1
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Moens M, Biesmeijer JC, Klumpers SGT, Marshall L. Are threatened species special? An assessment of Dutch bees in relation to land use and climate. Ecol Evol 2023; 13:e10326. [PMID: 37502308 PMCID: PMC10369158 DOI: 10.1002/ece3.10326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 06/14/2023] [Accepted: 07/02/2023] [Indexed: 07/29/2023] Open
Abstract
Red Lists are widely used as an indicator of the status and trends of biodiversity and are often used in directing conservation efforts. However, it is unclear whether species with a Least Concern status share a common relationship to environmental correlates compared to species that are on the Red List. To assess this, we focus here on the contribution and correlates of land use, climate, and soil to the occurrence of wild bees in the Netherlands. We used observation data and species distribution models to explain the relation between wild bees and the environment. Non-threatened bees had a relatively higher variable importance of the land use variables to their models, as opposed to the climate variables for the threatened bees. The threatened bees had a smaller extent of occurrence and occupied areas with more extreme climatic conditions. Bees with a Least Concern status showed more positive responses to urban green spaces and Red List species showed a different response to climatic variables, such as temperature and precipitation. Even though Red List bees were found in areas with a higher cover of natural areas, they showed a more selective response to natural land use types. Pastures and crops were the main contributing land use variables and showed almost exclusively a negative correlation with the distribution of all wild bees. This knowledge supports the implementation of appropriate, species-specific conservation measures, including the preservation of natural areas, and the improvement of land use practices in agricultural and urban areas, which may help mitigate the negative impacts of future global change on species' distributions.
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Affiliation(s)
- Merijn Moens
- Naturalis Biodiversity CenterLeidenThe Netherlands
- Institute of Environmental Sciences (CML)Leiden UniversityLeidenThe Netherlands
| | - Jacobus C. Biesmeijer
- Naturalis Biodiversity CenterLeidenThe Netherlands
- Institute of Environmental Sciences (CML)Leiden UniversityLeidenThe Netherlands
| | | | - Leon Marshall
- Naturalis Biodiversity CenterLeidenThe Netherlands
- Agroecology Lab, Interfaculty School of BioengineeringUniversité libre de Bruxelles (ULB)BrusselsBelgium
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2
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Rohner S, Boyi JO, Artemeva V, Zinke O, Kiendl A, Siebert U, Lehnert K. Back from Exile? First Records of Chewing Lice ( Lutridia exilis; Ischnocera; Mallophaga) in Growing Eurasian Otter ( Lutra lutra) Populations from Northern Germany. Pathogens 2023; 12:pathogens12040587. [PMID: 37111473 PMCID: PMC10143350 DOI: 10.3390/pathogens12040587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 03/30/2023] [Accepted: 04/06/2023] [Indexed: 04/29/2023] Open
Abstract
Arthropod ectoparasites of aquatic wildlife often have complex relationships with their host species that have developed over long evolutionary time scales. Specialist parasite occurrence might depend on these hosts' distributions. Eurasian otter (Lutra lutra) populations are recovering in Northern German federal states, such as Schleswig-Holstein and Lower Saxony. Chewing lice (Lutridia exilis; Ischnocera; Mallophaga) are considered otter-specific yet rare parasites in their known range. In 2022, they were recorded for the first time on nine otters found dead in Northern Germany. All otters originated from the years 2021-2022 and were dissected during population health monitoring programs in 2022. Females (n = 6) were 0-5.5 years old and showed signs of disease in five cases. Males (n = 3), in contrast, were 0-1.6 years old and showed disease in a single case. Individual lice intensity of infection ranged from 1 to 75 specimens per otter. No direct adverse health effects of chewing lice on the otters were noted. Lutridia exilis morphological characteristics were documented and measurements were taken to study specialized adaptations that allow lice to attach to semi-aquatic otters. In addition, morphology was compared between lice from different geographical regions and specimens from previous reports. A region of the COI mDNA was amplified to molecularly characterize L. exilis for the first time and detect genetic differences between otter lice populations in Germany. It is believed that specialist parasites reduce in numbers even before their host populations decline. Recovering otter populations in Northern Germany could be an example of a reverse effect, where the comeback of a host species results in the return of a specialist parasite, which reflects an ultimate boost in overall species biodiversity.
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Affiliation(s)
- Simon Rohner
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Werftstrasse 6, 25761 Buesum, Germany
| | - Joy Ometere Boyi
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Werftstrasse 6, 25761 Buesum, Germany
| | - Valentina Artemeva
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Werftstrasse 6, 25761 Buesum, Germany
| | - Olaf Zinke
- Museum der Westlausitz Kamenz, 01717 Kamenz, Germany
| | - Astrid Kiendl
- Aktion Fischotterschutz e.V., Otterzentrum Hankensbüttel, 29386 Hankensbüttel, Germany
| | - Ursula Siebert
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Werftstrasse 6, 25761 Buesum, Germany
| | - Kristina Lehnert
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Werftstrasse 6, 25761 Buesum, Germany
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3
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Herrera JP, Moody J, Nunn CL. Predicting primate-parasite associations using exponential random graph models. J Anim Ecol 2023; 92:710-722. [PMID: 36633380 DOI: 10.1111/1365-2656.13883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 12/07/2022] [Indexed: 01/13/2023]
Abstract
Ecological associations between hosts and parasites are influenced by host exposure and susceptibility to parasites, and by parasite traits, such as transmission mode. Advances in network analysis allow us to answer questions about the causes and consequences of traits in ecological networks in ways that could not be addressed in the past. We used a network-based framework (exponential random graph models or ERGMs) to investigate the biogeographic, phylogenetic and ecological characteristics of hosts and parasites that affect the probability of interactions among nonhuman primates and their parasites. Parasites included arthropods, bacteria, fungi, protozoa, viruses and helminths. We investigated existing hypotheses, along with new predictors and an expanded host-parasite database that included 213 primate nodes, 763 parasite nodes and 2319 edges among them. Analyses also investigated phylogenetic relatedness, sampling effort and spatial overlap among hosts. In addition to supporting some previous findings, our ERGM approach demonstrated that more threatened hosts had fewer parasites, and notably, that this effect was independent of hosts also having a smaller geographic range. Despite having fewer parasites, threatened host species shared more parasites with other hosts, consistent with loss of specialist parasites and threat arising from generalist parasites that can be maintained in other, non-threatened hosts. Viruses, protozoa and helminths had broader host ranges than bacteria, or fungi, and parasites that infect non-primates had a higher probability of infecting more primate species. The value of the ERGM approach for investigating the processes structing host-parasite networks provided a more complete view on the biogeographic, phylogenetic and ecological traits that influence parasite species richness and parasite sharing among hosts. The results supported some previous analyses and revealed new associations that warrant future research, thus revealing how hosts and parasites interact to form ecological networks.
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Affiliation(s)
- James P Herrera
- Duke Lemur Center SAVA Conservation, Duke University, Durham, North Carolina, USA
| | - James Moody
- Department of Sociology, Duke University, Durham, North Carolina, USA
| | - Charles L Nunn
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina, USA.,Duke Global Health Institute, Duke University, Durham, North Carolina, USA
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4
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Wangchu L, Narba D, Matey C, Tripathi A. First report on the diversity and distribution of parasitic monogenoids (Platyhelminthes) from catfishes (Siluriformes) in Arunachal Pradesh, India. J Parasit Dis 2022; 46:285-295. [PMID: 35299901 PMCID: PMC8901938 DOI: 10.1007/s12639-021-01445-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Accepted: 08/23/2021] [Indexed: 12/01/2022] Open
Abstract
Monogenoidea (Platyhelminthes), one of the largest groups of ectoparasitic metazoans worldwide, comprises over 7000 nominal species distributed globally, many of which may represent a serious threat to their fish hosts in aquaculture conditions. The fish fauna of Arunachal Pradesh, India-a global hotspot of biodiversity-is reasonably well-documented, with at least 213 known species (including 69 Siluriformes). These faunas are an essential resource for this tribal state's economy. In sharp contrast, information on parasitic monogenoids of fish from the region is extremely limited, with only nine species described to date. In this study, 21 species of catfishes were collected and examined with the aim of expanding the current knowledge of the diversity and distribution of monogenoid species from Arunachal Pradesh. 15 (62.5%) of the 21 catfish species studied were infected with a total of 25 monogenoid species (11 previously described and 14 newly discovered in this study). Ten species of catfish were the first host records for new parasite species, while two species of catfish were new host records for previously known monogenoids. Arunachal Pradesh represents new geographic locality records for all 11 previously described parasite species, thus significantly expanding their distribution area from North and South India to extreme Northeast India. The patterns of parasite species richness in relation to three ecological traits (fish habitat, body size, and elevation) as well as host specificity across the 21 examined species of catfishes, the unique problem of too many parasite species in Wallago attu, and the future of parasitology in Arunachal Pradesh, India are discussed.
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Affiliation(s)
- Leki Wangchu
- Jawaharlal Nehru College, Pasighat, East, Siang, 791103 Arunachal Pradesh India
| | - Dobiam Narba
- Dera Natung Government College, Itanagar, 791 111 Arunachal Pradesh India
| | - Chawan Matey
- Department of Zoology, University of Lucknow, Lucknow, 226 007 Uttar Pradesh India
| | - Amit Tripathi
- Department of Zoology, University of Lucknow, Lucknow, 226 007 Uttar Pradesh India
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5
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Gibson AK. Genetic diversity and disease: The past, present, and future of an old idea. Evolution 2022; 76:20-36. [PMID: 34796478 PMCID: PMC9064374 DOI: 10.1111/evo.14395] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 10/03/2021] [Accepted: 10/08/2021] [Indexed: 01/21/2023]
Abstract
Why do infectious diseases erupt in some host populations and not others? This question has spawned independent fields of research in evolution, ecology, public health, agriculture, and conservation. In the search for environmental and genetic factors that predict variation in parasitism, one hypothesis stands out for its generality and longevity: genetically homogeneous host populations are more likely to experience severe parasitism than genetically diverse populations. In this perspective piece, I draw on overlapping ideas from evolutionary biology, agriculture, and conservation to capture the far-reaching implications of the link between genetic diversity and disease. I first summarize the development of this hypothesis and the results of experimental tests. Given the convincing support for the protective effect of genetic diversity, I then address the following questions: (1) Where has this idea been put to use, in a basic and applied sense, and how can we better use genetic diversity to limit disease spread? (2) What new hypotheses does the established disease-diversity relationship compel us to test? I conclude that monitoring, preserving, and augmenting genetic diversity is one of our most promising evolutionarily informed strategies for buffering wild, domesticated, and human populations against future outbreaks.
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Affiliation(s)
- Amanda Kyle Gibson
- Department of Biology University of Virginia Charlottesville Virginia 22903
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6
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Islam S, Rahman MK, Uddin MH, Rahman MM, Chowdhury MNU, Hassan MM, Magalhaes RS, Islam A. Prevalence and diversity of gastrointestinal parasites in free-ranging rhesus macaques (Macaca mulatta) in different land gradients of Bangladesh. Am J Primatol 2021; 84:e23345. [PMID: 34783056 DOI: 10.1002/ajp.23345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Revised: 09/14/2021] [Accepted: 11/04/2021] [Indexed: 11/08/2022]
Abstract
Rhesus macaques are considered an important reservoir of different gastrointestinal (GI) zoonotic parasites affecting livestock and humans. Loads of GI parasites in the free-ranging rhesus macaques living in close proximity to communities in Bangladesh are still unknown. To estimate the prevalence and diversity of zoonotic GI parasites in rhesus macaques of Bangladesh, a total of 182 freshly voided fecal samples were collected from macaques living in rural (N = 67), peri-urban (N = 57), urban (N = 28), and Safari park (N = 30) between October 2015 and December 2016. All samples were tested by direct smear, sedimentation, flotation, and the McMaster techniques. A total of fourteen different taxa of GI parasites were detected, revealing an overall prevalence of 54.4% (n = 99; 95% confidence interval [CI]: 46.9-61.8). The prevalence of GI parasites was found to be significantly correlated with the mean parasitic taxa per individual in a group (r = 0.90; p = 0.002). The multivariable logistic regression analysis showed that the overall prevalence of GI parasites in macaques was significantly higher in those inhabiting rural areas (62.69%; odds ratio [OR]: 7.22; p = 0.001) and in macaques with interactions with other animals (60.98%; OR: 5.49; p = 0.005). Our results also indicated that the prevalence of Strongyloides spp. and Balantidium coli infections varied significantly between land gradients. Our results also indicate that macaques frequently visit human settlements for food and are found interacting with domestic animals. In conclusion, the high prevalence of zoonotic GI parasite infection in rhesus macaques found in our study may pose a significant public health risk to communities, particularly in rural areas of Bangladesh. Health promotion to at-risk communities focusing on limiting contact with rhesus macaques is necessary to mitigate potential zoonotic transmission.
