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For: Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. ACTA ACUST UNITED AC 2013;29:1072-5. [PMID: 23422339 DOI: 10.1093/bioinformatics/btt086] [Citation(s) in RCA: 6429] [Impact Index Per Article: 535.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Number Cited by Other Article(s)
1
Dong X, Xiang Y, Li L, Zhang Y, Wu T. Genomic insights into the rapid rise of Pseudomonas aeruginosa ST463: A high-risk lineage's adaptive strategy in China. Virulence 2025;16:2497901. [PMID: 40320374 PMCID: PMC12051580 DOI: 10.1080/21505594.2025.2497901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 12/19/2024] [Accepted: 04/17/2025] [Indexed: 05/08/2025]  Open
2
Serna C, Calderón Bernal JM, Torre-Fuentes L, García Muñoz Á, Díez Guerrier A, Hernández M, Fernández-Garayzábal JF, Vela AI, Cid D, Alvarez J. Integrative and conjugative elements associated with antimicrobial resistance in multidrug resistant Pasteurella multocida isolates from bovine respiratory disease (BRD)-affected animals in Spanish feedlots. Vet Q 2025;45:1-15. [PMID: 40055923 PMCID: PMC11892046 DOI: 10.1080/01652176.2025.2474220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 12/16/2024] [Accepted: 02/24/2025] [Indexed: 05/13/2025]  Open
3
Valentin C, Brito Rodrigues P, Verce M, Delbauve S, La Palombara L, Demaret F, Allard J, Salmon I, Cani PD, Köhler A, Everard A, Flamand V. Maternal probiotic exposure enhances CD8 T cell protective neonatal immunity and modulates offspring metabolome to control influenza virus infection. Gut Microbes 2025;17:2442526. [PMID: 39710590 DOI: 10.1080/19490976.2024.2442526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/10/2024] [Revised: 12/04/2024] [Accepted: 12/09/2024] [Indexed: 12/24/2024]  Open
4
Mukhopadhya I, Martin JC, Shaw S, Gutierrez-Torrejon M, Boteva N, McKinley AJ, Gratz SW, Scott KP. Novel insights into carbohydrate utilisation, antimicrobial resistance, and sporulation potential in Roseburia intestinalis isolates across diverse geographical locations. Gut Microbes 2025;17:2473516. [PMID: 40089923 PMCID: PMC11913394 DOI: 10.1080/19490976.2025.2473516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/28/2024] [Revised: 02/11/2025] [Accepted: 02/21/2025] [Indexed: 03/17/2025]  Open
5
Samarra A, Renwick S, Arzamasov AA, Rodionov DA, Spann K, Cabrera-Rubio R, Acuna-Gonzalez A, Martínez-Costa C, Hall L, Segata N, Osterman AL, Bode L, Collado MC. Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome. Gut Microbes 2025;17:2501192. [PMID: 40340669 PMCID: PMC12068340 DOI: 10.1080/19490976.2025.2501192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/26/2024] [Revised: 03/22/2025] [Accepted: 04/28/2025] [Indexed: 05/10/2025]  Open
6
Grote A, Hendin N, Amit S, Adani B, Rahav G, Adler A, Livny J, Gal-Mor O, Earl AM. Genetic diversity of Salmonella enterica during acute human infections. Gut Microbes 2025;17:2491666. [PMID: 40260673 PMCID: PMC12026202 DOI: 10.1080/19490976.2025.2491666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/25/2024] [Revised: 03/27/2025] [Accepted: 04/05/2025] [Indexed: 04/24/2025]  Open
7
Chen Y, Liu Q, Xu XW. Spatio-temporal variability of nitrogen-cycling potentials in particle-attached and free-living microbial communities in the Yangtze River estuary and adjacent regions. MARINE POLLUTION BULLETIN 2025;217:118121. [PMID: 40344797 DOI: 10.1016/j.marpolbul.2025.118121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2025] [Revised: 04/22/2025] [Accepted: 05/05/2025] [Indexed: 05/11/2025]
8
