The Fungal Cell Wall: Structure, Biosynthesis, and Function

A novel mannan-specific chimeric antigen receptor M-CAR redirects T cells to interact with Candida spp. hyphae and Rhizopus oryzae spores

Invasive fungal infections (IFIs) are responsible for elevated rates of morbidity and mortality, causing around of 1.5 million deaths annually worldwide. One of the main causative agents of IFIs is Candida albicans, and non-albicans Candida species have emerged as a spreading global public health concernment. Furthermore, COVID-19 has contributed to a boost in the incidence of IFIs, such as mucormycosis, in which Rhizopus oryzae is the most prevalent causative agent. The effector host immune response against IFIs depends on the activity of T cells, which are susceptible to the regulatory effects triggered by fungal virulence factors. The fungal cell wall plays a crucial role as a virulence factor, and its remodeling compromises the development of a specific T-cell response. The redirection of Jurkat T cells to target Candida spp. by recognizing targets expressed on the fungal cell wall can be facilitated using chimeric antigen receptor (CAR) technology. This study generated an M-CAR that contains an scFv with specificity to α-1,6 mannose backbone of fungal mannan, and the expression of M-CAR on the surface of modified Jurkat cells triggered a strong activation against Candida albicans (hyphae form), Candida tropicalis (hyphae form), Candida parapsilosis (pseudohyphal form), and Candida glabrata (yeast form). Moreover, M-CAR Jurkat cells recognized Rhizopus oryzae spores, which induced high expression of cell activation markers. Thus, a novel Mannan-specific CAR enabled strong signal transduction in modified Jurkat cells in the presence of Candida spp. or R. oryzae.

Stress responsive glycosylphosphatidylinositol-anchored protein SsGSP1 contributes to Sclerotinia sclerotiorum virulence

Fungal cell wall acts as a defense barrier, shielding the cell from varying environmental stresses. Cell wall proteins, such as glycosylphosphatidylinositol (GPI)-anchored proteins, are involved in swift and appropriate responses to minor environmental changes in fungi. However, the roles of these proteins in the pathogenic Sclerotinia sclerotiorum remain largely unexplored. Here, we identified a novel GPI-anchored protein in S. sclerotiorum, SsGSP1, comprising a Kre9_KNH domain. SsGSP1 was upregulated during infection, and the loss-of-function mutants of SsGSP1 exhibited the compromised cell wall integrity and reduced β-glucan content. During inoculation on Arabidopsis thaliana, Nicotiana benthamiana, and Brassica napus, the SsGSP1-deletion strains demonstrated the decreased virulence. The transgenic A. thaliana line carrying the sRNA targeting SsGSP1 enhanced resistance to S. sclerotiorum via Host-Induced Gene Silencing (HIGS). The SsGSP1-deficient strains displayed the heightened sensitivity to various stresses, including osmotic pressure, oxidative stress, and heat shock. The yeast two-hybrid and BiFC assays confirmed that SsGSP1 interacted with the key stress-related proteins catalase SsCat2, heat shock protein Sshsp60, and ABC transporter SsBMR1. Accordingly, transcriptome analysis revealed that the disruption of SsGSP1 downregulated the expression of genes involved in oxidative stress response, heat shock response, and chemical agent resistance. These results collectively delineate the intricate role of GPI-anchored protein SsGSP1 in β-glucan, cell wall integrity, and virulence and may act as a potential surface sensor to elicit signal transduction in response to environmental stresses in S. sclerotiorum.

Mannan is a context-dependent shield that modifies virulence in Nakaseomyces glabratus

Fungal-host interaction outcomes are influenced by how the host recognizes fungal cell wall components. Mannan is a major cell wall carbohydrate and can be a glycoshield that blocks the inner cell wall β-1,3-glucan from activating pro-inflammatory immune responses. Disturbing this glycoshield in Candida albicans results in enhanced antifungal host responses and reduced fungal virulence. However, deletions affecting mannan synthesis can lead to systemic hypervirulence for Nakaseomyces glabratus (formerly Candida glabrata) suggesting that proper mannan architecture dampens virulence for this organism. N. glabratus is the second leading cause of invasive and superficial candidiasis, but little is known about how the cell wall affects N. glabratus pathogenesis. In order to better understand the importance of these species-specific cell wall adaptations in infection, we set out to investigate how the mannan polymerase II complex gene, MNN10, contributes to N. glabratus cell wall architecture, immune recognition, and virulence in reference strains BG2 and CBS138. mnn10Δ cells had thinner inner and outer cell wall layers and elevated mannan, chitin, and β-1,3-glucan exposure compared to wild-type cells. Consistent with these observations, mnn10Δ cells activated the β-1,3-glucan receptor in oral epithelial cells (OECs), EphA2, and caused less OEC damage than wild-type. mnn10Δ replication was also restricted in macrophages compared to wild-type controls. Yet, during systemic infection in Galleria mellonella larvae, mnn10Δ cells induced rapid larval melanization and BG2 mnn10Δ cells killed larvae significantly faster than wild-type. Thus, our data suggest that mannan plays context-dependent roles in N. glabratus pathogenesis, acting as a glycoshield in superficial disease models and modulating virulence during systemic infection.

A negative melanin regulator, Mamrn, regulates thermo and UV tolerance via distinct mechanisms in Metarhizium

Melanin, a polyphenol pigment found extensively in fungi, has had its biosynthesis pathway clarified in recent years. Nonetheless, the regulatory mechanisms involved in melanin biosynthesis are still not well understood. This study uncovered a new negative regulator of melanin, Mamrn (melanin negative regulator in Metarhizium acridum), which, upon deletion, led to a 75 % increase in melanin production and significantly denser cell walls compared with the wild-type and complemented strains. Mamrn was found to influence melanin biosynthesis in Metarhizium acridum by regulating polyketide synthase (PKS) gene and 1,3,6,8-Tetrahydroxynaphthalene reductase (THR) gene through interaction with their promoter regions. Additionally, the knockdown of Mamrn resulted in delayed conidial germination, a 109.2 % conidial yield increase in nutrient-poor Sucrose yeast extract agar (SYA) medium, and a 72.2 % reduction in conidial yield in nutrient-rich Sabouraud dextrose agar (1/4 SDAY) medium, but with no significant changes in virulence against the 5th instar nymphs of Locusta migratoria compared with the control and wild-type strains. The ΔMamrn strain showed a 76 % reduction in heat shock tolerance and a 178 % increase in UV-B irradiation tolerance. Furthermore, following heat shock, the ΔMamrn strain demonstrated compromised DNA repair capability, a diminished heat shock protein (HSP) response, and a reduced reactive oxygen species (ROS) scavenging capacity of glutathione peroxidase, superoxide dismutase, and catalase. In contrast, after UV-B exposure, the DNA repair system was found to be more active. These findings suggest that Mamrn plays a crucial role in regulating thermotolerance by affecting ROS scavenging capacity and DNA repair via the HSP response, while it negatively impacts UV tolerance by affecting melanin production, cell wall density, and DNA repair mechanisms in Metarhizium acridum. In summary, Mamrn negatively regulates melanin synthesis and influences thermal and UV-B tolerance through different pathways.

Nitrogen-dependent regulation of extracellular and intracellular polysaccharide content in Ganoderma lucidum via the transcription factor AreA

Fungal polysaccharides serve as vital components and hold significant value in food and medicinal applications. Nitrogen plays a crucial role in the biosynthesis of fungal polysaccharides, yet our comprehension of its specific influence on fungal polysaccharides biosynthesis remains limited. In this study, we analyzed the transcriptomic profiles of Ganoderma lucidum cultured under ammonium or nitrate sources, revealing an enrichment of the polysaccharide synthesis pathway. Further studies revealed that ammonium nitrogen promotes the synthesis of extracellular polysaccharides (EPS), while nitrate enhances that of intracellular polysaccharides (IPS). Subsequently, the role of AreA, a key transcription factor in nitrogen metabolism, in polysaccharide synthesis was investigated. Under nitrate conditions, compared to the wild-type (WT), EPS content increased by approximately 33 %, whereas IPS, chitin, and β-1,3-glucan content in the areA-silenced strains were significantly reduced by 24 %, 20 %, and 20 %-25 %, respectively. Changes in the content of chitin and β-1,3-glucan affect the cell wall's structure and integrity. Compared to ammonium conditions, under nitrate conditions, the cell wall thinned by approximately 23 % following areA silencing, and sensitivity to cell wall perturbing agents increased by approximately 20 %-30 %. In summary, this study elucidates the impact of nitrogen sources on polysaccharide synthesis, providing valuable insights into strategies for enhancing polysaccharide content in G.lucidum.

Cellular anatomy of arbuscular mycorrhizal fungi

Arbuscular mycorrhizal (AM) fungi are ancient plant mutualists that are ubiquitous across terrestrial ecosystems. These fungi are unique among most eukaryotes because they form multinucleate, open-pipe mycelial networks, where nutrients, organelles, and chemical signals move bidirectionally across a continuous cytoplasm. AM fungi play a crucial role in ecosystem functioning by supporting plant growth, mediating ecosystem diversity, and contributing to carbon cycling. It is estimated that plant communities allocate ∼3.93 Gt CO2e to AM fungi every year, much of which is stored as lipids inside the fungal network. Despite their ecological significance, the cellular biology of AM fungi remains underexplored. Here, we synthesise the current knowledge on AM fungal cellular structure and organisation. We examine AM fungal development at different biological levels - the hypha and its content, hyphal networks and AM fungal spores - and explore key cellular dynamics. This includes cell wall composition, cytoplasmic contents, nuclear and lipid organisation and dynamics, network architecture, and connectivity. We highlight how their unique cellular arrangement enables complex cytoplasmic flow and nutrient exchange processes across their open-pipe mycelial networks. We discuss how both established and novel techniques, including microscopy, culturing, and high-throughput image analysis, are helping to resolve previously unknown aspects of AM fungal biology. By comparing these insights with established knowledge in other, well-studied filamentous fungi, we identify critical knowledge gaps and propose questions for future research to further our understanding of fundamental AM fungal cell biology and its contributions to ecosystem health.

