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For: Larsson A. AliView: a fast and lightweight alignment viewer and editor for large datasets. ACTA ACUST UNITED AC 2014;30:3276-8. [PMID: 25095880 PMCID: PMC4221126 DOI: 10.1093/bioinformatics/btu531] [Citation(s) in RCA: 1952] [Impact Index Per Article: 177.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Number Cited by Other Article(s)
201
Zhang X, Shi F, Zhang S, Hosen MI, Zhao C. The Diversity and Taxonomy of Thelephoraceae (Basidiomycota) with Descriptions of Four Species from Southwestern China. J Fungi (Basel) 2024;10:775. [PMID: 39590694 PMCID: PMC11595788 DOI: 10.3390/jof10110775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 11/03/2024] [Accepted: 11/06/2024] [Indexed: 11/28/2024]  Open
202
Ouattara A, Kéré D, Hoareau M, Koïta K, Lefeuvre P, Lett JM. A new monopartite begomovirus infecting Melochia tomentosa in Burkina Faso. Arch Virol 2024;169:240. [PMID: 39510996 DOI: 10.1007/s00705-024-06167-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Accepted: 09/25/2024] [Indexed: 11/15/2024]
203
Magpali L, Ramos E, Picorelli A, Freitas L, Nery MF. Molecular evolution of toothed whale genes reveals adaptations to echolocating in different environments. BMC Genomics 2024;25:1049. [PMID: 39506652 PMCID: PMC11542384 DOI: 10.1186/s12864-024-10910-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 10/16/2024] [Indexed: 11/08/2024]  Open
204
Xia J, Qiu YY, Zhen Y, Chen Z, Li H, Chen B, Zou J, Jiang F. Mercury Immobilization without Methylation in Sulfidogenic Systems Dominated by Sulfur Disproportionating Bacteria. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024;58:19714-19724. [PMID: 39360610 DOI: 10.1021/acs.est.4c03973] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/04/2024]
205
Tolman ER, Beatty CD, Kohli MK, Abbott J, Bybee SM, Frandsen PB, Stephen Gosnell J, Guralnick R, Kalkman VJ, Newton LG, Suvorov A, Ware JL. A molecular phylogeny of the Petaluridae (Odonata: Anisoptera): A 160-Million-Year-Old story of drift and extinction. Mol Phylogenet Evol 2024;200:108185. [PMID: 39209047 DOI: 10.1016/j.ympev.2024.108185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 08/12/2024] [Accepted: 08/26/2024] [Indexed: 09/04/2024]
206
Thaler M, Labarre A, Lovejoy C. Environmental selection and advective transport shape the distribution of two cyst-forming Acantharia clades in the Canadian Arctic. JOURNAL OF PLANKTON RESEARCH 2024;46:542-554. [PMID: 39664261 PMCID: PMC11629782 DOI: 10.1093/plankt/fbae051] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 08/29/2024] [Indexed: 12/13/2024]
207
Fletcher J, Smith A, Honan A, Leary W, Dabney T, Branco S. Inter- and intra-specific metal tolerance variation in ectomycorrhizal fungal Suillus species. MYCORRHIZA 2024;34:417-427. [PMID: 39037611 DOI: 10.1007/s00572-024-01162-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Accepted: 07/04/2024] [Indexed: 07/23/2024]
208
Suissa JS, De La Cerda GY, Graber LC, Jelley C, Wickell D, Phillips HR, Grinage AD, Moreau CS, Specht CD, Doyle JJ, Landis JB. Data-driven guidelines for phylogenomic analyses using SNP data. APPLICATIONS IN PLANT SCIENCES 2024;12:e11611. [PMID: 39628540 PMCID: PMC11610416 DOI: 10.1002/aps3.11611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 05/01/2024] [Accepted: 05/03/2024] [Indexed: 12/06/2024]
209
