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Slate ML, Antoninka A, Bailey L, Berdugo MB, Callaghan DA, Cárdenas M, Chmielewski MW, Fenton NJ, Holland-Moritz H, Hopkins S, Jean M, Kraichak BE, Lindo Z, Merced A, Oke T, Stanton D, Stuart J, Tucker D, Coe KK. Impact of changing climate on bryophyte contributions to terrestrial water, carbon, and nitrogen cycles. New Phytol 2024. [PMID: 38659154 DOI: 10.1111/nph.19772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 03/22/2024] [Indexed: 04/26/2024]
Abstract
Bryophytes, including the lineages of mosses, liverworts, and hornworts, are the second-largest photoautotroph group on Earth. Recent work across terrestrial ecosystems has highlighted how bryophytes retain and control water, fix substantial amounts of carbon (C), and contribute to nitrogen (N) cycles in forests (boreal, temperate, and tropical), tundra, peatlands, grasslands, and deserts. Understanding how changing climate affects bryophyte contributions to global cycles in different ecosystems is of primary importance. However, because of their small physical size, bryophytes have been largely ignored in research on water, C, and N cycles at global scales. Here, we review the literature on how bryophytes influence global biogeochemical cycles, and we highlight that while some aspects of global change represent critical tipping points for survival, bryophytes may also buffer many ecosystems from change due to their capacity for water, C, and N uptake and storage. However, as the thresholds of resistance of bryophytes to temperature and precipitation regime changes are mostly unknown, it is challenging to predict how long this buffering capacity will remain functional. Furthermore, as ecosystems shift their global distribution in response to changing climate, the size of different bryophyte-influenced biomes will change, resulting in shifts in the magnitude of bryophyte impacts on global ecosystem functions.
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Affiliation(s)
- Mandy L Slate
- Department of Evolution, Ecology & Organismal Biology, The Ohio State University, Columbus, OH, 43210, USA
| | - Anita Antoninka
- School of Forestry, Northern Arizona University, Flagstaff, AZ, 86005, USA
| | - Lydia Bailey
- School of Forestry, Northern Arizona University, Flagstaff, AZ, 86005, USA
| | - Monica B Berdugo
- Plant Ecology and Geobotany, Department of Biology, University of Marburg, Karl-von-Frisch Str. 8, 35043, Marburg, Germany
| | - Des A Callaghan
- Bryophyte Surveys Ltd, Almondsbury, South Gloucestershire, BS32 4DU, UK
| | - Mariana Cárdenas
- Department of Ecology Evolution and Behavior, University of Minnesota, Saint Paul, MN, 55108, USA
| | | | - Nicole J Fenton
- Université du Québec en Abitibi-Témiscamingue, Rouyn-Noranda, QC, J9X 5E4, Canada
| | - Hannah Holland-Moritz
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, NH, 03824, USA
| | - Samantha Hopkins
- Department of Biology, University of Western Ontario, London, ON, N6A 3K7, Canada
| | - Mélanie Jean
- Université de Moncton, Moncton, NB, E1A 3E9, Canada
| | - Bier Ekaphan Kraichak
- Department of Botany, Faculty of Science, Kasetsart University in Bangkok, Bangkok, 10900, Thailand
| | - Zoë Lindo
- Department of Biology, University of Western Ontario, London, ON, N6A 3K7, Canada
| | - Amelia Merced
- Department of Biology, University of Puerto Rico Río Piedras, San Juan, PR, 00925, USA
| | - Tobi Oke
- Wildlife Conservation Society & School of Environment & Sustainability, University of Saskatchewan, Saskatoon, SK, S7N 5C8, Canada
| | - Daniel Stanton
- Department of Ecology Evolution and Behavior, University of Minnesota, Saint Paul, MN, 55108, USA
| | - Julia Stuart
- College of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, 49931, USA
- Mountain Planning Service Group, US Forest Service, Lakewood, CO, 80401, USA
| | - Daniel Tucker
- School of Environmental Studies, University of Victoria, Victoria, BC, V8P 5C2, Canada
| | - Kirsten K Coe
- Department of Biology, Middlebury College, Middlebury, VT, 05753, USA
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Herndon E, Richardson J, Carrell AA, Pierce E, Weston D. Sulfur speciation in Sphagnum peat moss modified by mutualistic interactions with cyanobacteria. New Phytol 2024; 241:1998-2008. [PMID: 38135655 DOI: 10.1111/nph.19476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 11/21/2023] [Indexed: 12/24/2023]
Abstract
Peat moss (Sphagnum spp.) develops mutualistic interactions with cyanobacteria by providing carbohydrates and S compounds in exchange for N-rich compounds, potentially facilitating N inputs into peatlands. Here, we evaluate how colonization of Sphagnum angustifolium hyaline cells by Nostoc muscorum modifies S abundance and speciation at the scales of individual cells and across whole leaves. For the first time, S K-edge X-ray Absorption Spectroscopy was used to identify bulk and micron-scale S speciation across isolated cyanobacteria colonies, and in colonized and uncolonized leaves. Uncolonized leaves contained primarily reduced organic S and oxidized sulfonate- and sulfate-containing compounds. Increasing Nostoc colonization resulted in an enrichment of S and changes in speciation, with increases in sulfate relative to reduced S and sulfonate. At the scale of individual hyaline cells, colonized cells exhibited localized enrichment of reduced S surrounded by diffuse sulfonate, similar to observations of cyanobacteria colonies cultured in the absence of leaves. We infer that colonization stimulates plant S uptake and the production of sulfate-containing metabolites that are concentrated in stem tissues. Sulfate compounds that are produced in response to colonization become depleted in colonized cells where they may be converted into reduced S metabolites by cyanobacteria.
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Affiliation(s)
- Elizabeth Herndon
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
| | | | - Alyssa A Carrell
- Biological Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
| | - Eric Pierce
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
| | - David Weston
- Biological Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
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Wang Y, Xue D, Chen X, Qiu Q, Chen H. Structure and Functions of Endophytic Bacterial Communities Associated with Sphagnum Mosses and Their Drivers in Two Different Nutrient Types of Peatlands. Microb Ecol 2024; 87:47. [PMID: 38407642 PMCID: PMC10896819 DOI: 10.1007/s00248-024-02355-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Accepted: 01/29/2024] [Indexed: 02/27/2024]
Abstract
Sphagnum mosses are keystone plant species in the peatland ecosystems that play a crucial role in the formation of peat, which shelters a broad diversity of endophytic bacteria with important ecological functions. In particular, methanotrophic and nitrogen-fixing endophytic bacteria benefit Sphagnum moss hosts by providing both carbon and nitrogen. However, the composition and abundance of endophytic bacteria from different species of Sphagnum moss in peatlands of different nutrient statuses and their drivers remain unclear. This study used 16S rRNA gene amplicon sequencing to examine endophytic bacterial communities in Sphagnum mosses and measured the activity of methanotrophic microbial by the 13C-CH4 oxidation rate. According to the results, the endophytic bacterial community structure varied among Sphagnum moss species and Sphagnum capillifolium had the highest endophytic bacterial alpha diversity. Moreover, chlorophyll, phenol oxidase, carbon contents, and water retention capacity strongly shaped the communities of endophytic bacteria. Finally, Sphagnum palustre in Hani (SP) had a higher methane oxidation rate than S. palustre in Taishanmiao. This result is associated with the higher average relative abundance of Methyloferula an obligate methanotroph in SP. In summary, this work highlights the effects of Sphagnum moss characteristics on the endophytic bacteriome. The endophytic bacteriome is important for Sphagnum moss productivity, as well as for carbon and nitrogen cycles in Sphagnum moss peatlands.
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Affiliation(s)
- Yue Wang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, No. 9, Section 4, South Renmin Road, Chengdu, 610041, China
- Zoige Peatland and Global Change Research Station, Chinese Academy of Sciences, Hongyuan, 624400, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Dan Xue
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, No. 9, Section 4, South Renmin Road, Chengdu, 610041, China.
- Zoige Peatland and Global Change Research Station, Chinese Academy of Sciences, Hongyuan, 624400, China.
| | - Xuhui Chen
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, No. 9, Section 4, South Renmin Road, Chengdu, 610041, China
- Zoige Peatland and Global Change Research Station, Chinese Academy of Sciences, Hongyuan, 624400, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qing Qiu
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, No. 9, Section 4, South Renmin Road, Chengdu, 610041, China
| | - Huai Chen
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, No. 9, Section 4, South Renmin Road, Chengdu, 610041, China.
- Zoige Peatland and Global Change Research Station, Chinese Academy of Sciences, Hongyuan, 624400, China.
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Hupperts SF, Islam KS, Gundale MJ, Kardol P, Sundqvist MK. Warming influences carbon and nitrogen assimilation between a widespread Ericaceous shrub and root-associated fungi. New Phytol 2024; 241:1062-1073. [PMID: 37950517 DOI: 10.1111/nph.19384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 10/19/2023] [Indexed: 11/12/2023]
Abstract
High-latitude ecosystems are warming faster than other biomes and are often dominated by a ground layer of Ericaceous shrubs, which can respond positively to warming. The carbon-for-nitrogen (C-for-N) exchange between Ericaceous shrubs and root-associated fungi may underlie shrub responses to warming, but has been understudied. In a glasshouse setting, we examined the effects of warming on the C-for-N exchange between the Ericaceous shrub Empetrum nigrum ssp. hermaphroditum and its root-associated fungi. We applied different 13 C and 15 N isotope labels, including a simple organic N form (glycine) and a complex organic N form (moss litter) and quantified their assimilation into soil, plant biomass, and root fungal biomass pools. We found that warming lowered the amount of 13 C partitioned to root-associated fungi per unit of glycine 15 N assimilated by E. nigrum, but only in the short term. By contrast, warming increased the amount of 13 C partitioned to root-associated fungi per unit of moss 15 N assimilated by E. nigrum. Our study suggests that climate warming affects the short-term exchange of C and N between a widespread Ericaceous shrub and root-associated fungi. Furthermore, while most isotope tracing studies use labile N sources, we demonstrate that a ubiquitous recalcitrant N source may produce contrasting results.
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Affiliation(s)
- Stefan F Hupperts
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, 901 83, Sweden
| | - Kazi Samiul Islam
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, 901 83, Sweden
| | - Michael J Gundale
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, 901 83, Sweden
| | - Paul Kardol
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, 901 83, Sweden
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences (SLU), Uppsala, 750 07, Sweden
| | - Maja K Sundqvist
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, 901 83, Sweden
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Coe K, Carter B, Slate M, Stanton D. Moss functional trait ecology: Trends, gaps, and biases in the current literature. Am J Bot 2024; 111:e16288. [PMID: 38366744 DOI: 10.1002/ajb2.16288] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 12/20/2023] [Accepted: 12/21/2023] [Indexed: 02/18/2024]
Abstract
Functional traits are critical tools in plant ecology for capturing organism-environment interactions based on trade-offs and making links between organismal and ecosystem processes. While broad frameworks for functional traits have been developed for vascular plants, we lack the same for bryophytes, despite an escalation in the number of studies on bryophyte functional trait in the last 45 years and an increased recognition of the ecological roles bryophytes play across ecosystems. In this review, we compiled data from 282 published articles (10,005 records) that focused on functional traits measured in mosses and sought to examine trends in types of traits measured, capture taxonomic and geographic breadth of trait coverage, reveal biases in coverage in the current literature, and develop a bryophyte-function index (BFI) to describe the completeness of current trait coverage and identify global gaps to focus research efforts. The most commonly measured response traits (those related to growth/reproduction in individual organisms) and effect traits (those that directly affect community/ecosystem scale processes) fell into the categories of morphology (e.g., leaf area, shoot height) and nutrient storage/cycling, and our BFI revealed that these data were most commonly collected from temperate and boreal regions of Europe, North America, and East Asia. However, fewer than 10% of known moss species have available functional trait information. Our synthesis revealed a need for research on traits related to ontogeny, sex, and intraspecific plasticity and on co-measurement of traits related to water relations and bryophyte-mediated soil processes.
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Affiliation(s)
- Kirsten Coe
- Department of Biology, Middlebury, VT, 05753, USA
| | - Benjamin Carter
- Department of Biological Sciences, San Jose State University, San Jose, CA, 95192, USA
| | - Mandy Slate
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA
- Present address: Department of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, 43210, USA
| | - Daniel Stanton
- Department of Ecology Evolution and Behavior, University of Minnesota, Saint Paul, MN, 55108, USA
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Sheng X, Qiying C, Shifeng S, Liu Yizhen, Bicai G, Lan W, Gang G. The trait co-variation regulates the response of bryophytes to nitrogen deposition: A meta-analysis. Environ Pollut 2023; 339:122739. [PMID: 37852313 DOI: 10.1016/j.envpol.2023.122739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 10/11/2023] [Accepted: 10/12/2023] [Indexed: 10/20/2023]
Abstract
The nitrogen deposition has the potential to alter the trait composition of plant communities by affecting the fitness and physiological adaptation of species, consequently exerting an influence on ecosystem processes. Despite the importance of bryophytes in nutrient and carbon dynamics across different ecosystems, there is a lack of research examining the relationship between nitrogen deposition and the co-variation of bryophyte traits. To address this gap, a meta-analysis was conducted using data from 27 independent studies to investigate potential associations between trait co-variation of bryophytes and nitrogen deposition. The results revealed that interspecific variability regulates the influence of nitrogen deposition on bryophytes by affecting trait co-variation. Multiple correspondence analysis identified six combinations of closely related traits. For example, species with unbranched main stems frequently exhibit robust leaf midribs, leading to leaf wrinkling and leaf clasping around the stem as a response to water loss. Some weft or mat species tend to obtain resources (nitrogen) through their scale hairs on the main stem. Some species with narrow leaves require leaf teeth to maintain a normal leaf shape. The subgroup analyses indicated that certain traits, including unbranched main stem, changes in leaf morphology, robust leaf midrib, main stem without scale hairs, narrow leaf, leaf margin with teeth, undeveloped apophysis, and erect capsule minimize interaction with pollutants and represent a resource strategy. Conversely, functional traits representing a resource acquisition strategy, such as branched main stem, no changes in leaf morphology, short and weak leaf midrib, main stem with scale hairs, broad leaf, leaf margin without teeth, developed apophysis, and non-erect capsule increase pollutant exposure. Overall, our results suggest that anthropogenic global change may significantly impact bryophytes due to changes in their individual physiology and colony ecological indicators caused by increased nitrogen deposition.
