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Kuczera K, Orłowska A, Smreczak M, Frant M, Trębas P, Rola J. Prevalence of Astroviruses in Different Animal Species in Poland. Viruses 2024; 16:80. [PMID: 38257780 PMCID: PMC10819871 DOI: 10.3390/v16010080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Revised: 12/28/2023] [Accepted: 01/01/2024] [Indexed: 01/24/2024] Open
Abstract
Astroviruses (AstVs) are small RNA viruses characterized by a high mutation rate, the ability to recombine, and interspecies transmission, which allows them to infect a multitude of hosts including humans, companion animals, and farmed animals as well as wildlife. AstVs are stable in the environment, and their transmission is usually through the fecal-oral route or via contaminated water and food. Although direct zoonotic transmission was not confirmed, interspecies transmission events have occurred or have been indicated to occur in the past between wild and domestic animals and humans. They cause large economic losses, mainly in the poultry sector, due to gastroenteritis and mortality. In young children, they are the second most common cause of diarrhea. This study involved 166 intestine samples and pools of spleen, lymph node, and kidney samples collected from 352 wild animals, 52 pigs, and 31 companion animals. Astroviruses were detected in the intestine samples and were separately detected in pools of tissue samples prepared for individual animals using a heminested RT-PCR protocol. Amplicons were subjected to Sanger sequencing, and a phylogenetic analysis of 320 nt RNA-dependent RNA polymerase (RdRp) fragments referring to known nt sequences of astroviruses was performed. Astroviral RNA was detected in the intestine samples and/or tissue pools of red foxes (nine positive intestines and six positive tissue pools), rats (two positive intestines and three positive tissue pools), a cat (one AstV detected in an intestine sample), pigs (eight positive tissue pools), and wild boars (two positive pools of spleens, kidneys, and lymph nodes). No astroviral RNA was detected in wild mustelids, dogs, or other small wild animals including rodents. A phylogenetic analysis revealed that the astroviruses detected during this study were mostly host-specific, such as porcine, canine, and rat astroviruses that were highly homologous to the sequences of reference strains. In one of two wild boars, an AstV distinct to porcine species was found with the highest nt identity to Avastroviruses, i.e., turkey astroviruses, which suggests potential cross-species transmission of the virus, as previously described. Here, we present the first detection of astroviruses in the population of wild animals, companion animals, and pigs in Poland, confirming that astroviruses are frequent pathogens circulating in animals in the field. Our study also suggests potential cross-species transmission of Avaastrovirus to wild boars; however, further molecular characterization is needed.
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Affiliation(s)
- Konrad Kuczera
- Voivodship Veterinary Inspectorate Katowice, ul. Brynowska 25a, 40-585 Katowice, Poland;
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
| | - Maciej Frant
- Department of Swine Diseases, National Veterinary Research Institute, 24-100 Puławy, Poland;
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
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Dafalla M, Orłowska A, Keleş SJ, Straková P, Schlottau K, Jeske K, Hoffmann B, Wibbelt G, Smreczak M, Müller T, Freuling CM, Wang X, Rola J, Drewes S, Fereidouni S, Heckel G, Ulrich RG. Hantavirus Brno loanvirus is highly specific to the common noctule bat (Nyctalus noctula) and widespread in Central Europe. Virus Genes 2023; 59:323-332. [PMID: 36542315 PMCID: PMC10025241 DOI: 10.1007/s11262-022-01952-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 10/29/2022] [Indexed: 12/24/2022]
Abstract
Bat-associated hantaviruses have been detected in Asia, Africa and Europe. Recently, a novel hantavirus (Brno loanvirus, BRNV) was identified in common noctule bats (Nyctalus noctula) in the Czech Republic, but nothing is known about its geographical range and prevalence. The objective of this study was to evaluate the distribution and host specificity of BRNV by testing bats from neighbouring countries Germany, Austria and Poland. One thousand forty-seven bats representing 21 species from Germany, 464 bats representing 18 species from Austria and 77 bats representing 12 species from Poland were screened by L segment broad-spectrum nested reverse transcription-polymerase chain reaction (RT-PCR) or by BRNV-specific real-time RT-PCR. Three common noctules from Germany, one common noctule from Austria and three common noctules from Poland were positive in the hantavirus RNA screening. Conventional RT-PCR and primer walking resulted in the amplification of partial L segment and (almost) complete S and M segment coding sequences for samples from Germany and partial L segment sequences for samples from Poland. Phylogenetic analysis of these nucleotide sequences showed highest similarity to BRNV from Czech Republic. The exclusive detection of BRNV in common noctules from different countries suggests high host specificity. The RNA detection rate in common noctules ranged between 1 of 207 (0.5%; Austria), 3 of 245 (1.2%; Germany) and 3 of 20 (15%; Poland). In conclusion, this study demonstrates a broader distribution of BRNV in common noctules in Central Europe, but at low to moderate prevalence. Additional studies are needed to prove the zoonotic potential of this hantavirus and evaluate its transmission within bat populations.
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Affiliation(s)
- Maysaa Dafalla
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 57 Partyzantów Avenue, 24-100, Pulawy, Poland
| | - Sinan Julian Keleş
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, Savoyenstraße 1a, 1160, Vienna, Austria
| | - Petra Straková
- Veterinary Research Institute, Hudcova 296/70, 621 00, Brno, Czech Republic
| | - Kore Schlottau
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Kathrin Jeske
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Bernd Hoffmann
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Gudrun Wibbelt
- Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Straße 17, 10315, Berlin, Germany
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 57 Partyzantów Avenue, 24-100, Pulawy, Poland
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Conrad Martin Freuling
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Xuejing Wang
- Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012, Bern, Switzerland
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, 57 Partyzantów Avenue, 24-100, Pulawy, Poland
| | - Stephan Drewes
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany
| | - Sasan Fereidouni
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, Savoyenstraße 1a, 1160, Vienna, Austria
| | - Gerald Heckel
- Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012, Bern, Switzerland
- Quartier Sorge - Batiment Amphipole, Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland
| | - Rainer G Ulrich
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493, Greifswald-Insel Riems, Germany.
- German Center for Infection Research (DZIF), Partner Site Hamburg-Lübeck-Borstel-Riems, Südufer 10, 17493, Greifswald-Insel Riems, Germany.
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Domańska-Blicharz K, Oude Munnink BB, Orłowska A, Smreczak M, Opolska J, Lisowska A, Trębas P, Socha W, Giza A, Bomba A, Iwan E, Rola J, Koopmans M. Cryptic SARS-CoV-2 lineage identified on two mink farms as a possible result of long-term undetected circulation in an unknown animal reservoir, Poland, November 2022 to January 2023. Euro Surveill 2023; 28. [PMID: 37078885 DOI: 10.2807/1560-7917.es.2023.28.16.2300188] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/21/2023] Open
Abstract
In late 2022 and early 2023, SARS-CoV-2 infections were detected on three mink farms in Poland situated within a few km from each other. Whole-genome sequencing of the viruses on two of the farms showed that they were related to a virus identified in humans in the same region 2 years before (B.1.1.307 lineage). Many mutations were found, including in the S protein typical of adaptations to the mink host. The origin of the virus remains to be determined.
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Affiliation(s)
| | - Bas B Oude Munnink
- Department of Viroscience, Erasmus University Medical Centre, Rotterdam, the Netherlands
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Justyna Opolska
- Department of Poultry Diseases, National Veterinary Research Institute, Puławy, Poland
| | - Anna Lisowska
- Department of Poultry Diseases, National Veterinary Research Institute, Puławy, Poland
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Wojciech Socha
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Aleksandra Giza
- Department of Omics Analyses, National Veterinary Research Institute, Puławy, Poland
| | - Arkadiusz Bomba
- Department of Omics Analyses, National Veterinary Research Institute, Puławy, Poland
| | - Ewelina Iwan
- Department of Omics Analyses, National Veterinary Research Institute, Puławy, Poland
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Marion Koopmans
- Department of Viroscience, Erasmus University Medical Centre, Rotterdam, the Netherlands
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Smreczak M, Orłowska A, Trębas P, Stolarek A, Freuling C, Müller T. Re-emergence of rabies in Mazowieckie Voivodeship, Poland, 2021. Zoonoses Public Health 2023; 70:111-116. [PMID: 36225087 DOI: 10.1111/zph.13005] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 09/19/2022] [Indexed: 01/07/2023]
Abstract
Due to the oral vaccination of foxes against rabies most of the territory of Poland was freed from rabies of non-flying mammals. In January 2021, rabies was diagnosed in fox in the central part of Mazowieckie Voivodeship where rabies has not been detected since last 17 years. Subsequently, in the following months the rabies virus infection spread southward reaching the voivodeship of Świętokrzyskie in November 2021. Emergency actions were implemented aiming at rapid rabies elimination.
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Affiliation(s)
- Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Agnieszka Stolarek
- Department of Epidemiology and Risk Assessment, National Veterinary Research Institute, Puławy, Poland
| | - Conrad Freuling
- Institute for Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Thomas Müller
- Institute for Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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Orłowska A, Smreczak M, Thor K, Niedbalska M, Pawelec D, Trębas P, Rola J. The Genetic Characterization of the First Detected Bat Coronaviruses in Poland Revealed SARS-Related Types and Alphacoronaviruses. Viruses 2022; 14:v14091914. [PMID: 36146721 PMCID: PMC9501061 DOI: 10.3390/v14091914] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 08/18/2022] [Accepted: 08/27/2022] [Indexed: 11/16/2022] Open
Abstract
Bats are a major global reservoir of alphacoronaviruses (alphaCoVs) and betaCoVs. Attempts to discover the causative agents of COVID-19 and SARS have revealed horseshoe bats (Rhinolophidae) to be the most probable source of the virus. We report the first detection of bat coronaviruses (BtCoVs) in insectivorous bats in Poland and highlight SARS-related coronaviruses found in Rhinolophidae bats. The study included 503 (397 oral swabs and 106 fecal) samples collected from 20 bat species. Genetically diverse BtCoVs (n = 20) of the Alpha- and Betacoronavirus genera were found in fecal samples of two bat species. SARS-related CoVs were in 18 out of 58 lesser horseshoe bat (Rhinolophus hipposideros) samples (31%, 95% CI 20.6–43.8), and alphaCoVs were in 2 out of 55 Daubenton’s bat (Myotis daubentonii) samples (3.6%, 95% CI 0.6–12.3). The overall BtCoV prevalence was 4.0% (95% CI 2.6–6.1). High identity was determined for BtCoVs isolated from European M. daubentonii and R. hipposideros bats. The detection of SARS-related and alphaCoVs in Polish bats with high phylogenetic relatedness to reference BtCoVs isolated in different European countries but from the same species confirms their high host restriction. Our data elucidate the molecular epidemiology, prevalence, and geographic distribution of coronaviruses and particularly SARS-related types in the bat population.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland
- Correspondence: ; Tel.: +48-818-893-072; Fax: +48-818-862-595
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland
| | - Katarzyna Thor
- Department of Animal Genetics and Conservation, Institute of Animal Sciences, Warsaw University of Life Sciences—SGGW, 02-786 Warsaw, Poland
| | - Magda Niedbalska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland
| | - Dominika Pawelec
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland
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Orłowska A, Smreczak M, Potyrało P, Bomba A, Trębas P, Rola J. First Detection of Bat Astroviruses (BtAstVs) among Bats in Poland: The Genetic BtAstVs Diversity Reveals Multiple Co-Infection of Bats with Different Strains. Viruses 2021; 13:v13020158. [PMID: 33499328 PMCID: PMC7911471 DOI: 10.3390/v13020158] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 01/19/2021] [Accepted: 01/19/2021] [Indexed: 01/03/2023] Open
Abstract
Background: Astroviruses (AstVs) are common pathogens of a wide range of animal hosts, including mammals and avians, causing gastrointestinal diseases, mainly gastroenteritis and diarrhea. They prompt a significant health problem in newborns and young children and economic losses in the poultry sector and mink farms. Recent studies revealed a growing number of bat species carrying astroviruses with a noticeable prevalence and diversity. Here, we demonstrate the first detection of bat astroviruses (BtAstVs) circulating in the population of insectivorous bats in the territory of Poland. Results: Genetically diverse BtAstVs (n = 18) were found with a varying degree of bat species specificity in five out of 15 bat species in Poland previously recognized as BtAstV hosts. Astroviral RNA was found in 12 out of 98 (12.2%, 95% CI 7.1–20.2) bat intestines, six bat kidneys (6.1%, 95% CI 2.8–12.7) and two bat livers (2.0%, 95% CI 0.4–7.1). Deep sequencing of the astroviral RNA-dependent RNA polymerase (RdRp) region revealed co-infections in five single bat individuals with highly distinct astrovirus strains. Conclusions: The detection of highly distinct bat astroviruses in Polish bats favors virus recombination and the generation of novel divergent AstVs and creates a potential risk of virus transmission to domestic animals and humans in the country. These findings provide a new insight into molecular epidemiology, prevalence of astroviruses in European bat populations and the risk of interspecies transmission to other animals including humans.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Puławy, Poland; (P.P.); (P.T.); (J.R.)
