - Juan M. Madroñal
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
| | - Tomás Albi
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
| | - Guillermo López-Lluch
- Centro Andaluz de Biología del Desarrollo and Centre of Biomedical Research in Rare Diseases, ISCIII, Consejo Superior de Investigaciones Científicas, Universidad Pablo de OlavideSevilla, Spain
| | - José R. Perez-Castiñeira
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
| | - Plácido Navas
- Centro Andaluz de Biología del Desarrollo and Centre of Biomedical Research in Rare Diseases, ISCIII, Consejo Superior de Investigaciones Científicas, Universidad Pablo de OlavideSevilla, Spain
| | - Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
| | - Aurelio Serrano
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas, Universidad de SevillaSevilla, Spain
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Sarid-Krebs L, Panigrahi KCS, Fornara F, Takahashi Y, Hayama R, Jang S, Tilmes V, Valverde F, Coupland G. Phosphorylation of CONSTANS and its COP1-dependent degradation during photoperiodic flowering of Arabidopsis. Plant J 2015; 84:451-63. [PMID: 26358558 DOI: 10.1111/tpj.13022] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Revised: 08/06/2015] [Accepted: 08/24/2015] [Indexed: 05/20/2023]
Abstract
Seasonal flowering involves responses to changes in day length. In Arabidopsis thaliana, the CONSTANS (CO) transcription factor promotes flowering in the long days of spring and summer. Late flowering in short days is due to instability of CO, which is efficiently ubiquitinated in the dark by the CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) E3 ligase complex. Here we show that CO is also phosphorylated. Phosphorylated and unphosphorylated forms are detected throughout the diurnal cycle but their ratio varies, with the relative abundance of the phosphorylated form being higher in the light and lower in the dark. These changes in relative abundance require COP1, because in the cop1 mutant the phosphorylated form is always more abundant. Inactivation of the PHYTOCHROME A (PHYA), CRYPTOCHROME 1 (CRY1) and CRYPTOCHROME 2 (CRY2) photoreceptors in the phyA cry1 cry2 triple mutant most strongly reduces the amount of the phosphorylated form so that unphosphorylated CO is more abundant. This effect is caused by increased COP1 activity, as it is overcome by introduction of the cop1 mutation in the cop1 phyA cry1 cry2 quadruple mutant. Degradation of CO is also triggered in red light, and as in darkness this increases the relative abundance of unphosphorylated CO. Finally, a fusion protein containing truncated CO protein including only the carboxy-terminal region was phosphorylated in transgenic plants, locating at least one site of phosphorylation in this region. We propose that CO phosphorylation contributes to the photoperiodic flowering response by enhancing the rate of CO turnover via activity of the COP1 ubiquitin ligase.
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Affiliation(s)
- Liron Sarid-Krebs
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Kishore C S Panigrahi
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Fabio Fornara
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Yasuyuki Takahashi
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Ryosuke Hayama
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Seonghoe Jang
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Vicky Tilmes
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - Federico Valverde
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
| | - George Coupland
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, Cologne, D-50829, Germany
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Lucas-Reina E, Romero-Campero FJ, Romero JM, Valverde F. An Evolutionarily Conserved DOF-CONSTANS Module Controls Plant Photoperiodic Signaling. Plant Physiol 2015; 168:561-74. [PMID: 25897001 PMCID: PMC4453789 DOI: 10.1104/pp.15.00321] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Accepted: 04/19/2015] [Indexed: 05/18/2023]
Abstract
The response to daylength is a crucial process that evolved very early in plant evolution, entitling the early green eukaryote to predict seasonal variability and attune its physiological responses to the environment. The photoperiod responses evolved into the complex signaling pathways that govern the angiosperm floral transition today. The Chlamydomonas reinhardtii DNA-Binding with One Finger (CrDOF) gene controls transcription in a photoperiod-dependent manner, and its misexpression influences algal growth and viability. In short days, CrDOF enhances CrCO expression, a homolog of plant CONSTANS (CO), by direct binding to its promoter, while it reduces the expression of cell division genes in long days independently of CrCO. In Arabidopsis (Arabidopsis thaliana), transgenic plants overexpressing CrDOF show floral delay and reduced expression of the photoperiodic genes CO and FLOWERING LOCUS T. The conservation of the DOF-CO module during plant evolution could be an important clue to understanding diversification by the inheritance of conserved gene toolkits in key developmental programs.
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Affiliation(s)
- Eva Lucas-Reina
- Institute for Plant Biochemistry and Photosynthesis, Plant Development Unit, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain (E.L.-R., J.M.R., F.V.); andDepartamento de Ciencias de la Computación e Inteligencia Artificial, Grupo de Investigación en Computación Natural, Universidad de Sevilla, 41012 Seville, Spain (F.J.R.-C.)
| | - Francisco J Romero-Campero
- Institute for Plant Biochemistry and Photosynthesis, Plant Development Unit, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain (E.L.-R., J.M.R., F.V.); andDepartamento de Ciencias de la Computación e Inteligencia Artificial, Grupo de Investigación en Computación Natural, Universidad de Sevilla, 41012 Seville, Spain (F.J.R.-C.)
| | - José M Romero
- Institute for Plant Biochemistry and Photosynthesis, Plant Development Unit, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain (E.L.-R., J.M.R., F.V.); andDepartamento de Ciencias de la Computación e Inteligencia Artificial, Grupo de Investigación en Computación Natural, Universidad de Sevilla, 41012 Seville, Spain (F.J.R.-C.)
| | - Federico Valverde
- Institute for Plant Biochemistry and Photosynthesis, Plant Development Unit, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain (E.L.-R., J.M.R., F.V.); andDepartamento de Ciencias de la Computación e Inteligencia Artificial, Grupo de Investigación en Computación Natural, Universidad de Sevilla, 41012 Seville, Spain (F.J.R.-C.)
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Lavilla I, Valverde F, Gil S, Costas M, Pena F, Bendicho C. Determination of total lead and lead species according to their lability in coastal seawater by Chelex-100 titration and electrothermal-atomic absorption spectrometry. Chemical Speciation & Bioavailability 2015. [DOI: 10.3184/095422911x13200816298430] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Ortiz-Marchena MI, Romero JM, Valverde F. Photoperiodic control of sugar release during the floral transition: What is the role of sugars in the florigenic signal? Plant Signal Behav 2015; 10:e1017168. [PMID: 26039474 PMCID: PMC4623508 DOI: 10.1080/15592324.2015.1017168] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2014] [Revised: 01/30/2015] [Accepted: 01/30/2015] [Indexed: 05/19/2023]
Abstract
Florigen is a mobile signal released by the leaves that reaching the shoot apical meristem (SAM), changes its developmental program from vegetative to reproductive. The protein FLOWERING LOCUS T (FT) constitutes an important element of the florigen, but other components such as sugars, have been also proposed to be part of this signal. (1-5) We have studied the accumulation and composition of starch during the floral transition in Arabidopsis thaliana in order to understand the role of carbon mobilization in this process. In A. thaliana and Antirrhinum majus the gene coding for the Granule-Bound Starch Synthase (GBSS) is regulated by the circadian clock (6,7) while in the green alga Chlamydomonas reinhardtii the homolog gene CrGBSS is controlled by photoperiod and circadian signals. (8,9) In a recent paper(10) we described the role of the central photoperiodic factor CONSTANS (CO) in the regulation of GBSS expression in Arabidopsis. This regulation is in the basis of the change in the balance between starch and free sugars observed during the floral transition. We propose that this regulation may contribute to the florigenic signal and to the increase in sugar transport required during the flowering process.