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Affiliation(s)
- Xu Sheng
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Cai Qiying
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Sun Shifeng
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Liu Yizhen
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Guan Bicai
- School of Life Sciences, Nanchang University, Nanchang, 330031, China
| | - Wu Lan
- School of Life Sciences, Nanchang University, Nanchang, 330031, China; Key Laboratory of Poyang Lake Environment and Resource Utilization Ministry of Education, Nanchang University, Nanchang, 330031, China
| | - Ge Gang
- School of Life Sciences, Nanchang University, Nanchang, 330031, China; Key Laboratory of Poyang Lake Environment and Resource Utilization Ministry of Education, Nanchang University, Nanchang, 330031, China.
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Li M, Li J, Deng L, Zhao Z, Luo C, Luo F, Wang H, Yang J. Species of associated bryophytes and their effects on the yield and quality of Dendrobium nobile. BMC Plant Biol 2023; 23:516. [PMID: 37880597 PMCID: PMC10601116 DOI: 10.1186/s12870-023-04503-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 10/03/2023] [Indexed: 10/27/2023]
Abstract
BACKGROUND Dendrobium nobile has unique growth environment requirements, and unstable yields and high management costs are the key factors restricting the development of its imitation wild cultivation industry. The present study explored the effects of different associated bryophyte species on the yield and quality of D. nobile to clarify the dominant bryophyte species associated with D. nobile and to provide a scientific basis for the rational cultivation and quality evaluation of D. nobile. RESULTS The growth of D. nobile was closely related to the microenvironment of the Danxia stone, and the different associated bryophytes had different effects on D. nobile growth. There was a rich variety of bryophytes associated with D. nobile, with a total of 15 families, 24 genera and 31 species of bryophytes identified in the study area, including 13 families, 22 genera and 29 species of mosses and 2 families, 2 genera and 2 species of liverworts, and mosses predominated in the association with D. nobile. Usually, 3-9 species of bryophytes were growing in association with D. nobile, among which associations of 5-6 bryophytes species were more common, and the bryophytes associated with D. nobile were only related to the species to which they belonged. The dry matter accumulation, quality and mineral content of D. nobile differed significantly among different bryophyte species. The coefficients of variation of dry matter accumulation, dendrobine content and content of 11 mineral elements of D. nobile in the 35 sample quadrats were 25.00%, 21.08%, and 11.33-57.96%, respectively. The biomass, dendrobine content and mineral content of D. nobile were analysed by principal component analysis (PCA) and membership function. The results showed that each evaluation method initially screened Trachycystis microphylla and Leucobryum juniperoideum as the dominant associated bryophytes in the preliminary identification analysis, and the frequency of occurrence and coverage of the two bryophytes were significantly higher than those of the remaining bryophytes. It was determined that T. microphylla and L. juniperoideum were the dominant associated bryophytes. CONCLUSIONS There is a rich variety of bryophytes associated with D. nobile. The yield and quality of D. nobile differed significantly among different bryophyte species. T. microphylla and L. juniperoideum were the dominant associated bryophytes, and were the two bryophytes associated with D. nobile through mixed growth.
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Affiliation(s)
- Mingsong Li
- College of Agriculture, Guizhou University, Guiyang, 550025, China
- Key Laboratory of Breeding and Cultivation of Medicinal Plants of Guizhou Province, Guiyang, 550025, China
| | - Jinling Li
- College of Agriculture, Guizhou University, Guiyang, 550025, China.
- Key Laboratory of Breeding and Cultivation of Medicinal Plants of Guizhou Province, Guiyang, 550025, China.
| | - Lujun Deng
- Institute of Biotechnology, Guizhou Provincial Academy of Agricultural Sciences, Guiyang, 550006, China
| | - Zhi Zhao
- College of Agriculture, Guizhou University, Guiyang, 550025, China
- Key Laboratory of Breeding and Cultivation of Medicinal Plants of Guizhou Province, Guiyang, 550025, China
| | - Chunli Luo
- College of Agriculture, Guizhou University, Guiyang, 550025, China
- Key Laboratory of Breeding and Cultivation of Medicinal Plants of Guizhou Province, Guiyang, 550025, China
| | - Fulai Luo
- College of Agriculture, Guizhou University, Guiyang, 550025, China
- Key Laboratory of Breeding and Cultivation of Medicinal Plants of Guizhou Province, Guiyang, 550025, China
| | - Hualei Wang
- College of Agriculture, Guizhou University, Guiyang, 550025, China
- Key Laboratory of Breeding and Cultivation of Medicinal Plants of Guizhou Province, Guiyang, 550025, China
| | - Jiyong Yang
- Chishui Xintian Traditional Chinese Medicine Industry Development Co. Ltd, Chishui, 64700, China
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Shaw AJ, Duffy AM, Nieto-Lugilde M, Aguero B, Schuette S, Robinson S, Loveland J, Hicks KA, Weston D, Piatkowski B, Kolton M, Koska JE, Healey AL. Clonality, local population structure and gametophyte sex ratios in cryptic species of the Sphagnum magellanicum complex. Ann Bot 2023; 132:77-94. [PMID: 37417448 PMCID: PMC10550268 DOI: 10.1093/aob/mcad077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Accepted: 07/06/2023] [Indexed: 07/08/2023]
Abstract
BACKGROUND AND AIMS Sphagnum (peatmoss) comprises a moss (Bryophyta) clade with ~300-500 species. The genus has unparalleled ecological importance because Sphagnum-dominated peatlands store almost a third of the terrestrial carbon pool and peatmosses engineer the formation and microtopography of peatlands. Genomic resources for Sphagnum are being actively expanded, but many aspects of their biology are still poorly known. Among these are the degree to which Sphagnum species reproduce asexually, and the relative frequencies of male and female gametophytes in these haploid-dominant plants. We assess clonality and gametophyte sex ratios and test hypotheses about the local-scale distribution of clones and sexes in four North American species of the S. magellanicum complex. These four species are difficult to distinguish morphologically and are very closely related. We also assess microbial communities associated with Sphagnum host plant clones and sexes at two sites. METHODS Four hundred and five samples of the four species, representing 57 populations, were subjected to restriction site-associated DNA sequencing (RADseq). Analyses of population structure and clonality based on the molecular data utilized both phylogenetic and phenetic approaches. Multi-locus genotypes (genets) were identified using the RADseq data. Sexes of sampled ramets were determined using a molecular approach that utilized coverage of loci on the sex chromosomes after the method was validated using a sample of plants that expressed sex phenotypically. Sex ratios were estimated for each species, and populations within species. Difference in fitness between genets was estimated as the numbers of ramets each genet comprised. Degrees of clonality [numbers of genets/numbers of ramets (samples)] within species, among sites, and between gametophyte sexes were estimated. Sex ratios were estimated for each species, and populations within species. Sphagnum-associated microbial communities were assessed at two sites in relation to Sphagnum clonality and sex. KEY RESULTS All four species appear to engage in a mixture of sexual and asexual (clonal) reproduction. A single ramet represents most genets but two to eight ramets were dsumbers ansd text etected for some genets. Only one genet is represented by ramets in multiple populations; all other genets are restricted to a single population. Within populations ramets of individual genets are spatially clustered, suggesting limited dispersal even within peatlands. Sex ratios are male-biased in S. diabolicum but female-biased in the other three species, although significantly so only in S. divinum. Neither species nor males/females differ in levels of clonal propagation. At St Regis Lake (NY) and Franklin Bog (VT), microbial community composition is strongly differentiated between the sites, but differences between species, genets and sexes were not detected. Within S. divinum, however, female gametophytes harboured two to three times the number of microbial taxa as males. CONCLUSIONS These four Sphagnum species all exhibit similar reproductive patterns that result from a mixture of sexual and asexual reproduction. The spatial patterns of clonally replicated ramets of genets suggest that these species fall between the so-called phalanx patterns, where genets abut one another but do not extensively mix because of limited ramet fragmentation, and the guerrilla patterns, where extensive genet fragmentation and dispersal result in greater mixing of different genets. Although sex ratios in bryophytes are most often female-biased, both male and female biases occur in this complex of closely related species. The association of far greater microbial diversity for female gametophytes in S. divinum, which has a female-biased sex ratio, suggests additional research to determine if levels of microbial diversity are consistently correlated with differing patterns of sex ratio biases.
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Affiliation(s)
- A Jonathan Shaw
- Department of Biology & L. E. Anderson Bryophyte Herbarium, Duke University, Durham, NC, 27708, USA
| | - Aaron M Duffy
- Department of Biology & L. E. Anderson Bryophyte Herbarium, Duke University, Durham, NC, 27708, USA
| | - Marta Nieto-Lugilde
- Department of Biology & L. E. Anderson Bryophyte Herbarium, Duke University, Durham, NC, 27708, USA
| | - Blanka Aguero
- Department of Biology & L. E. Anderson Bryophyte Herbarium, Duke University, Durham, NC, 27708, USA
| | - Scott Schuette
- Pennsylvania Natural Heritage Program, Western Pennsylvania Conservancy, Pittsburgh, PA, 15222, USA
| | - Sean Robinson
- Department of Biology, SUNY Oneonta, Oneonta, NY, 13820, USA
| | - James Loveland
- Department of Biology, Kenyon College, Gambier, OH 43022, USA
| | - Karen A Hicks
- Department of Biology, Kenyon College, Gambier, OH 43022, USA
| | - David Weston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Bryan Piatkowski
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Max Kolton
- The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Joel E Koska
- Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - Adam L Healey
- HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
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Koelemeijer IA, Ehrlén J, De Frenne P, Jönsson M, Berg P, Hylander K. Forest edge effects on moss growth are amplified by drought. Ecol Appl 2023; 33:e2851. [PMID: 36938961 DOI: 10.1002/eap.2851] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Revised: 01/29/2023] [Accepted: 03/09/2023] [Indexed: 06/02/2023]
Abstract
Forest fragmentation increases the amount of edges in the landscape. Differences in wind, radiation, and vegetation structure create edge-to-interior gradients in forest microclimate, and these gradients are likely to be more pronounced during droughts and heatwaves. Although the effects of climate extremes on edge influences have potentially strong and long-lasting impacts on forest understory biodiversity, they are not well understood and are not often considered in management and landscape planning. Here we used a novel method of retrospectively quantifying growth to assess biologically relevant edge influences likely caused by microclimate using Hylocomium splendens, a moss with annual segments. We examined how spatio-temporal variation in drought across 3 years and 46 sites in central Sweden, affected the depth and magnitude of edge influences. We also investigated whether edge effects during drought were influenced by differences in forest structure. Edge effects were almost twice as strong in the drought year compared to the non-drought years, but we did not find clear evidence that they penetrated deeper into the forest in the drought year. Edge influences were also greater in areas that had fewer days with rain during the drought year. Higher levels of forest canopy cover and tree height buffered the magnitude of edge influence in times of drought. Our results demonstrate that edge effects are amplified by drought, suggesting that fragmentation effects are aggravated when droughts become more frequent and severe. Our results suggest that dense edges and buffer zones with high canopy cover can be important ways to mitigate negative drought impacts in forest edges.
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Affiliation(s)
- Irena Adia Koelemeijer
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91, Stockholm, Sweden
- Bolin Centre for Climate Research, Stockholm University, SE-106 91, Stockholm, Sweden
| | - Johan Ehrlén
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91, Stockholm, Sweden
- Bolin Centre for Climate Research, Stockholm University, SE-106 91, Stockholm, Sweden
| | - Pieter De Frenne
- Forest & Nature Lab, Department of Environment, Faculty of Bioscience Engineering, Ghent University, Geraardsbergsesteenweg 267, 9090, Melle, Belgium
| | - Mari Jönsson
- Swedish Species Information Centre, Swedish University of Agricultural Sciences, SE-750 07, Uppsala, Sweden
| | - Peter Berg
- SMHI (Swedish Meteorological and Hydrological Institute), S-601 76, Norrköping, Sweden
| | - Kristoffer Hylander
- Department of Ecology, Environment and Plant Sciences, Stockholm University, SE-106 91, Stockholm, Sweden
- Bolin Centre for Climate Research, Stockholm University, SE-106 91, Stockholm, Sweden
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10
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Yang Q, Liu Z, Houlton BZ, Gao D, Chang Q, Li H, Fan X, Liu B, Bai E. Isotopic evidence for increased carbon and nitrogen exchanges between peatland plants and their symbiotic microbes with rising atmospheric CO 2 concentrations since 15,000 cal. year BP. Glob Chang Biol 2023; 29:1939-1950. [PMID: 36585918 DOI: 10.1111/gcb.16578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/29/2022] [Accepted: 12/16/2022] [Indexed: 05/28/2023]
Abstract
Whether nitrogen (N) availability will limit plant growth and removal of atmospheric CO2 by the terrestrial biosphere this century is controversial. Studies have suggested that N could progressively limit plant growth, as trees and soils accumulate N in slowly cycling biomass pools in response to increases in carbon sequestration. However, a question remains over whether longer-term (decadal to century) feedbacks between climate, CO2 and plant N uptake could emerge to reduce ecosystem-level N limitations. The symbioses between plants and microbes can help plants to acquire N from the soil or from the atmosphere via biological N2 fixation-the pathway through which N can be rapidly brought into ecosystems and thereby partially or completely alleviate N limitation on plant productivity. Here we present measurements of plant N isotope composition (δ15 N) in a peat core that dates to 15,000 cal. year BP to ascertain ecosystem-level N cycling responses to rising atmospheric CO2 concentrations. We find that pre-industrial increases in global atmospheric CO2 concentrations corresponded with a decrease in the δ15 N of both Sphagnum moss and Ericaceae when constrained for climatic factors. A modern experiment demonstrates that the δ15 N of Sphagnum decreases with increasing N2 -fixation rates. These findings suggest that plant-microbe symbioses that facilitate N acquisition are, over the long term, enhanced under rising atmospheric CO2 concentrations, highlighting an ecosystem-level feedback mechanism whereby N constraints on terrestrial carbon storage can be overcome.