Bandeira AC, Pereira FM, Leal A, Santos SPO, Barbosa AC, Souza MSPL, de Souza DR, Guimaraes N, Fonseca V, Giovanetti M, Alcantara LCJ, Lessa AAA, Saavedra RC, Tomé LMR, Iani FCM, Barros RM, Purificação SMO, de Jesus JP, Fonseca RR, Araújo MLV. Fatal Oropouche Virus Infections in Nonendemic Region, Brazil, 2024. Emerg Infect Dis 2024;30:2370-2374. [PMID: 39269651 PMCID: PMC11521185 DOI: 10.3201/eid3011.241132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]  Open
210
Lebeau E, Dunn JC. The prevalence and immune response to coinfection by avian haemosporidians in wild Eurasian blackbirds Turdus merula. Parasitology 2024;151:1406-1415. [PMID: 39851095 PMCID: PMC12052428 DOI: 10.1017/s0031182024000829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Revised: 07/01/2024] [Accepted: 07/02/2024] [Indexed: 01/26/2025]
211
Tegally H, Dellicour S, Poongavanan J, Mavian C, Dor G, Fonseca V, Tagliamonte MS, Dunaiski M, Moir M, Wilkinson E, de Albuquerque CFC, Frutuoso LCV, CLIMADE Consortium, Holmes EC, Baxter C, Lessells R, Kraemer MU, Lourenço J, Alcantara LCJ, de Oliveira T, Giovanetti M. Dynamics and ecology of a multi-stage expansion of Oropouche virus in Brazil. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.10.29.24316328. [PMID: 39574858 PMCID: PMC11581102 DOI: 10.1101/2024.10.29.24316328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/01/2024]
212
Yuan Q, Li Y, Dai Y, Wang K, Wang Y, Zhao C. Morphological and molecular identification for four new wood-inhabiting species of Lyomyces (Basidiomycota) from China. MycoKeys 2024;110:67-92. [PMID: 39512912 PMCID: PMC11541102 DOI: 10.3897/mycokeys.110.133108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Accepted: 10/15/2024] [Indexed: 11/15/2024]  Open
213
Chrysostomou AC, The COMESSAR Network, Kostrikis LG. Into the Cauldron of the Variant Soup: Insights into the Molecular Epidemiology and Transition to Endemicity of SARS-CoV-2 in Cyprus (November 2022-February 2024). Viruses 2024;16:1686. [PMID: 39599801 PMCID: PMC11599100 DOI: 10.3390/v16111686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 10/23/2024] [Accepted: 10/24/2024] [Indexed: 11/29/2024]  Open
214
Smith CH, Mejia-Trujillo R, Havird JC. Mitonuclear compatibility is maintained despite relaxed selection on male mitochondrial DNA in bivalves with doubly uniparental inheritance. Evolution 2024;78:1790-1803. [PMID: 38995057 PMCID: PMC11519007 DOI: 10.1093/evolut/qpae108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 06/03/2024] [Accepted: 07/11/2024] [Indexed: 07/13/2024]
215
Ramaekers K, Keyaerts E, Houspie L, Beuselinck K, Reynders M, Lagrou K, Van Ranst M, Rector A. Epidemiology and genetic diversity of human respiratory syncytial virus in Belgium between 2011 and 2019. Virol J 2024;21:270. [PMID: 39468663 PMCID: PMC11520483 DOI: 10.1186/s12985-024-02542-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Accepted: 10/15/2024] [Indexed: 10/30/2024]  Open
216
Xia J, Yuan Z, Jiang F. Global metagenomic survey identifies sewage-derived hgcAB+ microorganisms as key contributors to riverine methylmercury production. Nat Commun 2024;15:9262. [PMID: 39461941 PMCID: PMC11513008 DOI: 10.1038/s41467-024-53479-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 10/14/2024] [Indexed: 10/28/2024]  Open
217
Egan JP, Simons AM, Alavi-Yeganeh MS, Hammer MP, Tongnunui P, Arcila D, Betancur-R R, Bloom DD. Phylogenomics, Lineage Diversification Rates, and the Evolution of Diadromy in Clupeiformes (Anchovies, Herrings, Sardines, and Relatives). Syst Biol 2024;73:683-703. [PMID: 38756097 DOI: 10.1093/sysbio/syae022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 05/01/2024] [Accepted: 05/15/2024] [Indexed: 05/18/2024]  Open