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Affiliation(s)
- M Isabel Ortiz-Marchena
- Instituto de Bioquímica Vegetal y Fotosíntesis; Consejo Superior de Investigaciones Científicas y Universidad de Sevilla; Sevilla, Spain
| | - José M Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis; Consejo Superior de Investigaciones Científicas y Universidad de Sevilla; Sevilla, Spain
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Ortiz-Marchena MI, Albi T, Lucas-Reina E, Said FE, Romero-Campero FJ, Cano B, Ruiz MT, Romero JM, Valverde F. Photoperiodic control of carbon distribution during the floral transition in Arabidopsis. Plant Cell 2014; 26:565-84. [PMID: 24563199 PMCID: PMC3967026 DOI: 10.1105/tpc.114.122721] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2014] [Revised: 01/08/2014] [Accepted: 01/30/2014] [Indexed: 05/18/2023]
Abstract
Flowering is a crucial process that demands substantial resources. Carbon metabolism must be coordinated with development through a control mechanism that optimizes fitness for any physiological need and growth stage of the plant. However, how sugar allocation is controlled during the floral transition is unknown. Recently, the role of a CONSTANS (CO) ortholog (Cr-CO) in the control of the photoperiod response in the green alga Chlamydomonas reinhardtii and its influence on starch metabolism was demonstrated. In this work, we show that transitory starch accumulation and glycan composition during the floral transition in Arabidopsis thaliana are regulated by photoperiod. Employing a multidisciplinary approach, we demonstrate a role for CO in regulating the level and timing of expression of the GRANULE BOUND STARCH SYNTHASE (GBSS) gene. Furthermore, we provide a detailed characterization of a GBSS mutant involved in transitory starch synthesis and analyze its flowering time phenotype in relation to its altered capacity to synthesize amylose and to modify the plant free sugar content. Photoperiod modification of starch homeostasis by CO may be crucial for increasing the sugar mobilization demanded by the floral transition. This finding contributes to our understanding of the flowering process.
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Affiliation(s)
- M. Isabel Ortiz-Marchena
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - Tomás Albi
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - Eva Lucas-Reina
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - Fatima E. Said
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - Francisco J. Romero-Campero
- Departamento de Ciencias de la Computación e Inteligencia Artificial, Grupo de Investigación en Computación Natural, Universidad de Sevilla, 41012 Seville, Spain
| | - Beatriz Cano
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - M. Teresa Ruiz
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - José M. Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
| | - Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas and Universidad de Sevilla, 41092 Seville, Spain
- Address correspondence to
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Ortiz-Marchena M, Ruiz M, Valverde F, Romero J. Determination of Soluble Sugars in Arabidopsis thaliana Leaves by Anion Exchange Chromatography. Bio Protoc 2014. [DOI: 10.21769/bioprotoc.1317] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022] Open
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Albi T, Ortiz-Marchena M, Ruiz M, Romero J, Valverde F. Purification of Starch Granules from Arabidopsis Leaves and Determination of Granule-Bound Starch Synthase Activity. Bio Protoc 2014. [DOI: 10.21769/bioprotoc.1316] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022] Open
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Romero-Campero FJ, Lucas-Reina E, Said FE, Romero JM, Valverde F. A contribution to the study of plant development evolution based on gene co-expression networks. Front Plant Sci 2013; 4:291. [PMID: 23935602 PMCID: PMC3732916 DOI: 10.3389/fpls.2013.00291] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Accepted: 07/13/2013] [Indexed: 05/04/2023]
Abstract
Phototrophic eukaryotes are among the most successful organisms on Earth due to their unparalleled efficiency at capturing light energy and fixing carbon dioxide to produce organic molecules. A conserved and efficient network of light-dependent regulatory modules could be at the bases of this success. This regulatory system conferred early advantages to phototrophic eukaryotes that allowed for specialization, complex developmental processes and modern plant characteristics. We have studied light-dependent gene regulatory modules from algae to plants employing integrative-omics approaches based on gene co-expression networks. Our study reveals some remarkably conserved ways in which eukaryotic phototrophs deal with day length and light signaling. Here we describe how a family of Arabidopsis transcription factors involved in photoperiod response has evolved from a single algal gene according to the innovation, amplification and divergence theory of gene evolution by duplication. These modifications of the gene co-expression networks from the ancient unicellular green algae Chlamydomonas reinhardtii to the modern brassica Arabidopsis thaliana may hint on the evolution and specialization of plants and other organisms.
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Affiliation(s)
| | - Eva Lucas-Reina
- Molecular Plant Development and Metabolism, Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de SevillaSevilla, Spain
| | - Fatima E. Said
- Molecular Plant Development and Metabolism, Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de SevillaSevilla, Spain
| | - José M. Romero
- Molecular Plant Development and Metabolism, Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de SevillaSevilla, Spain
| | - Federico Valverde
- Molecular Plant Development and Metabolism, Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de SevillaSevilla, Spain
- *Correspondence: Federico Valverde, Molecular Plant Development and Metabolism Group, Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicasy Universidad de Sevilla, 49th, Americo Vespucio Avenue, 41092 Sevilla, Spain e-mail:
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Lazaro A, Valverde F, Piñeiro M, Jarillo JA. The Arabidopsis E3 ubiquitin ligase HOS1 negatively regulates CONSTANS abundance in the photoperiodic control of flowering. Plant Cell 2012; 24:982-99. [PMID: 22408073 PMCID: PMC3336113 DOI: 10.1105/tpc.110.081885] [Citation(s) in RCA: 167] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2010] [Revised: 02/01/2012] [Accepted: 02/16/2012] [Indexed: 05/18/2023]
Abstract
The Arabidopsis thaliana early in short days6 (esd6) mutant was isolated in a screen for mutations that accelerate flowering time. Among other developmental alterations, esd6 displays early flowering in both long- and short-day conditions. Fine mapping of the mutation showed that the esd6 phenotype is caused by a lesion in the high expression of osmotically responsive genes1 (HOS1) locus, which encodes a RING finger-containing E3 ubiquitin ligase. The esd6/hos1 mutation causes decreased flowering locus C expression and requires CONSTANS (CO) protein for its early flowering phenotype under long days. Moreover, CO and HOS1 physically interact in vitro and in planta, and HOS1 regulates CO abundance, particularly during the daylight period. Accordingly, hos1 causes a shift in the regular long-day pattern of expression of flowering locus T (FT) transcript, starting to rise 4 h after dawn in the mutant. In addition, HOS1 interacts synergistically with constitutive photomorphogenic1, another regulator of CO protein stability, in the regulation of flowering time. Taken together, these results indicate that HOS1 is involved in the control of CO abundance, ensuring that CO activation of FT occurs only when the light period reaches a certain length and preventing precocious flowering in Arabidopsis.