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Affiliation(s)
- Qiannan Yang
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Ziping Liu
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Benjamin Z Houlton
- Department of Ecology and Evolutionary Biology and Department of Global Development, Cornell University, Ithaca, New York, USA
| | - Decai Gao
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Qing Chang
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Hongkai Li
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Xianlei Fan
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Bai Liu
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Edith Bai
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
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11
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Shao S, Wu J, He H, Moore TR, Bubier J, Larmola T, Juutinen S, Roulet NT. Ericoid mycorrhizal fungi mediate the response of ombrotrophic peatlands to fertilization: a modeling study. New Phytol 2023; 238:80-95. [PMID: 36300568 DOI: 10.1111/nph.18555] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 10/07/2022] [Indexed: 06/16/2023]
Abstract
Ericaceous shrubs adapt to the nutrient-poor conditions in ombrotrophic peatlands by forming symbiotic associations with ericoid mycorrhizal (ERM) fungi. Increased nutrient availability may diminish the role of ERM pathways in shrub nutrient uptake, consequently altering the biogeochemical cycling within bogs. To explore the significance of ERM fungi in ombrotrophic peatlands, we developed the model MWMmic (a peat cohort-based biogeochemical model) into MWMmic-NP by explicitly incorporating plant-soil nitrogen (N) and phosphorus (P) cycling and ERM fungi processes. The new model was applied to simulate the biogeochemical cycles in the Mer Bleue (MB) bog in Ontario, Canada, and their responses to fertilization. MWMmic_NP reproduced the carbon(C)-N-P cycles and vegetation dynamics observed in the MB bog, and their responses to fertilization. Our simulations showed that fertilization increased shrub biomass by reducing the C allocation to ERM fungi, subsequently suppressing the growth of underlying Sphagnum mosses, and decreasing the peatland C sequestration. Our species removal simulation further demonstrated that ERM fungi were key to maintaining the shrub-moss coexistence and C sink function of bogs. Our results suggest that ERM fungi play a significant role in the biogeochemical cycles in ombrotrophic peatlands and should be considered in future modeling efforts.
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Affiliation(s)
- Siya Shao
- Department of Geography, McGill University, Montreal, QC, H3A 0G4, Canada
- Department of Biological Sciences, Dartmouth College, Hanover, NH, 03755, USA
| | - Jianghua Wu
- Environment and Sustainability, School of Science and the Environment, Memorial University of Newfoundland, St John's, NL, A1C 5S7, Canada
| | - Hongxing He
- Department of Geography, McGill University, Montreal, QC, H3A 0G4, Canada
| | - Tim R Moore
- Department of Geography, McGill University, Montreal, QC, H3A 0G4, Canada
| | - Jill Bubier
- Department of Environmental Studies, Mount Holyoke College, South Hadley, MA, 01075, USA
| | - Tuula Larmola
- Natural Resources Institute Finland (Luke), 00790, Helsinki, Finland
| | - Sari Juutinen
- Finnish Meteorological Institute, 00560, Helsinki, Finland
| | - Nigel T Roulet
- Department of Geography, McGill University, Montreal, QC, H3A 0G4, Canada
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12
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Koranda M, Rinnan R, Michelsen A. Close coupling of plant functional types with soil microbial community composition drives soil carbon and nutrient cycling in tundra heath. Plant Soil 2023; 488:551-572. [PMID: 37600962 PMCID: PMC10435393 DOI: 10.1007/s11104-023-05993-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 03/14/2023] [Indexed: 08/22/2023]
Abstract
Aims This study aimed at elucidating divergent effects of two dominant plant functional types (PFTs) in tundra heath, dwarf shrubs and mosses, on soil microbial processes and soil carbon (C) and nutrient availability, and thereby to enhance our understanding of the complex interactions between PFTs, soil microbes and soil functioning. Methods Samples of organic soil were collected under three dwarf shrub species (of distinct mycorrhizal association and life form) and three moss species in early and late growing season. We analysed soil C and nutrient pools, extracellular enzyme activities and phospholipid fatty acid profiles, together with a range of plant traits, soil and abiotic site characteristics. Results Shrub soils were characterised by high microbial biomass C and phosphorus and phosphatase activity, which was linked with a fungal-dominated microbial community, while moss soils were characterised by high soil nitrogen availability, peptidase and peroxidase activity associated with a bacterial-dominated microbial community. The variation in soil microbial community structure was explained by mycorrhizal association, root morphology, litter and soil organic matter quality and soil pH-value. Furthermore, we found that the seasonal variation in microbial biomass and enzyme activities over the growing season, likely driven by plant belowground C allocation, was most pronounced under the tallest shrub Betula nana. Conclusion Our study demonstrates a close coupling of PFTs with soil microbial communities, microbial decomposition processes and soil nutrient availability in tundra heath, which suggests potential strong impacts of global change-induced shifts in plant community composition on carbon and nutrient cycling in high-latitude ecosystems. Supplementary Information The online version contains supplementary material available at 10.1007/s11104-023-05993-w.
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Affiliation(s)
- Marianne Koranda
- Division of Terrestrial Ecosystem Research, Centre for Microbiology and Environmental Systems Science, University of Vienna, Djerassiplatz 1, 1030 Vienna, Austria
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, 1350 Copenhagen, Denmark
| | - Riikka Rinnan
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, 1350 Copenhagen, Denmark
| | - Anders Michelsen
- Terrestrial Ecology Section, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, 1350 Copenhagen, Denmark
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13
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Kubota M, Matsushita N, Nakamura T, Fukuda K. Nitrogen fixation and nifH gene diversity in cyanobacteria living on feather mosses in a subalpine forest of Mt. Fuji. Oecologia 2023; 201:749-760. [PMID: 36808304 PMCID: PMC10038973 DOI: 10.1007/s00442-023-05334-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 02/07/2023] [Indexed: 02/23/2023]
Abstract
In the boreal forests, feather mosses such as Hylocomium splendens and Pleurozium schreberi are colonized by cyanobacteria, which provide large amounts of nitrogen to forest ecosystems through nitrogen fixation. Although these feather mosses are also ubiquitous in subalpine forests of East Asia, little is known regarding their associated cyanobacteria and their ability to fix nitrogen. In this study, we investigated (1) whether cyanobacteria co-exist and fix nitrogen in the two species of feather mosses that cover the ground surface in a subalpine forest of Mt. Fuji, (2) whether cyanobacteria belonging to a common cluster with boreal forests are found in feather mosses in Mt. Fuji, and (3) whether moss-associated nitrogen fixation rates differed among moss growing substrates, canopy openness, and moss nitrogen concentrations in the same forest area. Our results showed that cyanobacteria colonized feather mosses in the subalpine forests of Mt. Fuji and acetylene reduction rates as an index of nitrogen fixation tended to be higher in H. splendens than in P. schreberi. Based on analysis of the nifH gene, 43 bacterial operational taxonomic units (OTUs) were identified, 28 of which represented cyanobacteria. Among the five clusters of cyanobacteria classified based on their nifH gene and identified in northern Europe, four (Nostoc cluster I, Nostoc cluster II, Stigonema cluster, and nifH2 cluster) were also found at Mt. Fuji. The acetylene reduction rate differed depending on the moss growing substrate and the total nitrogen concentration of moss shoots, and a strong negative correlation was observed with the total nitrogen concentration.
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Affiliation(s)
- Masayuki Kubota
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-Ku, Tokyo, Japan.
| | - Norihisa Matsushita
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-Ku, Tokyo, Japan
| | - Toshihiko Nakamura
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-Ku, Tokyo, Japan
| | - Kenji Fukuda
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-Ku, Tokyo, Japan
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14
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Porada P, Bader MY, Berdugo MB, Colesie C, Ellis CJ, Giordani P, Herzschuh U, Ma Y, Launiainen S, Nascimbene J, Petersen I, Raggio Quílez J, Rodríguez-Caballero E, Rousk K, Sancho LG, Scheidegger C, Seitz S, Van Stan JT, Veste M, Weber B, Weston DJ. A research agenda for nonvascular photoautotrophs under climate change. New Phytol 2023; 237:1495-1504. [PMID: 36511294 DOI: 10.1111/nph.18631] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 11/17/2022] [Indexed: 06/17/2023]
Abstract
Nonvascular photoautotrophs (NVP), including bryophytes, lichens, terrestrial algae, and cyanobacteria, are increasingly recognized as being essential to ecosystem functioning in many regions of the world. Current research suggests that climate change may pose a substantial threat to NVP, but the extent to which this will affect the associated ecosystem functions and services is highly uncertain. Here, we propose a research agenda to address this urgent question, focusing on physiological and ecological processes that link NVP to ecosystem functions while also taking into account the substantial taxonomic diversity across multiple ecosystem types. Accordingly, we developed a new categorization scheme, based on microclimatic gradients, which simplifies the high physiological and morphological diversity of NVP and world-wide distribution with respect to several broad habitat types. We found that habitat-specific ecosystem functions of NVP will likely be substantially affected by climate change, and more quantitative process understanding is required on: (1) potential for acclimation; (2) response to elevated CO2 ; (3) role of the microbiome; and (4) feedback to (micro)climate. We suggest an integrative approach of innovative, multimethod laboratory and field experiments and ecophysiological modelling, for which sustained scientific collaboration on NVP research will be essential.
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Affiliation(s)
- Philipp Porada
- Ecological Modelling, Universität Hamburg, Ohnhorststr. 18, 22609, Hamburg, Germany
| | - Maaike Y Bader
- Ecological Plant Geography, University of Marburg, Deutschhausstr. 10, 35032, Marburg, Germany
| | - Monica B Berdugo
- Ecological Plant Geography, University of Marburg, Deutschhausstr. 10, 35032, Marburg, Germany
| | - Claudia Colesie
- School of Geosciences, University of Edinburgh, Edinburgh, EH9 3JW, UK
| | | | | | - Ulrike Herzschuh
- Polar Terrestrial Environmental Systems, Alfred Wegener Institute, Telegrafenberg A45, 14473, Potsdam, Germany
| | - Yunyao Ma
- Ecological Modelling, Universität Hamburg, Ohnhorststr. 18, 22609, Hamburg, Germany
| | - Samuli Launiainen
- Ecosystems and Modeling, Natural Resources Institute Finland (Luke), Latokartanonkaari 9, 00790, Helsinki, Finland
| | - Juri Nascimbene
- BIOME Lab, Department of Biological, Geological and Environmental Sciences, Alma Mater Studiorum University of Bologna, 40126, Bologna, Italy
| | - Imke Petersen
- Ecological Modelling, Universität Hamburg, Ohnhorststr. 18, 22609, Hamburg, Germany
| | - José Raggio Quílez
- Department of Pharmacology, Pharmacognosy and Botany, Universidad Complutense de Madrid, E-28040, Madrid, Spain
| | | | - Kathrin Rousk
- Department of Biology, University of Copenhagen, Universitetsparken 15, 2100, København, Denmark
| | - Leopoldo G Sancho
- Department of Pharmacology, Pharmacognosy and Botany, Universidad Complutense de Madrid, E-28040, Madrid, Spain
| | - Christoph Scheidegger
- Biodiversity and Conservation Biology, Eidg. Forschungsanstalt WSL, Zürcherstr. 111, 8903, Birmensdorf, Switzerland
| | - Steffen Seitz
- Soil Science and Geomorphology, University of Tübingen, Rümelinstr. 19-23, 72070, Tübingen, Germany
| | - John T Van Stan
- Department of Biological, Geological, and Environmental Sciences, Cleveland State University, 2121 Euclid Ave., Cleveland, OH, 44115, USA
| | - Maik Veste
- Institute of Environmental Sciences, Brandenburgische Technische Universität Cottbus-Senftenberg, Konrad-Wachsmann-Allee 6, 03046, Cottbus, Germany
| | - Bettina Weber
- Division of Plant Sciences, Institute for Biology, University of Graz, Holteigasse 6, A-8010, Graz, Austria
- Multiphase Chemistry Department, Max Planck Institute for Chemistry, Hahn-Meitner-Weg 1, 55128, Mainz, Germany
| | - David J Weston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
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15
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Arróniz-Crespo M, Bougoure J, Murphy DV, Cutler NA, Souza-Egipsy V, Chaput DL, Jones DL, Ostle N, Wade SC, Clode PL, DeLuca TH. Revealing the transfer pathways of cyanobacterial-fixed N into the boreal forest through the feather-moss microbiome. Front Plant Sci 2022; 13:1036258. [PMID: 36570951 PMCID: PMC9780503 DOI: 10.3389/fpls.2022.1036258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/04/2022] [Accepted: 11/21/2022] [Indexed: 06/17/2023]
Abstract
INTRODUCTION Biological N2 fixation in feather-mosses is one of the largest inputs of new nitrogen (N) to boreal forest ecosystems; however, revealing the fate of newly fixed N within the bryosphere (i.e. bryophytes and their associated organisms) remains uncertain. METHODS Herein, we combined 15N tracers, high resolution secondary ion mass-spectrometry (NanoSIMS) and a molecular survey of bacterial, fungal and diazotrophic communities, to determine the origin and transfer pathways of newly fixed N2 within feather-moss (Pleurozium schreberi) and its associated microbiome. RESULTS NanoSIMS images reveal that newly fixed N2, derived from cyanobacteria, is incorporated into moss tissues and associated bacteria, fungi and micro-algae. DISCUSSION These images demonstrate that previous assumptions that newly fixed N2 is sequestered into moss tissue and only released by decomposition are not correct. We provide the first empirical evidence of new pathways for N2 fixed in feather-mosses to enter the boreal forest ecosystem (i.e. through its microbiome) and discuss the implications for wider ecosystem function.