218
Napit R, Elong Ngono A, Mihindukulasuriya KA, Pradhan A, Khadka B, Shrestha S, Droit L, Paredes A, Karki L, Khatiwada R, Tamang M, Chalise BS, Rawal M, Jha BK, Wang D, Handley SA, Shresta S, Manandhar KD. Dengue virus surveillance in Nepal yields the first on-site whole genome sequences of isolates from the 2022 outbreak. BMC Genomics 2024;25:998. [PMID: 39449117 PMCID: PMC11515306 DOI: 10.1186/s12864-024-10879-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 10/08/2024] [Indexed: 10/26/2024]  Open
219
Brigleb PH, Sharp B, Roubidoux EK, Meliopoulos V, Tan S, Livingston B, Morris D, Ripperger T, Lazure L, Balaraman V, Thompson AC, Kleinhenz K, Dimitrov K, Thomas PG, Schultz-Cherry S. Immune History Modifies Disease Severity to HPAI H5N1 Clade 2.3.4.4b Viral Challenge. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.10.23.619695. [PMID: 39484458 PMCID: PMC11526876 DOI: 10.1101/2024.10.23.619695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2024]
220
Du HZ, Lu YH, Cheewangkoon R, Liu JK. Morpho-phylogenetic evidence reveals novel species and new records of Nigrograna (Nigrogranaceae) associated with medicinal plants in Southwestern China. MycoKeys 2024;110:1-33. [PMID: 39493641 PMCID: PMC11525206 DOI: 10.3897/mycokeys.110.132628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2024] [Accepted: 09/23/2024] [Indexed: 11/05/2024]  Open
221
Nardi F, Funari R, Carapelli A, Badano D, Frati F, Cucini C. The complete mitochondrial genome of the shining leaf chafer Mimela junii (Duftschmidt, 1805) (Coleoptera: Scarabaeidae). Mitochondrial DNA B Resour 2024;9:1439-1444. [PMID: 39450202 PMCID: PMC11500510 DOI: 10.1080/23802359.2024.2417936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Accepted: 10/11/2024] [Indexed: 10/26/2024]  Open
222
Seshadri L, Atickem A, Zinner D, Roos C, Zhang L. Whole Genome Analysis Reveals Evolutionary History and Introgression Events in Bale Monkeys. Genes (Basel) 2024;15:1359. [PMID: 39596559 PMCID: PMC11593718 DOI: 10.3390/genes15111359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 10/16/2024] [Accepted: 10/19/2024] [Indexed: 11/28/2024]  Open
223
Adelino TÉR, Pedroso SHSP, Lima M, Tomé LMR, Guimarães NR, Fonseca V, da Silva PEDS, Moreno KMF, Silva ACAE, Pinheiro NR, de Souza CSA, Alcantara LCJ, Giovanetti M, Iani FCDM. Exploring Dengue Infection in a Vaccinated Individual: Preliminary Molecular Diagnosis and Sequencing Insights. Viruses 2024;16:1603. [PMID: 39459936 PMCID: PMC11512295 DOI: 10.3390/v16101603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 10/04/2024] [Accepted: 10/10/2024] [Indexed: 10/28/2024]  Open
224
Zou M, Al-Otibi F, Hyde KD, Wang Y, Pan XJ. New Helminthosporium (Massarinaceae, Dothideomycetes) and Nigrospora (Incertae sedis, Sordariomycetes) species associated with walnut (Juglansregia L.) in China. MycoKeys 2024;109:265-284. [PMID: 39430416 PMCID: PMC11489710 DOI: 10.3897/mycokeys.109.133431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2024] [Accepted: 09/22/2024] [Indexed: 10/22/2024]  Open
225
de Oliveira FS, Azambuja M, Schemberger MO, Nascimento VD, Oliveira JIN, Wolf IR, Nogaroto V, Martins C, Vicari MR. Characterization of hAT DNA transposon superfamily in the genome of Neotropical fish Apareiodon sp. Mol Genet Genomics 2024;299:96. [PMID: 39382723 DOI: 10.1007/s00438-024-02190-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 09/28/2024] [Indexed: 10/10/2024]