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Affiliation(s)
- Ana Lazaro
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria-Universidad Politécnica de Madrid, 28223 Madrid, Spain
| | - Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de Sevilla, 41092 Sevilla, Spain
| | - Manuel Piñeiro
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria-Universidad Politécnica de Madrid, 28223 Madrid, Spain
| | - Jose A. Jarillo
- Centro de Biotecnología y Genómica de Plantas, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria-Universidad Politécnica de Madrid, 28223 Madrid, Spain
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Abstract
A network of promoting and inhibiting pathways that respond to environmental and internal signals controls the flowering transition. The outcome of this regulatory network establishes, for any particular plant, the correct time of the year to flower. The photoperiod pathway channels inputs from light, day length, and the circadian clock to promote the floral transition. CONSTANS (CO) is a central regulator of this pathway, triggering the production of the mobile florigen hormone FT (FLOWERING LOCUS T) that induces flower differentiation. Because plant reproductive fitness is directly related to its capacity to flower at a precise time, the photoperiod pathway is present in all known plant species. Recent findings have stretched the evolutionary span of this photophase signal to unicellular algae, which show unexpected conserved characteristics with modern plant photoperiodic responses. In this review, a comparative description of the photoperiodic systems in algae and plants will be presented and a general role for the CO family of transcriptional activators proposed.
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Affiliation(s)
- Federico Valverde
- Molecular Plant Development and Metabolism Group, Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de Sevilla, 49 Americo Vespucio Avenue, 41092-Sevilla, Spain.
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Condori RL, Huanca W, Chileno M, Cainzo J, Valverde F, Becerra JJ, Quintela LA, Herradon PG. 252 EFFECT OF FOLLICLE-STIMULATING HORMONE ADDITION ON IN VITRO MATURATION AND CLEAVAGE OF ALPACA (VICUGNA PACOS) EMBRYOS. Reprod Fertil Dev 2011. [DOI: 10.1071/rdv23n1ab252] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
We have previously reported that alpaca oocytes require between 38 and 42 h of maturation time (Huanca et al. 2010 Reprod. Fertil Dev. 22(1), 327). The objective of this study was to evaluate the effect of the addition of FSH in the maturation medium on nuclear maturation and cleavage rate. Ovaries were collected from a slaughterhouse and transported to the laboratory in a thermos flask containing a saline solution 0.9% with antibiotic antimycotic at 35°C. Cumulus–oocyte complexes (COC) were obtained by slicing of ovaries with a scalpel and were pooled in a conical tube for sedimentation before evaluation. The 476 COC with homogeneous cytoplasm and 2 or more layers of cumulus cells were transferred to plates with a 40-μmL drop of maturation medium TCM-199 supplemented with 10% FCS (vol:vol), 10 μg mL–1 of hCG, 0.2 mM sodium pyruvate, 50 μg mL–1 of gentamicine, and 1 μg mL–1 of oestradiol plus 0.5 μg mL–1 of FSH (Folltropin, Bioniche Animal Health, Belleville, Ontario, Canada) according the following treatments: T1 (Control): FSH by 42 h, T2: 21 h with FSH + 21 h without FSH, T3: 21 h without FSH + 21 h with FSH. The COC were maintenance under mineral oil with 10 to 12 oocytes per drop and maturated 42 h at 39°C in an atmosphere of 5% CO2 and high humidity. After the maturation time, part of the COC were removed from maturation medium and washed with PBS supplemented with 10% FCS and 1 mg/mL of hyaluronidase and fixed in ethanol: acetic acid (3:1). Oocytes were placed on the slide with minimum medium and stained with 1% orcein for 5 min. The slides were examined under a phase contrast microscope at ×400 to evaluate the status of nuclear maturation and classify as germinal vesicle (GV), metaphase I (MI), anaphase–telophase, metaphase II (MII), and degenerated. The other part of oocytes was fertilized in vitro using epididymal sperm. Motile spermatozoa were obtained by centrifugation at 600 × g on a percoll discontinuous gradient (22.5:45.0%) for 10 min. After the supernatant was removed by aspiration, the pellet was resuspended in TL HEPES and centrifuged again at 300 × g by 5 m. The pellet was resuspended in TL Stock. Gametes were coincubated for 18 h at 39°C with 5% CO2 and high humidity. Presumptive zygotes were culture in KSOM supplemented with 1 mM of glutamine, 0.3 mM of sodium pyruvate, 50 μg mL–1 of gentamicine, ethylenediaminetetraacetic acid, amino acids essentials and nonessentials, and BSA by 3 days and cultured in SOF medium for 7 days. Cleavage rate was evaluated at 72 h. Proportional data were compared by chi-square test. The proportions of oocytes reaching MII stage were 64.9 ± 8.1, 49.2 ± 9.4, and 53.8 ± 7.5% for T1, T2, and T3, respectively. Cleavage rates were 39.1, 36.3, and 33.1% and blastocysts rates were 13.6, 16.1, and 14.5% for T1, T2, and T3, respectively. The results suggest that the moment of addition of FSH does not have an effect on the maturation and cleavage rate of alpaca oocytes.
This work was supported by Grant 064 – FINCyT – PIBAP 2008 and Grant 032 – PROCYT – CONCYTEC.
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Romero JM, Valverde F. Evolutionarily conserved photoperiod mechanisms in plants: when did plant photoperiodic signaling appear? Plant Signal Behav 2009; 4:642-4. [PMID: 19820341 PMCID: PMC2710563 DOI: 10.4161/psb.4.7.8975] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Day-length and the circadian clock control critical aspects of plant development such as the onset of reproduction by the photoperiodic pathway. CONSTANS (CO) regulates the expression of a florigenic mobile signal from leaves to the apical meristem and thus is central to the regulation of photoperiodic flowering. This regulatory control is present in all higher plants, but the time in evolution when it arose was unknown. We have shown that the genomes of green microalgae encode members of the CONSTANS-like (COL) protein family. One of these genes, the Chlamydomonas reinhardtii CO homolog (CrCO), can complement the co mutation in Arabidopsis. CrCO expression is controlled by the clock and photoperiod in Chlamydomonas and at the same time is involved in the correct timing of several circadian output processes such as the accumulation of starch or the coordination of cell growth and division. We have proposed that, since very early in the evolutionary lineage that gave rise to higher plants, CO homologs have been involved in the photoperiod control of important developmental processes, and that the recruitment of COL proteins in other roles may have been crucial for their evolutionary success.