Jiang S, Matuszewska M, Chen M, Hong Y, Chen Y, Wang Z, Zhuang H, Sun L, Zhu F, Wang H, Wu X, Ji S, Holmes MA, Ba X, Chen Y, Yu Y. Emergence and spread of ST5 methicillin-resistant Staphylococcus aureus with accessory gene regulator dysfunction: genomic insights and antibiotic resistance. Microbiol Res 2025;297:128196. [PMID: 40311457 DOI: 10.1016/j.micres.2025.128196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2025] [Revised: 04/23/2025] [Accepted: 04/24/2025] [Indexed: 05/03/2025]
9
Li G, Srinivasan V, Tooker NB, Wang D, Onnis-Hayden A, Bott C, Dombrowski P, Pinto A, Gu AZ. Metagenomic analysis revealed community-level metabolic differences between full-scale EBPR and S2EBPR systems. WATER RESEARCH 2025;280:123509. [PMID: 40138860 DOI: 10.1016/j.watres.2025.123509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 03/11/2025] [Accepted: 03/15/2025] [Indexed: 03/29/2025]
10
Han Q, Wang Y, Shi C, Qian Y, Wang X, Wang S, Sun X, Yu Q, Li H. Urban landscape lakes with backwater hide higher antibiotic resistance risk than living water. JOURNAL OF HAZARDOUS MATERIALS 2025;492:138101. [PMID: 40174457 DOI: 10.1016/j.jhazmat.2025.138101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2024] [Revised: 03/19/2025] [Accepted: 03/28/2025] [Indexed: 04/04/2025]
11
Karthik M, Panchal NK, T M, Bakthavatchalam YD, Neeravi A, Abirami B, Walia K, Veeraraghavan B. Evolutionary insights into NDM variants: Identification and functional analysis of novel NDM-58 in Pseudomonas aeruginosa. Microb Pathog 2025;204:107574. [PMID: 40228751 DOI: 10.1016/j.micpath.2025.107574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Revised: 03/27/2025] [Accepted: 04/09/2025] [Indexed: 04/16/2025]
12
Li X, Shao Q, Li L, Xie L, Ruan Z, Fang Q. Cryo-EM Reveals Structural Diversity in Prolate-headed Mycobacteriophage Mycofy1. J Mol Biol 2025;437:169126. [PMID: 40187685 DOI: 10.1016/j.jmb.2025.169126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2025] [Revised: 03/28/2025] [Accepted: 03/31/2025] [Indexed: 04/07/2025]
13
Huang Y, Li XT, Jiang Z, Liang ZL, Liu W, Liu ZH, Li LZ, Yang ZN, Zhang GQ, Yin HQ, Liang JL, Zhou N, Liu SJ, Jiang CY. Mineral types dominate microbiomes and biogeochemical cycling in acid mine drainage. WATER RESEARCH 2025;278:123367. [PMID: 40020468 DOI: 10.1016/j.watres.2025.123367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2024] [Revised: 02/16/2025] [Accepted: 02/21/2025] [Indexed: 03/03/2025]
14
Abelouah MR, Idbella M, Nouj N, Ben-Haddad M, Hajji S, Ouheddou M, Ourouh J, Iacomino G, El Haouti R, Barra I, Oualid JA, Bonanomi G, Banni M, Alla AA. Marine plastic exposure triggers rapid recruitment of plastic-degrading bacteria and accelerates polymer-specific transformations. JOURNAL OF HAZARDOUS MATERIALS 2025;490:137724. [PMID: 40037197 DOI: 10.1016/j.jhazmat.2025.137724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Revised: 02/15/2025] [Accepted: 02/22/2025] [Indexed: 03/06/2025]
15
Chen P, Yu Q, Wang C, Montoya L, West PT, Xu L, Varoquaux N, Cole B, Hixson KK, Kim YM, Liu L, Zhang B, Zhang J, Li B, Purdom E, Vogel J, Jansson C, Hutmacher RB, Dahlberg JA, Coleman-Derr D, Lemaux PG, Taylor JW, Gao C. Holo-omics disentangle drought response and biotic interactions among plant, endophyte and pathogen. THE NEW PHYTOLOGIST 2025;246:2702-2717. [PMID: 40247824 DOI: 10.1111/nph.70155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Accepted: 03/30/2025] [Indexed: 04/19/2025]
16
Yuan J, Yang J, Sun Y, Meng Y, He Z, Zhang W, Dang L, Song Y, Xu K, Lv N, Zhang Z, Guo P, Yin H, Shi W. An early microbial landscape: inspiring endeavor from the China Space Station Habitation Area Microbiome Program (CHAMP). SCIENCE CHINA. LIFE SCIENCES 2025;68:1541-1554. [PMID: 40178790 DOI: 10.1007/s11427-024-2894-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Accepted: 02/28/2025] [Indexed: 04/05/2025]