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Affiliation(s)
- María Arróniz-Crespo
- School of Natural Sciences, Bangor University, Bangor, United Kingdom
- School of Agricultural Engineering, CEIGRAM, Universidad Politecnica de Madrid, Madrid, Spain
| | - Jeremy Bougoure
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
| | - Daniel V. Murphy
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia
- Centre for Microscopy, Characterisation and Analysis, The University of Western Australia, Perth, WA, Australia
- Centre for Sustainable Farming Systems, Food Futures Institute, Murdoch University, Murdoch, WA, Australia
| | - Nick A. Cutler
- Department of Geography, Scott Polar Research Institute, Cambridge, United Kingdom
- School of Geography, Politics and Sociology, Newcastle University, Newcastle, United Kingdom
| | - Virginia Souza-Egipsy
- Servicio de Microscopıa Electronica, Instituto Ciencias Agrarias CSIC, Madrid, Spain
| | | | - Davey L. Jones
- School of Natural Sciences, Bangor University, Bangor, United Kingdom
- Centre for Sustainable Farming Systems, Food Futures Institute, Murdoch University, Murdoch, WA, Australia
| | - Nicholas Ostle
- Lancaster Environment Centre, Lancaster University, Lancaster, United Kingdom
| | - Stephen C. Wade
- Advanced Microscopy and Bioimaging, Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Peta L. Clode
- Centre for Microscopy, Characterisation and Analysis, The University of Western Australia, Perth, WA, Australia
- School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
| | - Thomas H. DeLuca
- Department of Forest Ecosystems & Society, College of Forestry, Oregon State University, Corvallis, OR, United States
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16
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Grau-Andrés R, Thieffry S, Tian S, Wardle DA, Kardol P. Responses of bryosphere fauna to drought across a boreal forest chronosequence. Oecologia 2022; 200:231-245. [PMID: 36074302 PMCID: PMC9547781 DOI: 10.1007/s00442-022-05255-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 08/31/2022] [Indexed: 11/29/2022]
Abstract
Projected changes in precipitation regimes can greatly impact soil biota, which in turn alters key ecosystem functions. In moss-dominated ecosystems, the bryosphere (i.e., the ground moss layer including live and senesced moss) plays a key role in carbon and nutrient cycling, and it hosts high abundances of microfauna (i.e., nematodes and tardigrades) and mesofauna (i.e., mites and springtails). However, we know very little about how bryosphere fauna responds to precipitation, and whether this response changes across environmental gradients. Here, we used a mesocosm experiment to study the effect of volume and frequency of precipitation on the abundance and community composition of functional groups of bryosphere fauna. Hylocomium splendens bryospheres were sampled from a long-term post-fire boreal forest chronosequence in northern Sweden which varies greatly in environmental conditions. We found that reduced precipitation promoted the abundance of total microfauna and of total mesofauna, but impaired predaceous/omnivorous nematodes, and springtails. Generally, bryosphere fauna responded more strongly to precipitation volume than to precipitation frequency. For some faunal functional groups, the effects of precipitation frequency were stronger at reduced precipitation volumes. Context-dependency effects were found for microfauna only: microfauna was more sensitive to precipitation in late-successional forests (i.e., those with lower productivity and soil nutrient availability) than in earlier-successional forests. Our results also suggest that drought-induced changes in trophic interactions and food resources in the bryosphere may increase faunal abundance. Consequently, drier bryospheres that may result from climate change could promote carbon and nutrient turnover from fauna activity, especially in older, less productive forests.
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Affiliation(s)
- Roger Grau-Andrés
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden
| | - Sylvia Thieffry
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden
| | - Shanyi Tian
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden
- Soil Ecology Lab, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095 China
| | - David A. Wardle
- Asian School of the Environment, Nanyang Technological University, Singapore, Singapore
| | - Paul Kardol
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden
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17
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Lu Q, Xiao Y. From manure to high-value fertilizer: The employment of microalgae as a nutrient carrier for sustainable agriculture. ALGAL RES 2022; 67:102855. [DOI: 10.1016/j.algal.2022.102855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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18
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Jassey VEJ, Hamard S, Lepère C, Céréghino R, Corbara B, Küttim M, Leflaive J, Leroy C, Carrias JF. Photosynthetic microorganisms effectively contribute to bryophyte CO 2 fixation in boreal and tropical regions. ISME Commun 2022; 2:64. [PMID: 37938283 PMCID: PMC9723567 DOI: 10.1038/s43705-022-00149-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 06/28/2022] [Accepted: 07/05/2022] [Indexed: 04/26/2023]
Abstract
Photosynthetic microbes are omnipresent in land and water. While they critically influence primary productivity in aquatic systems, their importance in terrestrial ecosystems remains largely overlooked. In terrestrial systems, photoautotrophs occur in a variety of habitats, such as sub-surface soils, exposed rocks, and bryophytes. Here, we study photosynthetic microbial communities associated with bryophytes from a boreal peatland and a tropical rainforest. We interrogate their contribution to bryophyte C uptake and identify the main drivers of that contribution. We found that photosynthetic microbes take up twice more C in the boreal peatland (~4.4 mg CO2.h-1.m-2) than in the tropical rainforest (~2.4 mg CO2.h-1.m-2), which corresponded to an average contribution of 4% and 2% of the bryophyte C uptake, respectively. Our findings revealed that such patterns were driven by the proportion of photosynthetic protists in the moss microbiomes. Low moss water content and light conditions were not favourable to the development of photosynthetic protists in the tropical rainforest, which indirectly reduced the overall photosynthetic microbial C uptake. Our investigations clearly show that photosynthetic microbes associated with bryophyte effectively contribute to moss C uptake despite species turnover. Terrestrial photosynthetic microbes clearly have the capacity to take up atmospheric C in bryophytes living under various environmental conditions, and therefore potentially support rates of ecosystem-level net C exchanges with the atmosphere.
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Affiliation(s)
- Vincent E J Jassey
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Université Toulouse 3-Paul Sabatier (UT3), CNRS, 31062, Toulouse, France.
| | - Samuel Hamard
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Université Toulouse 3-Paul Sabatier (UT3), CNRS, 31062, Toulouse, France
| | - Cécile Lepère
- Laboratoire Microorganismes, Génome Et Environnement (LMGE), Université Clermont Auvergne, CNRS, Clermont-Ferrand, France
| | - Régis Céréghino
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Université Toulouse 3-Paul Sabatier (UT3), CNRS, 31062, Toulouse, France
| | - Bruno Corbara
- Laboratoire Microorganismes, Génome Et Environnement (LMGE), Université Clermont Auvergne, CNRS, Clermont-Ferrand, France
| | - Martin Küttim
- Institute of Ecology, School of Natural Sciences and Health, Tallinn University, Uus-Sadama 5, 10120, Tallinn, Estonia
| | - Joséphine Leflaive
- Laboratoire Ecologie Fonctionnelle et Environnement (LEFE), Université Toulouse 3-Paul Sabatier (UT3), CNRS, 31062, Toulouse, France
| | - Céline Leroy
- AMAP, Univ Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France
- ECOFOG, AgroParisTech, CIRAD, CNRS, INRAE, Université de Guyane, Université des Antilles, Campus Agronomique, Kourou, France
| | - Jean-François Carrias
- Laboratoire Microorganismes, Génome Et Environnement (LMGE), Université Clermont Auvergne, CNRS, Clermont-Ferrand, France
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19
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Alvarenga DO, Rousk K. Unraveling host-microbe interactions and ecosystem functions in moss-bacteria symbioses. J Exp Bot 2022; 73:4473-4486. [PMID: 35728619 DOI: 10.1093/jxb/erac091] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 06/15/2022] [Indexed: 06/15/2023]
Abstract
Mosses are non-vascular plants usually found in moist and shaded areas, with great ecological importance in several ecosystems. This is especially true in northern latitudes, where mosses are responsible for up to 100% of primary production in some ecosystems. Mosses establish symbiotic associations with unique bacteria that play key roles in the carbon and nitrogen cycles. For instance, in boreal environments, more than 35% of the nitrogen fixed by diazotrophic symbionts in peatlands is transferred to mosses, directly affecting carbon fixation by the hosts, while moss-associated methanotrophic bacteria contribute 10-30% of moss carbon. Further, half of ecosystem N input may derive from moss-cyanobacteria associations in pristine ecosystems. Moss-bacteria interactions have consequences on a global scale since northern environments sequester 20% of all the carbon generated by forests in the world and stock at least 32% of global terrestrial carbon. Different moss hosts influence bacteria in distinct ways, which suggests that threats to mosses also threaten unique microbial communities with important ecological and biogeochemical consequences. Since their origin ~500 Ma, mosses have interacted with bacteria, making these associations ideal models for understanding the evolution of plant-microbe associations and their contribution to biogeochemical cycles.
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Affiliation(s)
- Danillo O Alvarenga
- Department of Biology, Terrestrial Ecology Section, University of Copenhagen, Universitetsparken 15, DK-2100, Copenhagen, Denmark
- Centre for Permafrost, University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Kathrin Rousk
- Department of Biology, Terrestrial Ecology Section, University of Copenhagen, Universitetsparken 15, DK-2100, Copenhagen, Denmark
- Centre for Permafrost, University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
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20
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Carrell AA, Lawrence TJ, Cabugao KGM, Carper DL, Pelletier DA, Lee JH, Jawdy SS, Grimwood J, Schmutz J, Hanson PJ, Shaw AJ, Weston DJ. Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming. New Phytol 2022; 234:2111-2125. [PMID: 35266150 PMCID: PMC9310625 DOI: 10.1111/nph.18072] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 02/21/2022] [Indexed: 05/19/2023]
Abstract
Sphagnum peatmosses are fundamental members of peatland ecosystems, where they contribute to the uptake and long-term storage of atmospheric carbon. Warming threatens Sphagnum mosses and is known to alter the composition of their associated microbiome. Here, we use a microbiome transfer approach to test if microbiome thermal origin influences host plant thermotolerance. We leveraged an experimental whole-ecosystem warming study to collect field-grown Sphagnum, mechanically separate the associated microbiome and then transfer onto germ-free laboratory Sphagnum for temperature experiments. Host and microbiome dynamics were assessed with growth analysis, Chla fluorescence imaging, metagenomics, metatranscriptomics and 16S rDNA profiling. Microbiomes originating from warming field conditions imparted enhanced thermotolerance and growth recovery at elevated temperatures. Metagenome and metatranscriptome analyses revealed that warming altered microbial community structure in a manner that induced the plant heat shock response, especially the HSP70 family and jasmonic acid production. The heat shock response was induced even without warming treatment in the laboratory, suggesting that the warm-microbiome isolated from the field provided the host plant with thermal preconditioning. Our results demonstrate that microbes, which respond rapidly to temperature alterations, can play key roles in host plant growth response to rapidly changing environments.
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Affiliation(s)
- Alyssa A. Carrell
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | - Travis J. Lawrence
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | - Kristine Grace M. Cabugao
- Bredesen Center for Interdisciplinary Research and Graduate EducationUniversity of Tennessee1502 Cumberland Ave.KnoxvilleTN37996USA
| | - Dana L. Carper
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | - Dale A. Pelletier
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | - Jun Hyung Lee
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | - Sara S. Jawdy
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | - Jane Grimwood
- HudsonAlpha Institute for Biotechnology601 Genome WayHuntsvilleAL35806USA
- Department of Energy Joint Genome InstituteLawrence Berkeley National Lab1 Cyclotron Rd.BerkeleyCA94720USA
| | - Jeremy Schmutz
- HudsonAlpha Institute for Biotechnology601 Genome WayHuntsvilleAL35806USA
- Department of Energy Joint Genome InstituteLawrence Berkeley National Lab1 Cyclotron Rd.BerkeleyCA94720USA
| | - Paul J. Hanson
- Environmental Sciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
| | | | - David J. Weston
- Biosciences DivisionOak Ridge National Laboratory1 Bethel Valley RdOak RidgeTN37831USA
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21
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Klarenberg IJ, Keuschnig C, Russi Colmenares AJ, Warshan D, Jungblut AD, Jónsdóttir IS, Vilhelmsson O. Long-term warming effects on the microbiome and nifH gene abundance of a common moss species in sub-Arctic tundra. New Phytol 2022; 234:2044-2056. [PMID: 34719786 DOI: 10.1111/nph.17837] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 10/17/2021] [Indexed: 06/13/2023]
Abstract
Bacterial communities form the basis of biogeochemical processes and determine plant growth and health. Mosses harbour diverse bacterial communities that are involved in nitrogen fixation and carbon cycling. Global climate change is causing changes in aboveground plant biomass and shifting species composition in the Arctic, but little is known about the response of moss microbiomes in these environments. Here, we studied the total and potentially active bacterial communities associated with Racomitrium lanuginosum in response to a 20-yr in situ warming in an Icelandic heathland. We evaluated the effect of warming and warming-induced shrub expansion on the moss bacterial community composition and diversity, and nifH gene abundance. Warming changed both the total and the potentially active bacterial community structure, while litter abundance only affected the total bacterial community structure. The abundance of nifH genes was negatively affected by litter abundance. We also found shifts in the potentially nitrogen-fixing community, with Nostoc decreasing and noncyanobacterial diazotrophs increasing in relative abundance. Our data suggest that the moss microbial community and potentially nitrogen fixing taxa will be sensitive to future warming, partly via changes in litter and shrub abundance.