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Affiliation(s)
- Shariful Islam
- Institute of Epidemiology, Disease Control and Research (IEDCR), Dhaka, Bangladesh.,EcoHealth Alliance, New York, New York, USA
| | - Md Kaisar Rahman
- Institute of Epidemiology, Disease Control and Research (IEDCR), Dhaka, Bangladesh.,EcoHealth Alliance, New York, New York, USA
| | - Md Helal Uddin
- Faculty of Veterinary Medicine, Chattogram Veterinary and Animal Sciences University, Chattogram, Bangladesh
| | - Md Mustafizur Rahman
- Department of Bangladesh Forest, Ministry of Environment and Forests, Government of the People's Republic of Bangladesh, Dhaka, Bangladesh
| | - Mohammad N U Chowdhury
- Department of Bangladesh Forest, Ministry of Environment and Forests, Government of the People's Republic of Bangladesh, Dhaka, Bangladesh
| | - Mohammad M Hassan
- Faculty of Veterinary Medicine, Chattogram Veterinary and Animal Sciences University, Chattogram, Bangladesh
| | - Ricardo S Magalhaes
- School of Veterinary Science, UQ Spatial Epidemiology Laboratory, The University of Queensland, Brisbane, Australia.,Children's Environment Program, UQ Children's Health Research Centre, The University of Queensland, Australia
| | - Ariful Islam
- EcoHealth Alliance, New York, New York, USA.,Centre for Integrative Ecology, School of Life and Environmental Science, Deakin University, Victoria, Australia
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7
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Farrell MJ, Park AW, Cressler CE, Dallas T, Huang S, Mideo N, Morales-Castilla I, Davies TJ, Stephens P. The ghost of hosts past: impacts of host extinction on parasite specificity. Philos Trans R Soc Lond B Biol Sci 2021; 376:20200351. [PMID: 34538147 PMCID: PMC8450631 DOI: 10.1098/rstb.2020.0351] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/11/2021] [Indexed: 11/29/2022] Open
Abstract
A growing body of research is focused on the extinction of parasite species in response to host endangerment and declines. Beyond the loss of parasite species richness, host extinction can impact apparent parasite host specificity, as measured by host richness or the phylogenetic distances among hosts. Such impacts on the distribution of parasites across the host phylogeny can have knock-on effects that may reshape the adaptation of both hosts and parasites, ultimately shifting the evolutionary landscape underlying the potential for emergence and the evolution of virulence across hosts. Here, we examine how the reshaping of host phylogenies through extinction may impact the host specificity of parasites, and offer examples from historical extinctions, present-day endangerment, and future projections of biodiversity loss. We suggest that an improved understanding of the impact of host extinction on contemporary host-parasite interactions may shed light on core aspects of disease ecology, including comparative studies of host specificity, virulence evolution in multi-host parasite systems, and future trajectories for host and parasite biodiversity. This article is part of the theme issue 'Infectious disease macroecology: parasite diversity and dynamics across the globe'.
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Affiliation(s)
- Maxwell J. Farrell
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada
| | | | - Clayton E. Cressler
- School of Biological Sciences, University of Nebraska, Lincoln, NE 68588, USA
| | - Tad Dallas
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70806, USA
- Department of Biological Sciences, University of South Carolina, Columbia, SC, 29208, USA
| | - Shan Huang
- Senckenberg Biodiversity and Climate Research Centre (SBiK-F), Frankfurt am Main, Germany
| | - Nicole Mideo
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada
| | - Ignacio Morales-Castilla
- Universidad de Alcalá, GloCEE - Global Change Ecology and Evolution Research Group, Departamento de Ciencias de la Vida, 28805 Alcalá de Henares, Madrid, Spain
| | - T. Jonathan Davies
- Department of Botany, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
- Department of Botany and Plant Biotechnology, African Centre for DNA Barcoding, University of Johannesburg, Johannesburg 2092, South Africa
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8
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Abstract
Future biodiversity loss threatens the integrity of complex ecological associations, including among hosts and parasites. Almost half of primate species are threatened with extinction, and the loss of threatened hosts could negatively impact parasite associations and ecosystem functions. If endangered hosts are highly connected in host-parasite networks, then future host extinctions will also drive parasite extinctions, destabilizing ecological networks. If threatened hosts are not highly connected, however, then network structure should not be greatly affected by the loss of threatened hosts. Networks with high connectance, modularity, nestedness and robustness are more resilient to perturbations such as the loss of interactions than sparse, nonmodular and non-nested networks. We analysed the interaction network involving 213 primates and 763 parasites and removed threatened primates (114 species) to simulate the effects of extinction. Our analyses revealed that connections to 23% of primate parasites (176 species) may be lost if threatened primates go extinct. In addition, measures of network structure were affected, but in varying ways because threatened hosts have fewer parasite interactions than non-threatened hosts. These results reveal that host extinctions will perturb the host-parasite network and potentially lead to secondary extinctions of parasites. The ecological consequences of these extinctions remain unclear. This article is part of the theme issue 'Infectious disease macroecology: parasite diversity and dynamics across the globe'.
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Affiliation(s)
- James P Herrera
- Duke Lemur Center SAVA Conservation, Duke University, Durham, NC, USA
| | - James Moody
- Department of Sociology, Duke University, Durham, NC, USA
| | - Charles L Nunn
- Department of Evolutionary Anthropology, Duke University, Durham, NC, USA.,Duke Global Health Institute, Duke University, Durham, NC, USA
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9
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Thilakarathne SS, Rajakaruna RS, Fernando DD, Rajapakse RPVJ, Perera PK. Gastro-intestinal parasites in two subspecies of toque macaque (Macaca sinica) in Sri Lanka and their zoonotic potential. Vet Parasitol Reg Stud Reports 2021; 24:100558. [PMID: 34024374 DOI: 10.1016/j.vprsr.2021.100558] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 02/28/2021] [Accepted: 03/16/2021] [Indexed: 12/22/2022]
Abstract
Gastro-intestinal (GI) parasites of primates have a greater potential of becoming zoonotic. This potential may vary in different primates based on multiple factors such as proximity to human settlements and the climate of their habitat. We examined the GI parasites in two subspecies of toque macaque: Macaca sinica sinica (confined to the dry zone) and Macaca sinica aurifrons (confined to the wet zone) of Sri Lanka. Fresh faecal samples were collected and analysed following a modified Sheather's sucrose floatation method. A total of 90.8% (89/98) macaques were infected with one or more parasite species. There was no difference in the overall prevalence of GI parasites between the two subspecies, M. s. aurifrons (95.9%) and M. s. sinica (85.7%; χ2;χ = 3.059, p = 0.080). Sixteen parasite species were recorded including, 15 species in the M. s. sinica and 12 species in the M. s. aurifrons. Among the helminths identified, Anatrichosoma sp., Ancylostoma spp., Capillaria spp., Oesophagostomum /Bunostomum spp. and Physaloptera spp. are known to be zoonotic while Ascaris spp., Enterobius sp., Strongyloides spp. and Trichuris spp. have both zoonotic and anthroponotic potential. Among the protozoans, Balantidium coli and Buxtonella sp. are known to be zoonotic, while Entamoeba spp. and Cryptosporidium spp. have both anthroponotic and zoonotic potential. This study provides the first record of Anatrichosoma sp. and Buxtonella sp. in Sri Lanka and the first record of Cryptosporidium spp. in M. s. aurifrons. The molecular data allowed further identification and differentiation of Entamoeba nuttalli and E. coli that are known to be zoonotic and anthroponotic, respectively. The two subspecies of macaques have close interactions with humans; hence, in-depth epidemiological studies are required to understand the potential public-health risks to humans and conservation implications for macaque populations.
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Affiliation(s)
| | - Rupika S Rajakaruna
- Department of Zoology, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka
| | - Deepani D Fernando
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine and Animal Sciences, University of Peradeniya, Peradeniya, Sri Lanka; QIMR Berghofer Medical Research Institute, 300 Herston Road, Herston, QLD 4006, Australia
| | - R P V J Rajapakse
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine and Animal Sciences, University of Peradeniya, Peradeniya, Sri Lanka
| | - Piyumali K Perera
- Department of Zoology, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka.
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10
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Johnson CK, Hitchens PL, Pandit PS, Rushmore J, Evans TS, Young CCW, Doyle MM. Global shifts in mammalian population trends reveal key predictors of virus spillover risk. Proc Biol Sci 2020; 287:20192736. [PMID: 32259475 PMCID: PMC7209068 DOI: 10.1098/rspb.2019.2736] [Citation(s) in RCA: 185] [Impact Index Per Article: 46.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Emerging infectious diseases in humans are frequently caused by pathogens originating from animal hosts, and zoonotic disease outbreaks present a major challenge to global health. To investigate drivers of virus spillover, we evaluated the number of viruses mammalian species have shared with humans. We discovered that the number of zoonotic viruses detected in mammalian species scales positively with global species abundance, suggesting that virus transmission risk has been highest from animal species that have increased in abundance and even expanded their range by adapting to human-dominated landscapes. Domesticated species, primates and bats were identified as having more zoonotic viruses than other species. Among threatened wildlife species, those with population reductions owing to exploitation and loss of habitat shared more viruses with humans. Exploitation of wildlife through hunting and trade facilitates close contact between wildlife and humans, and our findings provide further evidence that exploitation, as well as anthropogenic activities that have caused losses in wildlife habitat quality, have increased opportunities for animal–human interactions and facilitated zoonotic disease transmission. Our study provides new evidence for assessing spillover risk from mammalian species and highlights convergent processes whereby the causes of wildlife population declines have facilitated the transmission of animal viruses to humans.
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Affiliation(s)
- Christine K Johnson
- EpiCenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Peta L Hitchens
- Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Werribee, VIC 3030, Australia
| | - Pranav S Pandit
- EpiCenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Julie Rushmore
- EpiCenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Tierra Smiley Evans
- EpiCenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Cristin C W Young
- EpiCenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
| | - Megan M Doyle
- EpiCenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, CA 95616, USA
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11
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Fanelli A, Menardi G, Chiodo M, Giordano O, Ficetto G, Bessone M, Lasagna A, Carpignano MG, Molinar Min A, Gugiatti A, Meneguz PG, Tizzani P. Gastroenteric parasite of wild Galliformes in the Italian Alps: implication for conservation management. Parasitology 2020; 147:471-7. [PMID: 31852557 DOI: 10.1017/S003118201900177X] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
This study provides insights about the diversity, prevalence and distribution of alpine wild galliformes gastrointestinal parasite community, trying to fill a gap in the scientific information currently available in scientific literature. The analysis included three host species: 77 rock partridge (Alectoris graeca saxatilis), 83 black grouse (Tetrao tetrix tetrix) and 26 rock ptarmigan (Lagopus muta helveticus) shot during the hunting seasons 2008-2015. Parasites isolated were Ascaridia compar, Capillaria caudinflata and cestodes. The rock ptarmigan was free from gastrointestinal parasites, whereas the most prevalent helminth (37%) was A. compar in both black grouse and rock partridge. C. caudinflata occurrence was significantly higher in black grouse (prevalence = 10%, mean abundance = 0.6 parasites/sampled animal) than in rock partridge (prevalence = 1.20%, mean abundance = 0.01 parasites/sampled animal). Significant differences were detected among hunting districts. A. compar was found with a significant higher degree of infestation in the hunting districts in the northern part of the study area whereas cestodes abundance was higher in Lanzo Valley. Quantitative analysis of risk factors was carried out using a generalized linear model (GLM) only on the most common parasite (A. compar). Latitude was the only factors associated with infestation risk (OR = 52.4). This study provides information on the composition and variability of the parasite community in the alpine Galliformes species.