17
van Westerhoven A, Fokkens L, Wissink K, Kema GJ, Rep M, Seidl M. Reference-free identification and pangenome analysis of accessory chromosomes in a major fungal plant pathogen. NAR Genom Bioinform 2025;7:lqaf034. [PMID: 40176926 PMCID: PMC11963757 DOI: 10.1093/nargab/lqaf034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2024] [Revised: 02/19/2025] [Accepted: 03/14/2025] [Indexed: 04/05/2025]  Open
18
Molina-López J, Simon-Olea B, Espinoza-Mellado MDR, Hernández-Chiñas U, Eslava-Campos CA, Balcázar JL, González-Villalobos E. Characterization of a new lytic bacteriophage (vB_KpnM_KP1) targeting Klebsiella pneumoniae strains associated with nosocomial infections. Virology 2025;607:110526. [PMID: 40203466 DOI: 10.1016/j.virol.2025.110526] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Revised: 04/01/2025] [Accepted: 04/03/2025] [Indexed: 04/11/2025]
19
Biguenet A, Valot B, El Garch F, Bertrand X, Hocquet D, the ComPath Study Group. Genomic epidemiology of third-generation cephalosporin-resistant Escherichia coli from companion animals and human infections in Europe. One Health 2025;20:100971. [PMID: 39898316 PMCID: PMC11787529 DOI: 10.1016/j.onehlt.2025.100971] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Revised: 11/26/2024] [Accepted: 01/07/2025] [Indexed: 02/04/2025]  Open
20
Ly T, de Melo Teixeira M, Jofre GI, Blanchet D, MacDonald S, Alvarado P, Marques da Silva SH, Sepúlveda VE, Zeb Q, Vreden S, Adenis A, Yegres F, Demar M, Buitrago MJS, Barker BM, Nacher M, Matute DR. High Genetic Diversity of Histoplasma in the Amazon Basin, 2006-2017. Emerg Infect Dis 2025;31:1169-1177. [PMID: 40439432 PMCID: PMC12123918 DOI: 10.3201/eid3106.241386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2025]  Open
21
Torres MC, Nemitz LC, da Silva MERJ, Martins AF, Barth AL, Siqueira FM. Genomic and phenotypic characterization of Chryseomicrobium imtechense from canine pyometra. Braz J Microbiol 2025;56:1421-1427. [PMID: 39934528 PMCID: PMC12095752 DOI: 10.1007/s42770-025-01635-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Accepted: 02/03/2025] [Indexed: 02/13/2025]  Open
22
Boby F, Bhuiyan DMNH, Khan DMS, Parvez MM. Draft genome sequence data on Bacillus safensis FB03 isolated from the rhizosphere soil of leguminous plant in Bangladesh. Data Brief 2025;60:111527. [PMID: 40248511 PMCID: PMC12005218 DOI: 10.1016/j.dib.2025.111527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Revised: 03/10/2025] [Accepted: 03/24/2025] [Indexed: 04/19/2025]  Open
23
Choi H, Yu OH, Eyun SI. Evolutionary insights into adaptation of hemocyanins from deep-sea hydrothermal vent shrimps. MARINE POLLUTION BULLETIN 2025;215:117872. [PMID: 40199006 DOI: 10.1016/j.marpolbul.2025.117872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 03/22/2025] [Accepted: 03/22/2025] [Indexed: 04/10/2025]
24
Fernández L, Duarte AC, Jurado A, Bueres L, Rodríguez A, García P. Multipronged impact of environmental temperature on Staphylococcus aureus infection by phage Kayvirus rodi: Implications for biofilm control. Biofilm 2025;9:100248. [PMID: 39845530 PMCID: PMC11751508 DOI: 10.1016/j.bioflm.2024.100248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2024] [Revised: 12/11/2024] [Accepted: 12/27/2024] [Indexed: 01/24/2025]  Open
25