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Affiliation(s)
- José M Romero
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de Sevilla, Sevilla, Spain
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Serrano G, Herrera-Palau R, Romero JM, Serrano A, Coupland G, Valverde F. Chlamydomonas CONSTANS and the evolution of plant photoperiodic signaling. Curr Biol 2009; 19:359-68. [PMID: 19230666 DOI: 10.1016/j.cub.2009.01.044] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2008] [Revised: 01/12/2009] [Accepted: 01/15/2009] [Indexed: 12/12/2022]
Abstract
BACKGROUND The circadian clock controls several important processes in plant development, including the phase transition from vegetative growth to flowering. In Arabidopsis thaliana, the circadian-regulated gene CONSTANS (CO) plays a central role in the photoperiodic control of the floral transition, one of the most conserved flowering responses among distantly related plants. CO is a member of a plant-specific family of transcription factors, and when it arose during the evolution of higher plants is unclear. RESULTS A CO homologous gene present in the genome of the unicellular green alga Chlamydomonas reinhardtii (CrCO) can complement the Arabidopsis co mutation and promote early flowering in wild-type plants when expressed under different promoters. Transcript levels of FLOWERING LOCUS T (FT), the main target of CO, are increased in CrCO transgenic plants in a way similar to those in plants overexpressing CO. In the microalga, expression of CrCO is influenced by day length and the circadian clock, being higher in short photoperiods. Reduction of CrCO expression in Chlamydomonas by RNA interference induces defects in culture growth, whereas algae induced to express high levels of CrCO show alterations in several circadian output processes, such as starch accumulation and the onset of expression of genes that regulate the cell cycle. CONCLUSIONS The effects observed may reflect a conserved role for CrCO in the coordination of processes regulated by photoperiod and the circadian clock. Our data indicate that CO orthologs probably represent ancient regulators of photoperiod-dependent events and that these regulators arose early in the evolutionary lineage that gave rise to flowering plants.
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Affiliation(s)
- Gloria Serrano
- Instituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas y Universidad de Sevilla, Américo Vespucio 49, 41092 Sevilla, Spain
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Ventriglia T, Kuhn ML, Ruiz MT, Ribeiro-Pedro M, Valverde F, Ballicora MA, Preiss J, Romero JM. Two Arabidopsis ADP-glucose pyrophosphorylase large subunits (APL1 and APL2) are catalytic. Plant Physiol 2008; 148:65-76. [PMID: 18614708 PMCID: PMC2528121 DOI: 10.1104/pp.108.122846] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2008] [Accepted: 06/30/2008] [Indexed: 05/17/2023]
Abstract
ADP-glucose (Glc) pyrophosphorylase (ADP-Glc PPase) catalyzes the first committed step in starch biosynthesis. Higher plant ADP-Glc PPase is a heterotetramer (alpha(2)beta(2)) consisting of two small and two large subunits. There is increasing evidence that suggests that catalytic and regulatory properties of the enzyme from higher plants result from the synergy of both types of subunits. In Arabidopsis (Arabidopsis thaliana), two genes encode small subunits (APS1 and APS2) and four large subunits (APL1-APL4). Here, we show that in Arabidopsis, APL1 and APL2, besides their regulatory role, have catalytic activity. Heterotetramers formed by combinations of a noncatalytic APS1 and the four large subunits showed that APL1 and APL2 exhibited ADP-Glc PPase activity with distinctive sensitivities to the allosteric activator (3-phosphoglycerate). Mutation of the Glc-1-P binding site of Arabidopsis and potato (Solanum tuberosum) isoforms confirmed these observations. To determine the relevance of these activities in planta, a T-DNA mutant of APS1 (aps1) was characterized. aps1 is starchless, lacks ADP-Glc PPase activity, APS1 mRNA, and APS1 protein, and is late flowering in long days. Transgenic lines of the aps1 mutant, expressing an inactivated form of APS1, recovered the wild-type phenotype, indicating that APL1 and APL2 have catalytic activity and may contribute to ADP-Glc synthesis in planta.
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Affiliation(s)
- Tiziana Ventriglia
- Instituto de Bioquímica Vegetal y Fotosíntesis, Centro de Investigaciones Científicas Isla de la Cartuja, Universidad de Sevilla-CSIC, 41092-Sevilla, Spain
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Jang S, Marchal V, Panigrahi KCS, Wenkel S, Soppe W, Deng XW, Valverde F, Coupland G. Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. EMBO J 2008; 27:1277-88. [PMID: 18388858 PMCID: PMC2291449 DOI: 10.1038/emboj.2008.68] [Citation(s) in RCA: 358] [Impact Index Per Article: 22.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2007] [Accepted: 03/10/2008] [Indexed: 01/17/2023] Open
Abstract
The transcriptional regulator CONSTANS (CO) promotes flowering of Arabidopsis under long summer days (LDs) but not under short winter days (SDs). Post-translational regulation of CO is crucial for this response by stabilizing the protein at the end of a LD, whereas promoting its degradation throughout the night under LD and SD. We show that mutations in CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1), a component of a ubiquitin ligase, cause extreme early flowering under SDs, and that this is largely dependent on CO activity. Furthermore, transcription of the CO target gene FT is increased in cop1 mutants and decreased in plants overexpressing COP1 in phloem companion cells. COP1 and CO interact in vivo and in vitro through the C-terminal region of CO. COP1 promotes CO degradation mainly in the dark, so that in cop1 mutants CO protein but not CO mRNA abundance is dramatically increased during the night. However, in the morning CO degradation occurs independently of COP1 by a phytochrome B-dependent mechanism. Thus, COP1 contributes to day length perception by reducing the abundance of CO during the night and thereby delaying flowering under SDs.
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Affiliation(s)
- Seonghoe Jang
- Department of Plant Developmental Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany
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Fourrat L, Iddar A, Valverde F, Serrano A, Soukri A. Effects of oxidative and nitrosative stress on Tetrahymena pyriformis glyceraldehyde-3-phosphate dehydrogenase. J Eukaryot Microbiol 2008; 54:338-46. [PMID: 17669159 DOI: 10.1111/j.1550-7408.2007.00275.x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Previous reports showed that hydrogen peroxide and the NO-generating reagent sodium nitroprusside (SNP)-modulated enzymatic activity of animal glyceraldehyde-3-phosphate dehydrogenase (GAPDH, EC 1.2.1.12). These modifications are suggested to have a physiological regulatory role. To gain further insight into this regulatory process the model ciliated protozoan Tetrahymena pyriformis was chosen. Both reagents inhibited growth of T. pyriformis cultures and produced a specific increase of GAPDH protein but only NO seemed to reduce GAPDH activity in cell-free extracts. Both specific activity and pI were found to be altered in the in vivo NO-treated purified enzyme, but no effect was detected by the in vivo H(2)O(2) treatment. Analytical chromatofocusing showed a single basic isoform (pI 8.8) in enzyme preparations from control and H(2)O(2)-treated cells. In contrast to this, three more acidic isoforms (pIs, 8.6, 8.0 and 7.3) were resolved in purified fractions from SNP-treated cells, suggesting post-translational modification of the enzyme by NO. Nevertheless, a decrease of GAPDH activity by H(2)O(2) and NO, mainly due to a decrease in its V(max) without apparent change in substrate affinity, was observed in vitro in the whole enzyme population. The increase of GAPDH protein level found in vivo suggests a cell response in order to compensate for the inhibitory effect on activity observed in the purified enzyme. This is the first report of NO- and H(2)O(2)-dependent effects on GAPDH of T. pyriformis, and identifies this key protein of central carbon metabolism as a physiological target of oxidative and nitrosative stress in this ciliated protozoan.