226
Ortiz-Morazán AS, Moncada MM, Escobar D, Cabrera-Moreno LA, Fontecha G. Coevolutionary Analysis of the Pfs47-P47Rec Complex: A Bioinformatics Approach. Bioinform Biol Insights 2024;18:11779322241284223. [PMID: 39386977 PMCID: PMC11462556 DOI: 10.1177/11779322241284223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 08/28/2024] [Indexed: 10/12/2024]  Open
227
Huang JH, Lei CY, Shen YL, Tian EJ. Two new species of Pholiota (Agaricales, Strophariaceae) from the southwest of China. MycoKeys 2024;109:171-185. [PMID: 39416397 PMCID: PMC11480669 DOI: 10.3897/mycokeys.109.133879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Accepted: 09/05/2024] [Indexed: 10/19/2024]  Open
228
Owuor DC, Ngoi JM, Nyasimi FM, Murunga N, Nyiro JU, Chaves SS, Nokes DJ, Agoti CN. Local patterns of spread of influenza A H3N2 virus in coastal Kenya over a 1-year period revealed through virus sequence data. Sci Rep 2024;14:23426. [PMID: 39379445 PMCID: PMC11461663 DOI: 10.1038/s41598-024-74218-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 09/24/2024] [Indexed: 10/10/2024]  Open
229
Bourke BP, de Oliveira J, Ergunay K, Linton YM. Leveraging transcriptome sequence read archives for virus detection in wild and colony populations of triatomines (Hemiptera: Reduviidae: Triatominae). Arch Virol 2024;169:215. [PMID: 39365450 PMCID: PMC11452441 DOI: 10.1007/s00705-024-06130-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 08/29/2024] [Indexed: 10/05/2024]
230
Zhu Z, Trenner J, Delker C, Quint M. Tracing the Evolutionary History of the Temperature-Sensing Prion-like Domain in EARLY FLOWERING 3 Highlights the Uniqueness of AtELF3. Mol Biol Evol 2024;41:msae205. [PMID: 39391982 PMCID: PMC11523139 DOI: 10.1093/molbev/msae205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 09/03/2024] [Accepted: 09/17/2024] [Indexed: 10/12/2024]  Open
231
Lescoat C, Perrotte D, Barry S, Oden É, Herbet V, Beaunée G, Tabouret M, Benoit F, Pitel PH, Duquesne V, Bailly X, Thézé J, Kouokam G. Spatio-temporal distribution and international context of bovine viral diarrhoea virus genetic diversity in France. Vet Res 2024;55:129. [PMID: 39363368 PMCID: PMC11451180 DOI: 10.1186/s13567-024-01377-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 08/20/2024] [Indexed: 10/05/2024]  Open
232
Crespo-Bellido A, Hoyer JS, Burgos-Amengual Y, Duffy S. Phylogeographic analysis of Begomovirus coat and replication-associated proteins. J Gen Virol 2024;105:002037. [PMID: 39446128 PMCID: PMC11500754 DOI: 10.1099/jgv.0.002037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 10/04/2024] [Indexed: 10/25/2024]  Open
233
Kryukov AP, Kryukov KA, Collier K, Fang B, Edwards SV. Mitogenomics clarifies the position of the Nearctic magpies (Pica hudsonia and Pica nuttalli) within the Holarctic magpie radiation. Curr Zool 2024;70:618-630. [PMID: 39463698 PMCID: PMC11502158 DOI: 10.1093/cz/zoad048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 10/27/2023] [Indexed: 10/29/2024]  Open
234
Gent V, Lu YJ, Lukhele S, Dhar N, Dangor Z, Hosken N, Malley R, Madhi SA, Kwatra G. Surface protein distribution in Group B Streptococcus isolates from South Africa and identifying vaccine targets through in silico analysis. Sci Rep 2024;14:22665. [PMID: 39349584 PMCID: PMC11442663 DOI: 10.1038/s41598-024-73175-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 09/16/2024] [Indexed: 10/04/2024]  Open
235