Chitin and chitosan quantification in fungal cell wall via Raman spectroscopy

Investigation of cell wall composition is necessary to understand the interactions between fungi and the environment as it is the external layer exposed to stimuli and detected by other organisms. Pochonia chlamydosporia and Akanthomyces lecanii, two fungal species living in the soil and infecting nematodes and insects, exhibit endophytic interactions with various plant species. Determination of cell wall composition is essential to understand the mechanisms underlying these interactions. Therefore, in this study, for the first time, we assessed the relative amounts of chitin and chitosan in the cell walls of P. chlamydosporia (PC123) and A. lecanii (69NZ, 85SCT, 126KNY, and 447SAF) via Raman spectroscopy. The isolate with the highest chitosan percentage was 69NZ, followed by 85SCT, PC123, 447SAF, and 126KNY. Moreover, combination with conventional approaches for chitin and chitosan quantification yielded quantitative results for all cell wall components. Overall, these results highlight the mechanisms by which fungi exhibit chitosan resistance and avoid detection by the host plant during root colonization.

Comprehensive phenotypic analysis of multiple gene deletions of α-glucan synthase and Crh-transglycosylase gene families in Aspergillus niger highlighting the versatility of the fungal cell wall

Multiple paralogs are found in the fungal genomes for several genes that encode proteins involved in cell wall biosynthesis. The genome of A. niger contains five genes encoding putative α-1,3-glucan synthases (AgsA-E) and seven genes encoding putative glucan-chitin crosslinking enzymes (CrhA-G). Here, we systematically studied the effects of the deletion of single (agsA or agsE), double (agsA and agsE), or all five ags genes (agsA-E) present in A. niger. Morphological and biochemical analysis of ags mutants emphasizes the important role of agsE in cell wall integrity, while deletion of other ags genes had minimal impact. Loss of agsE compromised cell wall integrity and altered pellet morphology in liquid cultures. Previous studies have indicated that deletion of all crh genes in A. niger did not result in cell wall integrity-related phenotypes. To determine whether the ags and crh gene families have redundant functions, both gene families were deleted using iterative CRISPR/Cas9 mediated genome editing. The 12-fold deletion mutant was viable and did not exhibit growth defects under non-stressing growth conditions. A synergistic effect on cell wall integrity was observed in this 12-fold deletion mutant, particularly when exposed to cell wall-perturbing compounds. The cell wall composition, extractability of glucans by alkali, and scanning electron microscopy analysis showed no differences between the parental strain and mutants lacking ags genes, crh genes, or both. These observations underscore the ability of fungal cells to adapt and secure cell wall integrity, even when two entire cell wall protein-encoding gene families are missing.

Characterization of the Neurospora crassa GH72 family of Laminarin/Lichenin transferases and their roles in cell wall biogenesis

In Neurospora crassa vegetative hyphae, chitin, β-1,3-glucan (laminarin), and a mixed β-1,3-/β-1,4-glucan (lichenin) are the major cell wall polysaccharides. GH72 enzymes have been shown to function as β-1,3-glucanases and glucanosyltransferases and can function in crosslinking β-1,3-glucans together. To characterize the enzymatic activities of the N. crassa enzymes, we expressed GEL-1 with a HIS6 tag in N. crassa. A chimeric maltose binding protein:GEL-2 was produced in E. coli. Purified GEL-1 and GEL-2 were used to characterize their enzymatic activities. We employed thin-layer chromatography (TLC) and polyacrylamide carbohydrate gel electrophoresis (PACE) assays to visualize GEL-1 and GEL-2 hydrolase and transferase activities on lichenin and laminarin substrates. We determined that GEL-1 functions as a laminarinase (β-1,3-glucanase) and as a laminarin transferase. We found that GEL-2 can function as a laminarinase and as a licheninase (β-1,3-/β-1,4-mixed-glucanase) and can crosslink β-1,3-glucans together. We demonstrated that GEL-2 can form enzyme:lichenin intermediates, providing evidence that GEL-2 functions as a lichenin transferase as well as a β-1,3-glucan transferase and crosslinks both types of polysaccharides into the N. crassa cell wall.

Fusarium spp. and Aspergillus flavus infection induces pathogen-specific and pathogen-independent host immune response in patients with fungal keratitis

Introduction

Fungal keratitis, caused primarily by Fusarium spp. and Aspergillus flavus, is a significant cause of corneal blindness, particularly in tropical regions. Current antifungal agents like natamycin and voriconazole have limited efficacy, underscoring the need for a deeper understanding of host immune responses.

Methods

This study employed high-throughput RNA sequencing to investigate differential gene expression in human corneal tissues from patients with Fusarium spp. and A. flavus keratitis and compared them to control cadaver corneal samples. RNA was extracted from infected and control samples, followed by sequencing and differential expression analysis. Further confirmation of differential expression of selected genes were carried out by Real-Time quantitative PCR (RT-qPCR).

Results

Data analysis identified common and Fusarium spp. and A. flavus-specific differentially expressed genes (DEGs). Pathway enrichment analysis using common genes identified pathways enriched in both infections, such as interleukin 17 (IL-17), tumor necrosis factor (TNF), and chemokine signalling. Expression of hub genes, including S100 calcium binding protein A7 (S100A7), S100 calcium binding protein A8 (S100A8), S100 calcium binding protein A9 (S100A9) and C-X-C motif chemokine ligand 8 (CXCL8), identified in interleukin 17 (IL-17) signalling, was confirmed by RT-qPCR analysis. Fusarium spp.-specific DEGs, including complement C3 (C3), interleukin 6 (IL-6), interleukin 19 (IL-19) and leucine rich alpha-2-glycoprotein 1 (LRG1), are enriched in pathways such as positive regulation of immune responses, acute inflammatory responses, leukocyte cell-cell adhesion, and the regulation of cell-cell adhesion. A. flavus-specific DEGs, such as triggering receptor expressed on myeloid cells 2 (TREM2) and apolipoprotein E (APOE), are predominantly enriched in adaptive immune response, negative regulation of immune system process, negative regulation of immune response, cell migration and motility pathways.

Discussion

RT-qPCR confirmed the key pathogen-specific DEGs, highlighting their potential as biomarkers for pathogen-specific immune responses. These findings provide insights into the distinct immune pathways triggered by Fusarium spp. and A. flavus, offering new therapeutic targets for improving fungal keratitis treatment.

Fungal immunization potentiates CD4+ T cell-independent cDC2 responses for cross-presentation

The incidence rates of fungal infections are increasing, especially in immunocompromised individuals without an FDA-approved vaccine. Accumulating evidence suggests that T cells are instrumental in providing fungal immunity. An apt stimulation and responses of dendritic cells are pivotal in inducing T-cell responses and vaccine success. Using a mouse model of fungal vaccination, we explored the dynamics, kinetics, activation, and antigen presentation of dendritic cell subsets to unravel the features of dendritic cell responses in the absence of CD4+ T cell help. The subcutaneous fungal vaccination induced more robust cDC2 responses than the cDC1 subset in draining lymph nodes. A single immunization with Blastomyces yeasts bolstered DC responses that peaked around day 5 before reverting to basal levels by day 15. The migratory cDC2 was the dominant DC subset, with higher numbers than all other DC subsets combined. Fungal vaccination augmented costimulatory molecules CD80 and CD86 without altering the levels of MHC molecules. Despite the higher fungal antigen uptake with migratory cDC2, the mean cross-presentation ability of all DC subsets was similar. Counterintuitively, deleting CD4+ T cells enhanced the DC responses, and CD4+ T cells were dispensable for conventional cross-presenting cDC1 responses. Collectively, our study shows that fungal vaccination selectively augmented cDC2 responses, and CD4+ T cells were dispensable for DC activation, antigen uptake, expression of costimulatory molecules, and cross-presentation. Our study provides novel insights into DC responses to an effective fungal vaccine for designing efficacious vaccines tailored for immunocompromised hosts.

Cell walls of filamentous fungi - challenges and opportunities for biotechnology

The cell wall of filamentous fungi is essential for growth and development, both of which are crucial for fermentations that play a vital role in the bioeconomy. It typically has an inner rigid core composed of chitin and beta-1,3-/beta-1,6-glucans and a rather gel-like outer layer containing other polysaccharides and glycoproteins varying between and within species. Only a fraction of filamentous fungal species is used for the biotechnological production of enzymes, organic acids, and bioactive compounds such as antibiotics in large amounts on a yearly basis by precision fermentation. Most of these products are secreted into the production medium and must therefore pass through fungal cell walls at high transfer rates. Thus, cell wall mutants have gained interest for industrial enzyme production, although the causal relationship between cell walls and productivity requires further elucidation. Additionally, the extraction of valuable biopolymers like chitin and chitosan from spent fungal biomass, which is predominantly composed of cell walls, represents an underexplored opportunity for circular bioeconomy. Questions persist regarding the effective extraction of these biopolymers from the cell wall and their repurposing in valorization processes. This review aims to address these issues and promote further research on understanding the cell walls in filamentous fungi to optimize their biotechnological use. KEY POINTS: • The highly complex cell walls of filamentous fungi are important for biotechnology. • Cell wall mutants show promising potential to improve industrial enzyme secretion. • Recent studies revealed enhanced avenues for chitin/chitosan from fungal biomass.