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Affiliation(s)
- Latifa Fourrat
- Laboratoire de Physiologie et Génétique moléculaire, Département de Biologie, Faculté des Sciences Aïn-Chock, Université Hassan-II, Km 8 route d'El Jadida, B.P. 5366 Mâarif, Casablanca, Morocco
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Hernandez-Ruiz L, Valverde F, Jimenez-Nuñez MD, Ocaña E, Sáez-Benito A, Rodríguez-Martorell J, Bohórquez JC, Serrano A, Ruiz FA. Organellar proteomics of human platelet dense granules reveals that 14-3-3zeta is a granule protein related to atherosclerosis. J Proteome Res 2007; 6:4449-57. [PMID: 17918986 DOI: 10.1021/pr070380o] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Dense granules, a type of platelet secretory organelle, are known to accumulate high concentrations of small molecules such as calcium, adenine nucleotides, serotonin, pyrophosphate, and polyphosphate. Protein composition of these granules has been obscure, however. In this paper, we use proteomics techniques to describe, for the first time, the soluble protein composition of platelet dense granules. We have isolated highly enriched human platelet dense granule fractions that have been analyzed using two proteomics methods. Using this approach, we have identified 40 proteins, and most of them, such as actin-associated proteins, glycolytic enzymes, and regulatory proteins, have not previously been related to the organelle. We have focused our efforts on studying 14-3-3zeta, a member of a conserved family of proteins that interact with hundreds of different proteins. We have demonstrated that 14-3-3zeta is localized mostly on dense granules and that it is secreted after platelet activation. As some proteins secreted from activated platelets could promote the development of atherosclerosis and thrombosis, we have studied the expression of 14-3-3zeta in sections of human abdominal aorta of patients with aneurysm, identifying it at the atherosclerotic plaques. Together, our results reveal new details of the composition of the platelet dense granule and suggest an extracellular function for 14-3-3zeta associated with atherosclerosis.
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Affiliation(s)
- Laura Hernandez-Ruiz
- Unidad de Investigacion, Hospital Universitario Puerta del Mar, Facultad de Medicina, Universidad de Cadiz, Cadiz, Spain
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Fourrat L, Iddar A, Valverde F, Serrano A, Soukri A. Cloning, gene expression and characterization of a novel bacterial NAD-dependent non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Neisseria meningitidis strain Z2491. Mol Cell Biochem 2007; 305:209-19. [PMID: 17619949 DOI: 10.1007/s11010-007-9545-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2007] [Accepted: 06/21/2007] [Indexed: 11/28/2022]
Abstract
Alignment of the amino acid sequence of some archaeal, bacterial and eukaryotic non-phosphorylating glyceraldehydes-3-phosphate dehydrogenases (GAPNs) and aldehyde dehydrogenases (ALDHs) with the sequence of a putative GAPN present in the genome of the Gram-negative bacterium Neisseria meningitidis strain Z2491 demonstrated the conservation of residues involved in the catalytic activity. The predicted coding sequence of the N. meningitidis gapN gene was cloned in Escherichia coli XL1-blue under the expression of an inducible promoter. The IPTG-induced GAPN was purified ca. 48-fold from E. coli cells using a procedure that sequentially employed conventional ammonium sulfate fractionation as well as anion-exchange and affinity chromatography. The purified recombinant enzyme was thoroughly characterized. The protein is a homotetramer with a 50-kDa subunit, exhibiting absolute specificity for NAD and a broad spectrum of aldehyde substrates. Isoelectric focusing analysis with the purified fraction showed the presence of an acidic polypeptide with an isoelectric point of 6.3. The optimum pH of the purified enzyme was between 9 and 10. Studies on the effect of increasing temperatures on the enzyme activity revealed an optimal value ca. 64 degrees C. Molecular phylogenetic data suggest that N. meningitidis GAPN has a closer relationship with archaeal GAPNs and glyceraldehyde dehydrogenases than with the typical NADP-specific GAPNs from Gram-positive bacteria and photosynthetic eukaryotes.
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Affiliation(s)
- Latifa Fourrat
- Laboratoire de Physiologie et Génétique moléculaire, Département de Biologie, Faculté des Sciences Aïn-Chock, Université Hassan-II, Casablanca, Morocco
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Iddar A, Valverde F, Assobhei O, Serrano A, Soukri A. Widespread occurrence of non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase among gram-positive bacteria. Int Microbiol 2005; 8:251-8. [PMID: 16562377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
The non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPDHN, NADP+-specific, EC 1.2.1.9) is present in green eukaryotes and some Streptococcus strains. The present report describes the results of activity and immunoblot analyses, which were used to generate the first survey of bacterial GAPDHN distribution in a number of Bacillus, Streptococcus and Clostridium strains. Putative gapN genes were identified after PCR amplification of partial 700-bp sequences using degenerate primers constructed from highly conserved protein regions. Alignment of the amino acid sequences of these fragments with those of known sequences from other eukaryotic and prokaryotic GAPDHNs, demonstrated the presence of conserved residues involved in catalytic activity that are not conserved in aldehyde dehydrogenases, a protein family closely linked to GAPDHNs. The results confirm that the basic structural features of the members of the GAPDHN family have been conserved throughout evolution and that no identity exists with phosphorylating GAPDHs. Furthermore, phylogenetic trees generated from multiple sequence alignments suggested a close relationship between plant and bacterial GAPDHN families.