- Correspondence: (A.O.); (M.S.); Tel.: +48-818893072 (A.O.); Fax: +48-818862595 (A.O. & M.S.)
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Puławy, Poland; (P.P.); (P.T.); (J.R.)
- Correspondence: (A.O.); (M.S.); Tel.: +48-818893072 (A.O.); Fax: +48-818862595 (A.O. & M.S.)
| | - Patrycja Potyrało
- Department of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Puławy, Poland; (P.P.); (P.T.); (J.R.)
| | - Arkadiusz Bomba
- Department of Omics Analyses, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Puławy, Poland;
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Puławy, Poland; (P.P.); (P.T.); (J.R.)
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, Al. Partyzantów 57, 24-100 Puławy, Poland; (P.P.); (P.T.); (J.R.)
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Flannery J, Frost L, Fay P, Hicks H, Henstock M, Smreczak M, Orłowska A, Rajko-Nenow P, Darpel K, Batten C. BTV-14 Infection in Sheep Elicits Viraemia with Mild Clinical Symptoms. Microorganisms 2020; 8:E892. [PMID: 32545731 PMCID: PMC7355590 DOI: 10.3390/microorganisms8060892] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 06/09/2020] [Accepted: 06/11/2020] [Indexed: 11/16/2022] Open
Abstract
In 2011, Bluetongue virus serotype 14 (BTV-14) was detected in Russia during routine surveillance, and was subsequently found in a number of European countries. The strain had high sequence similarity to a BTV-14 vaccine strain. We aimed to determine the risk of this BTV-14 strain causing disease in a UK sheep breed. Four Poll Dorset sheep were infected with a Polish isolate of BTV-14 and infection kinetics were monitored over 28 days. BTV RNA was detected in EDTA blood by 4 days post-infection (dpi) and remained detectable at 28 days post-infection (dpi). Peak viraemia occurred at 6 and 7 dpi with Ct values ranging between 24.6 and 27.3 in all infected animals. BTV antibodies were detected by 10 dpi using a commercial ELISA and neutralising antibodies were detected from 10 dpi. BTV was isolated between 6 and 12 dpi. All infected sheep developed mild clinical signs such as reddening of conjunctiva and mucosal membranes, with one sheep demonstrating more overt clinical signs. Two uninoculated control animals remained clinically healthy and did not have detectable BTV RNA or antibodies. The overall mild clinical symptoms caused by this BTV-14 in this highly susceptible sheep breed were in accordance with the asymptomatic infections observed in the affected countries.
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Affiliation(s)
- John Flannery
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Lorraine Frost
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Petra Fay
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Hayley Hicks
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Mark Henstock
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (M.S.); (A.O.)
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (M.S.); (A.O.)
| | - Paulina Rajko-Nenow
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Karin Darpel
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
| | - Carrie Batten
- Non-Vesicular Reference Laboratories, The Pirbright Institute, Ash Road, Pirbright, Woking, Surrey GU24 0NF, UK; (L.F.); (P.F.); (H.H.); (M.H.); (P.R.-N.); (K.D.); (C.B.)
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Cuéllar AC, Kjær LJ, Baum A, Stockmarr A, Skovgard H, Nielsen SA, Andersson MG, Lindström A, Chirico J, Lühken R, Steinke S, Kiel E, Gethmann J, Conraths FJ, Larska M, Smreczak M, Orłowska A, Hamnes I, Sviland S, Hopp P, Brugger K, Rubel F, Balenghien T, Garros C, Rakotoarivony I, Allène X, Lhoir J, Chavernac D, Delécolle JC, Mathieu B, Delécolle D, Setier-Rio ML, Scheid B, Chueca MÁM, Barceló C, Lucientes J, Estrada R, Mathis A, Venail R, Tack W, Bødker R. Modelling the monthly abundance of Culicoides biting midges in nine European countries using Random Forests machine learning. Parasit Vectors 2020; 13:194. [PMID: 32295627 PMCID: PMC7161244 DOI: 10.1186/s13071-020-04053-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 03/30/2020] [Indexed: 01/26/2023] Open
Abstract
BACKGROUND Culicoides biting midges transmit viruses resulting in disease in ruminants and equids such as bluetongue, Schmallenberg disease and African horse sickness. In the past decades, these diseases have led to important economic losses for farmers in Europe. Vector abundance is a key factor in determining the risk of vector-borne disease spread and it is, therefore, important to predict the abundance of Culicoides species involved in the transmission of these pathogens. The objectives of this study were to model and map the monthly abundances of Culicoides in Europe. METHODS We obtained entomological data from 904 farms in nine European countries (Spain, France, Germany, Switzerland, Austria, Poland, Denmark, Sweden and Norway) from 2007 to 2013. Using environmental and climatic predictors from satellite imagery and the machine learning technique Random Forests, we predicted the monthly average abundance at a 1 km2 resolution. We used independent test sets for validation and to assess model performance. RESULTS The predictive power of the resulting models varied according to month and the Culicoides species/ensembles predicted. Model performance was lower for winter months. Performance was higher for the Obsoletus ensemble, followed by the Pulicaris ensemble, while the model for Culicoides imicola showed a poor performance. Distribution and abundance patterns corresponded well with the known distributions in Europe. The Random Forests model approach was able to distinguish differences in abundance between countries but was not able to predict vector abundance at individual farm level. CONCLUSIONS The models and maps presented here represent an initial attempt to capture large scale geographical and temporal variations in Culicoides abundance. The models are a first step towards producing abundance inputs for R0 modelling of Culicoides-borne infections at a continental scale.
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Affiliation(s)
- Ana Carolina Cuéllar
- Division for Diagnostics and Scientific Advice, National Veterinary Institute, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Lene Jung Kjær
- Division for Diagnostics and Scientific Advice, National Veterinary Institute, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Andreas Baum
- Department of Applied Mathematics and Computer Science, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Anders Stockmarr
- Department of Applied Mathematics and Computer Science, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Henrik Skovgard
- Department of Agroecology - Entomology and Plant Pathology, Aarhus University, Aarhus, Denmark
| | - Søren Achim Nielsen
- Department of Science and Environment, Roskilde University, Roskilde, Denmark
| | | | | | - Jan Chirico
- National Veterinary Institute (SVA), Uppsala, Sweden
| | - Renke Lühken
- Faculty of Mathematics, Informatics and Natural Sciences, Universität Hamburg, Hamburg, Germany
- Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - Sonja Steinke
- Department of Biology and Environmental Sciences, Carl von Ossietzky University, Oldenburg, Germany
| | - Ellen Kiel
- Department of Biology and Environmental Sciences, Carl von Ossietzky University, Oldenburg, Germany
| | - Jörn Gethmann
- Institute of Epidemiology, Friedrich-Loeffler-Institut, Greifswald, Germany
| | - Franz J. Conraths
- Institute of Epidemiology, Friedrich-Loeffler-Institut, Greifswald, Germany
| | - Magdalena Larska
- Department of Virology, National Veterinary Research Institute, Pulawy, Poland
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Pulawy, Poland
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Pulawy, Poland
| | | | | | - Petter Hopp
- Norwegian Veterinary Institute, Oslo, Norway
| | - Katharina Brugger
- Unit of Veterinary Public Health and Epidemiology, University of Veterinary Medicine, Vienna, Austria
| | - Franz Rubel
- Unit of Veterinary Public Health and Epidemiology, University of Veterinary Medicine, Vienna, Austria
| | - Thomas Balenghien
- CIRAD, UMR ASTRE, 34398 Montpellier, France
- IAV Hassan II, Unité MIMC, 10 100 Rabat-Instituts, Morocco
| | - Claire Garros
- IAV Hassan II, Unité MIMC, 10 100 Rabat-Instituts, Morocco
| | | | - Xavier Allène
- IAV Hassan II, Unité MIMC, 10 100 Rabat-Instituts, Morocco
| | | | | | - Jean-Claude Delécolle
- Institute of Parasitology and Tropical Pathology of Strasbourg, UR7292, Université de Strasbourg, Strasbourg, France
| | - Bruno Mathieu
- Institute of Parasitology and Tropical Pathology of Strasbourg, UR7292, Université de Strasbourg, Strasbourg, France
| | - Delphine Delécolle
- Institute of Parasitology and Tropical Pathology of Strasbourg, UR7292, Université de Strasbourg, Strasbourg, France
| | | | | | | | - Carlos Barceló
- Applied Zoology and Animal Conservation Research Group, University of the Balearic Islands, Palma, Spain
| | - Javier Lucientes
- Department of Animal Pathology, University of Zaragoza, Zaragoza, Spain
| | - Rosa Estrada
- Department of Animal Pathology, University of Zaragoza, Zaragoza, Spain
| | - Alexander Mathis
- Institute of Parasitology, National Centre for Vector Entomology, Vetsuisse FacultyInstitute of Parasitology, National Centre for Vector Entomology, Vetsuisse Faculty, University of Zürich, Zürich, Switzerland
| | | | | | - Rene Bødker
- Division for Diagnostics and Scientific Advice, National Veterinary Institute, Technical University of Denmark (DTU), Lyngby, Denmark
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9
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Abstract
The 2 predominant circulating subtypes of influenza A virus in the dog population, equine-origin H3N8 and avian-origin H3N2, constitute a potential zoonotic risk. We determined the prevalence of influenza A antibodies in 496 dogs in Poland and found 2.21% of sera positive by commercial ELISA. Hemagglutination inhibition (HI) assays indicated 7.25% of sera positive using equine H3N8, swine H3N2, and pandemic H1N1 antigens, with the most frequently detected immune response being to H3N2. Considering interspecies transfer, reassortment ability, and close contact between dogs and humans, infections of dogs with influenza A virus should be monitored.