Nanoencapsulation of Curcumin and Quercetin in Zein-chitosan Shells for Enhanced Broad-spectrum Antimicrobial Efficacy and Shelf-life Extension of Strawberries

Strawberries face significant postharvest microbial spoilage risks due to high water and sugar content as well as low organic acid contents in their flesh. The study aimed to develop and characterize a novel strategy to delay microbiological spoilage in strawberries using single and coencapsulation of curcumin (Cm) and quercetin (Q), creating stable nanoencapsulates specifically designed to target mold spores, vegetative fungi, and bacteria, with potential applications for both foodservice and consumer use. Using a layer-by-layer antisolvent method, nanoencapsulates of Cm and Q were synthesized, characterized, and assayed against both human and plant pathogenic bacteria and fungi in vitro and in situ. The nanoencapsulates formed stable, spherical emulsion droplets with monodisperse size distribution, high specific surface area, and moderately electro-positive ζ-potentials. Encapsulation efficiencies were 56% (Cm), 65% (Q), and 46.05 ± 4.78% (Cm) and 53.68 ± 4.83% (Q) for CmQ. The nanoencapsulated compounds exhibited strong antimicrobial activity against Pseudomonas aeruginosa, Listeria monocytogenes, Salmonella Montevideo, Saccharomyces cerevisiae, as well as Botrytis cinerea and Aspergillus niger spores in vitro. In strawberries, Cm and Q nanoencapsulates reduced decay incidence by 60% and 80% at 25 °C and 4 °C, respectively, significantly lowering aerobic bacteria by 3.55 ± 0.20 log CFU/g for Cm and 1.97 ± 0.35 log CFU/g for Q, respectively. Yeast and mold counts were likewise reduced by 2.46 ± 0.02 log CFU/g for Cm and 1.43 ± 0.16 log CFU/g for Q. Strawberry quality parameters (firmness, pH, and color) remained stable (P ≥ 0.05) after five days at 25 °C and 15 days at 4 °C. This study highlights a sustainable and effective nanoencapsulation approach for extending the microbiological shelf life of strawberries offering a promising opportunity in food preservation to mitigate spoilage and reduce postharvest losses on perishable fruits and vegetables.

Serum-Stable, Cationic, α-Helical AMPs to Combat Infections of ESKAPE Pathogens and C. albicans

Expedition in the rate of development of antimicrobial resistance accompanied by the slowdown in the development of new antimicrobials has led to a dire necessity to develop an alternate class of antimicrobial agents. Antimicrobial peptides (AMPs), available in nature, are effective molecules that can combat microbial infections. However, due to several inherent shortcomings such as salt sensitivity of their potency, short systemic half-lives owing to protease and serum degradation, and cytotoxicity, their commercial success is limited. Inspired by α helical AMPs present in nature, here in this work, we have developed two short, cationic, helical AMPs RR-12 and FL-13. Both peptides exhibited high broad-spectrum antimicrobial activity, salt tolerance, prompt bactericidal activity, considerable serum stability, remaining non-cytotoxic and non-hemolytic at relevant microbicidal concentrations. The designed AMPs were membranolytic toward the microbial strains, though there were subtle differences in the mechanism owing to the variation in the composition of the cell membranes in different microbes. Rigorous experimental techniques and molecular dynamics (MD) simulations were performed to understand the structure, activity, and their mechanisms in detail. Positive charge, balanced hydrophobicity-hydrophilicity, and helical conformation were the different attributes that led to the development of the superior performance of the AMPs, making them valuable additions to the repertoire of therapeutically promising antimicrobials.

Engineering dispersed mycelium morphology in Aspergillus niger for enhanced mycoprotein production via CRISPR/Cas9-mediated genome editing

Filamentous fungi are widely utilized in industrial fermentation processes due to their high productivity, with mycelial morphology directly influencing fermentation broth viscosity and target product yield, which is a critical parameter for process optimization. Aspergillus niger, an FDA-approved safe filamentous fungus, typically forms tightly packed mycelial pellets in submerged cultures, which severely restricts its industrial application potential by limiting mass transfer efficiency. To address this challenge, CRISPR/Cas9 mediated genome editing coupled with fermentation optimization enhanced microbial protein production in A. niger. Endogenous α-1,3-glucan synthase genes (agsA, agsB) and galactosaminogalactan (GAG) synthase genes (sph3, uge3) were disrupted using CRISPR/Cas9, achieving complete dispersion of filamentous pellets in liquid media. This morphological engineering strategy resulted in a 77.52 % increase in biomass and 39.98 % enhancement in mycelial protein content compared to the wild-type strain (A. niger Li2). Transcriptomic analysis revealed that the engineered strain (A. niger AnΔABSU) exhibited upregulated transporter proteins (ABC transporters, MFS transporters, sugar transporters), accelerating nutrient uptake and energy metabolism; altered cell wall integrity pathways, including activation of the MAPK signaling cascade and increased sensitivity to cell wall stressors; enhanced amino acid biosynthesis, driven by upregulated gene expression in key metabolic pathways. Furthermore, response surface methodology (RSM) with Box-Behnken design optimized the fermentation medium, yielding 16.67 g/L biomass and 45.91 % protein content, representing 115.37 % and 67.01 % improvements over the unoptimized wild-type control. This study establishes a novel paradigm for constructing high-efficiency microbial protein cell factories via integrated morphological-engineering and fermentation optimization.

Current advancements and future perspectives of 1,2,3-triazoles to target lanosterol 14α-demethylase (CYP51), a cytochrome P450 enzyme: A computational approach

Antifungal resistance has become a significant challenge, necessitating the development of novel antifungal agents. Resistance often arises from prolonged and widespread use of existing treatments, leading to mutations in fungal enzymes that reduce drug efficacy. Amongst various scaffolds, 1,2,3-triazoles have emerged as antifungal agents due to their ability to bind effectively to fungal enzymes. This review examines the binding interactions of 1,2,3-triazoles with lanosterol 14α-demethylase (CYP51), an enzyme in Candida albicans (PDB IDs:5TZ1and5V5Z), highlighting their potential in fighting resistance. The CYP51 family is a captivating topic to investigate the structural and functional roles of P450 and makes for a key medical focus. It is one of crucial step in biosynthesis of sterol in eukaryotes. Antifungals mostly work on CYP51 and could also be used to treat protozoan diseases in the future. 1,2,3-Triazoles exert their antifungal effects by inhibiting the CYP51 enzyme, which is crucial for ergosterol synthesis in fungal cell membranes thereby leading to disruption of membrane integrity and ultimately leads to death of fungal cell. In silico studies like molecular docking and molecular dynamics (MD) simulations, reveal that these compounds establish strong interactions (e.g., π-π, π-alkyl, CH, hydrogen bonding, and Van der Waals interactions) with active site residues, stabilizing the ligand-enzyme complex. This review of virtual screening assays shows the adaptability of the 1,2,3-triazole scaffold and its widespread use in core antifungal compounds, making it a key pharmacophore for new lead development against resistant fungal species.

Structural and Immunomodulatory Changes in Mycelial and Exopolysaccharides from Monascus purpureus M9 after Mutation of the α-1,3-Glucan Synthase Gene

The molecular structures and immunomodulatory effects of mycelial polysaccharides (MPSs) and exopolysaccharides (EPSs) from wild-type (WT) Monascus purpureus M9 and its α-1,3-glucan synthase gene (ags1) mutant strains (Δags1: gene deletion; ags1OE: gene overexpression) were compared in this study. Mycelial aggregation was reduced in Δags1 and increased in ags1OE, confirming the positive regulatory role of α-1,3-glucan. The EPS content was significantly higher in Δags1 and lower in ags1OE, whereas the MPS contents showed the opposite trend. The relative content of galactomannan in the MPSs and EPSs increased in the following order: ags1OE < WT < Δags1 and Δags1 < WT < ags1OE. In RAW 264.7 cells, MPSs and EPSs from both WT and mutant strains enhanced the cell viability and promoted NO and cytokine (interleukin-6 and tumor necrosis factor-α) secretion. Notably, Δags1-MPS and ags1OE-EPS exhibited enhanced immunomodulatory effects compared to those from WT, likely due to their higher galactomannan contents.

Effect of CFEM proteins on pathogenicity, patulin accumulation and host immunity of postharvest apple pathogens Penicillium expansum

Penicillium expansum is a significant post-harvest pathogenic fungi on most pome fruits. Common fungal extracellular membrane (CFEM) proteins, as effectors, contribute to virulence and manipulate host immunity. However, the CFEM proteins in P. expansum have not been identified and functionally studied. In this study, we screened two P. expansum CFEM proteins, PeCFEM5 and PeCFEM8, whose expression was highly up-regulated during postharvest apple infection. Growth and pathogenicity of P. expansum were characterized by knockout and complementary of PeCFEM5 and PeCFEM8. Deletion of PeCFEM5 and PeCFEM8 resulted in changes in spore development and increased resistance to cell wall integrity stress. The lesion spots on apple and pear fruit inoculated with P. expansum gradually expanded and deepened in color. The ΔPeCFEM5 and ΔPeCFEM8 strains reduced lesion diameter on apple fruit by 47 % and 29 %, respectively, compared with the WT strains. Detection of patulin accumulation by high-performance liquid chromatography (HPLC) revealed that deletion of PeCFEM5 or PeCFEM8 suppressed patulin content in medium and apples, and patulin biosynthesis-related genes were down-regulated. The PeCFEM5 and PeCFEM8 were also confirmed as effector proteins capable of suppressing the cell death triggered by BAX and the expression of plant defense genes in Nicotiana benthamiana. Phytohormone ELISA assays showed that jasmonic acid levels were reduced, but salicylic acid levels were increased by transient expression of PeCFEM5 or PeCFEM8 in the host plant. These results indicate that PeCFEM5 and PeCFEM8 effectors are crucial for pathogenicity, patulin biogenesis, and modulating host plant immunity.