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Affiliation(s)
- Abdelghani Iddar
- Enzymatic Engineering and Molecular Genetics Team, Faculty of Sciences Aïn-Chock, University Hassan-II, Casablanca, Morocco
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36
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Valverde F, Ortega JM, Losada M, Serrano A. Sugar-mediated transcriptional regulation of the Gap gene system and concerted photosystem II functional modulation in the microalga Scenedesmus vacuolatus. Planta 2005; 221:937-952. [PMID: 15830207 DOI: 10.1007/s00425-005-1501-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2004] [Accepted: 02/02/2005] [Indexed: 05/24/2023]
Abstract
Partial cDNAs corresponding to the GapA, GapC and GapN genes that encode the three different glyceraldehyde-3-phosphate dehydrogenases (GAPDHs) of the green microalga Scenedesmus vacuolatus SAG 211-8b have been cloned and characterized. Northern blot experiments, as well as immunoblots and activity measurements, demonstrate a differential regulation by sugars of the components of the algal Gap gene system. Addition of glucose or other metabolizable sugars to photoautotrophic cultures promoted a drastic repression of the GapA gene and depletion to negligible levels of the corresponding GAPDHA, a chloroplastic protein involved in photosynthetic CO2 assimilation. By contrast, expression of the GapC and GapN genes encoding their cytosolic counterparts involved in glycolysis was enhanced. However, no down-regulation of the GapA gene by glucose took place in the dark, indicating that the observed effect is associated with sugar assimilation in the light. Likewise, glucose promoted in illuminated algal cultures a severe decrease of photosystem II functionality, estimated by O2 evolution activity, thermoluminescence emission and D1 protein level, while again, no effect was observed in the dark. On the basis of the correlation found between photosystem II performance and sugar transcriptional regulation of the GapA gene, a scenario of sugar-mediated regulation of photosynthetic metabolism in microalgae is proposed that will help to explain the so-called glucose bleaching effect in photosynthetic eukaryotes.
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Affiliation(s)
- Federico Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, 41092, Seville, Spain
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37
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Abstract
Many plants flower in response to seasonal fluctuations in day length. The CONSTANS (CO) gene of Arabidopsis promotes flowering in long days. Flowering is induced when CO messenger RNA expression coincides with the exposure of plants to light. However, how this promotes CO activity is unknown. We show that light stabilizes nuclear CO protein in the evening, whereas in the morning or in darkness the protein is degraded by the proteasome. Photoreceptors regulate CO stability and act antagonistically to generate daily rhythms in CO abundance. This layer of regulation refines the circadian rhythm in CO messenger RNA and is central to the mechanism by which day length controls flowering.
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Affiliation(s)
- Federico Valverde
- Max Planck Institute for Plant Breeding, Carl-von-Linne Weg 10, D-50829 Cologne, Germany
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38
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Jiménez D, López-Mascaraque L, de Carlos JA, Valverde F. Further studies on cortical tangential migration in wild type and Pax-6 mutant mice. ACTA ACUST UNITED AC 2004; 31:719-28. [PMID: 14501209 DOI: 10.1023/a:1025751914372] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
In this study we present new data concerning the tangential migration from the medial and lateral ganglionic eminences (MGE and LGE) to the cerebral cortex during development. We have used Calbindin as a useful marker to follow the itinerary of tangential migratory cells during early developmental stages in wild-type and Pax-6 homozygous mutant mice. In the wild-type mice, at early developmental stages, migrating cells advance through the intermediate zone (IZ) and preplate (PP). At more advanced stages, migrating cells were present in the subplate (SP) and cortical plate (CP) to reach the entire developing cerebral cortex. We found that, in the homozygous mutant mice (Pax-6(Sey-Neu)/Pax-6(Sey-Neu)), this tangential migration is severely affected at early developmental stages: migrating cells were absent in the IZ, which were only found some days later, suggesting that in the mutant mice, there is a temporal delay in tangential migration. We have also defined some possible mechanisms to explain certain migratory routes from the basal telencephalon to the cerebral cortex. We describe the existence of two factors, which we consider to be essential for the normal migration; the first one is the cell adhesion molecule PSA-NCAM, whose role in other migratory systems is well known. The second factor is Robo-2, whose expression delimits a channel for the passage of migratory cells from the basal telencephalon to the cerebral cortex.
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Affiliation(s)
- D Jiménez
- Departamento de Neurobiología del Desarrollo, Instituto Cajal (CSIC), Avenida del Doctor Arce 37, 28002 Madrid, Spain
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39
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Abstract
Report on the association of the psoriasis and vasculitis are a very infrequent in the literature. Such an association as been described in extensive psoriasis and arthropathy psoriasis. In this paper we described two cases in which psoriasis, vasculitis and nephropathy are present together. In both cases the association might be produced by methotrexate. In both cases methotrexate is possible uleashing.
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Affiliation(s)
- J C Moreno
- Department of Dermatology, Reina Sofía University Hospital, Córdoba, Spain.
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40
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Valverde F. [The olfactory bulb as a model for experimental studies]. Neurologia 2003; 18:177-86. [PMID: 12721862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023] Open
Abstract
The olfactory bulb represents a model for several research works carried out in our laboratory. Several details concerning structure, cell varieties and connections have been described. Special attention should be given to the ensheathing glia which accompanies olfactory axons, it being responsible for its plasticity and regeneration, as well as intervening in glomerular formation and their specificity. The olfactory system also represents a good model for the study of certain developmental aspects of the nervous system, such as the formation of nerve tracts. The lateral olfactory tract extends into the basal telencephalon and its development is supported by the existence of pre-existing routes and several attractive or repulsive factors. Its development requires complex molecular interactions in combination with several signalling influences. Pax6 is a transcription factor required for brain development. Nasal structures and eyes are absent in the homozygous mutant mice. In this mutant we have described the presence of one particular structure which could be a prospective olfactory bulb. Specific cell markers have been used to demonstrate that this structure shows many structural characteristics of the olfactory bulb. These observations favor the hypothesis of the existence of specific patterns delimiting specific functional domains in absence of their proper afferent fibers.
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Affiliation(s)
- F Valverde
- Instituto de Neurología, Santiago Ramón y Cajal, Madrid, Spain.
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41
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Iddar A, Valverde F, Serrano A, Soukri A. Purification of recombinant non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Streptococcus pyogenes expressed in E. coli. Mol Cell Biochem 2003; 247:195-203. [PMID: 12841648 DOI: 10.1023/a:1024112027440] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Streprococcus pyogenes gapN was cloned and expressed by functional complementation of the Escherichia gap mutant W3CG. The IPTG-induced NADP non-phosphorylating GAPDH (GAPN) has been purified about 75.4 fold from E. coli cells, using a procedure involving conventional ammonium sulfate fractionation, anion-exchange chromatography, hydrophobic chromatography and hydroxyapatite chromatography. The purified protein was characterised: it's an homotetrameric structure with a native molecular mass of 224 kDa, have an acid pI of 4.9 and optimum pH of 8.5. Studies on the effect of assay temperature on enzyme activity revealed an optimal value of about 60 degrees C with activation energy of 51 KJ mole(-1). The apparent Km values for NADP and D-G3P or DL-G3P were estimated to be 0.385 +/- 0.05 and 0.666 +/- 0.1 mM, respectively and the Vmax of the purified protein was estimated to be 162.5 U mg(-1). The S. pyogenes GAPN was markedly inhibited by sulfydryl-modifying reagent iodoacetamide, these results suggest the participation of essential sulfydryl groups in the catalytic activity.