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Affiliation(s)
- Malgorzata Kwasnik
- Departments of Virology (Kwasnik, Smreczak, Rola, Rozek), National Veterinary Research Institute, Pulawy, Poland.,Swine Diseases (Urbaniak), National Veterinary Research Institute, Pulawy, Poland
| | - Marcin Smreczak
- Departments of Virology (Kwasnik, Smreczak, Rola, Rozek), National Veterinary Research Institute, Pulawy, Poland.,Swine Diseases (Urbaniak), National Veterinary Research Institute, Pulawy, Poland
| | - Jerzy Rola
- Departments of Virology (Kwasnik, Smreczak, Rola, Rozek), National Veterinary Research Institute, Pulawy, Poland.,Swine Diseases (Urbaniak), National Veterinary Research Institute, Pulawy, Poland
| | - Kinga Urbaniak
- Departments of Virology (Kwasnik, Smreczak, Rola, Rozek), National Veterinary Research Institute, Pulawy, Poland.,Swine Diseases (Urbaniak), National Veterinary Research Institute, Pulawy, Poland
| | - Wojciech Rozek
- Departments of Virology (Kwasnik, Smreczak, Rola, Rozek), National Veterinary Research Institute, Pulawy, Poland.,Swine Diseases (Urbaniak), National Veterinary Research Institute, Pulawy, Poland
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10
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Orłowska A, Smreczak M, Freuling CM, Müller T, Trębas P, Rola J. Serological Survey of Lyssaviruses in Polish Bats in the Frame of Passive Rabies Surveillance Using an Enzyme-Linked Immunosorbent Assay. Viruses 2020; 12:v12030271. [PMID: 32121200 PMCID: PMC7150987 DOI: 10.3390/v12030271] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 02/17/2020] [Accepted: 02/27/2020] [Indexed: 12/27/2022] Open
Abstract
Background: Bats are known to host a number of nonpathogenic viruses, as well as highly pathogenic viruses causing fatal diseases like rabies. Serological surveys as part of active and passive bat rabies surveillance mainly use seroneutralization assays, demonstrating the presence of lyssavirus-specific antibodies in a variety of European bats, particularly against European bat lyssaviruses type 1 (EBLV-1). Here, we present the first serological survey in European bats of this kind during which European bats from Poland collected in the frame of passive rabies surveillance between 2012 and 2018, as well as Serotine bats (Eptesicus serotinus) and North American Big Brown bats (Eptesicus fuscus) from previous experimental studies, were tested using a commercial ELISA kit for the detection of anti-lyssavirus antibodies. Results: Lyssavirus-specific antibodies were detected in 35 (30.4%) out of 115 Polish bats of both sexes, representing nine out of 13 identified bat species endemic mainly to Central Southern Europe and Western Asia, i.e., Eptesicus serotinus, Nyctalus noctula, Myotis daubentonii, Plecotus auritus, Vespertillo murinus, Pipistrellus pipistrellus, Pipistrellus pipilstrellus/Pipistrellus pygmaeus, Myotis brandtii, and Barbastella barbastellus. Seroprevalence was highest in bat species of Nyctalus noctula, Eptesicus serotinus, Plecotus auritus, and Myotis daubentonii. More than 60% of the ELISA seropositive bats originated from the voivodeships of Silesia, Lower-Silesian, Warmian-Mazurian, and Mazowian. Rabies-specific antibodies were also found in Eptesicus fuscus bats from North America. Conclusions: The study demonstrates the principal application of the BioPro Rabies ELISA Ab Kit for the detection of anti-lyssavirus specific antibodies in body fluids and serum samples of bats. However, results may only be reliable for North American bats, whereas interpretation of results for European bats per se is difficult because proper validation of the test is hampered by the protected status of these species.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
- Correspondence: (A.O.); (M.S.); Tel.: +48-818-893-072 (A.O.); +48818-893-029 (M.S.)
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
- Correspondence: (A.O.); (M.S.); Tel.: +48-818-893-072 (A.O.); +48818-893-029 (M.S.)
| | - Conrad Martin Freuling
- Institute of Molecular Virology and Cell Biology, FLI, WHO Collaborating Centre for Rabies Surveillance and Research, OIE Reference Laboratory for Rabies, 17493 Greifswald-Insel Riems, Germany; (C.M.F.); (T.M.)
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, FLI, WHO Collaborating Centre for Rabies Surveillance and Research, OIE Reference Laboratory for Rabies, 17493 Greifswald-Insel Riems, Germany; (C.M.F.); (T.M.)
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (P.T.); (J.R.)
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11
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Calvelage S, Smreczak M, Orłowska A, Freuling CM, Müller T, Fehlner-Gardiner C, Nadin-Davis S, Höper D, Trębas P. Population- and Variant-Based Genome Analyses of Viruses from Vaccine-Derived Rabies Cases Demonstrate Product Specific Clusters and Unique Patterns. Viruses 2020; 12:v12010115. [PMID: 31963517 PMCID: PMC7020022 DOI: 10.3390/v12010115] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 01/10/2020] [Accepted: 01/13/2020] [Indexed: 12/24/2022] Open
Abstract
Rabies in wildlife has been successfully controlled in parts of Europe and North America using oral rabies vaccination, i.e., the distribution of baits containing live-attenuated virus strains. Occasionally, these vaccines caused vaccine virus-induced rabies cases. To elucidate the mechanisms of genetic selection and the effect of viral populations on these rabies cases, a next generation sequencing approach as well as comprehensive data analyses of the genetic diversity of Street Alabama Dufferin (SAD) and ERA vaccine virus strains and vaccine-induced rabies cases from Canada and several European countries were conducted. As a result, twelve newly generated sets of sequencing data from Canada and Poland were added to a pool of previously investigated samples. While the population-based analysis showed a segregation of viruses of ERA vaccine-induced rabies cases from those of SAD Bern original (SAD Bernorig)-derived rabies cases, the in-depth variant analysis revealed three distinct combinations of selected variants for the ERA vaccine-induced cases, suggesting the presence of multiple replication-competent haplotypes in the investigated ERA-BHK21 vaccine. Our findings demonstrate the potential of a deep sequencing approach in combination with comprehensive analyses on the consensus, population, and variant level.
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Affiliation(s)
- Sten Calvelage
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, 17493 Greifswald-Insel Riems, Germany; (S.C.); (D.H.)
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (M.S.); (A.O.); (P.T.)
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (M.S.); (A.O.); (P.T.)
| | - Conrad Martin Freuling
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, WHO Collaborating Centre for Rabies Surveillance and Research, OIE Reference Laboratory for Rabies, 17493 Greifswald-Insel Riems, Germany;
- Correspondence:
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, WHO Collaborating Centre for Rabies Surveillance and Research, OIE Reference Laboratory for Rabies, 17493 Greifswald-Insel Riems, Germany;
| | - Christine Fehlner-Gardiner
- National Reference Centre for Rabies, Ottawa Laboratory–Fallowfield, Canadian Food Inspection Agency, Ottawa, ON K2H 8P91, Canada; (C.F.-G.); (S.N.-D.)
| | - Susan Nadin-Davis
- National Reference Centre for Rabies, Ottawa Laboratory–Fallowfield, Canadian Food Inspection Agency, Ottawa, ON K2H 8P91, Canada; (C.F.-G.); (S.N.-D.)
| | - Dirk Höper
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, 17493 Greifswald-Insel Riems, Germany; (S.C.); (D.H.)
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, 24-100 Puławy, Poland; (M.S.); (A.O.); (P.T.)
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12
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Orłowska A, Iwan E, Smreczak M, Rola J. Evaluation of Direct Metagenomics and Target Enriched Approaches for High-throughput Sequencing of Field Rabies Viruses. J Vet Res 2019; 63:471-479. [PMID: 31934655 PMCID: PMC6950431 DOI: 10.2478/jvetres-2019-0067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Accepted: 11/04/2019] [Indexed: 11/29/2022] Open
Abstract
INTRODUCTION High-throughput sequencing (HTS) identifies random viral fragments in environmental samples metagenomically. High reliability gains it broad application in virus evolution, host-virus interaction, and pathogenicity studies. Deep sequencing of field samples with content of host genetic material and bacteria often produces insufficient data for metagenomics and must be preceded by target enrichment. The main goal of the study was the evaluation of HTS for complete genome sequencing of field-case rabies viruses (RABVs). MATERIAL AND METHODS The material was 23 RABVs isolated mainly from red foxes and one European bat lyssavirus-1 isolate propagated in neuroblastoma cells. Three methods of RNA isolation were tested for the direct metagenomics and RABV-enriched approaches. Deep sequencing was performed with a MiSeq sequencer (Illumina) and reagent v3 kit. Bioinformatics data were evaluated by Kraken and Centrifuge software and de novo assembly was done with metaSPAdes. RESULTS Testing RNA extraction procedures revealed the deep sequencing scope superiority of the combined TRIzol/column method. This HTS methodology made it possible to obtain complete genomes of all the RABV isolates collected in the field. Significantly greater rates of RABV genome coverages (over 5,900) were obtained with RABV enrichment. Direct metagenomic studies sequenced the full length of 6 out of 16 RABV isolates with a medium coverage between 1 and 71. CONCLUSION Direct metagenomics gives the most realistic illustration of the field sample microbiome, but with low coverage. For deep characterisation of viruses, e.g. for spatial and temporal phylogeography during outbreaks, target enrichment is recommended as it covers sequences much more completely.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100Puławy, Poland
| | - Ewelina Iwan
- Department of Virology, National Veterinary Research Institute, 24-100Puławy, Poland
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100Puławy, Poland
| | - Jerzy Rola
- Department of Virology, National Veterinary Research Institute, 24-100Puławy, Poland
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13
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Martina BEE, Smreczak M, Orlowska A, Marzec A, Trebas P, Roose JM, Zmudzinski J, Gerhauser I, Wohlsein P, Baumgärtner W, Osterhaus ADME, Koraka P. Combination drug treatment prolongs survival of experimentally infected mice with silver-haired bat rabies virus. Vaccine 2019; 37:4736-4742. [PMID: 29843998 DOI: 10.1016/j.vaccine.2018.05.065] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Revised: 04/24/2018] [Accepted: 05/12/2018] [Indexed: 01/06/2023]
Abstract
Rabies is a lethal disease in humans and animals, killing approximately 60,000 people every year. Currently, there is no treatment available, except post-exposure prophylaxis (PEP) that can be administered whenever exposure to a rabid animal took place. Here we describe the beneficial effects of a combination treatment initiated at day 4 post infection, containing anti-viral drugs and immune modulators in infected mice. Combination therapy resulted in significant increase in survival time (P < 0.05) and significantly lowers viral RNA in the brain and spinal cord (P < 0.05). Furthermore, treatment influenced markers of pyroptosis and apoptosis and early inflammatory response as measured by the levels of TNF-α. Morphological lesions were absent in rabies virus infected mice with few signs of inflammation. However, these were not significant between the different groups.