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Affiliation(s)
- Ingeborg J Klarenberg
- Natural Resource Sciences, University of Akureyri, Borgir i Nordurslod, Akureyri, 600, Iceland
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Christoph Keuschnig
- Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Avenue Guy de Collongue 36, Écully, 69134, France
| | - Ana J Russi Colmenares
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Denis Warshan
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Anne D Jungblut
- Life Sciences Department, Natural History Museum, Cromwell Road, London, SW7 5BD, UK
| | - Ingibjörg S Jónsdóttir
- Faculty of Life and Environmental Sciences, University of Iceland, Sturlugata 7, 102, Reykjavík, Iceland
| | - Oddur Vilhelmsson
- Natural Resource Sciences, University of Akureyri, Borgir i Nordurslod, Akureyri, 600, Iceland
- BioMedical Center, University of Iceland, Vatnsmýrarvegur 16, 101, Reykjavík, Iceland
- School of Biological Sciences, University of Reading, Whiteknights, Reading, RG6 6AJ, UK
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22
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Rodríguez-Rodríguez JC, Bergeron Y, Kembel SW, Fenton NJ. Dominance of coniferous and broadleaved trees drives bacterial associations with boreal feather mosses. Environ Microbiol 2022; 24:3517-3528. [PMID: 35416394 DOI: 10.1111/1462-2920.16013] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 04/09/2022] [Accepted: 04/09/2022] [Indexed: 12/01/2022]
Abstract
The composition of ecologically important moss-associated bacterial communities seems to be mainly driven by host species but may also be shaped by environmental conditions related with tree dominance. The moss phyllosphere has been studied in coniferous forests while broadleaf forests remain understudied. To determine if host species or environmental conditions defined by tree dominance drives the bacterial diversity in the moss phyllosphere, we used 16S rRNA gene amplicon sequencing to quantify changes in bacterial communities as a function of host species (Pleurozium schreberi and Ptilium crista-castrensis) and forest type (coniferous black spruce versus deciduous broadleaf trembling aspen) in eastern Canada. The overall composition of moss phyllosphere was defined by the interaction of both factors, though most of bacterial phyla were determined by a strong effect of forest type. Bacterial α-diversity was highest in spruce forests, while there was greater turnover (β-diversity) and higher γ-diversity in aspen forests. Unexpectedly, Cyanobacteria were much more relatively abundant in aspen than in spruce forests, with the cyanobacteria family Nostocaceae differing the most between forest types. Our results advance the understanding of moss-associated microbial communities among coniferous and broadleaf deciduous forests, which are important with the increasing changes in tree dominance in the boreal system. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Juanita C Rodríguez-Rodríguez
- Forest Research Institute (IRF) , Université du Québec en Abitibi-Témiscamingue (UQAT), Rouyn-Noranda, QC J9X 5E4, Canada. 2 Département des sciences biologiques, Université du Québec à Montréal (UQAM), Montréal, QC, H2L 2C4, Canada
| | - Yves Bergeron
- Forest Research Institute (IRF) , Université du Québec en Abitibi-Témiscamingue (UQAT), Rouyn-Noranda, QC J9X 5E4, Canada. 2 Département des sciences biologiques, Université du Québec à Montréal (UQAM), Montréal, QC, H2L 2C4, Canada
| | | | - Nicole J Fenton
- Forest Research Institute (IRF) , Université du Québec en Abitibi-Témiscamingue (UQAT), Rouyn-Noranda, QC J9X 5E4, Canada. 2 Département des sciences biologiques, Université du Québec à Montréal (UQAM), Montréal, QC, H2L 2C4, Canada
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23
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Carrell AA, Veličković D, Lawrence TJ, Bowen BP, Louie KB, Carper DL, Chu RK, Mitchell HD, Orr G, Markillie LM, Jawdy SS, Grimwood J, Shaw AJ, Schmutz J, Northen TR, Anderton CR, Pelletier DA, Weston DJ. Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. ISME J 2022; 16:1074-85. [PMID: 34845335 DOI: 10.1038/s41396-021-01136-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 09/24/2021] [Accepted: 10/01/2021] [Indexed: 11/18/2022]
Abstract
Interactions between Sphagnum (peat moss) and cyanobacteria play critical roles in terrestrial carbon and nitrogen cycling processes. Knowledge of the metabolites exchanged, the physiological processes involved, and the environmental conditions allowing the formation of symbiosis is important for a better understanding of the mechanisms underlying these interactions. In this study, we used a cross-feeding approach with spatially resolved metabolite profiling and metatranscriptomics to characterize the symbiosis between Sphagnum and Nostoc cyanobacteria. A pH gradient study revealed that the Sphagnum–Nostoc symbiosis was driven by pH, with mutualism occurring only at low pH. Metabolic cross-feeding studies along with spatially resolved matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) identified trehalose as the main carbohydrate source released by Sphagnum, which were depleted by Nostoc along with sulfur-containing choline-O-sulfate, taurine and sulfoacetate. In exchange, Nostoc increased exudation of purines and amino acids. Metatranscriptome analysis indicated that Sphagnum host defense was downregulated when in direct contact with the Nostoc symbiont, but not as a result of chemical contact alone. The observations in this study elucidated environmental, metabolic, and physiological underpinnings of the widespread plant–cyanobacterial symbioses with important implications for predicting carbon and nitrogen cycling in peatland ecosystems as well as the basis of general host-microbe interactions.
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24
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Cano-Díaz C, Maestre FT, Wang J, Li J, Singh BK, Ochoa V, Gozalo B, Delgado-Baquerizo M. Effects of vegetation on soil cyanobacterial communities through time and space. New Phytol 2022; 234:435-448. [PMID: 35088410 DOI: 10.1111/nph.17996] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Accepted: 12/20/2021] [Indexed: 06/14/2023]
Abstract
Photoautotrophic soil cyanobacteria play essential ecological roles and are known to exhibit large changes in their diversity and abundance throughout early succession. However, much less is known about how and why soil cyanobacterial communities change as soil develops over centuries and millennia, and the effects that vegetation have on such communities. We combined an extensive field survey, including 16 global soil chronosequences across contrasting ecosystems (from deserts to tropical forests), with molecular analyses to investigate how the diversity and abundance of photosynthetic and nonphotosynthetic soil cyanobacteria are affected by vegetation change during soil development, over time periods from hundreds to thousands of years. We show that, in most chronosequences, the abundance, species richness and community composition of soil cyanobacteria are relatively stable as soil develops (from centuries to millennia). Regardless of soil age, forest chronosequences were consistently dominated by nonphotosynthetic cyanobacteria (Vampirovibrionia), while grasslands and shrublands were dominated by photosynthetic cyanobacteria. Chronosequences undergoing drastic vegetation shifts (e.g. transitions from grasslands to forests) experienced significant changes in the composition of soil cyanobacterial communities. Our results advance our understanding of the ecology of cyanobacterial classes, and of the understudied nonphotosynthetic cyanobacteria in particular, and highlight the key role of vegetation as a major driver of their temporal dynamics as soil develops.
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Affiliation(s)
- Concha Cano-Díaz
- Departamento de Biología, Geología, Física y Química Inorgánica, Escuela Superior de Ciencias Experimentales y Tecnología, Universidad Rey Juan Carlos, Móstoles, 28933, Spain
- CISAS - Centre for Research and Development in Agrifood Systems and Sustainability, Instituto Politécnico de Viana do Castelo, Viana do Castelo, Portugal
| | - Fernando T Maestre
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Edificio Nuevos Institutos, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, 03690, Spain
- Departamento de Ecología, Universidad de Alicante, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, Alicante, 03690, Spain
| | - Juntao Wang
- Global Centre for Land Based Innovation, University of Western Sydney, Penrith, NSW, 2751, Australia
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, NSW, 2751, Australia
| | - Jing Li
- Global Centre for Land Based Innovation, University of Western Sydney, Penrith, NSW, 2751, Australia
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, NSW, 2751, Australia
- Beijing Key Laboratory of Wetland Ecological Function and Restoration, Institute of Wetland Research, Chinese Academy of Forestry, Beijing, 100091, China
| | - Brajesh K Singh
- Global Centre for Land Based Innovation, University of Western Sydney, Penrith, NSW, 2751, Australia
- Hawkesbury Institute for the Environment, University of Western Sydney, Penrith, NSW, 2751, Australia
| | - Victoria Ochoa
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Edificio Nuevos Institutos, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, 03690, Spain
| | - Beatriz Gozalo
- Instituto Multidisciplinar para el Estudio del Medio "Ramon Margalef", Universidad de Alicante, Edificio Nuevos Institutos, Carretera de San Vicente del Raspeig s/n, San Vicente del Raspeig, 03690, Spain
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico. Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes 10, Sevilla, E-41012, Spain
- Unidad Asociada CSIC-UPO (BioFun). Universidad Pablo de Olavide, Sevilla, 41013, Spain
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25
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Kolton M, Weston DJ, Mayali X, Weber PK, Mcfarlane KJ, Pett-ridge J, Somoza MM, Lietard J, Glass JB, Lilleskov EA, Shaw AJ, Tringe S, Hanson PJ, Kostka JE, Martiny JBH. Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems. mBio 2022; 13:e03714-21. [DOI: 10.1128/mbio.03714-21] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Peat mosses of the genus Sphagnum are ecosystem engineers that frequently predominate over photosynthetic production in boreal peatlands. Sphagnum spp. host diverse microbial communities capable of nitrogen fixation (diazotrophy) and methane oxidation (methanotrophy), thereby potentially supporting plant growth under severely nutrient-limited conditions. Moreover, diazotrophic methanotrophs represent a possible “missing link” between the carbon and nitrogen cycles, but the functional contributions of the Sphagnum-associated microbiome remain in question. A combination of metagenomics, metatranscriptomics, and dual-isotope incorporation assays was applied to investigate Sphagnum microbiome community composition across the North American continent and provide empirical evidence for diazotrophic methanotrophy in Sphagnum-dominated ecosystems. Remarkably consistent prokaryotic communities were detected in over 250 Sphagnum SSU rRNA libraries from peatlands across the United States (5 states, 17 bog/fen sites, 18 Sphagnum species), with 12 genera of the core microbiome comprising 60% of the relative microbial abundance. Additionally, nitrogenase (nifH) and SSU rRNA gene amplicon analysis revealed that nitrogen-fixing populations made up nearly 15% of the prokaryotic communities, predominated by Nostocales cyanobacteria and Rhizobiales methanotrophs. While cyanobacteria comprised the vast majority (>95%) of diazotrophs detected in amplicon and metagenome analyses, obligate methanotrophs of the genus Methyloferula (order Rhizobiales) accounted for one-quarter of transcribed nifH genes. Furthermore, in dual-isotope tracer experiments, members of the Rhizobiales showed substantial incorporation of 13CH4 and 15N2 isotopes into their rRNA. Our study characterizes the core Sphagnum microbiome across large spatial scales and indicates that diazotrophic methanotrophs, here defined as obligate methanotrophs of the rare biosphere (Methyloferula spp. of the Rhizobiales) that also carry out diazotrophy, play a keystone role in coupling of the carbon and nitrogen cycles in nutrient-poor peatlands.
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Grau-Andrés R, Wardle DA, Kardol P. Bryosphere Loss Impairs Litter Decomposition Consistently Across Moss Species, Litter Types, and Micro-Arthropod Abundance. Ecosystems 2021. [DOI: 10.1007/s10021-021-00731-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
AbstractThe bryosphere (that is, ground mosses and their associated biota) is a key driver of nutrient and carbon dynamics in many terrestrial ecosystems, in part because it regulates litter decomposition. However, we have a poor understanding of how litter decomposition responds to changes in the bryosphere, including changes in bryosphere cover, moss species, and bryosphere-associated biota. Specifically, the contribution of micro-arthropods to litter decomposition in the bryosphere is unclear. Here, we used a 16-month litterbag field experiment in two boreal forests to investigate bryosphere effects on litter decomposition rates among two moss species (Pleurozium schreberi and Hylocomium splendens), and two litter types (higher-quality Betula pendula litter and lower-quality P. schreberi litter). Additionally, we counted all micro-arthropods in the litterbags and identified them to functional groups. We found that bryosphere removal reduced litter decomposition rates by 28% and micro-arthropod abundance by 29% and led to a colder micro-climate. Litter decomposition rates and micro-arthropod abundance were uncorrelated overall, but were positively correlated in B. pendula litterbags. Bryosphere effects on litter decomposition rates were consistent across moss species, litter types, and micro-arthropod abundances and community compositions. These findings suggest that micro-arthropods play a minor role in litter decomposition in the boreal forest floor, suggesting that other factors (for example, micro-climate, nutrient availability) likely drive the positive effect of the bryosphere on decomposition rates. Our results point to a substantial and consistent impairment of litter decomposition in response to loss of moss cover, which could have important implications for nutrient and carbon cycling in moss-dominated ecosystems.
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27
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Hupperts SF, Gerber S, Nilsson MC, Gundale MJ. Empirical and Earth system model estimates of boreal nitrogen fixation often differ: A pathway toward reconciliation. Glob Chang Biol 2021; 27:5711-5725. [PMID: 34382301 DOI: 10.1111/gcb.15836] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 08/06/2021] [Indexed: 06/13/2023]
Abstract
The impacts of global environmental change on productivity in northern latitudes will be contingent on nitrogen (N) availability. In circumpolar boreal ecosystems, nonvascular plants (i.e., bryophytes) and associated N2 -fixing diazotrophs provide one of the largest known N inputs but are rarely accounted for in Earth system models. Instead, most models link N2 -fixation with the functioning of vascular plants. Neglecting nonvascular N2 -fixation may be contributing toward high uncertainty that currently hinders model predictions in northern latitudes, where nonvascular N2 -fixing plants are more common. Adequately accounting for nonvascular N2 -fixation and its drivers could subsequently improve predictions of future N availability and ultimately, productivity, in northern latitudes. Here, we review empirical evidence of boreal nonvascular N2 -fixation responses to global change factors (elevated CO2 , N deposition, warming, precipitation, and shading by vascular plants), and compare empirical findings with model predictions of N2 -fixation using nine Earth system models. The majority of empirical studies found positive effects of CO2 , warming, precipitation, or light on nonvascular N2 -fixation, but N deposition strongly downregulated N2 -fixation in most empirical studies. Furthermore, we found that the responses of N2 -fixation to elevated CO2 were generally consistent between models and very limited empirical data. In contrast, empirical-model comparisons suggest that all models we assessed, and particularly those that scale N2 -fixation with net primary productivity or evapotranspiration, may be overestimating N2 -fixation under increasing N deposition. Overestimations could generate erroneous predictions of future N stocks in boreal ecosystems unless models adequately account for the drivers of nonvascular N2 -fixation. Based on our comparisons, we recommend that models explicitly treat nonvascular N2 -fixation and that field studies include more targeted measurements to improve model structures and parameterization.