Logsdon GA, Ebert P, Audano PA, Loftus M, Porubsky D, Ebler J, Yilmaz F, Hallast P, Prodanov T, Yoo D, Paisie CA, Harvey WT, Zhao X, Martino GV, Henglin M, Munson KM, Rabbani K, Chin CS, Gu B, Ashraf H, Austine-Orimoloye O, Balachandran P, Bonder MJ, Cheng H, Chong Z, Crabtree J, Gerstein M, Guethlein LA, Hasenfeld P, Hickey G, Hoekzema K, Hunt SE, Jensen M, Jiang Y, Koren S, Kwon Y, Li C, Li H, Li J, Norman PJ, Oshima KK, Paten B, Phillippy AM, Pollock NR, Rausch T, Rautiainen M, Scholz S, Song Y, Söylev A, Sulovari A, Surapaneni L, Tsapalou V, Zhou W, Zhou Y, Zhu Q, Zody MC, Mills RE, Devine SE, Shi X, Talkowski ME, Chaisson MJP, Dilthey AT, Konkel MK, Korbel JO, Lee C, Beck CR, Eichler EE, Marschall T. Complex genetic variation in nearly complete human genomes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.24.614721. [PMID: 39372794 PMCID: PMC11451754 DOI: 10.1101/2024.09.24.614721] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/08/2024]
236
Lu W, Nutaratat P, Kumla J, Tibpromma S, Elgorban AM, Karunarathna SC, Suwannarach N. Morphological and molecular identification of two new Marasmiellus species (Omphalotaceae, Agaricales) from Thailand. MycoKeys 2024;109:31-48. [PMID: 39359355 PMCID: PMC11445607 DOI: 10.3897/mycokeys.109.129791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2024] [Accepted: 08/29/2024] [Indexed: 10/04/2024]  Open
237
Quiroga-Carmona M, Liphardt S, Bautista NM, Jayat P, Teta P, Malaney JL, McFarland T, Cook JA, Blumer LM, Herrera ND, Cheviron ZA, Good JM, D’Elía G, Storz JF. Species limits and hybridization in Andean leaf-eared mice (Phyllotis). BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.31.610610. [PMID: 39282442 PMCID: PMC11398333 DOI: 10.1101/2024.08.31.610610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 09/21/2024]
238
Manzo E, Tomasello S. The first complete chloroplast genome for the species-rich genus Anthemis (Asteraceae). Mitochondrial DNA B Resour 2024;9:1248-1253. [PMID: 39301046 PMCID: PMC11411556 DOI: 10.1080/23802359.2024.2405528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 09/12/2024] [Indexed: 09/22/2024]  Open
239
Zhang X, Shi F, Yang K, Zhao C. The diversity and taxonomy of Tomentella (Thelephoraceae, Thelephorales) with descriptions of four new species from Southwestern China. MycoKeys 2024;109:1-29. [PMID: 39328961 PMCID: PMC11422715 DOI: 10.3897/mycokeys.109.132941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Accepted: 08/28/2024] [Indexed: 09/28/2024]  Open
240
Bunyat-Zada AR, Ducharme SE, Cleveland ME, Hoffman ER, Howe GW. Genome Mining Leads to the Identification of a Stable and Promiscuous Baeyer-Villiger Monooxygenase from a Thermophilic Microorganism. Chembiochem 2024;25:e202400443. [PMID: 38991205 DOI: 10.1002/cbic.202400443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Revised: 07/05/2024] [Accepted: 07/11/2024] [Indexed: 07/13/2024]
241
Bang WJ, Seol A, Shin S. Insights from multigene analysis: first report of a Southeast Asian Mosquito, Aedes (Mucidus) laniger (Diptera: Culicidae) on Jeju Island from Korea. Parasit Vectors 2024;17:386. [PMID: 39267122 PMCID: PMC11395179 DOI: 10.1186/s13071-024-06373-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 06/24/2024] [Indexed: 09/14/2024]  Open
242
Tomasello S, Manzo E, Karbstein K. Comparative plastome assembly of the yellow ironweed (Verbesina alternifolia) using Nanopore and Illumina reads. FRONTIERS IN PLANT SCIENCE 2024;15:1429494. [PMID: 39328796 PMCID: PMC11424524 DOI: 10.3389/fpls.2024.1429494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 08/16/2024] [Indexed: 09/28/2024]