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Affiliation(s)
- Byron E E Martina
- Artemis One Health Research Foundation, Delft, The Netherlands; Erasmus Medical Centre Rotterdam, The Netherlands
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland
| | - Anna Orlowska
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland
| | - Anna Marzec
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland
| | - Pawel Trebas
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland
| | - Jouke M Roose
- Artemis One Health Research Foundation, Delft, The Netherlands
| | - Jan Zmudzinski
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100 Puławy, Poland
| | - Ingo Gerhauser
- Department of Pathology, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Peter Wohlsein
- Department of Pathology, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Wolfgang Baumgärtner
- Department of Pathology, University of Veterinary Medicine Hannover, Hannover, Germany; Center for Systems Neuroscience (ZSN), Hannover, Germany
| | - Albert D M E Osterhaus
- Artemis One Health Research Foundation, Delft, The Netherlands; Research Center for Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine, Hannover, Germany
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14
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Koraka P, Martina BE, Smreczak M, Orlowska A, Marzec A, Trebas P, Roose JM, Begeman L, Gerhauser I, Wohlsein P, Baumgärtner W, Zmudzinski J, D.M.E. Osterhaus A. Inhibition of caspase-1 prolongs survival of mice infected with rabies virus. Vaccine 2019; 37:4681-4685. [DOI: 10.1016/j.vaccine.2018.04.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Revised: 03/01/2018] [Accepted: 04/02/2018] [Indexed: 11/29/2022]
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15
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Smreczak M, Orłowska A, Marzec A, Trębas P, Kycko A, Reichert M, Koraka P, Osterhaus AD, Żmudziński JF. The effect of combined drugs therapy on the course of clinical rabies infection in a murine model. Vaccine 2019; 37:4701-4709. [DOI: 10.1016/j.vaccine.2018.04.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Revised: 03/20/2018] [Accepted: 04/02/2018] [Indexed: 10/17/2022]
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16
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Cuéllar AC, Jung Kjær L, Baum A, Stockmarr A, Skovgard H, Nielsen SA, Andersson MG, Lindström A, Chirico J, Lühken R, Steinke S, Kiel E, Gethmann J, Conraths FJ, Larska M, Smreczak M, Orłowska A, Hamnes I, Sviland S, Hopp P, Brugger K, Rubel F, Balenghien T, Garros C, Rakotoarivony I, Allène X, Lhoir J, Chavernac D, Delécolle JC, Mathieu B, Delécolle D, Setier-Rio ML, Venail R, Scheid B, Chueca MÁM, Barceló C, Lucientes J, Estrada R, Mathis A, Tack W, Bødker R. Monthly variation in the probability of presence of adult Culicoides populations in nine European countries and the implications for targeted surveillance. Parasit Vectors 2018; 11:608. [PMID: 30497537 PMCID: PMC6267925 DOI: 10.1186/s13071-018-3182-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Accepted: 11/05/2018] [Indexed: 01/30/2023] Open
Abstract
BACKGROUND Biting midges of the genus Culicoides (Diptera: Ceratopogonidae) are small hematophagous insects responsible for the transmission of bluetongue virus, Schmallenberg virus and African horse sickness virus to wild and domestic ruminants and equids. Outbreaks of these viruses have caused economic damage within the European Union. The spatio-temporal distribution of biting midges is a key factor in identifying areas with the potential for disease spread. The aim of this study was to identify and map areas of neglectable adult activity for each month in an average year. Average monthly risk maps can be used as a tool when allocating resources for surveillance and control programs within Europe. METHODS We modelled the occurrence of C. imicola and the Obsoletus and Pulicaris ensembles using existing entomological surveillance data from Spain, France, Germany, Switzerland, Austria, Denmark, Sweden, Norway and Poland. The monthly probability of each vector species and ensembles being present in Europe based on climatic and environmental input variables was estimated with the machine learning technique Random Forest. Subsequently, the monthly probability was classified into three classes: Absence, Presence and Uncertain status. These three classes are useful for mapping areas of no risk, areas of high-risk targeted for animal movement restrictions, and areas with an uncertain status that need active entomological surveillance to determine whether or not vectors are present. RESULTS The distribution of Culicoides species ensembles were in agreement with their previously reported distribution in Europe. The Random Forest models were very accurate in predicting the probability of presence for C. imicola (mean AUC = 0.95), less accurate for the Obsoletus ensemble (mean AUC = 0.84), while the lowest accuracy was found for the Pulicaris ensemble (mean AUC = 0.71). The most important environmental variables in the models were related to temperature and precipitation for all three groups. CONCLUSIONS The duration periods with low or null adult activity can be derived from the associated monthly distribution maps, and it was also possible to identify and map areas with uncertain predictions. In the absence of ongoing vector surveillance, these maps can be used by veterinary authorities to classify areas as likely vector-free or as likely risk areas from southern Spain to northern Sweden with acceptable precision. The maps can also focus costly entomological surveillance to seasons and areas where the predictions and vector-free status remain uncertain.
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Affiliation(s)
- Ana Carolina Cuéllar
- Division for Diagnostics and Scientific Advice, National Veterinary Institute, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Lene Jung Kjær
- Division for Diagnostics and Scientific Advice, National Veterinary Institute, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Andreas Baum
- Department of Applied Mathematics and Computer Science, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Anders Stockmarr
- Department of Applied Mathematics and Computer Science, Technical University of Denmark (DTU), Lyngby, Denmark
| | - Henrik Skovgard
- Department of Agroecology - Entomology and Plant Pathology, Aarhus University, Aarhus, Denmark
| | - Søren Achim Nielsen
- Department of Science and Environment, Roskilde University, Roskilde, Denmark
| | | | | | - Jan Chirico
- National Veterinary Institute (SVA), Uppsala, Sweden
| | - Renke Lühken
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research National Reference Centre for Tropical Infectious Diseases, Hamburg, Germany
| | - Sonja Steinke
- Department of Biology and Environmental Sciences, Carl von Ossietzky University, Oldenburg, Germany
| | - Ellen Kiel
- Department of Biology and Environmental Sciences, Carl von Ossietzky University, Oldenburg, Germany
| | - Jörn Gethmann
- Institute of Epidemiology, Friedrich Loeffler Institute, Greifswald, Germany
| | - Franz J. Conraths
- Institute of Epidemiology, Friedrich Loeffler Institute, Greifswald, Germany
| | - Magdalena Larska
- Department of Virology, National Veterinary Research Institute, Pulawy, Poland
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Pulawy, Poland
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Pulawy, Poland
| | | | | | - Petter Hopp
- Norwegian Veterinary Institute, Oslo, Norway
| | | | - Franz Rubel
- Institute for Veterinary Public Health, Vetmeduni, Vienna, Austria
| | | | | | | | | | | | | | - Jean-Claude Delécolle
- Institute of Parasitology and Tropical Pathology of Strasbourg, EA7292, Université de Strasbourg, Strasbourg, France
| | - Bruno Mathieu
- Institute of Parasitology and Tropical Pathology of Strasbourg, EA7292, Université de Strasbourg, Strasbourg, France
| | - Delphine Delécolle
- Institute of Parasitology and Tropical Pathology of Strasbourg, EA7292, Université de Strasbourg, Strasbourg, France
| | | | - Roger Venail
- EID Méditerranée, Montpellier, France
- Avia-GIS NV, Zoersel, Belgium
| | | | | | - Carlos Barceló
- Laboratory of Zoology, University of the Balearic Islands, Palma, Spain
| | - Javier Lucientes
- Department of Animal Pathology, University of Zaragoza, Zaragoza, Spain
| | - Rosa Estrada
- Department of Animal Pathology, University of Zaragoza, Zaragoza, Spain
| | - Alexander Mathis
- Institute of Parasitology, University of Zürich, Zürich, Switzerland
| | | | - René Bødker
- Division for Diagnostics and Scientific Advice, National Veterinary Institute, Technical University of Denmark (DTU), Lyngby, Denmark
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17
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Román LS, Menon BK, Blasco J, Hernández-Pérez M, Dávalos A, Majoie CBLM, Campbell BCV, Guillemin F, Lingsma H, Anxionnat R, Epstein J, Saver JL, Marquering H, Wong JH, Lopes D, Reimann G, Desal H, Dippel DWJ, Coutts S, du Mesnil de Rochemont R, Yavagal D, Ferre JC, Roos YBWEM, Liebeskind DS, Lenthall R, Molina C, Al Ajlan FS, Reddy V, Dowlatshahi D, Sourour NA, Oppenheim C, Mitha AP, Davis SM, Weimar C, van Oostenbrugge RJ, Cobo E, Kleinig TJ, Donnan GA, van der Lugt A, Demchuk AM, Berkhemer OA, Boers AMM, Ford GA, Muir KW, Brown BS, Jovin T, van Zwam WH, Mitchell PJ, Hill MD, White P, Bracard S, Goyal M, Berkhemer OA, Fransen PSS, Beumer D, van den Berg LA, Lingsma HF, Yoo AJ, Schonewille WJ, Vos JA, Nederkoorn PJ, Wermer MJH, van Walderveen MAA, Staals J, Hofmeijer J, van Oostayen JA, Lycklama à Nijeholt GJ, Boiten J, Brouwer PA, Emmer BJ, de Bruijn SF, van Dijk LC, Kappelle J, Lo RH, van Dijk EJ, de Vries J, de Kort PL, van Rooij WJJ, van den Berg JS, van Hasselt BA, Aerden LA, Dallinga RJ, Visser MC, Bot JC, Vroomen PC, Eshghi O, Schreuder TH, Heijboer RJ, Keizer K, Tielbeek AV, den Hertog HM, Gerrits DG, van den Berg-Vos RM, Karas GB, Steyerberg EW, Flach Z, Marquering HA, Sprengers ME, Jenniskens SF, Beenen LF, Zech M, Kowarik M, Seifert C, Schwaiger B, Puri A, Hou S, Wakhloo A, Moonis M, Henniger N, Goddeau R, van den Berg R, Massari F, Minaeian A, Lozano JD, Ramzan M, Stout C, Patel A, Tunguturi A, Onteddu S, Carandang R, Howk M, Koudstaal PJ, Ribó M, Sanjuan E, Rubiera M, Pagola J, Flores A, Muchada M, Meler P, Huerga E, Gelabert S, Coscojuela P, van Zwam WH, Tomasello A, Rodriguez D, Santamarina E, Maisterra O, Boned S, Seró L, Rovira A, Molina CA, Millán M, Muñoz L, Roos YB, Pérez de la Ossa N, Gomis M, Dorado L, López-Cancio E, Palomeras E, Munuera J, García Bermejo P, Remollo S, Castaño C, García-Sort R, van der Lugt A, Cuadras P, Puyalto P, Hernández-Pérez M, Jiménez M, Martínez-Piñeiro A, Lucente G, Dávalos A, Chamorro A, Urra X, Obach V, van 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Imaging features and safety and efficacy of endovascular stroke treatment: a meta-analysis of individual patient-level data. Lancet Neurol 2018; 17:895-904. [DOI: 10.1016/s1474-4422(18)30242-4] [Citation(s) in RCA: 213] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 06/11/2018] [Accepted: 06/12/2018] [Indexed: 11/29/2022]
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Smreczak M, Orłowska A, Marzec A, Trębas P, Müller T, Freuling CM, Żmudziński JF. Bokeloh bat lyssavirus isolation in a Natterer's bat, Poland. Zoonoses Public Health 2018; 65:1015-1019. [PMID: 30198169 DOI: 10.1111/zph.12519] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Revised: 06/28/2018] [Accepted: 08/07/2018] [Indexed: 11/27/2022]
Abstract
In recent years, Bokeloh bat lyssavirus (BBLV), a member of the novel lyssavirus genus Bokeloh bat lyssavirus in the family Rhabdoviridae, has been detected in Germany (five cases) and France (two cases). Here, we report the isolation of BBLV in a Natterer's bat (Myotis nattereri) in Poland. The bat brain tested positive for rabies using classical diagnostics tests (FAT and RTCIT) and then subsequently confirmed by molecular techniques. Viral RNA was found in all peripheral organs tested, and the highest viral loads were detected in brain, the salivary gland and bladder. Phylogenetic analysis performed on complete viral genome sequences revealed the closest homology to representatives of BBLV lineage B, isolated previously in southern Germany. This case provides further evidence that BBLV is widespread in Europe.