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Affiliation(s)
- Stefan F Hupperts
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Stefan Gerber
- Soil and Water Sciences Department, University of Florida, Gainesville, FL, USA
| | - Marie-Charlotte Nilsson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
| | - Michael J Gundale
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
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28
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Kjønaas OJ, Bárcena TG, Hylen G, Nordbakken J, Økland T. Boreal tree species change as a climate mitigation strategy: impact on ecosystem C and N stocks and soil nutrient levels. Ecosphere 2021. [DOI: 10.1002/ecs2.3826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- O. Janne Kjønaas
- Norwegian Institute of Bioeconomy Research P. O. Box 115 NO‐1431 Ås Norway
| | - Teresa G. Bárcena
- Norwegian Institute of Bioeconomy Research P. O. Box 115 NO‐1431 Ås Norway
| | - Gro Hylen
- Norwegian Institute of Bioeconomy Research P. O. Box 115 NO‐1431 Ås Norway
| | | | - Tonje Økland
- Norwegian Institute of Bioeconomy Research P. O. Box 115 NO‐1431 Ås Norway
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29
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Stuart JEM, Holland-Moritz H, Jean M, Miller SN, Ponciano JM, McDaniel SF, Mack MC. The relationship of C and N stable isotopes to high-latitude moss-associated N 2 fixation. Oecologia 2021. [PMID: 34319437 DOI: 10.1007/s00442-021-05005-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 07/23/2021] [Indexed: 10/20/2022]
Abstract
Moss-associated N2 fixation by epiphytic microbes is a key biogeochemical process in nutrient-limited high-latitude ecosystems. Abiotic drivers, such as temperature and moisture, and the identity of host mosses are critical sources of variation in N2 fixation rates. An understanding of the potential interaction between these factors is essential for predicting N inputs as moss communities change with the climate. To further understand the drivers and results of N2 fixation rate variation, we obtained natural abundance values of C and N isotopes and an associated rate of N2 fixation with 15N2 gas incubations in 34 moss species collected in three regions across Alaska, USA. We hypothesized that δ15N values would increase toward 0‰ with higher N2 fixation to reflect the increasing contribution of fixed N2 in moss biomass. Second, we hypothesized that δ13C and N2 fixation would be positively related, as enriched δ13C signatures reflect abiotic conditions favorable to N2 fixation. We expected that the magnitude of these relationships would vary among types of host mosses, reflecting differences in anatomy and habitat. We found little support for our first hypothesis, with only a modest positive relationship between N2 fixation rates and δ15N in a structural equation model. We found a significant positive relationship between δ13C and N2 fixation only in Hypnales, where the probability of N2 fixation activity reached 95% when δ13C values exceeded - 30.4‰. We conclude that moisture and temperature interact strongly with host moss identity in determining the extent to which abiotic conditions impact associated N2 fixation rates.
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Grau‐Andrés R, Wardle DA, Nilsson M, Kardol P. Precipitation regime controls bryosphere carbon cycling similarly across contrasting ecosystems. OIKOS 2021. [DOI: 10.1111/oik.07749] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Roger Grau‐Andrés
- Dept of Forest Ecology and Management, Swedish Univ. of Agricultural Sciences (SLU) Umeå Sweden
| | - David A. Wardle
- Dept of Forest Ecology and Management, Swedish Univ. of Agricultural Sciences (SLU) Umeå Sweden
- Asian School of the Environment, Nanyang Technological Univ. Singapore Singapore
| | - Marie‐Charlotte Nilsson
- Dept of Forest Ecology and Management, Swedish Univ. of Agricultural Sciences (SLU) Umeå Sweden
| | - Paul Kardol
- Dept of Forest Ecology and Management, Swedish Univ. of Agricultural Sciences (SLU) Umeå Sweden
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Lucander K, Zanchi G, Akselsson C, Belyazid S. The Effect of Nitrogen Fertilization on Tree Growth, Soil Organic Carbon and Nitrogen Leaching—A Modeling Study in a Steep Nitrogen Deposition Gradient in Sweden. Forests 2021; 12:298. [DOI: 10.3390/f12030298] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Nitrogen (N) fertilization in forests has the potential to increase tree growth and carbon (C) sequestration, but it also means a risk of N leaching. Dynamic models can, if the important processes are well described, play an important role in assessing benefits and risks of nitrogen fertilization. The aim of this study was to test if the ForSAFE model is able to simulate correctly the effects of N fertilization when considering different levels of N availability in the forest. The model was applied for three sites in Sweden, representing low, medium and high nitrogen deposition. Simulations were performed for scenarios with and without fertilization. The effect of N fertilization on tree growth was largest at the low deposition site, whereas the effect on N leaching was more pronounced at the high deposition site. For soil organic carbon (SOC) the effects were generally small, but in the second forest rotation SOC was slightly higher after fertilization, especially at the low deposition site. The ForSAFE simulations largely confirm the N saturation theory which state that N will not be retained in the forest when the ecosystem is N saturated, and we conclude that the model can be a useful tool in assessing effects of N fertilization.
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Koranda M, Michelsen A. Mosses reduce soil nitrogen availability in a subarctic birch forest via effects on soil thermal regime and sequestration of deposited nitrogen. J Ecol 2021; 109:1424-1438. [PMID: 33776135 PMCID: PMC7986113 DOI: 10.1111/1365-2745.13567] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 12/01/2020] [Indexed: 05/16/2023]
Abstract
In high-latitude ecosystems bryophytes are important drivers of ecosystem functions. Alterations in abundance of mosses due to global change may thus strongly influence carbon (C) and nitrogen (N) cycling and hence cause feedback on climate. The effects of mosses on soil microbial activity are, however, still poorly understood. Our study aims at elucidating how and by which mechanisms bryophytes influence microbial decomposition processes of soil organic matter and thus soil nutrient availability.We present results from a field experiment in a subarctic birch forest in northern Sweden, where we partly removed the moss cover and replaced it with an artificial soil cover for simulating moss effects on soil temperature and moisture. We combined this with a fertilization experiment with 15N-labelled N for analysing the effects of moss N sequestration on soil processes.Our results demonstrate the capacity of mosses to reduce soil N availability and retard N cycling. The comparison with artificial soil cover plots suggests that the effect of mosses on N cycling is linked to the thermal insulation capacity of mosses causing low average soil temperature in summer and strongly reduced soil temperature fluctuations, the latter also leading to a decreased frequency of freeze-thaw events in autumn and spring. Our results also showed, however, that the negative temperature effect of mosses on soil microbial activity was in part compensated by stimulatory effects of the moss layer, possibly linked to leaching of labile substrates from the moss. Furthermore, our results revealed that bryophytes efficiently sequester added N from wet deposition and thus prevent effects of increased atmospheric N deposition on soil N availability and soil processes. Synthesis. Our study emphasizes the important role of mosses in carbon and nutrient cycling in high-latitude ecosystems and the potential strong impacts of reductions in moss abundance on microbial decomposition processes and nutrient availability in subarctic and boreal forests.
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Affiliation(s)
- Marianne Koranda
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagenDenmark
- Center for PermafrostUniversity of CopenhagenCopenhagenDenmark
- Division of Terrestrial Ecosystem ResearchCentre for Microbiology and Environmental Systems ScienceUniversity of ViennaViennaAustria
| | - Anders Michelsen
- Terrestrial Ecology SectionDepartment of BiologyUniversity of CopenhagenCopenhagenDenmark
- Center for PermafrostUniversity of CopenhagenCopenhagenDenmark
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Affiliation(s)
- Bjorn J. M. Robroek
- Aquatic Ecology and Environmental Biology, Inst. for Water and Wetland Research, Faculty of Science, Radboud Univ. Nijmegen Nijmegen the Netherlands
| | - Magalí Martí
- Thematic Studies – Environmental Change, Linköping Univ. Linköping Sweden
| | - Bo H. Svensson
- Thematic Studies – Environmental Change, Linköping Univ. Linköping Sweden
| | - Marc G. Dumont
- School of Biological Sciences, Faculty of Environmental and Life Sciences, Univ. of Southampton Southampton UK
| | - Annelies J. Veraart
- Aquatic Ecology and Environmental Biology, Inst. for Water and Wetland Research, Faculty of Science, Radboud Univ. Nijmegen Nijmegen the Netherlands
| | - Vincent E. J. Jassey
- Laboratoire d'Ecologie Fonctionnelle et Environnement, Univ. de Toulouse, CNRS Toulouse Cedex France
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Jean M, Holland-Moritz H, Melvin AM, Johnstone JF, Mack MC. Experimental assessment of tree canopy and leaf litter controls on the microbiome and nitrogen fixation rates of two boreal mosses. New Phytol 2020; 227:1335-1349. [PMID: 32299141 DOI: 10.1111/nph.16611] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 03/16/2020] [Indexed: 06/11/2023]
Abstract
Nitrogen (N2 )-fixing moss microbial communities play key roles in nitrogen cycling of boreal forests. Forest type and leaf litter inputs regulate moss abundance, but how they control moss microbiomes and N2 -fixation remains understudied. We examined the impacts of forest type and broadleaf litter on microbial community composition and N2 -fixation rates of Hylocomium splendens and Pleurozium schreberi. We conducted a moss transplant and leaf litter manipulation experiment at three sites with paired paper birch (Betula neoalaskana) and black spruce (Picea mariana) stands in Alaska. We characterized bacterial communities using marker gene sequencing, determined N2 -fixation rates using stable isotopes (15 N2 ) and measured environmental covariates. Mosses native to and transplanted into spruce stands supported generally higher N2 -fixation and distinct microbial communities compared to similar treatments in birch stands. High leaf litter inputs shifted microbial community composition for both moss species and reduced N2 -fixation rates for H. splendens, which had the highest rates. N2 -fixation was positively associated with several bacterial taxa, including cyanobacteria. The moss microbiome and environmental conditions controlled N2 -fixation at the stand and transplant scales. Predicted shifts from spruce- to deciduous-dominated stands will interact with the relative abundances of mosses supporting different microbiomes and N2 -fixation rates, which could affect stand-level N inputs.
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Affiliation(s)
- Mélanie Jean
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, 86011, USA
- Department of Biology, University of Saskatchewan, Saskatoon, SK, S7N 5E2, Canada
| | - Hannah Holland-Moritz
- Cooperative Institute for Research in Environmental Sciences and Department of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO, 80309, USA
| | - April M Melvin
- Department of Biology, University of Florida, Gainesville, FL, 32611, USA
- Independent researcher, Washington, DC, 20001, USA
| | - Jill F Johnstone
- Department of Biology, University of Saskatchewan, Saskatoon, SK, S7N 5E2, Canada
- Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, AK, 99775, USA
| | - Michelle C Mack
- Center for Ecosystem Science and Society, Northern Arizona University, Flagstaff, AZ, 86011, USA
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Stuart JEM, Holland-Moritz H, Lewis LR, Jean M, Miller SN, McDaniel SF, Fierer N, Ponciano JM, Mack MC. Host Identity as a Driver of Moss-Associated N2 Fixation Rates in Alaska. Ecosystems 2020. [DOI: 10.1007/s10021-020-00534-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Bouchard R, Peñaloza-bojacá G, Toupin S, Guadalupe Y, Gudiño J, Salazar Allen N, Li FW, Villarreal A. JC. Contrasting bacteriome of the hornwort Leiosporoceros dussii in two nearby sites with emphasis on the hornwort-cyanobacterial symbiosis. Symbiosis 2020; 81:39-52. [DOI: 10.1007/s13199-020-00680-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Pederson ERA, Warshan D, Rasmussen U. Genome Sequencing of Pleurozium schreberi: The Assembled and Annotated Draft Genome of a Pleurocarpous Feather Moss. G3 (Bethesda) 2019; 9:2791-7. [PMID: 31285273 DOI: 10.1534/g3.119.400279] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The pleurocarpous feather moss Pleurozium schreberi is a ubiquitous moss species which plays a fundamental role in many terrestrial ecosystems, for instance within the boreal forest, the Earth's largest terrestrial biome, this species plays a significant role in driving ecosystem nitrogen and carbon inputs and fluxes. By hosting dinitrogen (N2)-fixing cyanobacteria, the moss-cyanobacteria symbiosis constitutes the main nitrogen input into the ecosystem and by the high productivity and the low decomposability of the moss litter, P schreberi contributes significantly to build-up soil organic matter, and therefore long-term C sequestration. Knowledge on P. schreberi genome will facilitate the development of 'omics' and system's biology approaches to gain a more complete understanding of the physiology and ecological adaptation of the moss and the mechanisms underpinning the establishment of the symbiosis. Here we present the de novo assembly and annotation of P. schreberi genome that will help investigating these questions. The sequencing was performed using the HiSeq X platform with Illumina paired-end and mate-pair libraries prepared with CTAB extracted DNA. In total, the assembled genome was approximately 318 Mb, while repetitive elements account for 28.42% of the genome and 15,992 protein-coding genes were predicted from the genome, of which 84.23% have been functionally annotated. We anticipate that the genomic data generated will constitute a significant resource to study ecological and evolutionary genomics of P. schreberi, and will be valuable for evo-devo investigations as well as our understanding of the evolution of land plants by providing the genome of a pleurocarpous moss.