Pagnossin D, Smith A, Weir W, McDonald E, Coelho J, Ure R, Oravcová K. Epidemiological and genomic characterisation of an outbreak of Streptococcus pyogenes emm5.23. J Infect 2025;90:106498. [PMID: 40319945 DOI: 10.1016/j.jinf.2025.106498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2024] [Revised: 04/15/2025] [Accepted: 04/25/2025] [Indexed: 05/07/2025]
26
Patra SD, Ghosh S, Panda RK, Sahu BR, Misra N, Kushwaha GS, Suar M. Whole genome sequence analysis of multidrug-resistant Salmonella enterica Typhimurium ms203 provides insights into virulence and antibiotic resistance. Curr Genet 2025;71:12. [PMID: 40448711 DOI: 10.1007/s00294-025-01318-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2025] [Revised: 05/21/2025] [Accepted: 05/22/2025] [Indexed: 06/02/2025]
27
Larini I, Ferrara M, Troiano E, Gatto V, Mulè G, Vitulo N, Capozzi V, Salvetti E, Felis GE, Torriani S. Unlocking the potential of Metschnikowia pulcherrima: a dive into the genomic and safety characterization of four plant-associated strains. Appl Microbiol Biotechnol 2025;109:128. [PMID: 40439729 PMCID: PMC12122572 DOI: 10.1007/s00253-025-13515-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Revised: 05/06/2025] [Accepted: 05/09/2025] [Indexed: 06/02/2025]
28
Yang LL, Xin YH, Liu Q. Flavobacterium algoriphilum sp. nov., Flavobacterium arabinosi sp. nov., Flavobacterium cryoconiti sp. nov., Flavobacterium galactosi sp. nov., Flavobacterium melibiosi sp. nov., and Flavobacterium algoris sp. nov., six novel cold-adapted bacteria isolated from glaciers. BMC Microbiol 2025;25:336. [PMID: 40437367 PMCID: PMC12117939 DOI: 10.1186/s12866-025-04067-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2025] [Accepted: 05/21/2025] [Indexed: 06/01/2025]  Open
29
Putumbaka S, Barrow CE, Poole FL, Adams MWW. Genome sequence of Cetobacterium somerae ATCC BAA-474 isolated from human feces. Microbiol Resour Announc 2025:e0119624. [PMID: 40434121 DOI: 10.1128/mra.01196-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Accepted: 05/02/2025] [Indexed: 05/29/2025]  Open
30
Lee JY, Lee Y, Park J, Kang HY, Heo YU, Lee JM, Nguyen TL, Kim DH. Complete genome sequence of Bacillus safensis strain BS22LVI isolated from the intestine of whiteleg shrimp, Litopenaeus vannamei. Microbiol Resour Announc 2025:e0011925. [PMID: 40422972 DOI: 10.1128/mra.00119-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2025] [Accepted: 04/17/2025] [Indexed: 05/28/2025]  Open
31
Li W, Cai J, Chen G, Liu Y, Wu X, Bai Y, Wu Y, Wang T. Microbial community succession mediated by planting patterns in the Loess Plateau, China: Implications for ecological restoration. PLoS One 2025;20:e0324786. [PMID: 40424445 PMCID: PMC12112373 DOI: 10.1371/journal.pone.0324786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Accepted: 05/01/2025] [Indexed: 05/29/2025]  Open
32
Yang Z, Zhang S, Li X. Complete genome sequence of Cupriavidus sp. Agwp_2, isolated from soil in an iron mining area. Microbiol Resour Announc 2025:e0088424. [PMID: 40422977 DOI: 10.1128/mra.00884-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2024] [Accepted: 11/20/2024] [Indexed: 05/28/2025]  Open
33
Thapa S, Shrestha B, Joshi DR, Tuladhar R, Getino M, Shrestha M, Pokhrel Y, Jauneikaite E. Draft genome sequence of carbapenem-resistant Klebsiella pneumoniae ST6260 isolated from the catheter tip of a female patient in Nepal. Microbiol Resour Announc 2025:e0014525. [PMID: 40422976 DOI: 10.1128/mra.00145-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Accepted: 05/06/2025] [Indexed: 05/28/2025]  Open
34