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Affiliation(s)
- Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Anna Marzec
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, WHO Collaborating Centre for Rabies Surveillance and Research, Friedrich - Loeffler Institut, Greiifswald-Insel Riems, Germany
| | - Conrad M Freuling
- Institute of Molecular Virology and Cell Biology, WHO Collaborating Centre for Rabies Surveillance and Research, Friedrich - Loeffler Institut, Greiifswald-Insel Riems, Germany
| | - Jan F Żmudziński
- Department of Virology, National Veterinary Research Institute, Puławy, Poland
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K, Tielbeek AV, den Hertog HM, Gerrits DG, van den Berg-Vos RM, Karas GB, Steyerberg EW, Flach Z, Marquering HA, Sprengers ME, Jenniskens SF, Beenen LF, van den Berg R, Koudstaal PJ, van Zwam WH, Roos YB, van der Lugt A, van Oostenbrugge RJ, Wakhloo A, Moonis M, Henninger N, Goddeau R, Massari F, Minaeian A, Lozano JD, Ramzan M, Stout C, Patel A, Majoie CB, Tunguturi A, Onteddu S, Carandang R, Howk M, Ribó M, Sanjuan E, Rubiera M, Pagola J, Flores A, Muchada M, Dippel DW, Meler P, Huerga E, Gelabert S, Coscojuela P, Tomasello A, Rodriguez D, Santamarina E, Maisterra O, Boned S, Seró L, Brown MM, Rovira A, Molina CA, Millán M, Muñoz L, Pérez de la Ossa N, Gomis M, Dorado L, López-Cancio E, Palomeras E, Munuera J, Liebig T, García Bermejo P, Remollo S, Castaño C, García-Sort R, Cuadras P, Puyalto P, Hernández-Pérez M, Jiménez M, Martínez-Piñeiro A, Lucente G, Stijnen T, Dávalos A, Chamorro A, Urra X, Obach V, Cervera A, Amaro S, Llull L, Codas J, Balasa M, Navarro J, Andersson T, Ariño H, Aceituno A, Rudilosso S, Renu A, Macho JM, San Roman L, Blasco J, López A, Macías N, Cardona P, Mattle H, Quesada H, Rubio F, Cano L, Lara B, de Miquel MA, Aja L, Serena J, Cobo E, Albers GW, Lees KR, Wahlgren N, Arenillas J, Roberts R, Minhas P, Al-Ajlan F, Salluzzi M, Zimmel L, Patel S, Eesa M, Martí-Fàbregas J, Jankowitz B, van der Heijden E, Serena J, Salvat-Plana M, López-Cancio E, Bracard S, Ducrocq X, Anxionnat R, Baillot PA, Barbier C, Derelle AL, Lacour JC, Ghannouti N, Richard S, Samson Y, Sourour N, Baronnet-Chauvet F, Clarencon F, Crozier S, Deltour S, Di Maria F, Le Bouc R, Leger A, Fleitour N, Mutlu G, Rosso C, Szatmary Z, Yger M, Zavanone C, Bakchine S, Pierot L, Caucheteux N, Estrade L, Kadziolka K, Hooijenga I, Leautaud A, Renkes C, Serre I, Desal H, Guillon B, Boutoleau-Bretonniere C, Daumas-Duport B, De Gaalon S, Derkinderen P, Evain S, Puppels C, Herisson F, Laplaud DA, Lebouvier T, Lintia-Gaultier A, Pouclet-Courtemanche H, Rouaud T, Rouaud Jaffrenou V, Schunck 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Cunningham J, Santos E, Borst J, Jansen I, Kappelhof M, Lucas M, Geuskens R, Barros RS, Dobbe R, Csizmadia M, Hill MD, Goyal M, Demchuk AM, Menon BK, Eesa M, Ryckborst KJ, Wright MR, Kamal NR, Andersen L, Randhawa PA, Stewart T, Patil S, Minhas P, Almekhlafi M, Mishra S, Clement F, Sajobi T, Shuaib A, Montanera WJ, Roy D, Silver FL, Jovin TG, Frei DF, Sapkota B, Rempel JL, Thornton J, Williams D, Tampieri D, Poppe AY, Dowlatshahi D, Wong JH, Mitha AP, Subramaniam S, Hull G, Lowerison MW, Sajobi T, Salluzzi M, Wright MR, Maxwell M, Lacusta S, Drupals E, Armitage K, Barber PA, Smith EE, Morrish WF, Coutts SB, Derdeyn C, Demaerschalk B, Yavagal D, Martin R, Brant R, Yu Y, Willinsky RA, Montanera WJ, Weill A, Kenney C, Aram H, Stewart T, Stys PK, Watson TW, Klein G, Pearson D, Couillard P, Trivedi A, Singh D, Klourfeld E, Imoukhuede O, Nikneshan D, Blayney S, Reddy R, Choi P, Horton M, Musuka T, Dubuc V, Field TS, Desai J, Adatia S, Alseraya A, Nambiar V, van Dijk R, Wong JH, Mitha AP, Morrish WF, Eesa M, Newcommon NJ, Shuaib A, Schwindt B, Butcher KS, Jeerakathil T, Buck B, Khan K, Naik SS, Emery DJ, Owen RJ, Kotylak TB, Ashforth RA, Yeo TA, McNally D, Siddiqui M, Saqqur M, Hussain D, Kalashyan H, Manosalva A, Kate M, Gioia L, Hasan S, Mohammad A, Muratoglu M, Williams D, Thornton J, Cullen A, Brennan P, O'Hare A, Looby S, Hyland D, Duff S, McCusker M, Hallinan B, Lee S, McCormack J, Moore A, O'Connor M, Donegan C, Brewer L, Martin A, Murphy S, O'Rourke K, Smyth S, Kelly P, Lynch T, Daly T, O'Brien P, O'Driscoll A, Martin M, Daly T, Collins R, Coughlan T, McCabe D, Murphy S, O'Neill D, Mulroy M, Lynch O, Walsh T, O'Donnell M, Galvin T, Harbison J, McElwaine P, Mulpeter K, McLoughlin C, Reardon M, Harkin E, Dolan E, Watts M, Cunningham N, Fallon C, Gallagher S, Cotter P, Crowe M, Doyle R, Noone I, Lapierre M, Coté VA, Lanthier S, Odier C, Durocher A, Raymond J, Weill A, Daneault N, Deschaintre Y, Jankowitz B, Baxendell L, Massaro L, Jackson-Graves C, Decesare S, Porter P, Armbruster K, Adams A, Billigan J, Oakley J, Ducruet A, Jadhav A, Giurgiutiu DV, Aghaebrahim A, Reddy V, Hammer M, Starr M, Totoraitis V, Wechsler L, Streib S, Rangaraju S, Campbell D, Rocha M, Gulati D, Silver FL, Krings T, Kalman L, Cayley A, Williams J, Stewart T, Wiegner R, Casaubon LK, Jaigobin C, del Campo JM, Elamin E, Schaafsma JD, Willinsky RA, Agid R, Farb R, ter Brugge K, Sapkoda BL, Baxter BW, Barton K, Knox A, Porter A, Sirelkhatim A, Devlin T, Dellinger C, Pitiyanuvath N, Patterson J, Nichols J, Quarfordt S, Calvert J, Hawk H, Fanale C, Frei DF, Bitner A, Novak A, Huddle D, Bellon R, Loy D, Wagner J, Chang I, Lampe E, Spencer B, Pratt R, Bartt R, Shine S, Dooley G, Nguyen T, Whaley M, McCarthy K, Teitelbaum J, Tampieri D, Poon W, Campbell N, Cortes M, Dowlatshahi D, Lum C, Shamloul R, Robert S, Stotts G, Shamy M, Steffenhagen N, Blacquiere D, Hogan M, AlHazzaa M, Basir G, Lesiuk H, Iancu D, Santos M, Choe H, Weisman DC, Jonczak K, Blue-Schaller A, Shah Q, MacKenzie L, Klein B, Kulandaivel K, Kozak O, Gzesh DJ, Harris LJ, Khoury JS, Mandzia J, Pelz D, Crann S, Fleming L, Hesser K, Beauchamp B, Amato-Marzialli B, Boulton M, Lopez- Ojeda P, Sharma M, Lownie S, Chan R, Swartz R, Howard P, Golob D, Gladstone D, Boyle K, Boulos M, Hopyan J, Yang V, Da Costa L, Holmstedt CA, Turk AS, Navarro R, Jauch E, Ozark S, Turner R, Phillips S, Shankar J, Jarrett J, Gubitz G, Maloney W, Vandorpe R, Schmidt M, Heidenreich J, Hunter G, Kelly M, Whelan R, Peeling L, Burns PA, Hunter A, Wiggam I, Kerr E, Watt M, Fulton A, Gordon P, Rennie I, Flynn P, Smyth G, O'Leary S, Gentile N, Linares G, McNelis P, Erkmen K, Katz P, Azizi A, Weaver M, Jungreis C, Faro S, Shah P, Reimer H, Kalugdan V, Saposnik G, Bharatha A, Li Y, Kostyrko P, Santos M, Marotta T, Montanera W, Sarma D, Selchen D, Spears J, Heo JH, Jeong K, Kim DJ, Kim BM, Kim YD, Song D, Lee KJ, Yoo J, Bang OY, Rho S, Lee J, Jeon P, Kim KH, Cha J, Kim SJ, Ryoo S, Lee MJ, Sohn SI, Kim CH, Ryu HG, Hong JH, Chang HW, Lee CY, Rha J, Davis SM, Donnan GA, Campbell BCV, Mitchell PJ, Churilov L, Yan B, Dowling R, Yassi N, Oxley TJ, Wu TY, Silver G, McDonald A, McCoy R, Kleinig TJ, Scroop R, Dewey HM, Simpson M, Brooks M, Coulton B, Krause M, Harrington TJ, Steinfort B, Faulder K, Priglinger M, Day S, Phan T, Chong W, Holt M, Chandra RV, Ma H, Young D, Wong K, Wijeratne T, Tu H, Mackay E, Celestino S, Bladin CF, Loh PS, Gilligan A, Ross Z, Coote S, Frost T, Parsons MW, Miteff F, Levi CR, Ang T, Spratt N, Kaauwai L, Badve M, Rice H, de Villiers L, Barber PA, McGuinness B, Hope A, Moriarty M, Bennett P, Wong A, Coulthard A, Lee A, Jannes J, Field D, Sharma G, Salinas S, Cowley E, Snow B, Kolbe J, Stark R, King J, Macdonnell R, Attia J, D'Este C, Saver JL, Goyal M, Diener HC, Levy EI, Bonafé A, Mendes Pereira V, Jahan R, Albers GW, Cognard C, Cohen DJ, Hacke W, Jansen O, Jovin TG, Mattle HP, Nogueira RG, Siddiqui AH, Yavagal DR, von Kummer R, Smith W, Turjman F, Hamilton S, Chiacchierini R, Amar A, Sanossian N, Loh Y, Devlin T, Baxter B, Hawk H, Sapkota B, Quarfordt S, Sirelkhatim A, Dellinger C, Barton K, Reddy VK, Ducruet A, Jadhav A, Horev A, Giurgiutiu DV, Totoraitis V, Hammer M, Jankowitz B, Wechsler L, Rocha M, Gulati D, Campbell D, Star M, Baxendell L, Oakley J, Siddiqui A, Hopkins LN, Snyder K, Sawyer R, Hall S, Costalat V, Riquelme C, Machi P, Omer E, Arquizan C, Mourand I, Charif M, Ayrignac X, Menjot de Champfleur N, Leboucq N, Gascou G, Moynier M, du Mesnil de Rochemont R, Singer O, Berkefeld J, Foerch C, Lorenz M, Pfeilschifer W, Hattingen E, Wagner M, You SJ, Lescher S, Braun H, Dehkharghani S, Belagaje SR, Anderson A, Lima A, Obideen M, Haussen D, Dharia R, Frankel M, Patel V, Owada K, Saad A, Amerson L, Horn C, Doppelheuer S, Schindler K, Lopes DK, Chen M, Moftakhar R, Anton C, Smreczak M, Carpenter JS, Boo S, Rai A, Roberts T, Tarabishy