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Carrell AA, Kolton M, Glass JB, Pelletier DA, Warren MJ, Kostka JE, Iversen CM, Hanson PJ, Weston DJ. Experimental warming alters the community composition, diversity, and N 2 fixation activity of peat moss (Sphagnum fallax) microbiomes. Glob Chang Biol 2019; 25:2993-3004. [PMID: 31148286 PMCID: PMC6852288 DOI: 10.1111/gcb.14715] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Revised: 05/17/2019] [Accepted: 05/24/2019] [Indexed: 05/19/2023]
Abstract
Sphagnum-dominated peatlands comprise a globally important pool of soil carbon (C) and are vulnerable to climate change. While peat mosses of the genus Sphagnum are known to harbor diverse microbial communities that mediate C and nitrogen (N) cycling in peatlands, the effects of climate change on Sphagnum microbiome composition and functioning are largely unknown. We investigated the impacts of experimental whole-ecosystem warming on the Sphagnum moss microbiome, focusing on N2 fixing microorganisms (diazotrophs). To characterize the microbiome response to warming, we performed next-generation sequencing of small subunit (SSU) rRNA and nitrogenase (nifH) gene amplicons and quantified rates of N2 fixation activity in Sphagnum fallax individuals sampled from experimental enclosures over 2 years in a northern Minnesota, USA bog. The taxonomic diversity of overall microbial communities and diazotroph communities, as well as N2 fixation rates, decreased with warming (p < 0.05). Following warming, diazotrophs shifted from a mixed community of Nostocales (Cyanobacteria) and Rhizobiales (Alphaproteobacteria) to predominance of Nostocales. Microbiome community composition differed between years, with some diazotroph populations persisting while others declined in relative abundance in warmed plots in the second year. Our results demonstrate that warming substantially alters the community composition, diversity, and N2 fixation activity of peat moss microbiomes, which may ultimately impact host fitness, ecosystem productivity, and C storage potential in peatlands.
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Affiliation(s)
- Alyssa A. Carrell
- Bredesen Center for Interdisciplinary Research and Graduate EducationUniversity of TennesseeKnoxvilleTennessee
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennessee
| | - Max Kolton
- School of BiologyGeorgia Institute of TechnologyAtlantaGeorgia
| | - Jennifer B. Glass
- School of Earth and Atmospheric SciencesGeorgia Institute of TechnologyAtlantaGeorgia
| | | | - Melissa J. Warren
- School of Earth and Atmospheric SciencesGeorgia Institute of TechnologyAtlantaGeorgia
- Present address:
CH2MAtlantaGeorgia30328USA
| | - Joel E. Kostka
- School of BiologyGeorgia Institute of TechnologyAtlantaGeorgia
- School of Earth and Atmospheric SciencesGeorgia Institute of TechnologyAtlantaGeorgia
| | - Colleen M. Iversen
- Environmental Sciences DivisionOak Ridge National LaboratoryOak RidgeTennessee
- Climate Change Science Institute, Oak Ridge National LaboratoryOak RidgeTennessee
| | - Paul J. Hanson
- Environmental Sciences DivisionOak Ridge National LaboratoryOak RidgeTennessee
- Climate Change Science Institute, Oak Ridge National LaboratoryOak RidgeTennessee
| | - David J. Weston
- Biosciences DivisionOak Ridge National LaboratoryOak RidgeTennessee
- Climate Change Science Institute, Oak Ridge National LaboratoryOak RidgeTennessee
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Hedwall P, Holmström E, Lindbladh M, Felton A. Concealed by darkness: How stand density can override the biodiversity benefits of mixed forests. Ecosphere 2019. [DOI: 10.1002/ecs2.2835] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- P.‐O. Hedwall
- Southern Swedish Forest Research Center Swedish University of Agricultural Sciences Sundsvägen 3 Alnarp 230 53 Sweden
| | - E. Holmström
- Southern Swedish Forest Research Center Swedish University of Agricultural Sciences Sundsvägen 3 Alnarp 230 53 Sweden
| | - M. Lindbladh
- Southern Swedish Forest Research Center Swedish University of Agricultural Sciences Sundsvägen 3 Alnarp 230 53 Sweden
| | - A. Felton
- Southern Swedish Forest Research Center Swedish University of Agricultural Sciences Sundsvägen 3 Alnarp 230 53 Sweden
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Jean M, Melvin AM, Mack MC, Johnstone JF. Broadleaf Litter Controls Feather Moss Growth in Black Spruce and Birch Forests of Interior Alaska. Ecosystems 2019. [DOI: 10.1007/s10021-019-00384-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Fanin N, Kardol P, Farrell M, Kempel A, Ciobanu M, Nilsson MC, Gundale MJ, Wardle DA. Effects of plant functional group removal on structure and function of soil communities across contrasting ecosystems. Ecol Lett 2019; 22:1095-1103. [PMID: 30957419 DOI: 10.1111/ele.13266] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 01/10/2019] [Accepted: 03/15/2019] [Indexed: 01/09/2023]
Abstract
Loss of plant diversity has an impact on ecosystems worldwide, but we lack a mechanistic understanding of how this loss may influence below-ground biota and ecosystem functions across contrasting ecosystems in the long term. We used the longest running biodiversity manipulation experiment across contrasting ecosystems in existence to explore the below-ground consequences of 19 years of plant functional group removals for each of 30 contrasting forested lake islands in northern Sweden. We found that, against expectations, the effects of plant removals on the communities of key groups of soil organisms (bacteria, fungi and nematodes), and organic matter quality and soil ecosystem functioning (decomposition and microbial activity) were relatively similar among islands that varied greatly in productivity and soil fertility. This highlights that, in contrast to what has been shown for plant productivity, plant biodiversity loss effects on below-ground functions can be relatively insensitive to environmental context or variation among widely contrasting ecosystems.
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Affiliation(s)
- Nicolas Fanin
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901-83, Umeå, Sweden.,INRA, UMR 1391 ISPA, Bordeaux Sciences Agro, 71 avenue Edouard Bourlaux, CS, 20032, F33882, Villenave-d'Ornon cedex, France
| | - Paul Kardol
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901-83, Umeå, Sweden
| | - Mark Farrell
- CSIRO Agriculture & Food, Locked bag 2, Glen Osmond, SA, 5064, Australia
| | - Anne Kempel
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901-83, Umeå, Sweden.,University of Bern, Institute of Plant Sciences, Altenbergrain 21, 3013, Bern, Switzerland
| | - Marcel Ciobanu
- Institute of Biological Research, Branch of the National Institute of Research and Development for Biological Sciences, Str. Republicii 48, Cluj-Napoca, Romania
| | - Marie-Charlotte Nilsson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901-83, Umeå, Sweden
| | - Michael J Gundale
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901-83, Umeå, Sweden
| | - David A Wardle
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, 901-83, Umeå, Sweden.,Asian School of the Environment, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798
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Salemaa M, Lindroos AJ, Merilä P, Mäkipää R, Smolander A. N 2 fixation associated with the bryophyte layer is suppressed by low levels of nitrogen deposition in boreal forests. Sci Total Environ 2019; 653:995-1004. [PMID: 30759623 DOI: 10.1016/j.scitotenv.2018.10.364] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 10/25/2018] [Accepted: 10/27/2018] [Indexed: 06/09/2023]
Abstract
Biological fixation of atmospheric nitrogen (N2) by bryophyte-associated cyanobacteria is an important source of plant-available N in the boreal biome. Information on the factors that drive biological N2 fixation (BNF) rates is needed in order to understand the N dynamics of forests under a changing climate. We assessed the potential of several cryptogam species (the feather mosses Hylocomium splendens and Pleurozium schreberi, a group of Dicranum bryophytes, two liverworts, and Cladina lichens) to serve as associates of cyanobacteria or other N2-fixing bacteria (diazotrophs) using acetylene reduction assay (ARA). We tested the hypotheses that the legacy of chronic atmospheric N deposition reduces BNF in the three bryophyte species, sampled from 12 coniferous forests located at latitudes 60-68° N in Finland. In addition, we tested the effect of moisture and temperature on BNF. All species studied showed a BNF signal in the north, with the highest rates in feather mosses. In moss samples taken along the north-south gradient with an increasing N bulk deposition from 0.8 to 4.4 kg ha-1 year-1, we found a clear decrease in BNF in both feather mosses and Dicranum group. BNF turned off at N deposition of 3-4 kg ha-1 year-1. Inorganic N (NH4-N + NO3-N) best predicted the BNF rate among regression models with different forms of N deposition as explanatory variables. However, in southern spruce stands, tree canopies modified the N in throughfall so that dissolved organic N (DON) leached from canopies compensated for inorganic N retained therein. Here, both DON and inorganic N negatively affected BNF in H. splendens. In laboratory experiments, BNF increased with increasing temperature and moisture. Our results suggest that even relatively low N deposition suppresses BNF in bryophyte-associated diazotrophs. Further, BNF could increase in northern low-deposition areas, especially if climate warming leads to moister conditions, as predicted.
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Affiliation(s)
- Maija Salemaa
- Natural Resources Institute Finland (Luke), Latokartanonkaari 9, FI-00790 Helsinki, Finland.
| | - Antti-Jussi Lindroos
- Natural Resources Institute Finland (Luke), Latokartanonkaari 9, FI-00790 Helsinki, Finland
| | - Päivi Merilä
- Natural Resources Institute Finland (Luke), P.O. Box 413, FI-90570 Oulu, Finland
| | - Raisa Mäkipää
- Natural Resources Institute Finland (Luke), Latokartanonkaari 9, FI-00790 Helsinki, Finland
| | - Aino Smolander
- Natural Resources Institute Finland (Luke), Latokartanonkaari 9, FI-00790 Helsinki, Finland
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Shaw AJ, Carter BE, Aguero B, da Costa DP, Crowl AA. Range change evolution of peat mosses (Sphagnum) within and between climate zones. Glob Chang Biol 2019; 25:108-120. [PMID: 30346105 DOI: 10.1111/gcb.14485] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Revised: 08/28/2018] [Accepted: 08/29/2018] [Indexed: 06/08/2023]
Abstract
Peat mosses (Sphagnum) hold exceptional importance in the control of global carbon fluxes and climate because of the vast stores of carbon bound up in partially decomposed biomass (peat). This study tests the hypothesis that the early diversification of Sphagnum was in the Northern Hemisphere, with subsequent range expansions to tropical latitudes and the Southern Hemisphere. A phylogenetic analysis of 192 accessions representing the moss class Sphagnopsida based on four plastid loci was conducted in conjunction with biogeographic analyses using BioGeoBEARS to investigate the tempo and mode of geographic range evolution. Analyses support the hypothesis that the major intrageneric clades of peat-forming species accounting for >90% of peat moss diversity originated and diversified at northern latitudes. The genus underwent multiple range expansions into tropical and Southern Hemisphere regions. Range evolution in peat mosses was most common within latitudinal zones, attesting to the relative difficulty of successfully invading new climate zones. Allopolyploidy in Sphagnum (inferred from microsatellite heterozygosity) does not appear to be biased with regard to geographic region nor intrageneric clade. The inference that Sphagnum diversified in cool-or cold-climate regions and repeatedly expanded its range into tropical regions makes the genus an excellent model for studying morphological, physiological, and genomic traits associated with adaptation to warming climates.
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Affiliation(s)
- A Jonathan Shaw
- Department of Biology, Duke University, Durham, North Carolina
| | - Benjamin E Carter
- Department of Biological Sciences, San Jose State University, San Jose, California
| | - Blanka Aguero
- Department of Biology, Duke University, Durham, North Carolina
| | | | - Andrew A Crowl
- Department of Biology, Duke University, Durham, North Carolina
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Wang R, Li X, Hou L, Liu M, Zheng Y, Yin G, Yang Y. Nitrogen fixation in surface sediments of the East China Sea: Occurrence and environmental implications. Mar Pollut Bull 2018; 137:542-548. [PMID: 30503466 DOI: 10.1016/j.marpolbul.2018.10.063] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 10/30/2018] [Accepted: 10/31/2018] [Indexed: 06/09/2023]
Abstract
Sediment nitrogen fixation and associated functional gene in the East China Sea were investigated using nitrogen-isotope tracing and molecular techniques. Potential rates of nitrogen fixation were detected, with values of 0.06-5.51 nmol N g-1 h-1. Abundance of functional gene (nifH) ranged from 0.36 × 106 to 5.39 × 107 copies g-1. Nitrogen fixation rates were not related to the abundance of nifH gene but to temperature, salinity, sulfide, iron and C/N, indicating that the sediment properties rather than microbial abundance dominated the nitrogen fixation. It is also estimated that sediment nitrogen fixation annually contributed about 3.43 × 105 to 3.10 × 107 tons nitrogen to the East China Sea, which accounted for 8.2-22.6% of the total inorganic nitrogen input. Overall, this study highlights the importance of benthic nitrogen fixation in controlling nitrogen budget in the East China Sea and improves our knowledge on nitrogen cycling in the coastal marine environments.
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Affiliation(s)
- Rong Wang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China
| | - Xiaofei Li
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou 350007, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China.
| | - Min Liu
- Key Laboratory of Geographic Information Science (Ministry of Education), School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science (Ministry of Education), School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Guoyu Yin
- Key Laboratory of Geographic Information Science (Ministry of Education), School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Yi Yang
- Key Laboratory of Geographic Information Science (Ministry of Education), School of Geographic Sciences, East China Normal University, Shanghai 200241, China
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Kox MAR, Aalto SL, Penttilä T, Ettwig KF, Jetten MSM, van Kessel MAHJ. The influence of oxygen and methane on nitrogen fixation in subarctic Sphagnum mosses. AMB Express 2018; 8:76. [PMID: 29730829 PMCID: PMC5936483 DOI: 10.1186/s13568-018-0607-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2018] [Accepted: 04/28/2018] [Indexed: 11/10/2022] Open
Abstract
Biological nitrogen fixation is an important source of bioavailable nitrogen in Sphagnum dominated peatlands. Sphagnum mosses harbor a diverse microbiome including nitrogen-fixing and methane (CH4) oxidizing bacteria. The inhibitory effect of oxygen on microbial nitrogen fixation is documented for many bacteria. However, the role of nitrogen-fixing methanotrophs in nitrogen supply to Sphagnum peat mosses is not well explored. Here, we investigated the role of both oxygen and methane on nitrogen fixation in subarctic Sphagnum peat mosses. Five species of Sphagnum mosses were sampled from two mesotrophic and three oligotrophic sites within the Lakkasuo peatland in Orivesi, central Finland. Mosses were incubated under either ambient or low oxygen conditions in the presence or absence of methane. Stable isotope activity assays revealed considerable nitrogen-fixing and methane-assimilating rates at all sites (1.4 ± 0.2 µmol 15N-N2 g-1 DW day-1 and 12.0 ± 1.1 µmol 13C-CH4 g-1 DW day-1, respectively). Addition of methane did not stimulate incorporation of 15N-nitrogen into biomass, whereas oxygen depletion increased the activity of the nitrogen-fixing community. Analysis of the 16S rRNA genes at the bacterial community level showed a very diverse microbiome that was dominated by Alphaproteobacteria in all sites. Bona fide methane-oxidizing taxa were not very abundant (relative abundance less than 0.1%). Based on our results we conclude that methanotrophs did not contribute significantly to nitrogen fixation in the investigated peatlands.