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12
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Albani A, De Liberato C, Wahid I, Berrilli F, Riley EP, Cardeti G, Ngakan PO, Carosi M. Preliminary Assessment of Gastrointestinal Parasites in Two Wild Groups of Endangered Moor Macaques (Macaca maura) from Sulawesi. INT J PRIMATOL 2019; 40:671-86. [DOI: 10.1007/s10764-019-00114-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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13
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Barelli C, Gonzalez-Astudillo V, Mundry R, Rovero F, Hauffe HC, Gillespie TR. Altitude and human disturbance are associated with helminth diversity in an endangered primate, Procolobus gordonorum. PLoS One 2019; 14:e0225142. [PMID: 31800582 PMCID: PMC6892551 DOI: 10.1371/journal.pone.0225142] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Accepted: 10/29/2019] [Indexed: 11/19/2022] Open
Abstract
Gastrointestinal parasites colonizing the mammalian gut influence the host immune system and health. Parasite infections, mainly helminths, have been studied intensively in both humans and non-human animals, but relatively rarely within a conservation framework. The Udzungwa red colobus monkey (Procolobus gordonorum) is an endangered endemic primate species living in the Udzungwa Mountains of Tanzania, a global biodiversity hotspot. Since this endemic primate species is highly sensitive to human disturbance, here we investigate whether habitat type (driven by natural and human-induced factors) is associated with helminth diversity. Using standard flotation and sedimentation techniques, we analyzed 251 fecal samples belonging to 25 social groups from four different forest blocks within the Udzungwa Mountains. Five parasitic helminth taxa were recovered from Udzungwa red colobus, including Trichuris sp., Strongyloides fulleborni, S. stercoralis, a strongylid nematode and Colobenterobius sp. We used Generalized Linear Mixed Models to explore the contribution of habitat type, altitude and fecal glucocorticoid levels (as biomarkers of stress) in predicting gut parasite variation. Although some parasites (e.g., Trichuris sp.) infected more than 50% of individuals, compared to others (e.g., Colobenterobius sp.) that infected less than 3%, both parasite richness and prevalence did not differ significantly across forests, even when controlling for seasonality. Stress hormone levels also did not predict variation in parasite richness, while altitude could explain it resulting in lower richness at lower altitudes. Because human activities causing disturbance are concentrated mainly at lower altitudes, we suggest that protection of primate forest habitat preserves natural diversity at both macro- and microscales, and that the importance of the latter should not be underestimated.
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Affiliation(s)
- Claudia Barelli
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione E. Mach, San Michele all’Adige, Trento, Italy
- MUSE–Science Museum, Tropical Biodiversity Section, Trento, Italy
| | - Viviana Gonzalez-Astudillo
- Department of Environmental Sciences and Program in Population Biology, Ecology and Evolutionary Biology, Emory University, Atlanta, GA, United States of America
- Pathology Resident, California Animal Health & Food Safety Laboratory, University of California, Davis, CA, United States of America
| | - Roger Mundry
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Francesco Rovero
- MUSE–Science Museum, Tropical Biodiversity Section, Trento, Italy
- Department of Biology, University of Florence, Florence, Italy
| | - Heidi C. Hauffe
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione E. Mach, San Michele all’Adige, Trento, Italy
| | - Thomas R. Gillespie
- Department of Environmental Sciences and Program in Population Biology, Ecology and Evolutionary Biology, Emory University, Atlanta, GA, United States of America
- Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, United States of America
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Chakraborty D, Reddy M, Tiwari S, Umapathy G. Land Use Change Increases Wildlife Parasite Diversity in Anamalai Hills, Western Ghats, India. Sci Rep 2019; 9:11975. [PMID: 31427608 PMCID: PMC6700131 DOI: 10.1038/s41598-019-48325-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Accepted: 07/31/2019] [Indexed: 11/23/2022] Open
Abstract
Anthropogenic landscape changes such as land use change and habitat fragmentation are known to alter wildlife diversity. Since host and parasite diversities are strongly connected, landscape changes are also likely to change wildlife parasite diversity with implication for wildlife health. However, research linking anthropogenic landscape change and wildlife parasite diversity is limited, especially comparing effects of land use change and habitat fragmentation, which often cooccur but may affect parasite diversity substantially differently. Here, we assessed how anthropogenic land use change (presence of plantation, livestock foraging and human settlement) and habitat fragmentation may change the gastrointestinal parasite diversity of wild mammalian host species (n = 23) in Anamalai hills, India. We found that presence of plantations, and potentially livestock, significantly increased parasite diversity due possibly to spillover of parasites from livestock to wildlife. However, effect of habitat fragmentation on parasite diversity was not significant. Together, our results showed how human activities may increase wildlife parasite diversity within human-dominated landscape and highlighted the complex pattern of parasite diversity distribution as a result of cooccurrence of multiple anthropogenic landscape changes.
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Affiliation(s)
- Debapriyo Chakraborty
- CSIR-Laboratory for the Conservation of Endangered Species, Centre for Cellular and Molecular Biology, Hyderabad, 500048, India
- EP57 P C Ghosh Road, Kolkata, 700048, India
| | - Mahender Reddy
- CSIR-Laboratory for the Conservation of Endangered Species, Centre for Cellular and Molecular Biology, Hyderabad, 500048, India
| | - Sunil Tiwari
- CSIR-Laboratory for the Conservation of Endangered Species, Centre for Cellular and Molecular Biology, Hyderabad, 500048, India
| | - Govindhaswamy Umapathy
- CSIR-Laboratory for the Conservation of Endangered Species, Centre for Cellular and Molecular Biology, Hyderabad, 500048, India.
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15
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Herrera JP, Chakraborty D, Rushmore J, Altizer S, Nunn C. The changing ecology of primate parasites: Insights from wild-captive comparisons. Am J Primatol 2019; 81:e22991. [PMID: 31265141 DOI: 10.1002/ajp.22991] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 04/10/2019] [Accepted: 04/21/2019] [Indexed: 12/23/2022]
Abstract
Host movements, including migrations or range expansions, are known to influence parasite communities. Transitions to captivity-a rarely studied yet widespread human-driven host movement-can also change parasite communities, in some cases leading to pathogen spillover among wildlife species, or between wildlife and human hosts. We compared parasite species richness between wild and captive populations of 22 primate species, including macro- (helminths and arthropods) and micro-parasites (viruses, protozoa, bacteria, and fungi). We predicted that captive primates would have only a subset of their native parasite community, and would possess fewer parasites with complex life cycles requiring intermediate hosts or vectors. We further predicted that captive primates would have parasites transmitted by close contact and environmentally-including those shared with humans and other animals, such as commensals and pests. We found that the composition of primate parasite communities shifted in captive populations, especially because of turnover (parasites detected in captivity but not reported in the wild), but with some evidence of nestedness (holdovers from the wild). Because of the high degree of turnover, we found no significant difference in overall parasite richness between captive and wild primates. Vector-borne parasites were less likely to be found in captivity, whereas parasites transmitted through either close or non-close contact, including through fecal-oral transmission, were more likely to be newly detected in captivity. These findings identify parasites that require monitoring in captivity and raise concerns about the introduction of novel parasites to potentially susceptible wildlife populations during reintroduction programs.
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Affiliation(s)
- James P Herrera
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina
| | - Debapriyo Chakraborty
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina.,EcoHealth Alliance, New York, New York
| | - Julie Rushmore
- Epicenter for Disease Dynamics, One Health Institute, School of Veterinary Medicine, University of California, Davis, California.,Odum School of Ecology, University of Georgia, Athens
| | - Sonia Altizer
- Odum School of Ecology, University of Georgia, Athens
| | - Charles Nunn
- Department of Evolutionary Anthropology, Duke University, Durham, North Carolina.,Duke Global Health Institute, Duke University, Durham, North Carolina
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16
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Stephens PR, Altizer S, Ezenwa VO, Gittleman JL, Moan E, Han B, Huang S, Pappalardo P. Parasite sharing in wild ungulates and their predators: Effects of phylogeny, range overlap, and trophic links. J Anim Ecol 2019; 88:1017-1028. [PMID: 30921468 DOI: 10.1111/1365-2656.12987] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Accepted: 01/26/2019] [Indexed: 12/12/2022]
Abstract
Understanding factors that facilitate interspecific pathogen transmission is a central issue for conservation, agriculture, and human health. Past work showed that host phylogenetic relatedness and geographical proximity can increase cross-species transmission, but further work is needed to examine the importance of host traits, and species interactions such as predation, in determining the degree to which parasites are shared between hosts. Here we consider the factors that predict patterns of parasite sharing across a diverse assemblage of 116 wild ungulates (i.e., hoofed mammals in the Artiodactyla and Perissodactyla) and nearly 900 species of micro- and macroparasites, controlling for differences in total parasite richness and host sampling effort. We also consider the effects of trophic links on parasite sharing between ungulates and carnivores. We tested for the relative influence of range overlap, phylogenetic distance, body mass, and ecological dissimilarity (i.e., the distance separating species in a Euclidean distance matrix based on standardized traits) on parasite sharing. We also tested for the effects of variation in study effort as a potential source of bias in our data, and tested whether carnivores reported to feed on ungulates have more ungulate parasites than those that use other resources. As in other groups, geographical range overlap and phylogenetic similarity predicted greater parasite community similarity in ungulates. Ecological dissimilarity showed a weak negative relationship with parasite sharing. Counter to our expectations, differences, not similarity, in host body mass predicted greater parasite sharing between pairs of ungulate hosts. Pairs of well-studied host species showed higher overlap than poorly studied species, although including sampling effort did not reduce the importance of biological traits in our models. Finally, carnivores that feed on ungulates harboured a greater richness of ungulate helminths. Overall, we show that the factors that predict parasite sharing in wild ungulates are similar to those known for other mammal groups, and demonstrate the importance of controlling for heterogeneity in host sampling effort in future analyses of parasite sharing. We also show that ecological interactions, in this case trophic links via predation, can allow sharing of some parasite species among distantly related host species.