A, Gutmann L, Brooks C, Brick J, Domico J, Reimann G, Hinrichs K, Becker M, Heiss E, Selle C, Witteler A, Al-Boutros S, Danch MJ, Ranft A, Rohde S, Burg K, Weimar C, Zegarac V, Hartmann C, Schlamann M, Göricke S, Ringlestein A, Wanke I, Mönninghoff C, Dietzold M, Budzik R, Davis T, Eubank G, Hicks WJ, Pema P, Vora N, Mejilla J, Taylor M, Clark W, Rontal A, Fields J, Peterson B, Nesbit G, Lutsep H, Bozorgchami H, Priest R, Ologuntoye O, Barnwell S, Dogan A, Herrick K, Takahasi C, Beadell N, Brown B, Jamieson S, Hussain MS, Russman A, Hui F, Wisco D, Uchino K, Khawaja Z, Katzan I, Toth G, Cheng-Ching E, Bain M, Man S, Farrag A, George P, John S, Shankar L, Drofa A, Dahlgren R, Bauer A, Itreat A, Taqui A, Cerejo R, Richmond A, Ringleb P, Bendszus M, Möhlenbruch M, Reiff T, Amiri H, Purrucker J, Herweh C, Pham M, Menn O, Ludwig I, Acosta I, Villar C, Morgan W, Sombutmai C, Hellinger F, Allen E, Bellew M, Gandhi R, Bonwit E, Aly J, Ecker RD, Seder D, Morris J, Skaletsky M, Belden J, Baker C, Connolly LS, Papanagiotou P, Roth C, Kastrup A, Politi M, Brunner F, Alexandrou M, Merdivan H, Ramsey C, Given II C, Renfrow S, Deshmukh V, Sasadeusz K, Vincent F, Thiesing JT, Putnam J, Bhatt A, Kansara A, Caceves D, Lowenkopf T, Yanase L, Zurasky J, Dancer S, Freeman B, Scheibe-Mirek T, Robison J, Rontal A, Roll J, Clark D, Rodriguez M, Fitzsimmons BFM, Zaidat O, Lynch JR, Lazzaro M, Larson T, Padmore L, Das E, Farrow-Schmidt A, Hassan A, Tekle W, Cate C, Jansen O, Cnyrim C, Wodarg F, Wiese C, Binder A, Riedel C, Rohr A, Lang N, Laufs H, Krieter S, Remonda L, Diepers M, Añon J, Nedeltchev K, Kahles T, Biethahn S, Lindner M, Chang V, Gächter C, Esperon C, Guglielmetti M, Arenillas Lara JF, Martínez Galdámez M, Calleja Sanz AI, Cortijo Garcia E, Garcia Bermejo P, Perez S, Mulero Carrillo P, Crespo Vallejo E, Ruiz Piñero M, Lopez Mesonero L, Reyes Muñoz FJ, Brekenfeld C, Buhk JH, Krützelmann A, Thomalla G, Cheng B, Beck C, Hoppe J, Goebell E, Holst B, Grzyska U, Wortmann G, Starkman S, Duckwiler G, Jahan R, Rao N, Sheth S, Ng K, Noorian A, Szeder V, Nour M, McManus M, Huang J, Tarpley J, Tateshima S, Gonzalez N, Ali L, Liebeskind D, Hinman J, Calderon-Arnulphi M, Liang C, Guzy J, Koch S, DeSousa K, Gordon-Perue G, Haussen D, Elhammady M, Peterson E, Pandey V, Dharmadhikari S, Khandelwal P, Malik A, Pafford R, Gonzalez P, Ramdas K, Andersen G, Damgaard D, Von Weitzel-Mudersbach P, Simonsen C, Ruiz de Morales Ayudarte N, Poulsen M, Sørensen L, Karabegovich S, Hjørringgaard M, Hjort N, Harbo T, Sørensen K, Deshaies E, Padalino D, Swarnkar A, Latorre JG, Elnour E, El-Zammar Z, Villwock M, Farid H, Balgude A, Cross L, Hansen K, Holtmannspötter M, Kondziella D, Hoejgaard J, Taudorf S, Soendergaard H, Wagner A, Cronquist M, Stavngaard T, Cortsen M, Krarup LH, Hyldal T, Haring HP, Guggenberger S, Hamberger M, Trenkler J, Sonnberger M, Nussbaumer K, Dominger C, Bach E, Jagadeesan BD, Taylor R, Kim J, Shea K, Tummala R, Zacharatos H, Sandhu D, Ezzeddine M, Grande A, Hildebrandt D, Miller K, Scherber J, Hendrickson A, Jumaa M, Zaidi S, Hendrickson T, Snyder V, Killer-Oberpfalzer M, Mutzenbach J, Weymayr F, Broussalis E, Stadler K, Jedlitschka A, Malek A, Mueller-Kronast N, Beck P, Martin C, Summers D, Day J, Bettinger I, Holloway W, Olds K, Arkin S, Akhtar N, Boutwell C, Crandall S, Schwartzman M, Weinstein C, Brion B, Prothmann S, Kleine J, Kreiser K, Boeckh-Behrens T, Poppert H, Wunderlich S, Koch ML, Biberacher V, Huberle A, Gora-Stahlberg G, Knier B, Meindl T, Utpadel-Fischler D, Zech M, Kowarik M, Seifert C, Schwaiger B, Puri A, Hou S. Effect of general anaesthesia on functional outcome in patients with anterior circulation ischaemic stroke having endovascular thrombectomy versus standard care: a meta-analysis of individual patient data. Lancet Neurol 2018; 17:47-53. [DOI: 10.1016/s1474-4422(17)30407-6] [Citation(s) in RCA: 129] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 10/05/2017] [Accepted: 10/11/2017] [Indexed: 10/18/2022]
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Orłowska A, Żmudziński JF, Smreczak M, Trębas P, Marzec A. Diagnostic Reliability of Different RT-PCR Protocols for the Detection of Bluetongue Virus Serotype 14 (BTV-14). J Vet Res 2017; 61:391-395. [PMID: 29978100 PMCID: PMC5937335 DOI: 10.1515/jvetres-2017-0065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Accepted: 12/04/2017] [Indexed: 11/15/2022] Open
Abstract
Introduction The reverse transcription polymerase chain reaction (RT-PCR) is one of the most extensively used methods for identification of animals infected with bluetongue virus (BTV). There are several RT-PCR protocols published and several real-time RT-PCR (rtRT-PCR) commercial kits available on the market. Because Poland faced BTV-14 infection in 2012, different protocols were implemented in the country to confirm the RT-PCR results positive for this virus. The article presents a comparative study of several RT-PCR protocols and discusses their diagnostic reliability and applicability. Material and Methods Six rtRT-PCR/RT-PCR protocols were compared for the laboratory diagnostic of fourteen BTV-14 isolates circulating in Poland in 2012-2014. Results All 14 isolates were positive in the protocols of Shaw et al. (18), a commercial LSI NS3 kit, and Eschbaumer et al. (5). Four out of fourteen BTV-14 isolates gave positive results in Hoffmann's 2 and 6 protocols and none of the 14 isolates yielded positive results in Maan et al. (8) method. Phylogenetic study of a short fragment of 450 nt of BTV segment 2 (258-696 positions) revealed 100% identity within Polish variants and with Russian and Spanish isolates. Conclusion The paper points to the possible false negative results in the diagnosis of BTV infections depending on the protocol used.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, 24-100 Pulawy, Poland
| | - Jan F Żmudziński
- Department of Virology, National Veterinary Research Institute, 24-100 Pulawy, Poland
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, 24-100 Pulawy, Poland
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, 24-100 Pulawy, Poland
| | - Anna Marzec
- Department of Virology, National Veterinary Research Institute, 24-100 Pulawy, Poland
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Smreczak M, Marzec A, Orłowska A, Trębas P, Reichert M, Kycko A, Koraka P, Osterhaus A, Żmudziński JF. The effect of selected molecules influencing the detrimental host immune response on a course of rabies virus infection in a murine model. Vaccine 2017; 37:4715-4723. [PMID: 29153584 DOI: 10.1016/j.vaccine.2017.10.098] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Revised: 10/27/2017] [Accepted: 10/28/2017] [Indexed: 02/08/2023]
Abstract
Rabies is invariably fatal, when post-exposure prophylaxis is administered after the onset of clinical symptoms. In many countries, rabies awareness is very low and the availability of post-exposure prophylaxis, as recommended by WHO guidelines, is very limited or non-existent, probably as a consequence of high cost. Therefore, new concepts for rabies therapy are needed. Innate immune mechanisms involving the production of pro-inflammatory cytokines and chemokines, activated after rabies infection, are thought to be involved in the neuropathogenesis of rabies. These mechanisms can contribute to a detrimental host response to the rabies virus (RABV) infection. The use of inhibitors of cytokines/chemokines are supposed to extend the survival of a sick individual. Inhibitors of TNF-α, IL-6 and MAPKs were used in RABV inoculated mice to define their influence on the survival time of rabid mice. The study demonstrated that all inhibitors extended mice survival, but at different rates. A log-rank test confirmed the statistically significant survival of mice treated with TNF-α (p = .0087) and MAPKs inhibitors (p = .0024). A delay in the time of onset of rabies was also recorded, in mice given TNF-α and MAPKs inhibitors. The highest virus load was found in the spinal cord and the lowest in the cortex, regardless of the experimental group. Significant TNF-α (p ≤ .0001) and IL-6 (p ≤ .0001) gene upregulation was observed in mice, as a consequence of RABV infection. Regarding MAPKs pathways, there was significant upregulation of the caspase 3 (p = .012, p = .0026) and Mcl-1 (p = .0348, p = .0153) genes, whereas significant downregulation of the cytochrome C (p ≤ .0001), Bcl2 (p = .0002, p = .0007) and JNK3 (p = .042) genes. Rabies pathogenesis is multifactorial, involving both virus and host influences on the course of the infection.