Deciphering the functions of Spt20 in the SAGA complex: Implications for Cryptococcus neoformans virulence

AIMS

The SAGA complex is a conserved transcriptional co-activator essential for eukaryotic gene regulation. In fungi of the Ascomycota, the core protein Spt20 contributes to the structure and function of SAGA. This study aimed to identify and characterize SPT20 in Cryptococcus neoformans, the WHO top-ranked critical priority group species on their Fungal Priority Pathogen list.

MATERIALS AND METHODS

Identification of C. neoformans SPT20 revealed the presence of a tRNA gene within its 5' UTR. Precisely deleting the SPT20 ORF preserved the tRNA gene while enabling analysis of Spt20 function. Phenotypic assays assessed growth under stress, capsule formation, and antifungal susceptibility. RT-qPCR divulged effects on transcriptional regulation of SAGA components, while Western blotting evaluated changes in histone acetylation and deubiquitination. A murine inhalation model assessed virulence.

KEY FINDINGS

Loss of SPT20 impaired growth under a number of stresses, influenced capsule formation, increased antifungal susceptibility, and disrupted expression of most genes encoding SAGA complex proteins. The mutant exhibited defects in several histone modifications as well as severely compromised virulence in mice.

SIGNIFICANCE

Characterization of SPT20 in C. neoformans has provided important insights into the role of this protein as a critical regulator of survival and virulence in this clinically important species.

Editing a mushroom with high-digestibility using a novel endo-N-acetyl-β-D-glucosaminidase

Fungi comprise approximately 2 % of the Earth's biomass; however, the human gastrointestinal tract has a limited capacity to digest fungal biomass. In this study, a novel endo-N-acetyl-β-D-glucosaminidase, Endo CM, was characterized in the mushroom-forming fungus Cordyceps militaris, where it plays a role in maintaining the integrity of the fungal cell wall. Through gene editing, the Endo CM promoter was engineered to remove the binding site of the CmCreA carbon catabolite repressor, and the transformant was named CmT. After 12 h of treatment with simulated digestive fluids, the residual mycelial biomass of CmT was reduced to 50.00 ± 1.57 %, compared with 69.47 ± 0.97 % (p = 0.00005) for the parent strain. CmT also released more amino acids during the simulated digestion, suggesting that the expression level of Endo CM affects the accessibility of mycelial biomass to digestive enzymes. Additionally, CmT produced fruiting bodies with improved flavor but impaired appearance. This study highlights the production of alternative proteins with high digestibility and provides a sustainable approach for breeding mushrooms with improved digestibility and absorption properties.

Structures of α-galactosaminidases from the CAZy GH114 family and homologs defining a new GH191 family of glycosidases

Endo-galactosaminidases are an underexplored family of enzymes involved in the degradation of galactosaminogalactan (GAG) and other galactosamine-containing cationic exopolysaccharides produced by fungi and bacteria. These exopolysaccharides are part of the cell wall and extracellular matrix of microbial communities. Currently, these galactosaminidases are found in three distinct CAZy families: GH114, GH135 and GH166. Despite the widespread occurrence of these enzymes in nearly all bacterial and fungal clades, only limited biochemical and structural data are available for these three groups. To expand our knowledge of endo-galactosaminidases, we selected several sequences predicted to encode endo-galactosaminidases and produced them recombinantly for structural and functional studies. Only very few predicted proteins could be produced in soluble form, and activity against bacterial Pel (pellicle) polysaccharide could only be confirmed for one enzyme. Here, we report the structures of two bacterial and one fungal enzyme. Whereas the fungal enzyme belongs to family GH114, the two bacterial enzymes do not lie in the current GH families but instead define a new family, GH191. During structure solution we realized that crystals of all three enzymes had various defects including twinning and partial disorder, which in the case of a more severe pathology in one of the structures required the design of a specialized refinement/model-building protocol. Comparison of the structures revealed several features that might be responsible for the described activity pattern and substrate specificity compared with other GAG-degrading enzymes.

Adaptive traits for chitin utilization in the saprotrophic aquatic chytrid fungus Rhizoclosmatium globosum

The Chytridiomycota (chytrids) are early diverging fungi, many of which function in ecosystems as saprotrophs; however, associated adaptive traits are poorly understood. We focused on chitin degradation, a common ecosystem function of aquatic chytrids, using the model chitinophilic Rhizoclosmatium globosum and comparison of other chytrid genomes. Zoospores are chemotactic to the chitin monomer N-acetylglucosamine and accelerate development when grown with chitin. The R. globosum secretome is dominated by different glycoside hydrolase (GH) family GH18 chitinases, with abundance matching reciprocal transcriptome mRNA sequences. Models of the secreted chitinases indicate a range of sizes and domain configurations. Along with R. globosum, the genomes of other chitinophilic chytrids also have expanded inventories of GH-encoding genes responsible for chitin processing. Several R. globosum GH18 chitinases have bacteria-like chitin-binding module domains, also present in the genomes of other chitinophilic chytrids yet absent in non-chitinophilic chytrids. Chemotaxis, increased abundance and diversity of secreted chitinases, complemented with the acquisition of novel chitin-binding capability, are probably adaptive traits that facilitate chitin saprotrophy. Our study reveals the underpinning mechanisms that have supported the niche expansion of some chytrids to utilize lucrative chitin-rich particles in aquatic ecosystems and is a demonstration of the adaptive ability of this successful fungal group.

Altering the ligand specificity of DectiSomes

DectiSomes are drug-loaded liposomes coated with pathogen receptors, such as the C-type lectins (CTL) Dectin-2 (D2) and Dectin-3 (D3, MCL). Floating on the surface of DectiSomes, the carbohydrate recognition domains (CRDs) of these CTLs form dimers that bind their cognate oligoglycan ligands. We have shown previously that amphotericin B (AmB)-loaded DectiSomes, D2-AmB-LLs and D3-AmB-LLs, are effective at binding and killing diverse pathogenic fungi. The best-known ligands of Dectin-2 and Dectin-3 in the Candida albicans cell wall and exopolysaccharide matrix include a wide variety of oligomannans. When D2-AmB-LLs or D3-AmB-LLs were labeled in their lumen with complementary green and red fluorescent proteins, Venus and mCherry, they bound the same overlapping regions of oligoglycans in C. albicans colonies. By contrast, when D2-AmB-LLs and D3-AmB-LLs were labeled on their membrane surfaces with complementary pairs of the small fluorophores FITC and Rhodamine B or with Venus and mCherry, they bound mostly non-overlapping sets of ligands. When the Dectin-2 and Dectin-3 proteins were labeled with the complementary pairs of FITC and Rhodamine, they also bound primarily distinct ligands. We proposed several models to explain these alterations in Dectin and DectiSome ligand specificity. These findings also raise important questions about the ligand binding properties of immuno-liposomes.

A review on the green synthesis of metal (Ag, Cu, and Au) and metal oxide (ZnO, MgO, Co3O4, and TiO2) nanoparticles using plant extracts for developing antimicrobial properties

Green synthesis (GS) is a vital method for producing metal nanoparticles with antimicrobial properties. Unlike traditional methods, green synthesis utilizes natural substances, such as plant extracts, microorganisms, etc., to create nanoparticles. This eco-friendly approach results in non-toxic and biocompatible nanoparticles with superior antimicrobial activity. This paper reviews the prospects of green synthesis of metal nanoparticles of silver (Ag), copper (Cu), gold (Au) and metal oxide nanoparticles of zinc (ZnO), magnesium (MgO), cobalt (Co3O4), and titanium (TiO2) using plant extracts from tissues of leaves, barks, roots, etc., antibacterial mechanisms of metal and metal oxide nanoparticles, and obstacles and factors that need to be considered to overcome the limitations of the green synthesis process. The clean surfaces and minimal chemical residues of these nanoparticles contribute to their effectiveness. Certain metals exhibit enhanced antibacterial properties only in GS methods due to the presence of bioactive compounds from natural reducing agents such as Au and MgO. GS improves TiO2 antibacterial properties under visible light, while it would be impossible without UV activation. These nanoparticles have important antimicrobial properties for treating microbial infections and combating antibiotic resistance against bacteria, fungi, and viruses by disrupting microbial membranes, generating ROS, and interfering with DNA and protein synthesis. Nanoscale size and large surface area make them critical for developing advanced antimicrobial treatments. They are effective antibacterial agents for treating infections, suitable in water purification systems, and fostering innovation by creating green, economically viable antibacterial materials. Therefore, green synthesis of metal and metal oxide nanoparticles for antibacterial agents supports several United Nations Sustainable Development Goals (SDGs), including health improvement, sustainability, and innovation.