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Affiliation(s)
| | - Sonia Altizer
- Odum School of Ecology, University of Georgia, Athens, Georgia
| | - Vanessa O Ezenwa
- Odum School of Ecology, University of Georgia, Athens, Georgia.,Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, Georgia
| | | | - Emili Moan
- Department of Statistics, North Carolina State University, Raleigh, North Carolina
| | - Barbara Han
- Cary Institute of Ecosystem Studies, Millbrook, New York
| | - Shan Huang
- Senckenberg Biodiversity and Climate Research Centre (BiK-F), Frankfurt (Main), Germany
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17
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Affiliation(s)
- Tad A. Dallas
- Centre for Ecological Change, Univ. of Helsinki; Helsinki Finland
- Odum School of Ecology, Univ. of Georgia; Athens GA 30602 USA
| | | | | | - Andrew W. Park
- Odum School of Ecology, Univ. of Georgia; Athens GA 30602 USA
- Center for the Ecology of Infectious Diseases, Univ. of Georgia; Athens GA USA
| | | | - John M. Drake
- Odum School of Ecology, Univ. of Georgia; Athens GA 30602 USA
- Center for the Ecology of Infectious Diseases, Univ. of Georgia; Athens GA USA
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18
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Mironov SV, Efeykin BD, Ibanez JC, Sumaya AM, Tolstenkov OO. Captive individuals of endangered Philippine raptors maintain native feather mites (Acariformes: Pterolichoidea) species. Int J Parasitol Parasites Wildl 2018; 7:116-133. [PMID: 29988785 PMCID: PMC6031967 DOI: 10.1016/j.ijppaw.2018.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Revised: 03/15/2018] [Accepted: 03/16/2018] [Indexed: 11/29/2022]
Abstract
Endangered species of hosts are coupled with endangered species of parasites, which share the risk of co-extinction. Conservation efforts sometimes include breeding of rare species in captivity. Data on parasites of captive populations of endangered species is scarce and the ability of small numbers of captive host individuals to support the biodiversity of native parasites is limited. Examination of ectosymbionts of the critically endangered Philippine eagles and the endangered Mindanao Hawk-Eagle kept at the Philippine Eagle Center, Philippines, revealed three feather mite species despite regular treatment with insecticide powder. No other ectosymbiont taxa were detected. Studies in morphology and molecular phylogeny of these feather mites based on mitochondrial and nuclear DNA markers indicate that species found were typical for Accipitridae. Three new pterolichoid feather mite species (Acari: Pterolichoidea) were described from two species of eagles (Accipitriformes: Accipitridae) endemic to the Philippines: Hieracolichus philippinensis sp. n. (Gabuciniidae) and Pseudalloptinus pithecophagae sp. n. (Pterolichidae) from the Great Philippine Eagle Pithecophaga jefferyi Ogilvie-Grant, 1896, and Pseudogabucinia nisaeti sp. n. (Kramerellidae) from the Mindanao Hawk-Eagle Nisaetus pinskeri Gould, 1863. The presence of H. philippinensis on P. jefferyi supports the recent finding that the Great Philippine Eagle belongs to the lineage of serpent eagles (Circaetinae) rather than to the Harpy and other eagles. Small captive groups of endangered birds can maintain native feather mite populations for decades despite regular antiparasitic treatment. Our study is a first record of feather mites from endemic raptors or diurnal birds-of-prey in the Philippines, with three new species described. Feather mites of the Great Philippine Eagle support the attribution of the host to the Circaetinae rather than to Harpiinae birds of prey lineages.
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19
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Hokan M, Zimmermann E, Radespiel U, Andriatsitohaina B, Rasoloharijaona S, Strube C. Are sleeping site ecology and season linked to intestinal helminth prevalence and diversity in two sympatric, nocturnal and arboreal primate hosts (Lepilemur edwardsi and Avahi occidentalis)? BMC Ecol 2018; 18:22. [PMID: 30005645 PMCID: PMC6043982 DOI: 10.1186/s12898-018-0178-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Accepted: 07/01/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Various factors, such as climate, body size and sociality are often linked to parasitism. This constrains the identification of other determinants driving parasite infections. Here, we investigate for the first time intestinal parasites in two sympatric arboreal primate species, which share similar activity patterns, feeding ecology, body size and sociality, and cope with the same climate conditions, but differ in sleeping site ecology: the Milne-Edward's sportive lemur (Lepilemur edwardsi) and the Western woolly lemur (Avahi occidentalis). Comparison of these two species aimed to test whether differences in sleeping sites are related to differences in parasite infection patterns. Additionally, gender and seasonal factors were taken into account. Animals were radio-collared to record their sleeping site dynamics and to collect fecal samples to assess intestinal parasitism during both the dry and the rainy season. RESULTS Only low parasite diversity was detected, which is attributable to the strict arboreal lifestyle of these lemurs, limiting their contact with infective parasite stages. L. edwardsi, which sleeps in tree holes and repeatedly uses the same sleeping site, excreted eggs of strongyle and oxyurid nematodes, whereby strongyles always occurred in coinfection with oxyurids. In contrast, A. occidentalis, which sleeps on open branches and frequently changes sleeping sites, only excreted eggs of strongyle nematodes. This difference can be attributed to a potential favorable environment presented by tree holes for infective stages, facilitating parasitic transmission. Additionally, Strongylida in A. occidentalis were only observed in the rainy season, suggesting an arrested development during the dry season in the nematodes' life cycle. Males and females of both lemur species showed the same frequency of parasitism. No differences in body mass of infected and non-infected individuals were observed, indicating that the animals' body condition remains unaffected by the detected gastrointestinal parasites. CONCLUSIONS The comparison of two primate hosts with a very similar lifestyle suggests an influence of the sleeping site ecology on intestinal parasites. In A. occidentalis there was a clear seasonal difference in strongyle egg excretion. These results improve our understanding of the parasite ecology in these endangered primate species, which may be critical in the light of species conservation.
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Affiliation(s)
- May Hokan
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
- Institute of Zoology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - Elke Zimmermann
- Institute of Zoology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - Ute Radespiel
- Institute of Zoology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
| | - Bertrand Andriatsitohaina
- Département de Biologie Animale et Écologie, Faculté des Science, Université de Mahajanga, 401 Mahajanga, Madagascar
| | - Solofonirina Rasoloharijaona
- Département de Biologie Animale et Écologie, Faculté des Science, Université de Mahajanga, 401 Mahajanga, Madagascar
| | - Christina Strube
- Institute for Parasitology, University of Veterinary Medicine Hannover, Buenteweg 17, 30559 Hannover, Germany
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20
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21
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Kempel A, Rindisbacher A, Fischer M, Allan E. Plant soil feedback strength in relation to large-scale plant rarity and phylogenetic relatedness. Ecology 2018; 99:597-606. [DOI: 10.1002/ecy.2145] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Revised: 12/18/2017] [Accepted: 12/20/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Anne Kempel
- Institute of Plant Sciences; Altenbergrain 21 3013 Bern Switzerland
| | | | - Markus Fischer
- Institute of Plant Sciences; Altenbergrain 21 3013 Bern Switzerland
| | - Eric Allan
- Institute of Plant Sciences; Altenbergrain 21 3013 Bern Switzerland
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22
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Faust CL, Dobson AP, Gottdenker N, Bloomfield LSP, McCallum HI, Gillespie TR, Diuk-Wasser M, Plowright RK. Null expectations for disease dynamics in shrinking habitat: dilution or amplification? Philos Trans R Soc Lond B Biol Sci 2018; 372:rstb.2016.0173. [PMID: 28438921 DOI: 10.1098/rstb.2016.0173] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/02/2016] [Indexed: 11/12/2022] Open
Abstract
As biodiversity declines with anthropogenic land-use change, it is increasingly important to understand how changing biodiversity affects infectious disease risk. The dilution effect hypothesis, which points to decreases in biodiversity as critical to an increase in infection risk, has received considerable attention due to the allure of a win-win scenario for conservation and human well-being. Yet some empirical data suggest that the dilution effect is not a generalizable phenomenon. We explore the response of pathogen transmission dynamics to changes in biodiversity that are driven by habitat loss using an allometrically scaled multi-host model. With this model, we show that declining habitat, and thus declining biodiversity, can lead to either increasing or decreasing infectious-disease risk, measured as endemic prevalence. Whether larger habitats, and thus greater biodiversity, lead to a decrease (dilution effect) or increase (amplification effect) in infection prevalence depends upon the pathogen transmission mode and how host competence scales with body size. Dilution effects were detected for most frequency-transmitted pathogens and amplification effects were detected for density-dependent pathogens. Amplification effects were also observed over a particular range of habitat loss in frequency-dependent pathogens when we assumed that host competence was greatest in large-bodied species. By contrast, only amplification effects were observed for density-dependent pathogens; host competency only affected the magnitude of the effect. These models can be used to guide future empirical studies of biodiversity-disease relationships across gradients of habitat loss. The type of transmission, the relationship between host competence and community assembly, the identity of hosts contributing to transmission, and how transmission scales with area are essential factors to consider when elucidating the mechanisms driving disease risk in shrinking habitat.This article is part of the themed issue 'Conservation, biodiversity and infectious disease: scientific evidence and policy implications'.
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Affiliation(s)
- Christina L Faust
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA .,Department of Microbiology and Immunology, Montana State University, Bozeman, MT 59717, USA
| | - Andrew P Dobson
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA
| | - Nicole Gottdenker
- Department of Veterinary Pathology, University of Georgia, Athens, GA 30602, USA
| | - Laura S P Bloomfield
- Emmett Interdisciplinary Program in Environment and Resources, Stanford University, Stanford, CA 94305, USA
| | - Hamish I McCallum
- Environmental Futures Research Institute and Griffith School of Environment, Griffith University, Brisbane, Queensland 4222, Australia
| | - Thomas R Gillespie
- Department of Environmental Sciences, Rollins School of Public Health; Program In Population, Biology, Ecology and Evolution; Emory University, Atlanta, GA 30322, USA.,Department of Environmental Health, Rollins School of Public Health; Program In Population, Biology, Ecology and Evolution; Emory University, Atlanta, GA 30322, USA
| | - Maria Diuk-Wasser
- Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, NY 10027, USA
| | - Raina K Plowright
- Department of Microbiology and Immunology, Montana State University, Bozeman, MT 59717, USA
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Thompson RA, Lymbery AJ, Godfrey SS. Parasites at Risk – Insights from an Endangered Marsupial. Trends Parasitol 2018; 34:12-22. [DOI: 10.1016/j.pt.2017.09.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2017] [Revised: 09/04/2017] [Accepted: 09/04/2017] [Indexed: 11/16/2022]
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Wecek K, Hartmann S, Paijmans JLA, Taron U, Xenikoudakis G, Cahill JA, Heintzman PD, Shapiro B, Baryshnikov G, Bunevich AN, Crees JJ, Dobosz R, Manaserian N, Okarma H, Tokarska M, Turvey ST, Wójcik JM, Zyla W, Szymura JM, Hofreiter M, Barlow A. Complex Admixture Preceded and Followed the Extinction of Wisent in the Wild. Mol Biol Evol 2017; 34:598-612. [PMID: 28007976 PMCID: PMC5356474 DOI: 10.1093/molbev/msw254] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Retracing complex population processes that precede extreme bottlenecks may be impossible using data from living individuals. The wisent (Bison bonasus), Europe’s largest terrestrial mammal, exemplifies such a population history, having gone extinct in the wild but subsequently restored by captive breeding efforts. Using low coverage genomic data from modern and historical individuals, we investigate population processes occurring before and after this extinction. Analysis of aligned genomes supports the division of wisent into two previously recognized subspecies, but almost half of the genomic alignment contradicts this population history as a result of incomplete lineage sorting and admixture. Admixture between subspecies populations occurred prior to extinction and subsequently during the captive breeding program. Admixture with the Bos cattle lineage is also widespread but results from ancient events rather than recent hybridization with domestics. Our study demonstrates the huge potential of historical genomes for both studying evolutionary histories and for guiding conservation strategies.