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Affiliation(s)
- Marcin Smreczak
- National Veterinary Research Institute, Department of Virology, Av. Partyzantów 57, 24-100 Puławy, Poland
| | - Anna Marzec
- National Veterinary Research Institute, Department of Virology, Av. Partyzantów 57, 24-100 Puławy, Poland
| | - Anna Orłowska
- National Veterinary Research Institute, Department of Virology, Av. Partyzantów 57, 24-100 Puławy, Poland
| | - Paweł Trębas
- National Veterinary Research Institute, Department of Virology, Av. Partyzantów 57, 24-100 Puławy, Poland
| | - Michał Reichert
- National Veterinary Research Institute, Department of Pathology, Av. Partyzantów 57, 24-100 Puławy, Poland
| | - Anna Kycko
- National Veterinary Research Institute, Department of Pathology, Av. Partyzantów 57, 24-100 Puławy, Poland
| | | | - Ab Osterhaus
- Erasmus Medical Centre (EMC), Rotterdam, The Netherlands
| | - Jan Franciszek Żmudziński
- National Veterinary Research Institute, Department of Virology, Av. Partyzantów 57, 24-100 Puławy, Poland.
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22
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Wasniewski M, Almeida I, Baur A, Bedekovic T, Boncea D, Chaves LB, David D, De Benedictis P, Dobrostana M, Giraud P, Hostnik P, Jaceviciene I, Kenklies S, König M, Mähar K, Mojzis M, Moore S, Mrenoski S, Müller T, Ngoepe E, Nishimura M, Nokireki T, Pejovic N, Smreczak M, Strandbygaard B, Wodak E, Cliquet F. First international collaborative study to evaluate rabies antibody detection method for use in monitoring the effectiveness of oral vaccination programmes in fox and raccoon dog in Europe. J Virol Methods 2016; 238:77-85. [PMID: 27751949 DOI: 10.1016/j.jviromet.2016.10.006] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Revised: 10/06/2016] [Accepted: 10/13/2016] [Indexed: 10/20/2022]
Abstract
The most effective and sustainable method to control and eliminate rabies in wildlife is the oral rabies vaccination (ORV) of target species, namely foxes and raccoon dogs in Europe. According to WHO and OIE, the effectiveness of oral vaccination campaigns should be regularly assessed via disease surveillance and ORV antibody monitoring. Rabies antibodies are generally screened for in field animal cadavers, whose body fluids are often of poor quality. Therefore, the use of alternative methods such as the enzyme-linked immunosorbent assay (ELISA) has been proposed to improve reliability of serological results obtained on wildlife samples. We undertook an international collaborative study to determine if the commercial BioPro ELISA Rabies Ab kit is a reliable and reproducible tool for rabies serological testing. Our results reveal that the overall specificity evaluated on naive samples reached 96.7%, and the coefficients of concordance obtained for fox and raccoon dog samples were 97.2% and 97.5%, respectively. The overall agreement values obtained for the four marketed oral vaccines used in Europe were all equal to or greater than 95%. The coefficients of concordance obtained by laboratories ranged from 87.2% to 100%. The results of this collaborative study show good robustness and reproducibility of the BioPro ELISA Rabies Ab kit.
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Affiliation(s)
- M Wasniewski
- ANSES - Nancy Laboratory for Rabies and Wildlife, Technopôle Agricole et Vétérinaire, CS 40009, 54220 Malzéville, France.
| | - I Almeida
- Laboratório Nacional de Investigação Veterinária (LNIV), Estrada de Benfica No 701, 1549-011 Lisboa, Portugal
| | - A Baur
- Vet Med Labor GmbH, Division of IDEXX Laboratories, Mörikestr. 28/3, 71636 Ludwigsburg, Germany
| | - T Bedekovic
- Croatian Veterinary Institute Laboratory for Rabies/Virology, Savska cesta 143, Zagreb 10000, Croatia
| | - D Boncea
- Institute for Diagnosis and Animal Health, NRL For Rabies, no 63, Dr. Staicovici Street, sector 5 050557 Bucharest, Romania
| | - L B Chaves
- Laboratório de Diagnóstico da Raiva, Instituto Pasteur - Secretaria de Estado da Saúde de São Paulo, Avenida Paulista, 393 - Cerqueira César, São Paulo/SP 01311-000, Brazil
| | - D David
- Kimron Veterinary Institute Rabies Laboratory, Derech Hamacabim street, Bet Dagan 50250, Israel
| | - P De Benedictis
- Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Università 10, 35020 Legnaro, Padova, Italy
| | - M Dobrostana
- Institute of Food Safety, Animal Health and Environment "BIOR" Animal Diseases Diagnostic Laboratory, Lejupes iela 3, LV-1076 Riga, Latvia
| | - P Giraud
- Laboratoire Départemental d'Analyses du Pas-de-Calais, Parc de Hautes technologies des Bonnettes 2, rue du genévrier, 62022 Arras cedex 2, France
| | - P Hostnik
- National Veterinary Institute, Laboratory for Virology, Gerbiceva 60, 1 000 Ljubljana, Slovenia
| | - I Jaceviciene
- National Food and Veterinary Risk Assessment Institute, Virology Unit, Kairiukscio Str. 10, LT-08409 Vilnius, Lithuania
| | - S Kenklies
- Landesamt für Verbraucherschutz Sachsen-Anhalt, Fachbereich Veterinärmedizin, Haferbreiter Weg 132-135, 39576 Stendal, Germany
| | - M König
- Institute of Virology, Faculty of Veterinary Medicine, JLU-Giessen, Schubertstr. 81, 35392 Giessen, Germany
| | - K Mähar
- Estonian Veterinary and Food Laboratory, Virology and Serology Department, Kreutzwaldi 30, 51 006 Tartu, Estonia
| | - M Mojzis
- State Veterinary Institute Zvolen, Pod drahami 918, 960 86 Zvolen, Slovakia
| | - S Moore
- Kansas State University Rabies Laboratory, 2005 Research Park Circle, Manhattan, KS 66502, USA
| | - S Mrenoski
- University Ss Cyril and Methodius in Skopje, Faculty of Veterinary Medicine in Skopje, Department for Microbiology and Immunology, Lazar Pop Trajkov 5-7, 1000 Skopje, Republic of Macedonia
| | - T Müller
- Institute of Molecular Biology, Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald - Insel Riems, Germany
| | - E Ngoepe
- Agricultural Research Council-Onderstepoort Veterinary Institute (ARC-OVI), 100 old Soutpan road, Onderstepoort 0110 Pretoria, South Africa
| | - M Nishimura
- Research Institute for Animal Science In Biochemistry and Toxicology, 3-7-11, Hashimotodai, Midori-ku, Sagamihara-Kanagawa 252-0132, Japan
| | - T Nokireki
- Finnish Food Safety Authority, Evira Department Veterinary Virology, Mustialankatu, 3 00790 Helsinki, Finland
| | - N Pejovic
- Diagnostic Veterinary Laboratory - Podgorica Bul. Dzordza Vasingtona, bb p.fah 69, 81000 Podgorica, Montenegro
| | - M Smreczak
- National Veterinary Research Institute, Department of Virology, Partyzanow av. 57, 24-100 Pulawy, Poland
| | - B Strandbygaard
- DTU, National Veterinary Institute Division of Virology, Lindholm Kalvehave Havnevej 51 DK- 4771 Kalvehave, Denmark
| | - E Wodak
- AGES, Institute for Veterinary Disease Control Mödling, Department for Virology Robert Koch Gasse 17 A-2340 Mödling, Austria
| | - F Cliquet
- ANSES - Nancy Laboratory for Rabies and Wildlife, Technopôle Agricole et Vétérinaire, CS 40009, 54220 Malzéville, France
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23
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Orłowska A, Trębas P, Smreczak M, Marzec A, Żmudziński JF. First detection of bluetongue virus serotype 14 in Poland. Arch Virol 2016; 161:1969-72. [PMID: 27068167 PMCID: PMC4908167 DOI: 10.1007/s00705-016-2857-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Accepted: 03/29/2016] [Indexed: 12/22/2022]
Abstract
Here, we present the first detected cases of bluetongue virus (BTV) in native cattle from Poland. The virus was found in animals located near the Polish-Belarusian and Polish-Lithuanian borders. The positive animals were detected through an official epidemiological surveillance program. A combination of type-specific real-time RT-PCR and phylogenetic tests revealed the presence of BTV serotype 14 (BTV-14). This serotype is highly homologous to the vaccine strain and BTV-14 present in Russia, Lithuania, and Spain (from an animal imported from Lithuania). The most probable route of virus introduction to Poland was transmission through midges. All of the cases were subclinical.
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Affiliation(s)
- Anna Orłowska
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100, Puławy, Poland.
| | - Paweł Trębas
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100, Puławy, Poland
| | - Marcin Smreczak
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100, Puławy, Poland
| | - Anna Marzec
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100, Puławy, Poland
| | - Jan F Żmudziński
- Department of Virology, National Veterinary Research Institute, Partyzantów 57 Avenue, 24-100, Puławy, Poland
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24
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Robardet E, Andrieu S, Rasmussen TB, Dobrostana M, Horton DL, Hostnik P, Jaceviciene I, Juhasz T, Müller T, Mutinelli F, Servat A, Smreczak M, Vanek E, Vázquez-Morón S, Cliquet F. Comparative assay of fluorescent antibody test results among twelve European National Reference Laboratories using various anti-rabies conjugates. J Virol Methods 2013; 191:88-94. [PMID: 23578701 DOI: 10.1016/j.jviromet.2013.03.027] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2012] [Revised: 03/19/2013] [Accepted: 03/25/2013] [Indexed: 11/29/2022]
Abstract
Twelve National Reference Laboratories (NRLs) for rabies have undertaken a comparative assay to assess the comparison of fluorescent antibody test (FAT) results using five coded commercial anti-rabies conjugates (Biorad, Bioveta, Fujirebio, Millipore, and SIFIN conjugates). Homogenized positive brain tissues infected with various lyssavirus species as well as negative samples were analyzed blindly using a standardized FAT procedure. Conjugates B, C, D, and E were found to be significantly more effective than conjugate A for GS7 (French RABV) diluted samples (1/8 and 1/100) while the frequency of concordant results of conjugates C and D differ significantly from conjugates A, B and E for CVS 27. For detection of EBLV-1 strains, conjugates C and D also presented a significantly lower frequency of discordant results compared to conjugates A, B and E. Conjugates B, C and D were found to be significantly more effective than conjugates E and A for EBLV-2 and ABLV samples. In view of these results, conjugates C and D set themselves apart from the others and appeared as the most effective of this 5-panel conjugates. This study clearly demonstrates that the variability of conjugates used by National Reference Laboratories can potentially lead to discordant results and influence assay sensitivity. In case of false negative results this could have a dramatic impact if the animal under investigation is responsible for human exposure. To avoid such situations, confirmatory tests should be implemented.
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Affiliation(s)
- E Robardet
- French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Nancy, Laboratory for Rabies and Wildlife, WHO Collaborating Centre for Research and Management in Zoonoses Control, OIE Reference Laboratory for Rabies, European Union Reference Laboratory for Rabies, European Union Reference Institute for Rabies Serology, Technopôle Agricole et Vétérinaire, BP 40009, 54220 Malzéville cedex, France.