Shi L, Ng JKW, Xiong Q, Ao KFK, Shin SK, Law CTY, Mu W, Liu GM, Rao S, Tsui SKW. Comparative genomic analysis of immune-related genes and chemosensory receptors provides insights into the evolution and adaptation of four major domesticated Asian carps. BMC Genomics 2025;26:529. [PMID: 40419972 PMCID: PMC12105343 DOI: 10.1186/s12864-025-11719-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Accepted: 05/15/2025] [Indexed: 05/28/2025]  Open
35
Kirdat K, Patwekar U, Jain K, Mubarak M, Choudhary P, Thakkar L, Thorat V, Madamwar D, Lodha T, Yadav A. Genomic insights into Neopusillimonas aestuarii sp. nov., a novel estuarine bacterium with adaptations for ectoine biosynthesis and stress tolerance. Antonie Van Leeuwenhoek 2025;118:82. [PMID: 40418388 DOI: 10.1007/s10482-025-02093-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2024] [Accepted: 05/03/2025] [Indexed: 05/27/2025]
36
Pearl S, Anbarasu A. Genomic landscape of nosocomial Acinetobacter baumannii: A comprehensive analysis of the resistome, virulome, and mobilome. Sci Rep 2025;15:18203. [PMID: 40414962 DOI: 10.1038/s41598-025-03246-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2025] [Accepted: 05/19/2025] [Indexed: 05/27/2025]  Open
37
Yu J, Ding Y, Zhang X, Fang Y, Tai S, Yuan E, Duan Y. Whole-genome sequencing analysis of Staphylococcus aureus isolated from female patients with mastitis in Henan, China. J Glob Antimicrob Resist 2025:S2213-7165(25)00123-7. [PMID: 40419111 DOI: 10.1016/j.jgar.2025.05.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2024] [Revised: 05/14/2025] [Accepted: 05/22/2025] [Indexed: 05/28/2025]  Open
38
Lorenzen S, Dieckmann AL, Možina SS, Zelenik K, Marquardt P, Tersteegen A, Kaasch AJ, Bohne W, Zautner AE. Characterization of aquatic clade 2 and 3 Campylobacter coli isolates from Slovenia reveals admixture with other Campylobacter species. BMC Microbiol 2025;25:322. [PMID: 40413380 DOI: 10.1186/s12866-025-04042-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2025] [Accepted: 05/13/2025] [Indexed: 05/27/2025]  Open
39
Astuti RI, Maulana I, Wahyuni WT, Meryandini A. Genetic properties of mercury‑tolerant yeast, Pichia kudriavzevii 1P4. Int Microbiol 2025:10.1007/s10123-025-00666-3. [PMID: 40410606 DOI: 10.1007/s10123-025-00666-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Revised: 04/16/2025] [Accepted: 04/30/2025] [Indexed: 05/25/2025]
40
Zinger A, Doron-Faigenboim A, Gelbart D, Levin I, Lapidot M. Contribution of the tobamovirus resistance gene Tm-1 to control of tomato brown rugose fruit virus (ToBRFV) resistance in tomato. PLoS Genet 2025;21:e1011725. [PMID: 40408442 DOI: 10.1371/journal.pgen.1011725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Accepted: 05/13/2025] [Indexed: 05/25/2025]  Open
41
Hetland MAK, Winkler MA, Kaspersen H, Håkonsholm F, Bakksjø RJ, Bernhoff E, Delgado-Blas JF, Brisse S, Correia A, Fostervold A, Lam MMC, Lunestad BT, Marathe NP, Raffelsberger N, Samuelsen Ø, Sunde M, Sundsfjord A, Urdahl AM, Wick RR, Holt KE, Löhr IH. Complete genomes of 568 diverse Klebsiella pneumoniae species complex isolates from humans, animals, and marine sources in Norway from 2001 to 2020. Microbiol Resour Announc 2025:e0093124. [PMID: 40401948 DOI: 10.1128/mra.00931-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2024] [Accepted: 12/02/2024] [Indexed: 05/23/2025]  Open
42
Vazquez-Guillen JM, Palacios-Saucedo GC, Rivera-Morales LG, Caballero-Trejo A, Flores-Flores AS, Quiroga-Garza JM, Chavez-Santoscoy RA, Hernandez-Perez J, Hinojosa-Alvarez SA, Hernandez-Gonzalez JA, Rojas-Contreras M, Vazquez-Juarez R, Valladares-Trujillo R, Alonso-Tellez CA, Treviño-Baez JD, Rivera-Alvarado MA, Tamez-Guerra RS, Rodriguez-Padilla C. Genomic profiling of Streptococcus agalactiae (Group B Streptococcus) isolates from pregnant women in northeastern Mexico: clonal complexes, virulence factors, and antibiotic resistance. PeerJ 2025;13:e19454. [PMID: 40416609 PMCID: PMC12103846 DOI: 10.7717/peerj.19454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2024] [Accepted: 04/21/2025] [Indexed: 05/27/2025]  Open