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Affiliation(s)
- Abdelghani Iddar
- Laboratoire de BBCM, Département de Biologie, Faculté des Sciences Aïn-Chock, Université Hassan-II, Mâarif, Casablanca, Morocco
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42
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Moreno JC, Valverde F, Martinez F, Vélez A, Torres A, Fanego J, Ocaña MS. Bullous scleroderma-like changes in chronic graft-versus-host disease. J Eur Acad Dermatol Venereol 2003; 17:200-3. [PMID: 12705752 DOI: 10.1046/j.1468-3083.2003.00606.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Cutaneous graft-versus-host disease (GVHD) is the most common clinical setting for GVHD after bone marrow transplantation. Chronic cutaneous GVHD is categorized according to the type of skin lesions into lichenoid and sclerodermoid variants, but bullous scleroderma-like changes are exceptional. Recently, we studied a patient with these alterations. This is the second case described in the literature.
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Affiliation(s)
- J C Moreno
- Department of Dermatology, Hospital Universitario Reina Sofia, C/Av. Menendez Pidal s/n, 14007 Córdoba, Spain.
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43
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Hojas R, Villegas A, Ropero P, Valverde F, Nogales A, González FA, José C, Villar L, García C. Two new mutations in cis on (G)gamma chain of fetal hemoglobin: Hb F-Madrid [G gamma 50(D1)Ser-->Cys] and [G gamma 75(E19)Ile-->Thr]. Ann Hematol 2003; 82:181-3. [PMID: 12634953 DOI: 10.1007/s00277-002-0598-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2002] [Accepted: 11/19/2002] [Indexed: 11/25/2022]
Abstract
We describe a new structural hemoglobin variant of (G)gamma with two amino acid replacements in cis found in the umbilical cord blood of a neonate in Madrid, Spain. The substitutions were identified on exon 2 of the (G)gamma globin gene, at codon 50 (T CT-->T GT) and at codon 75 (A TA-->A CA). We have named it Hb F-Madrid. The father of the propositus was the carrier of the same (G)gamma chain variant and, moreover, molecular study of alpha genes revealed the loss of an alpha gene (-alpha(3.7)/alpha alpha) both in the propositus and his mother.
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Affiliation(s)
- R Hojas
- Servicio de Hematología y Hemoterapia, Hospital Clinico San Carlos, Facultad de Medicina, Universidad Complutense, c/o Prof. Martín Lagos s/n, 28040 Madrid, Spain
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44
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Hepworth SR, Valverde F, Ravenscroft D, Mouradov A, Coupland G. Antagonistic regulation of flowering-time gene SOC1 by CONSTANS and FLC via separate promoter motifs. EMBO J 2002; 21:4327-37. [PMID: 12169635 PMCID: PMC126170 DOI: 10.1093/emboj/cdf432] [Citation(s) in RCA: 298] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Flowering in Arabidopsis is controlled by endogenous and environmental signals relayed by distinct genetic pathways. The MADS-box flowering-time gene SOC1 is regulated by several pathways and is proposed to co-ordinate responses to environmental signals. SOC1 is directly activated by CONSTANS (CO) in long photoperiods and is repressed by FLC, a component of the vernalization (low-temperature) pathway. We show that in transgenic plants overexpressing CO and FLC, these proteins regulate flowering time antagonistically and FLC blocks transcriptional activation of SOC1 by CO. A series of SOC1::GUS reporter genes identified a 351 bp promoter sequence that mediates activation by CO and repression by FLC. A CArG box (MADS-domain protein binding element) within this sequence was recognized specifically by FLC in vitro and mediated repression by FLC in vivo, suggesting that FLC binds directly to the SOC1 promoter. We propose that CO is recruited to a separate promoter element by a DNA-binding factor and that activation by CO is impaired when FLC is bound to an adjacent CArG motif.
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Affiliation(s)
- Shelley R. Hepworth
- John Innes Centre, Colney Lane, Norwich NR4 7UH, UK and Max-Planck-Institut für Züchtungsforschung, Carl-von-Linné-Weg 10,D-50829 Köln, Germany Present address: Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada Corresponding author e-mail:
| | - Federico Valverde
- John Innes Centre, Colney Lane, Norwich NR4 7UH, UK and Max-Planck-Institut für Züchtungsforschung, Carl-von-Linné-Weg 10,D-50829 Köln, Germany Present address: Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada Corresponding author e-mail:
| | - Dean Ravenscroft
- John Innes Centre, Colney Lane, Norwich NR4 7UH, UK and Max-Planck-Institut für Züchtungsforschung, Carl-von-Linné-Weg 10,D-50829 Köln, Germany Present address: Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada Corresponding author e-mail:
| | - Aidyn Mouradov
- John Innes Centre, Colney Lane, Norwich NR4 7UH, UK and Max-Planck-Institut für Züchtungsforschung, Carl-von-Linné-Weg 10,D-50829 Köln, Germany Present address: Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada Corresponding author e-mail:
| | - George Coupland
- John Innes Centre, Colney Lane, Norwich NR4 7UH, UK and Max-Planck-Institut für Züchtungsforschung, Carl-von-Linné-Weg 10,D-50829 Köln, Germany Present address: Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada Corresponding author e-mail:
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45
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Iddar A, Valverde F, Serrano A, Soukri A. Expression, purification, and characterization of recombinant nonphosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum. Protein Expr Purif 2002; 25:519-26. [PMID: 12182834 DOI: 10.1016/s1046-5928(02)00032-3] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Clostridium acetobutylicum gapN was cloned and expressed in Escherichia coli BL-21. The IPTG-induced nonphosphorylating NADP-dependent GAPDH (GAPN) has been purified about 34-fold from E. coli cells and its physical and kinetic properties were investigated. The purification method consisted of a rapid and straightforward procedure involving anion-exchange and hydroxyapatite chromatographies. The purified protein is an homotetrameric of 204kDa exhibiting absolute specificity for NADP. Chromatofocusing analysis showed the presence of only one acidic GAPN isoform with an acid isoelectric point of 4.2. The optimum pH of purified enzyme was 8.2. Studies on the effect of assay temperature on enzyme activity revealed an optimal value of about 65 degrees C with activation energy of 18KJmol(-1). The apparent K(m) values for NADP and D-glyceraldehyde-3-phosphate (D-G3P) or DL-G3P were estimated to be 0.200+/-0.05 and 0.545+/-0.1 mM, respectively. No inhibition was observed with L-D3P. The V(max) of the purified protein was estimated to be 78.8 U mg(-1). The Cl. acetobutylicum GAPN was markedly inhibited by sulfhydryl-modifying reagent iodoacetamide, these results suggest the participation of essential sulfhydryl groups in the catalytic activity.