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25
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Fischer M, Wernike K, Freuling CM, Müller T, Aylan O, Brochier B, Cliquet F, Vázquez-Morón S, Hostnik P, Huovilainen A, Isaksson M, Kooi EA, Mooney J, Turcitu M, Rasmussen TB, Revilla-Fernández S, Smreczak M, Fooks AR, Marston DA, Beer M, Hoffmann B. A step forward in molecular diagnostics of lyssaviruses--results of a ring trial among European laboratories. PLoS One 2013; 8:e58372. [PMID: 23520505 PMCID: PMC3592807 DOI: 10.1371/journal.pone.0058372] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2012] [Accepted: 02/04/2013] [Indexed: 11/18/2022] Open
Abstract
Rabies is a lethal and notifiable zoonotic disease for which diagnostics have to meet the highest standards. In recent years, an evolution was especially seen in molecular diagnostics with a wide variety of different detection methods published. Therefore, a first international ring trial specifically designed on the use of reverse transcription polymerase chain reaction (RT-PCR) for detection of lyssavirus genomic RNA was organized. The trial focussed on assessment and comparison of the performance of conventional and real-time assays. In total, 16 European laboratories participated. All participants were asked to investigate a panel of defined lyssavirus RNAs, consisting of Rabies virus (RABV) and European bat lyssavirus 1 and 2 (EBLV-1 and -2) RNA samples, with systems available in their laboratory. The ring trial allowed the important conclusion that conventional RT-PCR assays were really robust assays tested with a high concordance between different laboratories and assays. The real-time RT-PCR system by Wakeley et al. (2005) in combination with an intercalating dye, and the combined version by Hoffmann and co-workers (2010) showed good sensitivity for the detection of all RABV samples included in this test panel. Furthermore, all used EBLV-specific assays, real-time RT-PCRs as well as conventional RT-PCR systems, were shown to be suitable for a reliable detection of EBLVs. It has to be mentioned that differences were seen in the performance between both the individual RT-PCR systems and the laboratories. Laboratories which used more than one molecular assay for testing the sample panel always concluded a correct sample result. Due to the markedly high genetic diversity of lyssaviruses, the application of different assays in diagnostics is needed to achieve a maximum of diagnostic accuracy. To improve the knowledge about the diagnostic performance proficiency testing at an international level is recommended before using lyssavirus molecular diagnostics e.g. for confirmatory testing.
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Affiliation(s)
- Melina Fischer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Kerstin Wernike
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Conrad M. Freuling
- Institute of Molecular Biology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Thomas Müller
- Institute of Molecular Biology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Orhan Aylan
- Etlik Central Veterinary Control and Research Institute, Ankara, Turkey
| | | | - Florence Cliquet
- Anses Nancy technopole agricole et vétérinaire, Malzeville, France
| | - Sonia Vázquez-Morón
- Instituto de Salud Carlos III; Centro Nacional de Microbiología, Majadahonda, Spain
| | | | | | - Mats Isaksson
- Swedish National Veterinary Institute, Uppsala, Sweden
| | | | - Jean Mooney
- Virology Division, Central Veterinary Research Laboratory, Celbridge, Ireland
| | - Mihai Turcitu
- Institute for Diagnosis and Animal Health, Bucharest, Romania
| | - Thomas B. Rasmussen
- National Veterinary Institute, Technical University of Denmark, Lindholm, Denmark
| | | | | | - Anthony R. Fooks
- Animal Health and Veterinary Laboratories Agency, Addlestone, United Kingdom
| | - Denise A. Marston
- Animal Health and Veterinary Laboratories Agency, Addlestone, United Kingdom
| | - Martin Beer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Bernd Hoffmann
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
- * E-mail:
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26
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Picard-Meyer E, Robardet E, Moroz D, Trotsenko Z, Drozhzhe Z, Biarnais M, Solodchuk V, Smreczak M, Cliquet F. Molecular epidemiology of rabies in Ukraine. Arch Virol 2012; 157:1689-98. [DOI: 10.1007/s00705-012-1351-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2012] [Accepted: 04/20/2012] [Indexed: 10/28/2022]
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27
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Cliquet F, Freuling C, Smreczak M, Van der Poel WHM, Horton D, Fooks AR, Robardet E, Picard‐Meyer E, Müller T. Development of harmonised schemes for monitoring and reporting of rabies in animals in the European Union. ACTA ACUST UNITED AC 2010. [DOI: 10.2903/sp.efsa.2010.en-67] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- F Cliquet
- Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES) France
| | - C Freuling
- Friedrich‐Loeffler‐Institut (FLI) Germany
| | - M Smreczak
- National Veterinary Research Institute (NVRI) Poland
| | | | - D Horton
- Veterinary Laboratories Agency (VLA) the United Kingdom
| | - AR Fooks
- Veterinary Laboratories Agency (VLA) the United Kingdom
| | - E Robardet
- Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES) France
| | - E Picard‐Meyer
- Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES) France
| | - T Müller
- Friedrich‐Loeffler‐Institut (FLI) Germany
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28
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Smreczak M, Trebas P, Orłowska A, mudziński JF. Rabies surveillance in Poland (1992-2006). Dev Biol (Basel) 2008; 131:249-256. [PMID: 18634486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Data on the surveillance of rabies in Poland from 1992 to 2006 is presented. Between 1992 and 2006, 22,575 rabies cases were diagnosed. There were 3,963 (17.5%) cases recorded in domestic animals, 18,555 (82.2%) in wildlife and 57 (0.3%) in bats. The peak of the epizootic in wildlife was recorded in 1992 with 3,084 cases. There were 2,547 cases recorded in wildlife with 2,079 (81.6%) found in the red fox. In 1993, the decision was made to apply oral rabies vaccination (ORV) of the red fox as a method of rabies control. The programme was started in western part of Poland, which borders Germany, and extended eastward in the following years. ORV was undertaken twice peryear (spring and autumn). In 2002, the vaccine campaign covered the whole territory of Poland. After 13 years of ORV, rabies incidence decreased sharply, from 3,084 cases in 1992 to 82 in 2006 (a 97% decrease in the number of rabies cases). The epidemiological situation in 2006 points to the constant decrease of rabies cases as a result of ORV. The red fox remains the main reservoir of rabies. The progress made over the past decade demonstrates that Poland is meeting the requirements to eliminate rabies in terrestrial animals.
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Affiliation(s)
- M Smreczak
- National Veterinary Research Institute, Virology Department, Pulawy, Poland.
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29
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McElhinney LM, Marston D, Johnson N, Black C, Matouch O, Lalosevic D, Stankov S, Must K, Smreczak M, Zmudzinski IF, Botvinkin A, Aylan O, Vanek E, Cliquet F, Muller T, Fooks AR. Molecular epidemiology of rabies viruses in Europe. Dev Biol (Basel) 2006; 125:17-28. [PMID: 16878456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Several different strains of classical rabies virus co-circulate in Europe. In order to investigate the roles of the host species and topography on the molecular epidemiology of these viruses, a 400 bp region of the nucleoprotein gene was sequenced and compared with more than 500 European virus isolates. Viruses from 21 European countries were represented including some unique panels of archived isolates from the former Republic of Yugoslavia, Estonia, the Czech Republic, Poland and Austria. Phylogenetic analysis of 198 unique sequences demonstrated numerous groups of viruses clustered at both geographical and host-species levels.
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Affiliation(s)
- L M McElhinney
- Rabies and Wildlife Zoonoses Group, Veterinary Laboratories Agency (Weybridge), WHO Collaborating Centre for the Characterisation of Rabies and Rabies Related Viruses, Surrey, United Kingdom.
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30
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Sadkowska-Todys M, Rosinska M, Smreczak M, Czerwinski M, Zmudzinski JF. Rabies surveillance, trends in animal rabies and human post-exposure treatment in Poland, 1990 -2004. Euro Surveill 2005; 10:226-8. [PMID: 16371685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023] Open
Abstract
This paper describes recent changes in the epizootical and epidemiological situation of rabies in Poland. Analysis of routine surveillance data on animal cases and human post-exposure treatment was performed in order to examine the impact of introduction of cell culture vaccine for human use and the implementation of the fox immunisation programme. The success of the immunisation programme for wild animals has become evident during the past 3 years, as a 9-fold decrease in animal rabies cases has been observed. To date, however, the downward trend in animal rabies cases has had no effect on the frequency of administration of the post-exposure treatment for humans. Moreover, two cases of locally acquired human rabies have occurred in patients who did not receive post-exposure vaccination. These cases prove that rabies should be still considered a public health concern in Poland.
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Affiliation(s)
- M Sadkowska-Todys
- Department of Epidemiology, National Institute of Hygiene, Warsaw, Poland
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31
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Sadkowska-Todys M, Rosinska M, Smreczak M, Czerwinski M, Zmudzinski JF. Rabies surveillance, trends in animal rabies and human post-exposure treatment in Poland, 1990 -2004. Euro Surveill 2005. [DOI: 10.2807/esm.10.11.00580-en] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
This paper describes recent changes in the epizootical and epidemiological situation of rabies in Poland. Analysis of routine surveillance data on animal cases and human post-exposure treatment was performed in order to examine the impact of introduction of cell culture vaccine for human use and the implementation of the fox immunisation programme. The success of the immunisation programme for wild animals has become evident during the past 3 years, as a 9-fold decrease in animal rabies cases has been observed. To date, however, the downward trend in animal rabies cases has had no effect on the frequency of administration of the post-exposure treatment for humans. Moreover, two cases of locally acquired human rabies have occurred in patients who did not receive post-exposure vaccination. These cases prove that rabies should be still considered a public health concern in Poland.
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Affiliation(s)
- M Sadkowska-Todys
- Department of Epidemiology, National Institute of Hygiene, Warsaw, Poland
| | - M Rosinska
- Department of Epidemiology, National Institute of Hygiene, Warsaw, Poland
| | - M Smreczak
- National Veterinary Research Institute, Pulawy, Poland
| | - M Czerwinski
- Department of Epidemiology, National Institute of Hygiene, Warsaw, Poland
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32
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Bourhy H, Kissi B, Audry L, Smreczak M, Sadkowska-Todys M, Kulonen K, Tordo N, Zmudzinski JF, Holmes EC. Ecology and evolution of rabies virus in Europe. J Gen Virol 1999; 80 ( Pt 10):2545-2557. [PMID: 10573146 DOI: 10.1099/0022-1317-80-10-2545] [Citation(s) in RCA: 190] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The evolution of rabies viruses of predominantly European origin was studied by comparing nucleotide sequences of the nucleoprotein and glycoprotein genes, and by typing isolates using RFLP. Phylogenetic analysis of the gene sequence data revealed a number of distinct groups, each associated with a particular geographical area. Such a pattern suggests that rabies virus has spread westwards and southwards across Europe during this century, but that physical barriers such as the Vistula river in Poland have enabled localized evolution. During this dispersal process, two species jumps took place - one into red foxes and another into raccoon dogs, although it is unclear whether virus strains are preferentially adapted to particular animal species or whether ecological forces explain the occurrence of the phylogenetic groups.
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Affiliation(s)
- Hervé Bourhy
- Unité de la Rage1 and Laboratoire des Lyssavirus2, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France
| | - Bachir Kissi
- Unité de la Rage1 and Laboratoire des Lyssavirus2, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France
| | - Laurent Audry
- Unité de la Rage1 and Laboratoire des Lyssavirus2, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France
| | - Marcin Smreczak
- National Veterinary Research Institute, 24-100 Pulawy, Poland3
| | | | - Katariina Kulonen
- National Veterinary and Food Research Institute, PL 368, FIN-00231 Helsinki, Finland5
| | - Noël Tordo
- Unité de la Rage1 and Laboratoire des Lyssavirus2, Institut Pasteur, 25 rue du Docteur Roux, 75724 Paris Cedex 15, France
| | | | - Edward C Holmes
- Wellcome Trust Centre for the Epidemiology of Infectious Disease, Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK6
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