43
Gestels Z, Torfs B, Abdellati S, De Baetselier I, Rombouts C, Dermauw V, Manoharan-Basil SS, Kenyon C. "Acceptable" concentrations of enrofloxacin in food lead to reduced enrofloxacin susceptibility in a mouse model of gastrointestinal Klebsiella pneumoniae. Microbiol Spectr 2025:e0038525. [PMID: 40401967 DOI: 10.1128/spectrum.00385-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2025] [Accepted: 04/14/2025] [Indexed: 05/23/2025]  Open
44
Darden B, Johnson G, Busch G, Sharma I. Draft genome sequence of Vreelandella neptunia strain 04GJ23 isolated from the underwater Hawaii seamounts. Microbiol Resour Announc 2025:e0088224. [PMID: 40401939 DOI: 10.1128/mra.00882-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Accepted: 04/17/2025] [Indexed: 05/23/2025]  Open
45
Rahaman MM, Sadique A, Alam J, Khan F, Ayesha Z, Islam S, Murshid M, Rafsan R, Islam S, Iqbal HB, Das TK, Ahmed O, Rumman K, Sharmin A, Hossain MM, Alam M, Hossain M. Draft genome sequence of Pseudomonas aeruginosa strain maqsudiensis isolated from cattle swab in Dhaka, Bangladesh. Microbiol Resour Announc 2025:e0119024. [PMID: 40396781 DOI: 10.1128/mra.01190-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Accepted: 02/06/2025] [Indexed: 05/22/2025]  Open
46
Vietmeier A, Valkanas M, Lamagna N, Flett S, Gulliver D, Trun N. Bacterial nitrite production oxidizes Fe(II) bioremediating acidic abandoned coal mine drainage. Appl Environ Microbiol 2025;91:e0040525. [PMID: 40237488 DOI: 10.1128/aem.00405-25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2025] [Accepted: 03/17/2025] [Indexed: 04/18/2025]  Open
47
Lysenko YA, Milovanov AV, Kopyltsov SV, Gahurová D, Elisiutikova AV. Draft genome of Lactobacillus amylovorus KSAU with probiotic potential isolated from the gastrointestinal tract of industrial pigs. Microbiol Resour Announc 2025:e0057724. [PMID: 40396734 DOI: 10.1128/mra.00577-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 02/24/2025] [Indexed: 05/22/2025]  Open
48
Brunelli L, Perotti S, Gargari G, De Vitis V, Mantegazza G, Ferrari R, Minuzzo M, Pierallini E, Ricci G, Fiore W, Guglielmetti S. Genetic and phenotypic stability of Lacticaseibacillus paracasei DG (DSM 34154) over 10 years of industrial production. Appl Environ Microbiol 2025;91:e0239424. [PMID: 40272178 DOI: 10.1128/aem.02394-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2024] [Accepted: 03/25/2025] [Indexed: 04/25/2025]  Open
49
Horiguchi T, Umeyama T, Tomuro H, Otani A, Shinohara T, Abe M, Takatsuka S, Miyazawa K, Nagi M, Muraosa Y, Hoshino Y, Sakoh T, Araoka H, Uchida N, Kaneko T, Nagano Y, Tsukada H, Miyazaki T, Miyazaki Y. Whole-Genome Sequencing and Comparative Genomic Analysis of Three Clinical Bloodstream Infection Isolates of Trichosporon austroamericanum. J Fungi (Basel) 2025;11:401. [PMID: 40422735 DOI: 10.3390/jof11050401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2025] [Revised: 05/16/2025] [Accepted: 05/19/2025] [Indexed: 05/28/2025]  Open
50
Wang Y, Yang L, Wu W, Feng Z, He J, Guo C, He J. Bacillus haimaensis sp. nov.: a novel cold seep-adapted bacterium with unique biosynthetic potential. Appl Environ Microbiol 2025;91:e0245624. [PMID: 40277363 DOI: 10.1128/aem.02456-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2024] [Accepted: 02/18/2025] [Indexed: 04/26/2025]  Open
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