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Affiliation(s)
- Karolina Wecek
- Department of Comparative Anatomy, Institute of Zoology, Jagiellonian University, Kraków, Poland.,Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Stefanie Hartmann
- Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | | | - Ulrike Taron
- Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | | | - James A Cahill
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA
| | - Peter D Heintzman
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA
| | - Beth Shapiro
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA.,University of California Santa Cruz Genomics Institute, University of California, Santa Cruz, CA
| | - Gennady Baryshnikov
- Laboratory of Theriology, Zoological Institute of the Russian Academy of Sciences, Petersberg, Russia
| | | | - Jennifer J Crees
- Zoological Society of London, Institute of Zoology, Regent's Park, London, United Kingdom
| | - Roland Dobosz
- Upper Silesian Museum, Bytom, Poland.,Department of Zoology, Faculty of Biology and Environmental Protection, University of Silesia, Katowice, Poland
| | - Ninna Manaserian
- Institute of Zoology Armenian National Academy of Sciences, Yerevan, Armenia
| | - Henryk Okarma
- Institute of Nature Conservation Polish Academy of Sciences, Kraków, Poland
| | | | - Samuel T Turvey
- Zoological Society of London, Institute of Zoology, Regent's Park, London, United Kingdom
| | - Jan M Wójcik
- Mammal Research Institute Polish Academy of Sciences, Bialowieza, Poland
| | | | - Jacek M Szymura
- Department of Comparative Anatomy, Institute of Zoology, Jagiellonian University, Kraków, Poland
| | - Michael Hofreiter
- Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - Axel Barlow
- Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
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25
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Evans JK, Buchanan KL, Griffith SC, Klasing KC, Addison B. Ecoimmunology and microbial ecology: Contributions to avian behavior, physiology, and life history. Horm Behav 2017; 88:112-121. [PMID: 28065710 DOI: 10.1016/j.yhbeh.2016.12.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Revised: 11/29/2016] [Accepted: 12/05/2016] [Indexed: 12/21/2022]
Abstract
Bacteria have had a fundamental impact on vertebrate evolution not only by affecting the evolution of the immune system, but also generating complex interactions with behavior and physiology. Advances in molecular techniques have started to reveal the intricate ways in which bacteria and vertebrates have coevolved. Here, we focus on birds as an example system for understanding the fundamental impact bacteria have had on the evolution of avian immune defenses, behavior, physiology, reproduction and life histories. The avian egg has multiple characteristics that have evolved to enable effective defense against pathogenic attack. Microbial risk of pathogenic infection is hypothesized to vary with life stage, with early life risk being maximal at either hatching or fledging. For adult birds, microbial infection risk is also proposed to vary with habitat and life stage, with molt inducing a period of increased vulnerability. Bacteria not only play an important role in shaping the immune system as well as trade-offs with other physiological systems, but also for determining digestive efficiency and nutrient uptake. The relevance of avian microbiomes for avian ecology, physiology and behavior is highly topical and will likely impact on our understanding of avian welfare, conservation, captive breeding as well as for our understanding of the nature of host-microbe coevolution.
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Affiliation(s)
- Jessica K Evans
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds, Geelong 3220, Victoria, Australia; Department of Biological Sciences, Macquarie University, 2122, New South Wales, Australia
| | - Katherine L Buchanan
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds, Geelong 3220, Victoria, Australia
| | - Simon C Griffith
- Department of Biological Sciences, Macquarie University, 2122, New South Wales, Australia
| | - Kirk C Klasing
- Department of Animal Science, University of California, 1 Shields Avenue, Davis, CA 95616, USA
| | - BriAnne Addison
- School of Life and Environmental Sciences, Deakin University, Waurn Ponds, Geelong 3220, Victoria, Australia.
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Salzer JS, Pinto CM, Grippi DC, Williams-Newkirk AJ, Peterhans JK, Rwego IB, Carroll DS, Gillespie TR. Impact of Anthropogenic Disturbance on Native and Invasive Trypanosomes of Rodents in Forested Uganda. Ecohealth 2016; 13:698-707. [PMID: 27655649 DOI: 10.1007/s10393-016-1160-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Revised: 08/10/2016] [Accepted: 08/11/2016] [Indexed: 06/06/2023]
Abstract
Habitat disturbance and anthropogenic change are globally associated with extinctions and invasive species introductions. Less understood is the impact of environmental change on the parasites harbored by endangered, extinct, and introduced species. To improve our understanding of the impacts of anthropogenic disturbance on such host-parasite interactions, we investigated an invasive trypanosome (Trypanosoma lewisi). We screened 348 individual small mammals, representing 26 species, from both forested and non-forested habitats in rural Uganda. Using microscopy and PCR, we identified 18% of individuals (order Rodentia) as positive for trypanosomes. Further phylogenetic analyses revealed two trypanosomes circulating-T. lewisi and T. varani. T. lewisi was found in seven species both native and invasive, while T. varani was identified in only three native forest species. The lack of T. varani in non-forested habitats suggests that it is a natural parasite of forest-dwelling rodents. Our findings suggest that anthropogenic disturbance may lead to spillover of an invasive parasite (T. lewisi) from non-native to native species, and lead to local co-extinction of a native parasite (T. varani) and native forest-dwelling hosts.
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Affiliation(s)
- Johanna S Salzer
- Program in Population Biology, Ecology, and Evolution, Emory University, 400 Dowman Dr., Math and Science Center 5th Floor, Atlanta, GA, 30322, USA
- Department of Environmental Sciences, Emory University, Atlanta, GA, 30322, USA
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA
| | - C Miguel Pinto
- Department of Mammalogy and Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, NY, 10024, USA
- Instituto de Ciencias Biológicas, Escuela Politécnica Nacional, PO Box 17-01-2759, Quito, Ecuador
| | - Dylan C Grippi
- Program in Population Biology, Ecology, and Evolution, Emory University, 400 Dowman Dr., Math and Science Center 5th Floor, Atlanta, GA, 30322, USA
| | - Amanda Jo Williams-Newkirk
- Program in Population Biology, Ecology, and Evolution, Emory University, 400 Dowman Dr., Math and Science Center 5th Floor, Atlanta, GA, 30322, USA
- Department of Environmental Sciences, Emory University, Atlanta, GA, 30322, USA
- Rickettsial Zoonoses Branch, Division of Vector-borne Diseases, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA
| | - Julian Kerbis Peterhans
- College of Professional Studies, Roosevelt University, Chicago, IL, 60605, USA
- Division of Mammals, Field Museum of Natural History, Chicago, IL, 60605, USA
| | - Innocent B Rwego
- Department of Environmental Sciences, Emory University, Atlanta, GA, 30322, USA
- Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, 30322, USA
- Department of Biological Sciences, Makerere University, Kampala, Uganda
| | - Darin S Carroll
- Department of Environmental Sciences, Emory University, Atlanta, GA, 30322, USA
- Poxvirus and Rabies Branch, Division of High-Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA
| | - Thomas R Gillespie
- Program in Population Biology, Ecology, and Evolution, Emory University, 400 Dowman Dr., Math and Science Center 5th Floor, Atlanta, GA, 30322, USA.
- Department of Environmental Sciences, Emory University, Atlanta, GA, 30322, USA.
- Department of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, GA, 30322, USA.
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Ripple WJ, Abernethy K, Betts MG, Chapron G, Dirzo R, Galetti M, Levi T, Lindsey PA, Macdonald DW, Machovina B, Newsome TM, Peres CA, Wallach AD, Wolf C, Young H. Bushmeat hunting and extinction risk to the world's mammals. R Soc Open Sci 2016; 3:160498. [PMID: 27853564 PMCID: PMC5098989 DOI: 10.1098/rsos.160498] [Citation(s) in RCA: 196] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2016] [Accepted: 09/20/2016] [Indexed: 05/04/2023]
Abstract
Terrestrial mammals are experiencing a massive collapse in their population sizes and geographical ranges around the world, but many of the drivers, patterns and consequences of this decline remain poorly understood. Here we provide an analysis showing that bushmeat hunting for mostly food and medicinal products is driving a global crisis whereby 301 terrestrial mammal species are threatened with extinction. Nearly all of these threatened species occur in developing countries where major coexisting threats include deforestation, agricultural expansion, human encroachment and competition with livestock. The unrelenting decline of mammals suggests many vital ecological and socio-economic services that these species provide will be lost, potentially changing ecosystems irrevocably. We discuss options and current obstacles to achieving effective conservation, alongside consequences of failure to stem such anthropogenic mammalian extirpation. We propose a multi-pronged conservation strategy to help save threatened mammals from immediate extinction and avoid a collapse of food security for hundreds of millions of people.
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Affiliation(s)
- William J. Ripple
- GlobalTrophic Cascades Program, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
- Forest Biodiversity Research Network, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
| | - Katharine Abernethy
- School of Natural Sciences, University of Stirling, Stirling FK9 4LA, UK
- Institut de Recherche en Ecologie Tropicale, CENAREST, BP 842 Libreville, Gabon
| | - Matthew G. Betts
- GlobalTrophic Cascades Program, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
- Forest Biodiversity Research Network, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
| | - Guillaume Chapron
- Grimsö Wildlife Research Station, Department of Ecology, Swedish University of Agricultural Sciences, 73091 Riddarhyttan, Sweden
| | - Rodolfo Dirzo
- Department of Biology, Stanford University, Stanford, CA 94305, USA
| | - Mauro Galetti
- Universidade Estadual Paulista (UNESP), Instituto Biociências, Departamento de Ecologia, 13506-900 Rio Claro, São Paulo, Brazil
- Department of Bioscience, Ecoinformatics and Biodiversity, Aarhus University, 8000 Aarhus, Denmark
| | - Taal Levi
- GlobalTrophic Cascades Program, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
- Forest Biodiversity Research Network, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
- Department of Fisheries and Wildlife, Oregon State University, Corvallis, OR 97331, USA
| | - Peter A. Lindsey
- Panthera, 8 West 40th Street, 18th Floor, New York, NY 10018, USA
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Pretoria, Gauteng, South Africa
| | - David W. Macdonald
- Wildlife Conservation Research Unit, Department of Zoology, University of Oxford, The Recanati-Kaplan Centre, Tubney House, Tubney, Abingdon OX13 5QL, UK
| | - Brian Machovina
- Department of Biological Sciences, Florida International University, Miami, FL 33199, USA
| | - Thomas M. Newsome
- GlobalTrophic Cascades Program, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
- School of Life and Environmental Sciences, Centre for Integrative Ecology, Deakin University, Burwood campus, Geelong, Victoria 3125, Australia
- School of Life and Environmental Sciences, The University of Sydney, New South Wales 2006, Australia
- School of Environmental and Forest Sciences, University of Washington, Seattle, WA 98195, USA
| | - Carlos A. Peres
- School of Environmental Sciences, University of East Anglia, Norwich NR4 7TJ, UK
| | - Arian D. Wallach
- Centre for Compassionate Conservation, School of Life Sciences, University of Technology Sydney, PO Box 123 Broadway, New South Wales 2007, Australia
| | - Christopher Wolf
- GlobalTrophic Cascades Program, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
- Forest Biodiversity Research Network, Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331, USA
| | - Hillary Young
- Department of Ecology and Evolutionary Biology, University of California Santa Barbara, Santa Barbara, CA 93106, USA
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Peev S, Zehtindjiev P, Ilieva M, Träff J, Briedis M, Adamík P. Haemosporidian blood parasite diversity and prevalence in the semi-collared flycatcher (Ficedula semitorquata) from the eastern Balkans. Parasitol Int 2016; 65:613-617. [PMID: 27641106 DOI: 10.1016/j.parint.2016.09.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Revised: 09/13/2016] [Accepted: 09/14/2016] [Indexed: 12/16/2022]
Abstract
We present the first survey on prevalence and diversity of haemosporidian parasites of the genera Plasmodium and Haemoproteus in a poorly studied migratory passerine, the semi-collared flycatcher (Ficedula semitorquata). In total, 110 individuals were sampled during two breeding seasons in Eastern Bulgaria. We collected both blood samples for PCR identification and blood films for microscopic identification of haemosporidians. We found six distinctive parasite cyt b lineages present in the blood of the semi-collared flycatcher (three Haemoproteus and three Plasmodium). Two of the lineages, i.e. pWW3 of Plasmodium sp. and hCCF2 of Haemoproteus sp., are recorded for the first time in the family Muscicapidae. The overall prevalence ranged between 12.2 and 15.9% and we did not find co-infections. We hypothesize that the low prevalence of haemosporidians in this species might be linked to its small population size and relatively restricted geographical range.