Acyltransferases that Modify Cell Surface Polymers Across the Membrane

Cell surface oligosaccharides and related polymers are commonly decorated with acyl esters that alter their structural properties and influence their interactions with other molecules. In many cases, these esters are added to polymers that are already positioned on the extracytoplasmic side of a membrane, presenting cells with a chemical challenge because the high-energy acyl donors used for these modifications are made in the cytoplasm. How activated acyl groups are passed from the cytoplasm to extra-cytoplasmic polymers has been a longstanding question. Recent mechanistic work has shown that many bacterial acyl transfer pathways operate by shuttling acyl groups through two covalent intermediates to their final destination on an extracellular polymer. Key to these and other pathways are cross-membrane acyltransferases─enzymes that catalyze transfer of acyl groups from a donor on one side of the membrane to a recipient on the other side. Here we review what has been learned recently about how cross-membrane acyltransferases in polymer acylation pathways function, highlighting the chemical and biosynthetic logic used by two key protein families, membrane-bound O-acyltransferases (MBOATs) and acyltransferase-3 (AT3) proteins. We also point out outstanding questions and avenues for further exploration.

Phytotoxicity, Cytotoxicity, and Antimicrobial Activity of Triethanolammonium Amino Acids Salts

The growing use of ionic liquids (ILs) necessitates an understanding of their environmental impact and toxicity levels. In this study, a series of amino acid-based ionic liquids containing the triethanolammonium (TEA) cation were evaluated for their biological activity against Lepidium sativum L., the mouse fibroblast cell line L929, a selection of gram-positive and gram-negative bacteria, and the yeast Candida albicans. The influence of amino acid anion structure on toxicity was also examined. Among the tested ionic liquids, [TEA][Asp] exhibited low toxicity toward Lepidium sativum L., representing terrestrial plants, while [TEA][Phe] showed the lowest cytotoxicity. Regarding microbial activity, [TEA][Lys] demonstrated greater bactericidal effectiveness against E. coli than S. aureus, while both [TEA][Lys] and [TEA][Arg] exhibited the strongest inhibitory effect against C. albicans. Our findings underscore the crucial role of IL salt composition in determining biological activity, highlighting the significance of interactions between IL components in shaping their potential effects.

The Yeast Gsk-3 Kinase Mck1 Is Necessary for Cell Wall Remodeling in Glucose-Starved and Cell Wall-Stressed Cells

The cell wall integrity (CWI) pathway is responsible for transcriptional regulation of cell wall remodeling in response to cell wall stress. How cell wall remodeling mediated by the CWI pathway is effected by inputs from other signaling pathways is not well understood. Here, we demonstrate that the Mck1 kinase cooperates with Slt2, the MAP kinase of the CWI pathway, to promote cell wall thickening in glucose-starved cells. Integrative analyses of the transcriptome, proteome and metabolic profiling indicate that Mck1 is required for the accumulation of UDP-glucose (UDPG), the substrate for β-glucan synthesis, through the activation of two regulons: the Msn2/4-dependent stress response and the Cat8-/Adr1-mediated metabolic reprogram dependent on the SNF1 complex. Analysis of the phosphoproteome suggests that similar to mammalian Gsk-3 kinases, Mck1 is involved in the regulation of cytoskeleton-dependent cellular processes, metabolism, signaling and transcription. Specifically, Mck1 may be implicated in the Snf1-dependent metabolic reprogram through PKA inhibition and SAGA (Spt-Ada-Gcn5 acetyltransferase)-mediated transcription activation, a hypothesis further underscored by the significant overlap between the Mck1- and Gcn5-activated transcriptomes. Phenotypic analysis also supports the roles of Mck1 in actin cytoskeleton-mediated exocytosis to ensure plasma membrane homeostasis and cell wall remodeling in cell wall-stressed cells. Together, these findings not only reveal the novel functions of Mck1 in metabolic reprogramming and polarized growth but also provide valuable omics resources for future studies to uncover the underlying mechanisms of Mck1 and other Gsk-3 kinases in cell growth and stress response.

MNN45 is involved in Zcf31-mediated cell surface integrity and chitosan susceptibility in Candida albicans

Candida albicans is a major human fungal pathogen; however, limited antifungal agents, undesirable drug side effects, and ineffective prevention of drug-resistant strains have become serious problems. Chitosan is a nontoxic, biodegradable, and biocompatible linear polysaccharide made from the deacetylation of chitin. In this study, a ZCF31 putative transcription factor gene was selected from a previous mutant library screen, as zcf31Δ strains exhibited defective cell growth in response to chitosan. Furthermore, chitosan caused notable damage to zcf31Δ cells; however, ZCF31 expression was not significantly changed by chitosan, suggesting that zcf31Δ is sensitive to chitosan could be due to changes in the physical properties of C. albicans. Indeed, zcf31Δ cells displayed significant increases in cell wall thickness. Consistent with the previous study, zcf31Δ strains were resistant to calcofluor white but highly susceptible to SDS (sodium dodecyl sulfate). These results implied that chitosan mainly influences membrane function, as zcf31Δ strengthens the stress resistance of the fungal cell wall but lessens cell membrane function. Interestingly, this effect on the cell surface mechanics of the C. albicans zcf31Δ strains was not responsible for the virulence-associated function. RNA-seq analysis further revealed that six mannosyltransferase-related genes were upregulated in zcf31Δ. Although five mannosyltransferase-related mutant strains in the zcf31Δ background partially reduced the cell wall thickness, only zcf31Δ/mnn45Δ showed the recovery of chitosan resistance. Our findings suggest that Zcf31 mediates a delicate and complicated dynamic balance between the cell membrane and cell wall architectures through the mannosyltransferase genes in C. albicans, leading to altered chitosan susceptibility.

Optimization of cutoff values for (1→3)-β-d-glucan and galactomannan assays in cerebrospinal fluid for the diagnosis of non-cryptococcal fungal infections of the central nervous system

Fungal infections of the central nervous system (FI-CNS) pose substantial diagnostic challenges, owing to their diverse clinical presentations and the limited sensitivity of conventional diagnostic tests. Although serum (1→3)-β-d-glucan (BDG) and galactomannan (GM) assays are FDA-approved for the diagnosis of invasive fungal infections (IFIs), their effectiveness in cerebrospinal fluid (CSF) remains underexplored, and optimal cutoff values in CSF are not well established. This study aimed to assess the utility of BDG and GM assays in CSF for diagnosing non-cryptococcal FI-CNS. We conducted a prospective observational study at the National Institute of Mental Health and Neuro Sciences in India from January 2022 to December 2023, including CSF samples from patients suspected of fungal meningitis. The cases were categorized as proven, probable, or possible FI-CNS based on the revised EORTC/MSGERC criteria. Among 61 suspected cases, 2 were proven, 48 were probable, and 11 were possible FI-CNS. The control group included 23 patients without FI-CNS suspicion. BDG and GM testing in CSF followed manufacturers' guidelines for serum. At the manufacturer's recommended cutoff of 80 pg/ml, sensitivity of BDG was 94% and specificity was 78.3%. For GM, using the manufacturer's recommended cutoff of 0.5 optical density index (ODI), sensitivity was 42% and specificity was 100%. Receiver operating characteristic curve analysis indicated optimal cutoffs of 72 pg/ml for BDG (sensitivity 96%, specificity 78.3%) and 0.47 ODI for GM (sensitivity 44%, specificity 100%). Combining both biomarkers increased sensitivity to 97.8%, suggesting that combined BDG and GM testing in CSF could significantly enhance the diagnostic accuracy and management of FI-CNS.

Versatile applications of cobalt and copper complexes of biopolymeric Schiff base ligands derived from chitosan

In the present study, biopolymeric Schiff base (SB) ligands were synthesized from chitosan and isatin. Consequently, their earth abundant transition metal complexes of cobalt and copper were synthesized. All compounds were extensively characterized using FTIR and UV spectroscopy, thermo-gravimetric (TG) analysis, X-ray powder diffraction (XRD) and FESEM (field emission scanning electron microscopy). The impetus of this study was to explore different applications of the same transition metal complexes, thereby converting them to broad spectrum antimicrobial drugs and to useful chemical catalysts. Thus, these cobalt and copper complexes were applied as anti-bacterial and anti-fungal agents and in reductive degradation of common pollutants. Specifically, chitosan, and all synthesized compounds were investigated against fungal species, namely, Candida and Aspergillus, and bacterial species, like Pseudomonas syringae, Escherichia coli, Staphylococcus aureus and Staphylococcus epidermis. All compounds demonstrated promising antimicrobial activity. Chitosan-modified compounds demonstrated a high antifungal activity against Candida albicans and possessed superior antibacterial action than free chitosan. Additionally, catalytic ability in reductive degradation of common dyes, methylene blue (MEB), Congo red (CR) and methyl orange (MO), was investigated. These dyes were conveniently degraded in presence of metal complexes, whereas neither chitosan nor the Schiff base ligand derived from it could carry out similar reaction.

Biocontrol potential of borrelidin metabolites derived from Streptomyces rochei A144 as a fungicide

AIMS

This study aimed to isolate and identify antifungal metabolites and evaluate potential applications for biocontrol.