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Affiliation(s)
- Martine A. R. Kox
- Department of Microbiology, Radboud University, Nijmegen, The Netherlands
| | - Sanni L. Aalto
- Department of Biological and Environmental Science, University of Jyväskylä, PO Box 35, 40014 Jyväskylä, Finland
- Department of Environmental and Biological Sciences, University of Eastern Finland, PO Box 1627, 70211 Kuopio, Finland
| | - Timo Penttilä
- Natural Resources Institute Finland, PO Box 2, 00791 Helsinki, Finland
| | | | - Mike S. M. Jetten
- Department of Microbiology, Radboud University, Nijmegen, The Netherlands
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Liu S, Liu W, Shi X, Li S, Hu T, Song L, Wu C. Dry-hot stress significantly reduced the nitrogenase activity of epiphytic cyanolichen. Sci Total Environ 2018; 619-620:630-637. [PMID: 29156281 DOI: 10.1016/j.scitotenv.2017.11.179] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 11/15/2017] [Accepted: 11/15/2017] [Indexed: 06/07/2023]
Abstract
Nitrogen (N) fixed by epiphytic cyanolichens (i.e. lichens that contain cyanobacterial symbionts) is thought to be the most important resource of this nutrient in some natural forest ecosystems. Although a great deal of work has been carried out to evaluate the biomass of this group as well as its contribution to ecosystem N budgets, empirical studies are needed to confirm the N input responses by cyanolichens under climate change conditions (dry-hot stress) as well as to determine the factors that control this process. We simulated climate change conditions by transplanting Lobaria retigera, a common cyanolichen in the area, to lower elevations, and measured nitrogenase activity in response to warmer and drier conditions. In addition, we conducted a series of laboratory and greenhouse experiments to determine the dominant factors influencing nitrogenase activity in this species. The results of this study show that mean annual nitrogenase activity at the higher site was 1.5 and 2.4 times that at the simulated warmer and drier (middle and lower) sites, respectively. Combining laboratory experimental conclusions, we show that thallus water content is a key factor determining the nitrogenase activity of L. retigera in early transplantation while insufficient carbon storage resulting from a combination of warming and desiccation was likely responsible for reducing nitrogenase activity in later months of the transplant experiment. The results of this study imply that the negative impact of climate change (dry-hot stress) on ecosystems not only impacts the distribution and growth of species, but also nutrient circles and budgets.
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Affiliation(s)
- Shuai Liu
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Wenyao Liu
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China.
| | - Xianmeng Shi
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Su Li
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China
| | - Tao Hu
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Liang Song
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China
| | - Chuansheng Wu
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, Yunnan 650223, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China; Ailaoshan Station for Subtropical Forest Ecosystem Studies, Jingdong 676209, PR China
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Kohl L, Philben M, Edwards KA, Podrebarac FA, Warren J, Ziegler SE. The origin of soil organic matter controls its composition and bioreactivity across a mesic boreal forest latitudinal gradient. Glob Chang Biol 2018; 24:e458-e473. [PMID: 28871609 DOI: 10.1111/gcb.13887] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 08/22/2017] [Indexed: 06/07/2023]
Abstract
Warmer climates have been associated with reduced bioreactivity of soil organic matter (SOM) typically attributed to increased diagenesis; the combined biological and physiochemical transformation of SOM. In addition, cross-site studies have indicated that ecosystem regime shifts, associated with long-term climate warming, can affect SOM properties through changes in vegetation and plant litter production thereby altering the composition of soil inputs. The relative importance of these two controls, diagenesis and inputs, on SOM properties as ecosystems experience climate warming, however, remains poorly understood. To address this issue we characterized the elemental, chemical (nuclear magnetic resonance spectroscopy and total hydrolysable amino acids analysis), and isotopic composition of plant litter and SOM across a well-constrained mesic boreal forest latitudinal transect in Atlantic Canada. Results across forest sites within each of three climate regions indicated that (1) climate history and diagenesis affect distinct parameters of SOM chemistry, (2) increases in SOM bioreactivity with latitude were associated with elevated proportions of carbohydrates relative to plant waxes and lignin, and (3) despite the common forest type across regions, differences in SOM chemistry by climate region were associated with chemically distinct litter inputs and not different degrees of diagenesis. The observed climate effects on vascular plant litter chemistry, however, explained only part of the regional differences in SOM chemistry, most notably the higher protein content of SOM from warmer regions. Greater proportions of lignin and aliphatic compounds and smaller proportions of carbohydrates in warmer sites' soils were explained by the higher proportion of vascular plant relative to moss litter in the warmer relative to cooler forests. These results indicate that climate change induced decreases in the proportion of moss inputs not only impacts SOM chemistry but also increases the resistance of SOM to decomposition, thus significantly altering SOM cycling in these boreal forest soils.
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Affiliation(s)
- Lukas Kohl
- Department of Earth Sciences, Memorial University, St. John's, NL, Canada
| | - Michael Philben
- Department of Earth Sciences, Memorial University, St. John's, NL, Canada
| | - Kate A Edwards
- Natural Resources Canada, Canadian Forest Service, Atlantic Forestry Centre, Corner Brook, NL, Canada
| | | | - Jamie Warren
- Department of Earth Sciences, Memorial University, St. John's, NL, Canada
| | - Susan E Ziegler
- Department of Earth Sciences, Memorial University, St. John's, NL, Canada
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Weston DJ, Turetsky MR, Johnson MG, Granath G, Lindo Z, Belyea LR, Rice SK, Hanson DT, Engelhardt KAM, Schmutz J, Dorrepaal E, Euskirchen ES, Stenøien HK, Szövényi P, Jackson M, Piatkowski BT, Muchero W, Norby RJ, Kostka JE, Glass JB, Rydin H, Limpens J, Tuittila ES, Ullrich KK, Carrell A, Benscoter BW, Chen JG, Oke TA, Nilsson MB, Ranjan P, Jacobson D, Lilleskov EA, Clymo RS, Shaw AJ. The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project. New Phytol 2018; 217:16-25. [PMID: 29076547 DOI: 10.1111/nph.14860] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Considerable progress has been made in ecological and evolutionary genetics with studies demonstrating how genes underlying plant and microbial traits can influence adaptation and even 'extend' to influence community structure and ecosystem level processes. Progress in this area is limited to model systems with deep genetic and genomic resources that often have negligible ecological impact or interest. Thus, important linkages between genetic adaptations and their consequences at organismal and ecological scales are often lacking. Here we introduce the Sphagnome Project, which incorporates genomics into a long-running history of Sphagnum research that has documented unparalleled contributions to peatland ecology, carbon sequestration, biogeochemistry, microbiome research, niche construction, and ecosystem engineering. The Sphagnome Project encompasses a genus-level sequencing effort that represents a new type of model system driven not only by genetic tractability, but by ecologically relevant questions and hypotheses.
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Affiliation(s)
- David J Weston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
- Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Merritt R Turetsky
- Department of Integrative Biology, University of Guelph, Guelph, ON, N1G 2W1, Canada
| | - Matthew G Johnson
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79414, USA
| | - Gustaf Granath
- Department of Ecology, Swedish University of Agricultural Sciences, Box 7044, SE-750 07, Uppsala, Sweden
| | - Zoë Lindo
- Department of Biology, The University of Western Ontario, London, ON, N6A 5B7, Canada
| | - Lisa R Belyea
- School of Geography, Queen Mary University of London, London, E1 4NS, UK
| | - Steven K Rice
- Department of Biological Sciences, Union College, Schenectady, NY, 12308, USA
| | - David T Hanson
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Katharina A M Engelhardt
- Appalachian Lab, University of Maryland Center of Environmental Science, Frostburg, MD, 21532, USA
| | - Jeremy Schmutz
- HudsonAlpha Institute of Biotechnology, Huntsville, AL, 35806, USA
- Department of Energy Joint Genome Institute, Walnut Creek, CA, 94598, USA
| | - Ellen Dorrepaal
- Climate Impacts Research Center, Department of Ecology and Environmental Science, Umeå University, 98107, Abisko, Sweden
| | | | - Hans K Stenøien
- NTNU University Museum, Norwegian University of Science and Technology, NO-7491, Trondheim, Norway
| | - Péter Szövényi
- Department of Systematic and Evolutionary Botany, University of Zurich, 8008, Zurich, Switzerland
| | | | | | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Richard J Norby
- Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
- Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Joel E Kostka
- Schools of Biology and Earth & Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Jennifer B Glass
- Schools of Biology and Earth & Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Håkan Rydin
- Department of Ecology and Genetics, Uppsala University, Norbyvägen 18D, SE-75236, Uppsala, Sweden
| | - Juul Limpens
- Plant Ecology and Nature Conservation Group, Department of Environmental Sciences, Wageningen University, Droevendaalse steeg 3a, NL-6708 PD, Wageningen, the Netherlands
| | - Eeva-Stiina Tuittila
- Peatland and Soil Ecology Group, School of Forest Sciences, University of Eastern Finland, Joensuu, Finland
| | | | - Alyssa Carrell
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Brian W Benscoter
- Department of Biological Sciences, Florida Atlantic University, Davie, FL, 33314, USA
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Tobi A Oke
- Department of Integrative Biology, University of Guelph, Guelph, ON, N1G 2W1, Canada
| | - Mats B Nilsson
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Skogsmarksgränd, SE-901 83, Umeå, Sweden
| | - Priya Ranjan
- Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Drive, Knoxville, TN, 37996-4561, USA
| | - Daniel Jacobson
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Erik A Lilleskov
- US Forest Service, Northern Research Station, 410 MacInnes Dr., Houghton, MI, 49931, USA
| | - R S Clymo
- School of Biological & Chemical Sciences, Queen Mary University of London, London, E1 4NS, UK
| | - A Jonathan Shaw
- Department of Biology, Duke University, Durham, NC, 27708, USA
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Abstract
Evolution is a fundamental ecosystem process. The study of genomic variation of organisms can not only improve our understanding of evolutionary processes, but also of contemporary and future ecosystem dynamics. We argue that integrative research between the fields of genomics and ecosystem ecology could generate new insights. Specifically, studies of biodiversity and ecosystem functioning, evolutionary rescue, and eco-evolutionary dynamics could all benefit from information about variation in genome structure and the genetic architecture of traits, whereas genomic studies could benefit from information about the ecological context of evolutionary dynamics. We propose new ways to help link research on functional genomic diversity with (reciprocal) interactions between phenotypic evolution and ecosystem change. Despite numerous challenges, we anticipate that the wealth of genomic data being collected on natural populations will improve our understanding of ecosystems.
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Affiliation(s)
- Blake Matthews
- a Eawag, Department of Aquatic Ecology, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland
| | - Rebecca J Best
- a Eawag, Department of Aquatic Ecology, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland.,b School of Earth Sciences and Environmental Sustainability, Northern Arizona University, 525 S. Beaver Street, Flagstaff, AZ 86011, USA
| | - Philine G D Feulner
- c Eawag, Department of Fish Ecology and Evolution, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland.,d University of Bern, Division of Aquatic Ecology and Evolution, Institute of Ecology and Evolution, Bern, Switzerland
| | - Anita Narwani
- a Eawag, Department of Aquatic Ecology, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland
| | - Romana Limberger
- a Eawag, Department of Aquatic Ecology, Center for Ecology, Evolution and Biogeochemistry, Kastanienbaum, Switzerland.,e Research Institute for Limnology, University of Innsbruck, Mondsee, Austria
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50
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Hedwall PO, Bergh J, Brunet J. Phosphorus and nitrogen co-limitation of forest ground vegetation under elevated anthropogenic nitrogen deposition. Oecologia 2017; 185:317-326. [PMID: 28884383 PMCID: PMC5617880 DOI: 10.1007/s00442-017-3945-x] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2017] [Accepted: 08/29/2017] [Indexed: 11/22/2022]
Abstract
Plant growth in northern forest ecosystems is considered to be primarily nitrogen limited. Nitrogen deposition is predicted to change this towards co-limitation/limitation by other nutrients (e.g., phosphorus), although evidence of such stoichiometric effects is scarce. We utilized two forest fertilization experiments in southern Sweden to analyze single and combined effects of nitrogen and phosphorus on the productivity, composition, and diversity of the ground vegetation. Our results indicate that the productivity of forest ground vegetation in southern Sweden is co-limited by nitrogen and phosphorus. Additionally, the combined effect of nitrogen and phosphorus on the productivity was larger than when applied solely. No effects on species richness of any of these two nutrients were observed when applied separately, while applied in combination, they increased species richness and changed species composition, mainly by promoting more mesotrophic species. All these effects, however, occurred only for the vascular plants and not for bryophytes. The tree layer in a forest has a profound impact on the productivity and diversity of the ground vegetation by competing for both light and nutrients. This was confirmed in our study where a combination of nitrogen and high tree basal area reduced cover of the ground vegetation compared to all the other treatments where basal area was lower after stand thinning. During the past decades, nitrogen deposition may have further increased this competition from the trees for phosphorus and gradually reduced ground vegetation diversity. Phosphorus limitation induced by nitrogen deposition may, thus, contribute to ongoing changes in forest ground vegetation.
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Affiliation(s)
- Per-Ola Hedwall
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53, Alnarp, Sweden.
| | - Johan Bergh
- Department of Forestry and Wood Technology, Linnaeus University, 351 95, Växjö, Sweden
| | - Jörg Brunet
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, Sundsvägen 3, 230 53, Alnarp, Sweden
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