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Affiliation(s)
- Strahil Peev
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Street, 1113 Sofia, Bulgaria.
| | - Pavel Zehtindjiev
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Street, 1113 Sofia, Bulgaria
| | - Mihaela Ilieva
- Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Street, 1113 Sofia, Bulgaria
| | - Johan Träff
- Grötlingbo Smiss 516, SE-62338 Havdhem, Sweden
| | - Martins Briedis
- Department of Zoology, Faculty of Science, Palacký University, tř. 17. listopadu 50, CZ-77146, Czech Republic
| | - Peter Adamík
- Department of Zoology, Faculty of Science, Palacký University, tř. 17. listopadu 50, CZ-77146, Czech Republic; Museum of Natural History, nám. Republiky 5, CZ-77173 Olomouc, Czech Republic
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Chapman CA, Friant S, Godfrey K, Liu C, Sakar D, Schoof VAM, Sengupta R, Twinomugisha D, Valenta K, Goldberg TL. Social Behaviours and Networks of Vervet Monkeys Are Influenced by Gastrointestinal Parasites. PLoS One 2016; 11:e0161113. [PMID: 27580121 PMCID: PMC5007011 DOI: 10.1371/journal.pone.0161113] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2016] [Accepted: 07/29/2016] [Indexed: 11/19/2022] Open
Abstract
Substantial research has shown that while some parasite infections can be fatal to hosts, most infections are sub-clinical and non-lethal. Such sub-clinical infections can nonetheless have negative consequences for the long-term fitness of the host such as reducing juvenile growth and the host's ability to compete for food and mates. With such effects, infected individuals are expected to exhibit behavioural changes. Here we use a parasite removal experiment to quantify how gastrointestinal parasite infections affect the behaviour of vervet monkeys (Chlorocebus aethiops) at Lake Nabugabo, Uganda. Behavioural profiles and the structure of nearest neighbour relationships varied significantly. As predicted, after deworming the duration of the resting events decreased, which is consistent with the idea that parasite infections are energetically costly. In contrast to what was predicted, we could not reject the null hypothesis and we observed no change in either the frequency or duration of grooming, but we found that the duration of travel events increased. A network analysis revealed that after deworming, individuals tended to have more nearest neighbours and hence probably more frequent interactions, with this effect being particularly marked for juveniles. The heightened response by juveniles may indicate that they are avoiding infected individuals more than other age classes because it is too costly to move energy away from growth. We consider that populations with high parasite burden may have difficulties developing social networks and behaviours that could have cascading effects that impact the population in general.
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Affiliation(s)
- Colin A. Chapman
- McGill School of Environment and Department of Anthropology, McGill University, Montreal, Quebec, Canada, H3A 2T7
- Wildlife Conservation Society, Bronx, New York, 10460, United States of America
- Makerere University Biological Field Station, P.O. Box 967, Fort Portal, Uganda
| | - Sagan Friant
- Nelson Institute for Environmental Studies, University of Wisconsin—Madison, Madison, WI, 53715, United States of America
| | - Kathleen Godfrey
- Department of Anthropology, McGill University, Montreal, Quebec, Canada, H3A 1B1
| | - Cynthia Liu
- Department of Biology, McGill University, Montreal, Quebec, Canada, H3A 1B1
| | - Dipto Sakar
- Department of Geography, McGill University, Montreal, Quebec, H3A 2T7, Canada
| | - Valérie A. M. Schoof
- Bilingual Biology Program, Department of Multidisciplinary Studies, Glendon Campus, York University, Toronto, Ontario, M3J 1P3, Canada
| | - Raja Sengupta
- Department of Geography, McGill University, Montreal, Quebec, H3A 2T7, Canada
| | - Dennis Twinomugisha
- Makerere University Biological Field Station, P.O. Box 967, Fort Portal, Uganda
| | - Kim Valenta
- McGill School of Environment and Department of Anthropology, McGill University, Montreal, Quebec, Canada, H3A 2T7
| | - Tony L. Goldberg
- Makerere University Biological Field Station, P.O. Box 967, Fort Portal, Uganda
- Nelson Institute for Environmental Studies, University of Wisconsin—Madison, Madison, WI, 53715, United States of America
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI, 53706, United States of America
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30
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Biedrzycka A, Kloch A. Development of novel associations between MHC alleles and susceptibility to parasitic infections in an isolated population of an endangered mammal. Infect Genet Evol 2016; 44:210-217. [PMID: 27423515 DOI: 10.1016/j.meegid.2016.07.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 07/11/2016] [Accepted: 07/12/2016] [Indexed: 10/21/2022]
Abstract
The role of pathogens in dynamics of endangered species is not fully understood, and the effect of infection often interacts with other processes affecting those species, such as fragmentation and isolation or loss of genetic variation. Small, isolated populations are prone to losing functional alleles due to demographic processes and genetic drift, which may diminish their ability to resist infection if immune genes are affected. Demographic processes may also alter the selective pressure exerted by a parasite, as they influence the rate of parasite transmission between individuals. In the present paper we studied changes in parasite infection levels and genetic variability in an isolated population of spotted suslik (Spermophillus suslicus). Over a three-year period (approx. three generations), when the population size remained relatively stable, we observed a considerable increase in parasite prevalence and infection intensity, followed by the development of novel associations between MHC DRB alleles and parasite burden. Contrary to expectations, the change in MHC allele frequency over time was not consistent with the effect of the allele - for instance, Spsu-DRB*07, associated with higher intensity of infection with a nematode Capillaria sp., increased in frequency from 11.8 to 20.2%. Yet, we found no signatures of selection in the studied loci. Our results show that an isolated, stable population may experience a sudden increase in parasitic infections, resulting in a development of novel associations between MHC alleles and parasite susceptibility/resistance, even though no signatures of selection can be found.
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Affiliation(s)
- Aleksandra Biedrzycka
- Institute of Nature Conservation, Polish Academy of Sciences, al. A. Mickiewicza 33, 31-120 Kraków, Poland.
| | - Agnieszka Kloch
- Department of Ecology, Biological and Chemical Research Centre, Faculty of Biology, University of Warsaw, ul. Żwirki i Wigury 101, 02-089 Warszawa, Poland.
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31
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Stephens PR, Altizer S, Smith KF, Alonso Aguirre A, Brown JH, Budischak SA, Byers JE, Dallas TA, Jonathan Davies T, Drake JM, Ezenwa VO, Farrell MJ, Gittleman JL, Han BA, Huang S, Hutchinson RA, Johnson P, Nunn CL, Onstad D, Park A, Vazquez-Prokopec GM, Schmidt JP, Poulin R. The macroecology of infectious diseases: a new perspective on global-scale drivers of pathogen distributions and impacts. Ecol Lett 2016; 19:1159-71. [PMID: 27353433 DOI: 10.1111/ele.12644] [Citation(s) in RCA: 110] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2016] [Revised: 04/12/2016] [Accepted: 05/31/2016] [Indexed: 01/26/2023]
Abstract
Identifying drivers of infectious disease patterns and impacts at the broadest scales of organisation is one of the most crucial challenges for modern science, yet answers to many fundamental questions remain elusive. These include what factors commonly facilitate transmission of pathogens to novel host species, what drives variation in immune investment among host species, and more generally what drives global patterns of parasite diversity and distribution? Here we consider how the perspectives and tools of macroecology, a field that investigates patterns and processes at broad spatial, temporal and taxonomic scales, are expanding scientific understanding of global infectious disease ecology. In particular, emerging approaches are providing new insights about scaling properties across all living taxa, and new strategies for mapping pathogen biodiversity and infection risk. Ultimately, macroecology is establishing a framework to more accurately predict global patterns of infectious disease distribution and emergence.
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Affiliation(s)
| | - Sonia Altizer
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Katherine F Smith
- Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 0291, USA
| | - A Alonso Aguirre
- Department of Environmental Science and Policy, George Mason University, Fairfax, VA, 22030, USA
| | - James H Brown
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Sarah A Budischak
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - James E Byers
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Tad A Dallas
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - T Jonathan Davies
- Department of Biology, McGill University, Montreal, Quebec, H3A 0G4, Canada
| | - John M Drake
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Vanessa O Ezenwa
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Maxwell J Farrell
- Department of Biology, McGill University, Montreal, Quebec, H3A 0G4, Canada
| | - John L Gittleman
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Barbara A Han
- Cary Institute of Ecosystem Studies, Millbrook, New York, 12545, USA
| | - Shan Huang
- Senckenberg Biodiversity and Climate Research Centre (BiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt, Germany
| | - Rebecca A Hutchinson
- School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR, 97331, USA
| | - Pieter Johnson
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA
| | - Charles L Nunn
- Biological Sciences, Duke University, Durham, NC, 27708, USA
| | - David Onstad
- ITD Data Analysis and Modelling, DuPont Agricultural Biotechnology, Experimental Station E353/317, Wilmington, DE, 19803, USA
| | - Andrew Park
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | | | - John P Schmidt
- Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Robert Poulin
- Department of Zoology, University of Otago, Dunedin, 9054, New Zealand
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32
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Chapman CA, Schoof VAM, Bonnell TR, Gogarten JF, Calmé S. Competing pressures on populations: long-term dynamics of food availability, food quality, disease, stress and animal abundance. Philos Trans R Soc Lond B Biol Sci 2016; 370:rstb.2014.0112. [PMID: 25870398 DOI: 10.1098/rstb.2014.0112] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Despite strong links between sociality and fitness that ultimately affect the size of animal populations, the particular social and ecological factors that lead to endangerment are not well understood. Here, we synthesize approximately 25 years of data and present new analyses that highlight dynamics in forest composition, food availability, the nutritional quality of food, disease, physiological stress and population size of endangered folivorous red colobus monkeys (Procolobus rufomitratus). There is a decline in the quality of leaves 15 and 30 years following two previous studies in an undisturbed area of forest. The consumption of a low-quality diet in one month was associated with higher glucocorticoid levels in the subsequent month and stress levels in groups living in degraded forest fragments where diet was poor was more than twice those in forest groups. In contrast, forest composition has changed and when red colobus food availability was weighted by the protein-to-fibre ratio, which we have shown positively predicts folivore biomass, there was an increase in the availability of high-quality trees. Despite these changing social and ecological factors, the abundance of red colobus has remained stable, possibly through a combination of increasing group size and behavioural flexibility.
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Affiliation(s)
- Colin A Chapman
- McGill School of Environment, McGill University, Montreal, Quebec, Canada H3A 2T7 Department of Anthropology, McGill University, Montreal, Quebec, Canada H3A 2T7 Wildlife Conservation Society, Bronx, NY 10460, USA
| | - Valérie A M Schoof
- Department of Anthropology, McGill University, Montreal, Quebec, Canada H3A 2T7
| | - Tyler R Bonnell
- Department of Psychology, University Hall, University of Lethbridge, Lethbridge, Alberta, Canada T1K 3M4
| | - Jan F Gogarten
- Department of Biology, McGill University, Montreal, Quebec, Canada H3A 1B1 Department of Primatology, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany Research group Epidemiology of Highly Pathogenic Microorganisms, Robert Koch Institute, 13353 Berlin, Germany
| | - Sophie Calmé
- Département de Biologie, Université de Sherbrooke, Sherbrooke, Quebec, Canada J1K 2R1 Departamento de Conservacion de la Biodiversidad, El Colegio de la Frontera Sur, Chetumal, Mexico
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Farrell MJ, Stephens PR, Davies TJ. Response to Strona & Fattorini: are generalist parasites being lost from their hosts? J Anim Ecol 2016; 85:624-7. [PMID: 26751600 DOI: 10.1111/1365-2656.12470] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2015] [Accepted: 10/30/2015] [Indexed: 02/06/2023]
Abstract
We respond to criticism of our recent paper by examining assumptions about the structure of host-parasite networks, and discuss the implications of host extinction on our perception of parasite specificity.