METHODS AND RESULTS

Using a bioactivity-guided fractionation approach, we obtained the macrolide metabolite borrelidin from Streptomyces rochei A144, which exhibited significant inhibitory effects on Valsa mali mycelial growth (EC50 = 22.23 μg ml-1). Scanning and transmission electron microscopy analyses revealed that borrelidin caused damage to V. mali hyphae, such as breakage, increased swelling and branching at the hyphal tips, irregular cell wall thickness, plasmolysis, and degeneration of cellular organelles. After borrelidin treatment, the lesion length on detached twigs and lesion area on leaves were reduced by 49.38% and 89.16%, respectively. The mycelial growth rate method was used to evaluate the antifungal activity of borrelidin against various plant pathogenic fungi. The study findings indicate that borrelidin possesses broad-spectrum antifungal activity, with inhibition rates in the range of 21.32%-100%.

CONCLUSIONS

The macrolide metabolite borrelidin, derived from S. rochei A144, exhibited significant antifungal activity against V. mali and broad-spectrum inhibition of phytopathogenic fungi.

Characterizing extracellular vesicles of human fungal pathogens

Since their discovery in 2007, there has been growing awareness of the importance of fungal extracellular vesicles (EVs) for fungal physiology, host-pathogen interactions and virulence. Fungal EVs are nanostructures comprising bilayered membranes and molecules of various types that participate in several pathophysiological processes in fungal biology, including secretion, cellular communication, immunopathogenesis and drug resistance. However, many questions remain regarding the classification of EVs, their cellular origin, passage across the cell wall, experimental models for functional and compositional analyses, production in vitro and in vivo and biomarkers for EVs. Here, we discuss gaps in the literature of fungal EVs and identify key questions for the field. We present the history of fungal EV discovery, discuss five major unanswered questions in fungal EV biology and provide future perspectives for fungal EV research. We primarily focus our discussion on human fungal pathogens, but also extend it to include knowledge of other fungi, such as plant pathogens. With this Perspective we hope to stimulate new approaches and expand studies to understand the biology of fungal EVs.

Resilience in Resistance: The Role of Cell Wall Integrity in Multidrug-Resistant Candida

The Candida species cell wall plays a pivotal role as a structural and functional barrier against external aggressors and as an intermediary in host-pathogen interactions. Candida species exhibit unique adaptations in their cell wall composition, with varying proportions of chitin, mannans, and β-glucans influenced by the environmental conditions and the morphological states. These components not only maintain cellular viability under osmotic, thermal, and chemical stress, but also serve as the key targets for novel antifungal strategies. MAPK signaling pathways, like the cell wall integrity pathway and the high-osmolarity glycerol pathway, play a crucial role in responding to cell wall stressors. Due to the rise of antifungal resistance and its clinical challenges, there is a need to identify new antifungal targets. This review discusses the recent advances in understanding the mechanisms underlying cell wall integrity, their impact on antifungal resistance and virulence, and their potential as therapeutic targets of C. albicans, N. glabratus, and C. auris.

Transcriptome Analysis Revealed That Cell Wall Regulatory Pathways Are Involved in the Tolerance of Pleurotus ostreatus Mycelia to Different Heat Stresses

Pleurotus ostreatus is the third largest cultivated species in China's edible mushroom industry; however, its agricultural cultivation method is easily affected by high-temperature environments. To understand the response mechanism of mycelia to heat stress, the mycelia of P. ostreatus, which had been grown at 28 °C for 4 days, were subjected to heat stress at 32 °C and 36 °C for 2 days, followed by RNA-seq analysis. These results indicate that, under heat stress, mycelial growth was significantly inhibited, the cell membrane was disrupted, the cell walls became thicker, and chitinase and β-1,3-glucanase activities decreased. Transcriptome analysis revealed 2118 differentially expressed genes (DEGs) under 36 °C heat stress, and 458 DEGs were identified under 32 °C heat stress. A total of 328 DEGs were upregulated or downregulated under heat stress at 36 °C and 32 °C. The functional enrichment analysis of these genes revealed significant enrichment in genes related to hydrogen peroxide metabolism, oxidoreductase activity, ATP hydrolysis, and cell wall structure composition. There was a total of 80 DEGs specific to heat stress at 32 °C, and they were significantly enriched in catalase activity, the cell wall, the aminoglycan catabolic process, and oxidoreductase activity. However, 817 DEGs specific to heat stress at 36 °C were significantly enriched in the cell wall, integral components of the membrane, and oxidoreductase activity. The identification of cell wall-related genes revealed that hydrophobic proteins, Cerato plateau proteins, laccases, and glycoside hydrolases may respond to stress. The results of qRT-PCR for cell wall-related genes are consistent with the RNA-seq data. This study revealed several potential candidate genes for high-temperature thermal response, laying the foundation for the study of the thermal response mechanism of P. ostreatus.

Polyherbal nanoformulation: a potent antifungal agent on fungal pathogens of Coffea arabica

Agriculture is the backbone of all countries which dictates the major economy of the country. The management of pathogens is critical in the field of agriculture. Many species of pathogenic fungi infect a broad range of hosts including cash crops and agricultural crops. Coffee is one of the most important commercial crop in the economy of many countries in the world. Coffea arabica is infected by several fungal species and results in decrease in the quality and quantity of coffee berries. Infection of fungi in plants not only kills the plants and fruit yield but also affect human being through toxin intoxication. Chemical fungicides are the primary choice for the control of plant pathogenic fungi. However, these chemicals pollute the environment, disturb the normal flora, fauna and aquatic environment. The intake of fungicides through inhalation or ingestion results in serious health consequences including immunological, endocrinal, neurological, gynaecological, and carcinogenic effects. Hence, it is a challenge to find a novel alternative green solution to control both pathogenic fungi and to detoxify the fungal toxins. Green nanotechnology can be adopted to develop eco-friendly nanoformulation to control fungal pathogens. In this study, fungal pathogens were isolated from infected coffee plants and identified through sequencing. The novelty of the study stands on uniqueness of Polyherbal nanoformulation which was synthesized by using Triphala. Antifungal studies were carried out by using a developed Polyherbal nanoformulation. From the results, fungal pathogens were identified as Cladorrhinum flexuosum, Rigidoporus vinctus, Mucor circinelloides, Mucor lusitanicus, and Nigrospora oryzae. On treating these fungal pathogens with PHNF, the radial growth of fungal strains was effectively controlled even at lower concentration of 3.125 µg/ml. The specific contribution of PHNF is 'synergism' which plays a significant role in controlling the growth of tested fungal pathogens. On further exploration of PHNF in field conditions will help to optimize the dosage for the commercial development of nano based fungicide for the benefit of farmers as well as a solution to global problem. In addition, these PHNF can be formulated to nanosprays and nanomaterials to control the fungal growth during post-harvest condition.

Preparation of a Fluxapyroxad Nanoformulation with Strong Plant Uptake for Efficient Control of Verticillium Wilt in Potato

Potato (Solanum tuberosum L.) is ranked as the fourth largest staple crop in China. However, potato production is increasingly threatened by Verticillium wilt (VW) caused by the fungus Verticillium dahliae in various provinces. In the present study, we explored the application of star polycation (SPc) nanocarrier to improve the effectiveness of the fungicide fluxapyroxad (Flu) in combating VW. The SPc self-assembled with Flu through hydrogen bonds and van der Waals forces to form the Flu/SPc complex spontaneously, which exhibited strong intermolecular interactions, as indicated by a high affinity constant and favorable thermodynamic parameters. Complexation with SPc decreased the particle size of Flu. The Flu/SPc complex had a greater effect on V. dahliae than Flu alone, reducing the colony diameter and spore numbers more effectively. Expression levels of multiple key genes involved in nitrogen, polysaccharide, and sugar metabolism were downregulated in V. dahliae upon Flu/SPc complex treatment compared to Flu treatment, which might contribute to the greater growth inhibition in Flu/SPc-treated samples. Uptake studies in potato plants demonstrated that SPc significantly enhanced the absorption of Flu compared with Flu alone. Slighter disease symptoms and lower fungal biomass in greenhouse and field trials confirmed the enhanced protective effects of the Flu/SPc complex on potato seedlings. This is the first report that a self-assembled nanofungicide limits V. dahliae growth and protects potatoes from destructive VW.

Making vancomycin a potent broad-spectrum antimicrobial agent using polyaziridine-stabilized gold nanoparticles as a delivery vehicle

The rise of antimicrobial drug resistance among microorganisms presents a global challenge to clinicians. Therefore, it is essential to investigate drug delivery systems to combat resistant bacteria and fungi. This study examined the potential and mode of action of vancomycin-conjugated gold nanoparticles (PEI-AuNP@Van) to enhance vancomycin's biocidal activity against C. tropicalis, C. albicans, E. coli, and P. aeruginosa. Drug conjugation and nanoparticle characterization were assessed using UV-Vis spectroscopy, X-ray diffraction, TEM, ATR-FTIR, and fluorescence spectroscopy. Effective vancomycin conjugation on polyethyleneimine-stabilized gold nanoparticles was achieved via electrostatic interactions or hydrogen bonding between the COO-/OH groups of vancomycin and the NH- groups of polyethyleneimine, yielding nanoparticles with a narrow size distribution and high zeta potential. The high luminescence of the nanoparticles facilitated their detection in microbial cells. PEI-AuNP@Van was internalized in C. albicans and C. tropicalis but showed surface adsorption in E. coli and P. aeruginosa. The in vitro results indicated that the nanodelivery system exhibited superior biocidal activity against the tested strains compared to free vancomycin and unconjugated AuNPs. The mode of action of PEI-AuNP@Van was cell-type-dependent, involving intracellular reactive oxygen species accumulation, cell membrane integrity loss, and apoptosis. The development of antimicrobial nanoformulations using AuNPs and efficient conjugation systems offers a promising approach to address antimicrobial drug resistance.