243
Topcu C, Vrancken B, Rodosthenous JH, van de Vijver D, Siakallis G, Lemey P, Kostrikis LG. Mapping Transmission Dynamics and Drug Resistance Surveillance in the Cyprus HIV-1 Epidemic (2017-2021). Viruses 2024;16:1449. [PMID: 39339925 PMCID: PMC11437465 DOI: 10.3390/v16091449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 09/05/2024] [Accepted: 09/05/2024] [Indexed: 09/30/2024]  Open
244
Rødsgaard-Jørgensen A, Leal-Dutra CA, de Santana SF, Jensen AR, Marques RE, Aguiar ERGR, Shik JZ. Two +ssRNA mycoviruses cohabiting the fungal cultivar of leafcutter ants. Virol J 2024;21:211. [PMID: 39232804 PMCID: PMC11373429 DOI: 10.1186/s12985-024-02465-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Accepted: 08/08/2024] [Indexed: 09/06/2024]  Open
245
Banyard AC, Bennison A, Byrne AMP, Reid SM, Lynton-Jenkins JG, Mollett B, De Silva D, Peers-Dent J, Finlayson K, Hall R, Blockley F, Blyth M, Falchieri M, Fowler Z, Fitzcharles EM, Brown IH, James J. Detection and spread of high pathogenicity avian influenza virus H5N1 in the Antarctic Region. Nat Commun 2024;15:7433. [PMID: 39227574 PMCID: PMC11372179 DOI: 10.1038/s41467-024-51490-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 08/08/2024] [Indexed: 09/05/2024]  Open
246
Pietluch F, Mackiewicz P, Ludwig K, Gagat P. A New Model and Dating for the Evolution of Complex Plastids of Red Alga Origin. Genome Biol Evol 2024;16:evae192. [PMID: 39240751 DOI: 10.1093/gbe/evae192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 08/14/2024] [Accepted: 08/31/2024] [Indexed: 09/08/2024]  Open
247
Valerio F, Martel C, Stefanescu C, van Nouhuys S, Kankare M, Duplouy A. Wolbachia strain diversity in a complex group of sympatric cryptic parasitoid wasp species. BMC Microbiol 2024;24:319. [PMID: 39223450 PMCID: PMC11368008 DOI: 10.1186/s12866-024-03470-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 08/20/2024] [Indexed: 09/04/2024]  Open
248
Godwe C, Goni OH, San JE, Sonela N, Tchakoute M, Nanfack A, Koro FK, Butel C, Vidal N, Duerr R, Martin DP, de Oliveira T, Peeters M, Altfeld M, Ayouba A, Ndung’u T, Tongo M. Phylogenetic evidence of extensive spatial mixing of diverse HIV-1 group M lineages within Cameroon but not between its neighbours. Virus Evol 2024;10:veae070. [PMID: 39386075 PMCID: PMC11463025 DOI: 10.1093/ve/veae070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 07/12/2024] [Accepted: 08/28/2024] [Indexed: 10/12/2024]  Open
249
Hassanin A, Tu VT, Görföl T, Ngon LQ, Pham PV, Hang CT, Tuan TA, Prot M, Simon-Lorière E, Kemenesi G, Tóth GE, Moulin L, Wurtzer S. Phylogeography of horseshoe bat sarbecoviruses in Vietnam and neighbouring countries. Implications for the origins of SARS-CoV and SARS-CoV-2. Mol Ecol 2024;33:e17486. [PMID: 39161178 DOI: 10.1111/mec.17486] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 07/16/2024] [Accepted: 07/19/2024] [Indexed: 08/21/2024]
250
Horton DM, Feleke Y, Pasquet RS, Javadi F, Melville KA, Delgado-Salinas A, Thulin M, Mithen RF, Gepts P, Egan AN. Phylogenetic systematics of Vigna sensu stricto in the context of Physostigma and allies. AMERICAN JOURNAL OF BOTANY 2024;111:e16381. [PMID: 39107933 DOI: 10.1002/ajb2.16381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 05/14/2024] [Accepted: 05/15/2024] [Indexed: 11/06/2024]
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