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Affiliation(s)
- Maxwell J Farrell
- Biology Department, McGill University, 1205 Docteur Penfield, Montreal, QC, H3A 1B1, Canada
| | | | - T Jonathan Davies
- Biology Department, McGill University, 1205 Docteur Penfield, Montreal, QC, H3A 1B1, Canada.,African Centre for DNA Barcoding, University of Johannesburg, PO Box 524, Auckland Park, 2006, Johannesburg, South Africa
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34
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Strona G. Past, present and future of host-parasite co-extinctions. Int J Parasitol Parasites Wildl 2015; 4:431-41. [PMID: 26835251 PMCID: PMC4699984 DOI: 10.1016/j.ijppaw.2015.08.007] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2015] [Revised: 08/25/2015] [Accepted: 08/26/2015] [Indexed: 12/21/2022]
Abstract
Human induced ecosystem alterations and climate change are expected to drive several species to extinction. In this context, the attention of public opinion, and hence conservationists' efforts, are often targeted towards species having emotional, recreational and/or economical value. This tendency may result in a high number of extinctions happening unnoticed. Among these, many could involve parasites. Several studies have highlighted various reasons why we should care about this, that go far beyond the fact that parasites are amazingly diverse. A growing corpus of evidence suggests that parasites contribute much to ecosystems both in terms of biomass and services, and the seemingly paradoxical idea that a healthy ecosystem is one rich in parasites is becoming key to the whole concept of parasite conservation. Although various articles have covered different aspects of host-parasite co-extinctions, I feel that some important conceptual issues still need to be formally addressed. In this review, I will attempt at clarifying some of them, with the aim of providing researchers with a unifying conceptual framework that could help them designing future studies. In doing this, I will try to draw a more clear distinction between the (co-)evolutionary and the ecological dimensions of co-extinction studies, since the ongoing processes that are putting parasites at risk now operate at a scale that is extremely different from the one that has shaped host-parasite networks throughout million years of co-evolution. Moreover, I will emphasize how the complexity of direct and indirect effects of parasites on ecosystems makes it much challenging to identify the mechanisms possibly leading to co-extinction events, and to predict how such events will affect ecosystems in the long run.
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35
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Suhonen J, Rannikko J, Sorvari J. The Rarity of Host Species Affects the Co-Extinction Risk in Socially Parasitic BumblebeeBombus(Psithyrus) Species. ANN ZOOL FENN 2015. [DOI: 10.5735/086.052.0402] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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36
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Weinstein SB, Lafferty KD. How do humans affect wildlife nematodes? Trends Parasitol 2015; 31:222-7. [DOI: 10.1016/j.pt.2015.01.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2014] [Revised: 12/14/2014] [Accepted: 01/16/2015] [Indexed: 11/30/2022]
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Neto JM, Pérez-Rodríguez A, Haase M, Flade M, Bensch S. Prevalence and diversity of Plasmodium and Haemoproteus parasites in the globally-threatened Aquatic Warbler Acrocephalus paludicola. Parasitology 2015; 142:1183-9. [PMID: 25924680 DOI: 10.1017/S0031182015000414] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
The diversity and prevalence of malaria parasites of the genera Plasmodium and Haemoproteus were determined in the globally-threatened Aquatic Warbler Acrocephalus paludicola. Birds were sampled during migration in Portugal and at the wintering quarters in Senegal and parasites were detected using molecular methods. Only three generalist parasite lineages (Plasmodium) were found. There were no significant differences in the prevalence of parasites between sexes in Europe, but adults had higher prevalence than first-year birds, and birds in Europe had higher prevalence than those captured in Africa. When comparing with other Acrocephalus species and taking sample size into account, Aquatic Warblers had the lowest prevalence and, together with another threatened species, the Seychelles Warbler Acrocephalus sechellensis, the lowest diversity of malaria parasites. We hypothesize that the low diversity of parasites and absence of specialist lineages of Aquatic Warblers are caused by its small population size and fragmented distribution. Furthermore, Aquatic Warblers' extreme habitat specialization may decrease their exposure to malaria parasites, but other explanations such as high mortality (which would constraint the sampling of infected birds) or, in contrast, very efficient immunological system in clearing the infections cannot be ruled out. This study contributes to explain variation in prevalence and diversity of malaria parasites among hosts.
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Farrell MJ, Stephens PR, Berrang-Ford L, Gittleman JL, Davies TJ. The path to host extinction can lead to loss of generalist parasites. J Anim Ecol 2015; 84:978-84. [DOI: 10.1111/1365-2656.12342] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Accepted: 01/12/2015] [Indexed: 12/29/2022]
Affiliation(s)
- Maxwell J. Farrell
- Biology Department; McGill University; 1205 Docteur Penfield Montreal QC H3A 1B1 Canada
| | | | - Lea Berrang-Ford
- Geography Department; McGill University; 805 Sherbrooke Street O. Montreal QC H3A 0B9 Canada
| | | | - T. Jonathan Davies
- Biology Department; McGill University; 1205 Docteur Penfield Montreal QC H3A 1B1 Canada
- African Centre for DNA Barcoding; University of Johannesburg; PO Box 524 Auckland Park 2006 Johannesburg South Africa
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Pechouskova E, Dammhahn M, Brameier M, Fichtel C, Kappeler PM, Huchard E. MHC class II variation in a rare and ecological specialist mouse lemur reveals lower allelic richness and contrasting selection patterns compared to a generalist and widespread sympatric congener. Immunogenetics 2015; 67:229-45. [PMID: 25687337 PMCID: PMC4357647 DOI: 10.1007/s00251-015-0827-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2014] [Accepted: 01/30/2015] [Indexed: 11/20/2022]
Abstract
The polymorphism of immunogenes of the major histocompatibility complex (MHC) is thought to influence the functional plasticity of immune responses and, consequently, the fitness of populations facing heterogeneous pathogenic pressures. Here, we evaluated MHC variation (allelic richness and divergence) and patterns of selection acting on the two highly polymorphic MHC class II loci (DRB and DQB) in the endangered primate Madame Berthe’s mouse lemur (Microcebus berthae). Using 454 pyrosequencing, we examined MHC variation in a total of 100 individuals sampled over 9 years in Kirindy Forest, Western Madagascar, and compared our findings with data obtained previously for its sympatric congener, the grey mouse lemur (Microcebus murinus). These species exhibit a contrasting ecology and demography that were expected to affect MHC variation and molecular signatures of selection. We found a lower allelic richness concordant with its low population density, but a similar level of allelic divergence and signals of historical selection in the rare feeding specialist M. berthae compared to the widespread generalist M. murinus. These findings suggest that demographic factors may exert a stronger influence than pathogen-driven selection on current levels of allelic richness in M. berthae. Despite a high sequence similarity between the two congeners, contrasting selection patterns detected at DQB suggest its potential functional divergence. This study represents a first step toward unravelling factors influencing the adaptive divergence of MHC genes between closely related but ecologically differentiated sympatric lemurs and opens new questions regarding potential functional discrepancy that would explain contrasting selection patterns detected at DQB.
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Affiliation(s)
- Eva Pechouskova
- Behavioral Ecology and Sociobiology Unit, German Primate Center, Kellnerweg 4, Göttingen, Germany,
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Kouassi RYW, McGraw SW, Yao PK, Abou-Bacar A, Brunet J, Pesson B, Bonfoh B, N’goran EK, Candolfi E. Diversity and prevalence of gastrointestinal parasites in seven non-human primates of the Taï National Park, Côte d'Ivoire. Parasite 2015; 22:1. [PMID: 25619957 PMCID: PMC4306024 DOI: 10.1051/parasite/2015001] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 01/14/2015] [Indexed: 11/14/2022] Open
Abstract
Parasites and infectious diseases are well-known threats to primate populations. The main objective of this study was to provide baseline data on fecal parasites in the cercopithecid monkeys inhabiting Côte d'Ivoire's Taï National Park. Seven of eight cercopithecid species present in the park were sampled: Cercopithecus diana, Cercopithecus campbelli, Cercopithecus petaurista, Procolobus badius, Procolobus verus, Colobus polykomos, and Cercocebus atys. We collected 3142 monkey stool samples between November 2009 and December 2010. Stool samples were processed by direct wet mount examination, formalin-ethyl acetate concentration, and MIF (merthiolate, iodine, formalin) concentration methods. Slides were examined under microscope and parasite identification was based on the morphology of cysts, eggs, and adult worms. A total of 23 species of parasites was recovered including 9 protozoa (Entamoeba coli, Entamoeba histolytica/dispar, Entamoeba hartmanni, Endolimax nana, Iodamoeba butschlii, Chilomastix mesnili, Giardia sp., Balantidium coli, and Blastocystis sp.), 13 nematodes (Oesophagostomum sp., Ancylostoma sp., Anatrichosoma sp., Capillariidae Gen. sp. 1, Capillariidae Gen. sp. 2, Chitwoodspirura sp., Subulura sp., spirurids [cf Protospirura muricola], Ternidens sp., Strongyloides sp., Trichostrongylus sp., and Trichuris sp.), and 1 trematode (Dicrocoelium sp.). Diversity indices and parasite richness were high for all monkey taxa, but C. diana, C. petaurista, C. atys, and C. campbelli exhibited a greater diversity of parasite species and a more equitable distribution. The parasitological data reported are the first available for these cercopithecid species within Taï National Park.
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Affiliation(s)
- Roland Yao Wa Kouassi
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Unité de Formation et de Recherche Biosciences, Université Félix Houphouët Boigny 22 BP 770 Abidjan 22 Côte d’Ivoire
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Centre Suisse de Recherches Scientifiques en Côte d’Ivoire 01 BP 1303 Abidjan 01 Côte d’Ivoire
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Laboratoire de Parasitologie et de Mycologie Médicale, Plateau Technique de Microbiologie, Hôpitaux Universitaires de Strasbourg 1 rue Koeberlé 67000
Strasbourg France
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Institut de Parasitologie et de Pathologie Tropicale, EA 7292, Fédération de Médecine Translationnelle, Université de Strasbourg 3 rue Koeberlé 67000
Strasbourg France
| | - Scott William McGraw
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Department of Anthropology, Ohio State University, 4064 Smith Laboratory 174 West 18th Avenue Columbus Ohio
43210 USA
| | - Patrick Kouassi Yao
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Unité de Formation et de Recherche Biosciences, Université Félix Houphouët Boigny 22 BP 770 Abidjan 22 Côte d’Ivoire
| | - Ahmed Abou-Bacar
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Laboratoire de Parasitologie et de Mycologie Médicale, Plateau Technique de Microbiologie, Hôpitaux Universitaires de Strasbourg 1 rue Koeberlé 67000
Strasbourg France
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Institut de Parasitologie et de Pathologie Tropicale, EA 7292, Fédération de Médecine Translationnelle, Université de Strasbourg 3 rue Koeberlé 67000
Strasbourg France
| | - Julie Brunet
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Laboratoire de Parasitologie et de Mycologie Médicale, Plateau Technique de Microbiologie, Hôpitaux Universitaires de Strasbourg 1 rue Koeberlé 67000
Strasbourg France
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Laboratoire de Parasitologie, Faculté de Pharmacie, Université de Strasbourg 74 route du Rhin 67401
Illkirch cedex France
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Institut de Parasitologie et de Pathologie Tropicale, EA 7292, Fédération de Médecine Translationnelle, Université de Strasbourg 3 rue Koeberlé 67000
Strasbourg France
| | - Bernard Pesson
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Laboratoire de Parasitologie et de Mycologie Médicale, Plateau Technique de Microbiologie, Hôpitaux Universitaires de Strasbourg 1 rue Koeberlé 67000
Strasbourg France
| | - Bassirou Bonfoh
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Centre Suisse de Recherches Scientifiques en Côte d’Ivoire 01 BP 1303 Abidjan 01 Côte d’Ivoire
| | - Eliezer Kouakou N’goran
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Unité de Formation et de Recherche Biosciences, Université Félix Houphouët Boigny 22 BP 770 Abidjan 22 Côte d’Ivoire
| | - Ermanno Candolfi
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Laboratoire de Parasitologie et de Mycologie Médicale, Plateau Technique de Microbiologie, Hôpitaux Universitaires de Strasbourg 1 rue Koeberlé 67000
Strasbourg France
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Institut de Parasitologie et de Pathologie Tropicale, EA 7292, Fédération de Médecine Translationnelle, Université de Strasbourg 3 rue Koeberlé 67000
Strasbourg France
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Zhang L, Wu Q, Hu Y, Wu H, Wei F. Major histocompatibility complex alleles associated with parasite susceptibility in wild giant pandas. Heredity (Edinb) 2015; 114:85-93. [PMID: 25248466 DOI: 10.1038/hdy.2014.73] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Revised: 06/20/2014] [Accepted: 06/23/2014] [Indexed: 02/03/2023] Open
Abstract
Major histocompatibility complex (MHC) polymorphism is thought to be driven by antagonistic coevolution between pathogens and hosts, mediated through either overdominance or frequency-dependent selection. However, investigations under natural conditions are still rare for endangered mammals which often exhibit depleted variation, and the mechanism of selection underlying the maintenance of characteristics remains a considerable debate. In this study, 87 wild giant pandas were used to investigate MHC variation associated with parasite load. With the knowledge of the MHC profile provided by the genomic data of the giant panda, seven DRB1, seven DQA1 and eight DQA2 alleles were identified at each single locus. Positive selection evidenced by a significantly higher number of non-synonymous substitutions per non-synonymous codon site relative to synonymous substitutions per synonymous codon site could only be detected at the DRB1 locus, which leads to the speculation that DRB1 may have a more important role in dealing with parasite infection for pandas. Coprological analyses revealed that 55.17% of individuals exhibited infection with 1-2 helminthes and 95.3% of infected pandas carried Baylisascaris shroederi. Using a generalized linear model, we found that Aime-DRB1*10 was significantly associated with parasite infection, but no resistant alleles could be detected. MHC heterozygosity of the pandas was found to be uncorrelated with the infection status or the infection intensity. These results suggested that the possible selection mechanisms in extant wild pandas may be frequency dependent rather than being determined by overdominance selection. Our findings could guide the candidate selection for the ongoing reintroduction or translocation of pandas.