Solid-state NMR observation of chitin in whole cells by indirect 15N detection with NC, NCC, CNC and CNCC polarization transfers

Chitin is the most important nitrogen-containing polysaccharide found on Earth. This polysaccharide is a polymer of an N-acetylglucosamine and it is a crucial structural component of fungal cell walls and crustaceans. Magic-angle spinning solid-state NMR is emerging as a powerful analytical approach to study polysaccharides in the context of intact cell walls and whole cells. The presence of an acetamido group in chitin is attractive for 15N solid-state NMR. Here we investigate the use of various multi-step polarization transfer experiments incorporating indirect 15N detection at moderate spinning frequency, adapted from pulse sequences commonly employed for residue resonance assignment in biosolid proteins. The 13C,15N chitin spin topology slightly differs from amino acids, and we discussed the use of frequency-selective 15N-13C cross-polarization transfers followed by broadband or frequency-selective homonuclear 13C-13C transfers to detect chitin resonances. Demonstrated here for chitin found in the cell wall of the fungus Aspergillus fumigatus, the use of indirect 15N detection through multi-step polarization transfers could be advantageous to investigate more complex nitrogen-containing polysaccharides found in whole cells and peptidoglycan samples.

Cultivation methods and biology of Lentinula edodes

In this study, the biological applications of cultivation methods related to cultivar selection, vegetative growth, and reproductive development in Lentinula edodes cultivation are briefly reviewed to clarify the current situation and inform future developments. The current cultivars widely used in the main production areas are derived from wild strains distributed in northern Asia. The most effective techniques for cultivar identification are molecular markers identified in two nuclear genome datasets and one mitochondrial genome dataset. The current stage of cultivar breeding is at the junction of Breeding 3.0 (biological breeding) and Breeding 4.0 (intelligent breeding). Plant breeder's rights and patents have different emphases on new breeding variety protection, with the former being the most utilized globally. L. edodes is mostly produced on synthetic logs filled with sawdust substrates. Hardwood sawdust comprises approximately 80% of the substrates. The vegetative growth of L. edodes on synthetic logs involves two distinct stages of mycelial colonization and browning. Mycelia mainly perform glycolysis, tricarboxylic acid cycle, and respiratory metabolism reactions to produce energy and intermediates for synthesizing the structural components of hyphae in the vegetative colonization stage. Upon stimulation by physiological and environmental pressures after colonization, mycelia trigger gluconeogenesis, autophagy, and secondary metabolism, increase metabolic flux of pentose phosphate pathway, activate the glyoxylate cycle, and accumulate melanin on the surface of logs to ensure growth and survival. Sexually competent mycelia can form hyphal knots as a result of reprogrammed hyphal branching patterns after a period of vegetative growth (which varies by cultivar) and stimulation by specific environmental factors. Under a genetically encoded developmental program, hyphal knots undergo aggregation, tissue differentiation, primordium formation, meiosis in the hymenium, stipe elongation, basidiospore production and maturation, and cap expansion to form mature fruiting bodies. Growers can achieve good fruiting body shape and high yield by regulating the number of young fruiting bodies and adjusting specific environmental factors. KEY POINTS: • Cultivar selection becomes less with the increasing technological requirement of L. edodes cultivation. • L. edodes mycelia showed different biological events in the mycelial colonization and browning stages. • Specific cultivar breading may be the next milestone in L. edodes cultivation.

Solid-State NMR Analysis of Schizosaccharomyces pombe Reveals Role of α-Amylase Family Enzymes in Cell Wall Structure and Function

The fission yeast Schizosaccharomyces pombe is a widely employed model organism for studying the eukaryotic cell cycle. Like plants and bacteria, S. pombe must build a cell wall in concert with its cell cycle, but how cell wall-synthesizing and remodeling enzymes mediate this process remains unclear. Here we characterize the functions of Aah1 and Aah3, two related S. pombe α-amylases that are putative members of this evolutionarily conserved family of cell wall-modifying proteins. We found that unlike rod-shaped wildtype S. pombe cells, aah1Δ aah3Δ cells are nearly spherical, grow slowly, have thickened cell walls, and have severe defects in cell separation following cytokinesis. Solid-state NMR spectroscopy analyses of intact wildtype and aah1Δ aah3Δ cells revealed that aah1Δ aah3Δ cell walls are rigidified with a significant reduction in the α-glucan matrix, characterized by reduced amounts of the major α-1,3-glucan and the minor α-1,4-glucan within the rigid and mobile phases; this reduction was compensated for by a two-fold increase in β-glucan content. Indeed, viability of aah1Δ aah3Δ cells depended on β-glucan upregulation and the cell wall integrity pathway that mediates it. While aah1Δ aah3Δ cells resemble cells with impaired function of the transglycosylation domain of α-glucan synthase 1 (Ags1), increased expression of Aah3 does not compensate for impaired Ags1 function or vice-versa. Overall, our data suggest that Aah1 and Aah3 are required in addition to Ags1, likely downstream, for the transglycosylation of α-glucan chains to generate fibers of appropriate dimensions to support proper cell morphology, growth, and division.

Significance Statement

This study utilized a range of imaging techniques and high-resolution solid-state NMR spectroscopy of intact S. pombe cells to refine our understanding of S. pombe cell wall composition. This study also determined that two related GPI-anchored α-amylase family proteins, Aah1 and Aah3, likely act as transglycosylases non-redundantly with an α-glucan synthase in the synthesis of α-glucan chains of appropriate content and size to support polarized growth and cell division. Our results also highlight the anti-fungal therapeutic potential of GPI-anchored enzymes acting in concert with glucan synthases.

Neonatal fungi promote lifelong metabolic health through macrophage-dependent β cell development

Loss of early-life microbial diversity is correlated with diabetes, yet mechanisms by which microbes influence disease remain elusive. We report a critical neonatal window in mice when microbiota disruption results in lifelong metabolic consequences stemming from reduced β cell development. We show evidence for the existence of a similar program in humans and identify specific fungi and bacteria that are sufficient for β cell growth. The microbiota also plays an important role in seeding islet-resident macrophages, and macrophage depletion during development reduces β cells. Candida dubliniensis increases β cells in a macrophage-dependent manner through distinctive cell wall composition and reduces murine diabetes incidence. Provision of C. dubliniensis after β cell ablation or antibiotic treatment improves β cell function. These data identify fungi as critical early-life commensals that promote long-term metabolic health.

Transkingdom mechanism of MAMP generation by chitotriosidase feeds oligomeric chitin from fungal pathogens and allergens into TLR2-mediated innate immune sensing

Introduction

Chitin is a highly abundant polysaccharide in nature and is linked to immune recognition of fungal infections and asthma in humans. Ubiquitous in fungi and insects, chitin is absent inmammals and plants and, thus, represents a microbeassociatedmolecular pattern (MAMP). However, highly polymeric chitin is insoluble, which potentially hampers recognition by host immune sensors. In plants, secreted chitinases degrade polymeric chitin into diffusible oligomers, which are "fed to" innate immune receptors and co-receptors. In human and murine immune cells, a similar enzymatic activity was shown for human chitotriosidase (CHIT1), and oligomeric chitin is sensed via an innate immune receptor, Toll-like receptor (TLR) 2. However, a complete system of generating MAMPs from chitin and feeding them into a specific receptor/co-receptor-aided sensing mechanism has remained unknown in mammals.

Methods

The effect of the secreted chitinolytic host enzyme, CHIT1, on the TLR2 activity of polymeric chitin preparations from shrimps, house dust mites and the fungal pathogen Candida albicans was assessed in vitro using cell lines and primary immune cells. Moreover, the regulation of CHIT1 was analyzed.

Results

Here, we show that CHIT1 converts inert polymeric chitin into diffusible oligomers that can be sensed by TLR1/TLR2 co-receptor/receptor heterodimers, a process promoted by the lipopolysaccharide binding protein (LBP) and CD14. Furthermore, we observed that Chit1 is induced via the b-glucan receptor Dectin-1 upon direct contact of immortalized human macrophages to the fungal pathogen Candida albicans, whereas the defined fungal secreted aspartyl proteases, Sap2 and Sap6, from C. albicans were able to degrade CHIT1 in vitro.

Discussion

Our study shows the existence of an inducible system of MAMP generation in the human host that enables contact-independent immune activation by diffusible MAMP ligands with a striking similarity to the plant kingdom. Moreover, this study highlights CHIT1 as a potential therapeutic target for TLR2-mediated inflammatory processes that are fueled by oligomeric chitin.

Extracting Protoplasts from Filamentous Fungi Using Extralyse, An Enzyme Used in the Wine Industry

The ability to extract protoplasts has contributed significantly to the study of fungi and plants. Protoplasts have historically been used to determine chromosome number via pulsed-field electrophoresis and for the functional characterization of genes via protoplast transformation. More recently, protoplasts have been used to extract the high-molecular-weight DNA required for long-read sequencing projects. The availability of efficient protoplast extraction protocols is thus integral to the study and experimental manipulation of model and non-model fungi. One major hurdle to the development of such protocols has been the discontinuation of enzymes and enzyme cocktails used to digest the fungal cell wall. Here, we provide five protoplast extraction protocols for use in various filamentous ascomycete species spanning the genera Ceratocystis, Fusarium, Metarhizium, Ophiostoma, and Sclerotinia. These protocols all use an inexpensive, readily available enzyme cocktail called Extralyse, a commercially available product commonly used in the wine making industry. Using this enzyme cocktail overcomes reliance on the laboratory-grade enzymes that have frequently been discontinued and are often cost prohibitive at the concentrations required. The protocols described here will allow further research, including genome editing, to be conducted in these fungal genera. Importantly, these protocols also provide a starting point for the development of protoplast extraction techniques in other filamentous fungi. This resource can therefore be used to expand the molecular toolkits available for fungi beyond the species described here, including those with relevance in both medical and biotechnological industries. © 2025 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol 1: Protoplast extractions from Ceratocystis eucalypticola and Ceratocystis fimbriata Basic Protocol 2: Protoplast extractions from Fusarium circinatum Basic Protocol 3: Protoplast extractions from Metarhizium acridum, Metarhizium brunneum, and Metarhizium guizhouense Basic Protocol 4: Protoplast extractions from Ophiostoma novo-ulmi Basic Protocol 5: Protoplast extractions from Sclerotinia sclerotiorum.