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Affiliation(s)
- Abdelghani Iddar
- Laboratoire de BBCM, Département de Biologie, Faculté des Sciences Aïn-Chock, Université Hassan-II, Km 8 route d'El Jadida, B.P. 5366 Mâarif, Casablanca, Morocco
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46
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Valverde F. [Structure of the cerebral cortex. Intrinsic organization and comparative analysis of the neocortex]. Rev Neurol 2002; 34:758-80. [PMID: 12080498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
We review our present knowledge on the intrinsic organization of the neocortex based on studies carried out with the Golgi method in several mammalian species. An outline is presented on certain general aspects of the termination of specific afferent fibers in layer IV in insectivora, rodents, carnivora and primates. The principal components of the cerebral cortex have been classified in two broad types: pyramidal cells, which account for nearly 70% of the total population, and intrinsic neurons. We review different morphological characteristics of pyramidal cells and intrinsic neurons with a full description of cell varieties, dendritic morphology and several aspects of synaptic connectivity of intrinsic neurons in comparison between different species. Special attention has been paid to the description of spinous stellate cells which seems unique for a given animal species. We have reviewed intrinsic cortical circuits linking several neocortical layers, the distribution of dendritic plexuses, and the excitatory and inhibitory synaptic connections established between various neuronal categories. We finally review modern concepts of functional neocortical architecture based on the modular organization of the cerebral cortex, concluding that the cerebral cortex is rather uniform at en elementary level but the differences appear substantial when the comparison is made between different species.
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Affiliation(s)
- F Valverde
- Instituto de Neurobiología; Instituto de Neurobiología Santiago Ramón y Cajal (CSIC), Madrid, España.
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47
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Junca J, Villegas A, Ropero P, González FA, Motos A, Valverde F. Characterization of a new hemoglobin variant: Hb Badalona (beta31[B13]Leu-->Val). Ann Hematol 2002; 81:179-81. [PMID: 11976817 DOI: 10.1007/s00277-002-0447-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2001] [Accepted: 01/28/2002] [Indexed: 10/27/2022]
Abstract
Hemoglobin (Hb) Badalona was identified in a 35-year-old Spanish female and two other family members. All affected subjects presented erythrocytosis and increased oxygen affinity (P(50): 21 mmHg). Hemoglobinopathy was not detected with electrophoretic methods. It was, however, separated and quantified by cation exchange and reverse-phase high-performance liquid chromatography. Hb Badalona accounted for 35% of the total Hb. No significant clinical symptoms were found to be related to this hemoglobinopathy. This is the first case of a Leu-->Val replacement at position beta31(B13) reported in the world literature.
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Affiliation(s)
- J Junca
- Servicio de Hematología, Hospital Trias i Pujol, Badalona, Barcelona, Spain
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48
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Valverde F, Peleato ML, Fillat MF, Gómez-Moreno C, Losada M, Serrano A. Simultaneous occurrence of two different glyceraldehyde-3-phosphate dehydrogenases in heterocystous N(2)-fixing cyanobacteria. Biochem Biophys Res Commun 2001; 283:356-63. [PMID: 11327708 DOI: 10.1006/bbrc.2001.4782] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Enzyme activity determinations and Western and Northern blot analyses have shown the presence of two catalytically different glyceraldehyde-3-phosphate dehydrogenases (GAPDH) in both vegetative cells and heterocysts of several N(2)-fixing Anabaena strains: (a) the gap2-encoded NAD(P)-dependent GAPDH2 (EC 1.2.1.59), the enzyme involved in the photosynthetic carbon assimilation pathway, which is present at higher levels in vegetative cells, and (b) the gap3-encoded NAD-dependent GAPDH3 (EC 1.2.1.12), presumably involved in carbohydrate anabolism and catabolism, which is the predominant GAPDH in heterocysts. In contrast, the gap1-encoded GAPDH1, which is the other NAD-dependent cyanobacterial GAPDH, is virtually absent in both cell types. These findings are discussed in the context of carbon metabolism of heterocystous N(2)-fixing cyanobacteria.
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Affiliation(s)
- F Valverde
- Instituto de Bioquímica Vegetal y Fotosíntesis, Universidad de Sevilla-CSIC, Seville, Spain
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49
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Suárez-López P, Wheatley K, Robson F, Onouchi H, Valverde F, Coupland G. CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 2001; 410:1116-20. [PMID: 11323677 DOI: 10.1038/35074138] [Citation(s) in RCA: 851] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Flowering is often triggered by exposing plants to appropriate day lengths. This response requires an endogenous timer called the circadian clock to measure the duration of the day or night. This timer also controls daily rhythms in gene expression and behavioural patterns such as leaf movements. Several Arabidopsis mutations affect both circadian processes and flowering time; but how the effect of these mutations on the circadian clock is related to their influence on flowering remains unknown. Here we show that expression of CONSTANS (CO), a gene that accelerates flowering in response to long days, is modulated by the circadian clock and day length. Expression of a CO target gene, called FLOWERING LOCUS T (FT), is restricted to a similar time of day as expression of CO. Three mutations that affect circadian rhythms and flowering time alter CO and FT expression in ways that are consistent with their effects on flowering. In addition, the late flowering phenotype of such mutants is corrected by overexpressing CO. Thus, CO acts between the circadian clock and the control of flowering, suggesting mechanisms by which day length regulates flowering time.
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Affiliation(s)
- P Suárez-López
- John Innes Centre, Norwich Research Park, Colney Lane, Norwich NR4 7UH, UK
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50
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Jiménez D, García C, de Castro F, Chédotal A, Sotelo C, de Carlos JA, Valverde F, López-Mascaraque L. Evidence for intrinsic development of olfactory structures in Pax-6 mutant mice. J Comp Neurol 2000; 428:511-26. [PMID: 11074448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
It has been reported that the arrival of primary olfactory axons is required to induce the development of the olfactory bulb (OB). On the other hand, the Sey(Neu)/Sey(Neu) mutant mouse (Small eye) has been previously described as a model for the absence of olfactory bulbs, owing to the lack of olfactory epithelium (OE). In the present report, we take advantage of this mutant and study a neural structure in the rostral pole of the telencephalon that phenotypically resembles the prospective OB. We named this formation olfactory bulb-like structure (OBLS). We also report the occurrence, in the mutants, of small epithelial vesicles in the malformed craneofacial pits, resembling an atrophic OE, although a mature olfactory nerve was not identified. Axonal tracing, birthdating, immunohistochemistry, and in situ hybridization using antibodies and probes expressed in the olfactory system, indicated that two distinct structures observed in the OBLS correspond to the main and accessory olfactory bulbs of the control mouse. We propose that the OBLS has developed independently of the external influences exerted by the olfactory nerve. The presence of a prospective OB in the mutants, without intervening olfactory fibers, suggests that intrinsic factors could define brain territories even in absence of the proper afferent innervation. The intrinsic mechanisms and environmental cues in the telencephalon could be sufficient to promote axonogenesis in the projection neurons of the OB and guide their axons in a lateral prospective tract, in the absence of olfactory axons.
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Affiliation(s)
- D Jiménez
- Instituto Cajal-C.S.I.C., E-28002-Madrid, Spain
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