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Millanes AM, Truong C, Westberg M, Diederich P, Wedin M. Host switching promotes diversity in host-specialized mycoparasitic fungi: uncoupled evolution in the Biatoropsis-usnea system. Evolution 2014; 68:1576-93. [PMID: 24495034 DOI: 10.1111/evo.12374] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2013] [Accepted: 01/24/2014] [Indexed: 12/15/2022]
Abstract
Fungal mycoparasitism-fungi parasitizing other fungi-is a common lifestyle in some basal lineages of the basidiomycetes, particularly within the Tremellales. Relatively nonaggressive mycoparasitic fungi of this group are in general highly host specific, suggesting cospeciation as a plausible speciation mode in these associations. Species delimitation in the Tremellales is often challenging because morphological characters are scant. Host specificity is therefore a great aid to discriminate between species but appropriate species delimitation methods that account for actual diversity are needed to identify both specialist and generalist taxa and avoid inflating or underestimating diversity. We use the Biatoropsis-Usnea system to study factors inducing parasite diversification. We employ morphological, ecological, and molecular data-methods including genealogical concordance phylogenetic species recognition (GCPSR) and the general mixed Yule-coalescent (GMYC) model-to assess the diversity of fungi currently assigned to Biatoropsis usnearum. The degree of cospeciation in this association is assessed with two cophylogeny analysis tools (ParaFit and Jane 4.0). Biatoropsis constitutes a species complex formed by at least seven different independent lineages and host switching is a prominent force driving speciation, particularly in host specialists. Combining ITS and nLSU is recommended as barcode system in tremellalean fungi.
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Affiliation(s)
- Ana M Millanes
- Departamento de Biología y Geología, Universidad Rey Juan Carlos, E-28933 Móstoles, Spain.
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Lonsdorf E, Travis D, Ssuna R, Lantz E, Wilson M, Gamble K, Terio K, Leendertz F, Ehlers B, Keele B, Hahn B, Gillespie T, Pond J, Raphael J, Collins A. Field immobilization for treatment of an unknown illness in a wild chimpanzee (Pan troglodytes schweinfurthii) at Gombe National Park, Tanzania: findings, challenges, and lessons learned. Primates 2014; 55:89-99. [PMID: 23872909 PMCID: PMC3872260 DOI: 10.1007/s10329-013-0372-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2013] [Accepted: 07/01/2013] [Indexed: 12/24/2022]
Abstract
Infectious diseases are widely presumed to be one of the greatest threats to ape conservation in the wild. Human diseases are of particular concern, and the costs and benefits of human presence in protected areas with apes are regularly debated. While numerous syndromes with fatal outcomes have recently been described, precise identification of pathogens remains difficult. These diagnostic difficulties are compounded by the fact that direct veterinary intervention on wild apes is quite rare. Here we present the unique case of a wild chimpanzee at Gombe National Park that was observed with a severe illness and was subsequently examined and treated in the field. Multiple specimens were collected and tested with the aim of identifying the pathogen responsible for the illness. Our findings represent the first extensive screening of a living wild chimpanzee, yet despite our efforts, the cause and source of illness remain unknown. Nevertheless, our findings represent valuable baseline data for the ape conservation community and for comparison with other recent findings. In addition, we present the case here to demonstrate the planning required and multiple types of expertise necessary to maximize the amount of data obtained from such a rare intervention, and to provide lessons learned for future studies.
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Affiliation(s)
- Elizabeth Lonsdorf
- Department of Psychology, Franklin and Marshall College, P.O. Box 3003, Lancaster, PA, 17604, USA,
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Abstract
SUMMARYHost-parasite interactions are an integral part of ecosystems that influence both ecological and evolutionary processes. Humans are currently altering environments the world over, often with drastic consequences for host-parasite interactions and the prevalence of parasites. The mechanisms behind the changes are, however, poorly known. Here, we explain how host-parasite interactions depend on two crucial steps – encounter rate and host-parasite compatibility – and how human activities are altering them and thereby host-parasite interactions. By drawing on examples from the literature, we show that changes in the two steps depend on the influence of human activities on a range of factors, such as the density and diversity of hosts and parasites, the search strategy of the parasite, and the avoidance strategy of the host. Thus, to unravel the mechanisms behind human-induced changes in host-parasite interactions, we have to consider the characteristics of all three parts of the interaction: the host, the parasite and the environment. More attention should now be directed to unfold these mechanisms, focusing on effects of environmental change on the factors that determine encounter rate and compatibility. We end with identifying several areas in urgent need of more investigations.
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Gómez A, Nichols E. Neglected wild life: Parasitic biodiversity as a conservation target. Int J Parasitol Parasites Wildl 2013; 2:222-7. [PMID: 24533340 PMCID: PMC3862516 DOI: 10.1016/j.ijppaw.2013.07.002] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2013] [Revised: 07/17/2013] [Accepted: 07/20/2013] [Indexed: 11/20/2022]
Abstract
Parasites appropriate host resources to feed and/or to reproduce, and lower host fitness to varying degrees. As a consequence, they can negatively impact human and animal health, food production, economic trade, and biodiversity conservation. They can also be difficult to study and have historically been regarded as having little influence on ecosystem organization and function. Not surprisingly, parasitic biodiversity has to date not been the focus of much positive attention from the conservation community. However, a growing body of evidence demonstrates that parasites are extremely diverse, have key roles in ecological and evolutionary processes, and that infection may paradoxically result in ecosystem services of direct human relevance. Here we argue that wildlife parasites should be considered meaningful conservation targets no less relevant than their hosts. We discuss their numerical and functional importance, current conservation status, and outline a series of non-trivial challenges to consider before incorporating parasite biodiversity in conservation strategies. We also suggest that addressing the key knowledge gaps and communication deficiencies that currently impede broad discussions about parasite conservation requires input from wildlife parasitologists.
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Affiliation(s)
- Andrés Gómez
- American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA
| | - Elizabeth Nichols
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
- Department of Ecology, Institute of Bioscience, University of São Paulo, 05508-900 São Paulo, SP, Brazil
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Heard MJ, Smith KF, Ripp K, Berger M, Chen J, Dittmeier J, Goter M, McGarvey ST, Ryan E. The threat of disease increases as species move toward extinction. Conserv Biol 2013; 27:1378-1388. [PMID: 24033873 PMCID: PMC4398030 DOI: 10.1111/cobi.12143] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2012] [Accepted: 03/19/2013] [Indexed: 05/29/2023]
Abstract
At local scales, infectious disease is a common driver of population declines, but globally it is an infrequent contributor to species extinction and endangerment. For species at risk of extinction from disease important questions remain unanswered, including when does disease become a threat to species and does it co-occur, predictably, with other threats? Using newly compiled data from the International Union for Conservation of Nature (IUCN) Red List, we examined the relative role and co-occurrence of threats associated with amphibians, birds, and mammals at 6 levels of extinction risk (i.e., Red List status categories: least concern, near threatened, vulnerable, endangered, critically endangered, and extinct in the wild/extinct). We tested the null hypothesis that the proportion of species threatened by disease is the same in all 6 Red List status categories. Our approach revealed a new method for determining when disease most frequently threatens species at risk of extinction. The proportion of species threatened by disease varied significantly between IUCN status categories and linearly increased for amphibians, birds, and all species combined as these taxa move from move from least concern to critically endangered. Disease was infrequently the single contributing threat. However, when a species was negatively affected by a major threat other than disease (e.g., invasive species, land-use change) that species was more likely to be simultaneously threatened by disease than species that had no other threats. Potential drivers of these trends include ecological factors, clustering of phylogenetically related species in Red List status categories, discovery bias among species at greater risk of extinction, and availability of data. We echo earlier calls for baseline data on the presence of parasites and pathogens in species when they show the first signs of extinction risk and arguably before. La Amenaza de Enfermedades Incrementa a Medida que las Especies se Aproximan a la Extinción.
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Affiliation(s)
- Matthew J. Heard
- Brown University, Environmental Change Initiative, Box 1951, Providence, RI 02912
| | - Katherine F. Smith
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
| | - Kelsey Ripp
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
| | - Melanie Berger
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
| | - Jane Chen
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
| | - Justin Dittmeier
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
| | - Maggie Goter
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
| | - Stephen T. McGarvey
- Brown University, Department of Epidemiology, 121 S. Main St. Providence, RI 02912
| | - Elizabeth Ryan
- Brown University, Department of Ecology & Evolutionary Biology, Box G-W, Providence, RI 02912
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Abstract
Species loss can result in the subsequent loss of affiliate species. Though largely ignored to date, these coextinctions can pose threats to human health by altering the composition, quantity and distribution of zoonotic parasites. We simulated host extinctions from more than 1300 host-parasite associations for 29 North American carnivores to investigate changes in parasite composition and species richness. We also explored the geography of zoonotic parasite richness under three carnivore composition scenarios and examined corresponding levels of human exposure. We found that changes in parasite assemblages differed among parasite groups. Because viruses tend to be generalists, the proportion of parasites that are viruses increased as more carnivores went extinct. Coextinction of carnivore parasites is unlikely to be common, given that few specialist parasites exploit hosts of conservation concern. However, local extirpations of widespread carnivore hosts can reduce overall zoonotic richness and shift distributions of parasite-rich areas. How biodiversity influences disease risks remains the subject of debate. Our results make clear that hosts vary in their contribution to human health risks. As a consequence, so too does the loss (or gain) of particular hosts. Anticipating changes in host composition in future environments may help inform parasite conservation and disease mitigation efforts.
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Affiliation(s)
- Nyeema C. Harris
- Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC 27607, USA
| | - Robert R. Dunn
- Department of Biological Sciences and Keck Behavioral Biology Group, North Carolina State University, Raleigh, NC 27607, USA
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Kamiya T, O'Dwyer K, Nakagawa S, Poulin R. What determines species richness of parasitic organisms? A meta-analysis across animal, plant and fungal hosts. Biol Rev Camb Philos Soc 2013; 89:123-34. [DOI: 10.1111/brv.12046] [Citation(s) in RCA: 166] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2013] [Revised: 05/10/2013] [Accepted: 05/23/2013] [Indexed: 11/26/2022]
Affiliation(s)
- Tsukushi Kamiya
- Department of Zoology; University of Otago; Dunedin 9054 New Zealand
| | - Katie O'Dwyer
- Department of Zoology; University of Otago; Dunedin 9054 New Zealand
| | - Shinichi Nakagawa
- Department of Zoology; University of Otago; Dunedin 9054 New Zealand
| | - Robert Poulin
- Department of Zoology; University of Otago; Dunedin 9054 New Zealand
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