Impacts of trophic interactions on carbon accrual in soils

The transformation and stabilization of soil organic carbon (SOC) are important processes of global carbon (C) cycling, with implications for climate change. Much attention has been given to microbial anabolic processes driving SOC accrual. These are referred to as the soil microbial carbon pump (MCP), which emphasizes the contribution of microbial metabolism and necromass to the stable soil C pool. However, we still lack a fundamental understanding of how trophic interactions between soil fauna and microbiota modulate microbial necromass production and, consequently, SOC formation. Here, we provide an ecological perspective on the impacts of trophic interactions on modulating necromass formation and C accrual in soils. We discuss the mechanisms of trophic interactions in the context of food web ecology, with a focus on trophic control of microbial population densities and their influences on soil microbiota assembly. We foresee that integrating trophic interactions into the soil MCP framework can provide a more comprehensive basis for guiding future research efforts to elucidate the mechanisms modulating microbial necromass and SOC formation in terrestrial ecosystems. This perspective offers an ecological foundation for leveraging the use of biological interventions to enhance SOC accrual, providing valuable insights for sustainable C management strategies.

Trehalose Biosynthetic Genes Are Involved in the Development and Pathogenesis in the Poplar Canker Fungus Cytospora chrysosperma

Poplar Cytospora canker, caused by Cytospora chrysosperma, is one of the most destructive and widespread poplar diseases worldwide, especially in northern China. However, our current understanding of its pathogenic mechanisms remains limited. Here, we show that trehalose biosynthetic genes, such as trehalose-6-phosphate synthase 1 (CcTps1), trehalose-6-phosphate phosphatase (CcTps2), and the regulatory subunit (CcTps3), play important roles in the development and virulence of C. chrysosperma. The targeted deletion mutants showed reduced trehalose synthesis and were defective in hyphal growth and conidiation. Deletion of any of the three genes attenuated virulence in poplar twigs, and stronger poplar defense responses were triggered after inoculated by the mutants. Additionally, the mutants exhibited increased sensitivity to H2O2 and cell wall stressors. Taken together, the findings suggest that trehalose biosynthetic genes contribute to fungal development, stress responses, and full virulence in C. chrysosperma.

From glycans to green biotechnology: exploring cell wall dynamics and phytobiota impact in plant glycopathology

Filamentous plant pathogens, including fungi and oomycetes, pose significant threats to cultivated crops, impacting agricultural productivity, quality and sustainability. Traditionally, disease control heavily relied on fungicides, but concerns about their negative impacts motivated stakeholders and government agencies to seek alternative solutions. Biocontrol agents (BCAs) have been developed as promising alternatives to minimize fungicide use. However, BCAs often exhibit inconsistent performances, undermining their efficacy as plant protection alternatives. The eukaryotic cell wall of plants and filamentous pathogens contributes significantly to their interaction with the environment and competitors. This highly adaptable and modular carbohydrate armor serves as the primary interface for communication, and the intricate interplay within this compartment is often mediated by carbohydrate-active enzymes (CAZymes) responsible for cell wall degradation and remodeling. These processes play a crucial role in the pathogenesis of plant diseases and contribute significantly to establishing both beneficial and detrimental microbiota. This review explores the interplay between cell wall dynamics and glycan interactions in the phytobiome scenario, providing holistic insights for efficiently exploiting microbial traits potentially involved in plant disease mitigation. Within this framework, the incorporation of glycobiology-related functional traits into the resident phytobiome can significantly enhance the plant's resilience to biotic stresses. Therefore, in the rational engineering of future beneficial consortia, it is imperative to recognize and leverage the understanding of cell wall interactions and the role of the glycome as an essential tool for the effective management of plant diseases.

Structure and strain specificity for polysaccharides from king oyster mushroom (Pleurotus eryngii) fruiting bodies

King oyster mushroom Pleurotus eryngii is cultivated worldwide for culinary and to improve human health. However, the potential of some Mediterranean representatives of this species is still not evaluated. This work focuses on the study of polysaccharides from fruiting bodies of two Tunisian strains, P. eryngii var. elaeoselini and P. eryngii var. ferulae, and, for comparison, one deposited P. eryngii originated from Korea. Polysaccharides were successively extracted with hot water using microwave heating and 1 mol L-1 aqueous sodium hydroxide. The crude hot water extracts were purified by treating them with proteolytic enzymes, and the alkaline extracts were purified by re-dissolving with dimethyl sulphoxide. In both cases, a decrease or removal of proteins was detected. Glucans predominated in all these products; the insoluble parts also contained chitin. The purified hot water extracts contained glycogen, β-d-glucans and mannogalactan. Branching (1 → 3)(1 → 6)-β-d-glucan was the major polysaccharide in the alkali-soluble fractions, while (1 → 3)-α-d-glucan was only a minor component. The Tunisian strains demonstrated a higher proportion of water-soluble polysaccharides, compared to the alkaline soluble ones, and more β-d-glucan in the insoluble chitin-glucan complexes. Fruiting body proteins of these strains are more available for solubilisation and enzymatic or alkaline degradation and, thus, may have higher nutritional value than those of the reference strain. As a source of proteins or polysaccharides, the Tunisian endemic P. eryngii strains of this study are promising for the domestication and cultivation of fruiting bodies for gastronomic purposes in the North African region.

The influence of surface materials on microbial biofilm formation in aviation fuel systems

The ability of different microbes to form biofilms on materials found in aviation fuel systems was assessed using both individual isolates and complex microbial communities. Biofilm formation by the Gram-negative bacterium, Pseudomonas putida, the fungus Amorphotheca resinae and the yeast, Candida tropicalis, was influenced by material surface properties although this differed between isolates. Biofilm formation was greatest at the fuel-water interface. The Gram-positive bacterium Rhodococcus erythropolis, in contrast, was able to grow on most surfaces. When a subset of materials was exposed to complex microbial communities, the attached microbial community structure was influenced by surface properties and selected for different genera best able to form biofilms on a specific surface. Distinct sub-populations of Pseudomonads were identified, which favoured growth on aluminium or painted surfaces, with a different subpopulation favouring growth on nitrile.

Cryo-EM structure of the β-1,3-glucan synthase FKS1-Rho1 complex

β-1,3 Glucan synthase (GS) is essential for fungal cell wall biosynthesis. The GS holoenzyme comprises the glycosyltransferase FKS1 and its regulatory factor Rho1, a small GTPase. However, the mechanism by which Rho1 activates FKS1 in a GTP-dependent manner remains unclear. Here, we present two cryo-EM structures of FKS1, apo and in complex with Rho1. FKS1 adopts a cellulose synthase-like conformation. The interaction between Rho1 and FKS1 is enhanced in the presence of GTPγS. Rho1 is positioned within a pocket between the glycosyltransferase domain of FKS1 (GT domain) and the transmembrane helix spanning TM7-15. Comparison of the two structures reveals extensive conformational changes within FKS1. These alterations suggest that Rho1's GTP/GDP cycling may act as a molecular pump, promoting a dynamic transition between the resting and active states of FKS1. Notably, Rho1 triggers FKS1 conformational changes that may push the growing glucan chain into FKS1's transmembrane channel, thereby facilitating β-1,3-glucan elongation.

Antifungal efficacy and mechanisms of Bacillus licheniformis BL06 against Ceratocystis fimbriata

Sweet potato black rot caused by the pathogenic fungus Ceratocystis fimbriata is a destructive disease that can result in severe agricultural losses. This study explores the antifungal efficacy and underlying mechanisms of Bacillus licheniformis BL06 against C. fimbriata. The plate antagonism assay revealed that BL06 significantly suppressed the radial growth of C. fimbriata mycelia, achieving inhibition rates of 39.53%, 53.57%, 64.38%, and 69.11% after 7, 10, 13, and 16 days, respectively. In vivo experiments demonstrated that BL06-treated sweet potato tissues exhibited markedly smaller lesions than the control, indicating effective suppression of black rot. Microscopic observations indicated that BL06 treatment altered the morphology and activity of C. fimbriata mycelia, causing swelling and deformation. Additionally, BL06 markedly reduced spore production and germination in a dose-dependent manner, with complete inhibition observed at the highest concentrations tested. The cell-free supernatant (CFS) of BL06 was identified as the primary antifungal agent, achieving an inhibition rate of 76.11% on mycelial growth. Transcriptome analysis of C. fimbriata treated with BL06 CFS revealed significant downregulation of genes involved in cell wall and membrane biosynthesis, spore development, protein processing in the endoplasmic reticulum, and energy metabolism. These findings suggest that BL06 is a potent biocontrol agent against C. fimbriata, exerting its effects through multiple molecular pathways.